Citrus Sinensis ID: 001797
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1012 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIT7 | 974 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.983 | 0.424 | 0.0 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.926 | 0.855 | 0.270 | 1e-102 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.752 | 0.840 | 0.282 | 1e-101 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.806 | 0.936 | 0.275 | 7e-94 | |
| Q9SV46 | 851 | Pentatricopeptide repeat- | no | no | 0.803 | 0.955 | 0.294 | 3e-93 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.507 | 0.693 | 0.350 | 1e-91 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.665 | 0.803 | 0.306 | 3e-91 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.715 | 0.733 | 0.287 | 1e-90 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.711 | 0.786 | 0.294 | 1e-90 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.626 | 0.869 | 0.278 | 7e-88 |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1005 (42%), Positives = 619/1005 (61%), Gaps = 47/1005 (4%)
Query: 12 FIRTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVV 71
R RT ++R + F + ++ +A+ EI L + +W + SS L ++NP+VV
Sbjct: 6 LFRKRTLVTRANFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIEINPEVV 65
Query: 72 QSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIA 131
SVL+ V+DP +LL FFNW +Q L SFS+LA+ LCN F A V++RMI
Sbjct: 66 LSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIE 125
Query: 132 TRRSSYQILESFLMCYRE--RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVP 189
++ S + C +E GV+F +L DGY G++++A VF + VP
Sbjct: 126 RNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSM-GLELVP 184
Query: 190 GLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVL 249
L C +L+ LLR N+L LFW VY M+E V DV TY LI AH RAGNV+ + VL
Sbjct: 185 RLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVL 244
Query: 250 FEMEEKVGA----IDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMY 305
F+ E++ +D A +LKESMI KGLVP +TY +++DG CK KRLEDAK LL +M
Sbjct: 245 FKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD 304
Query: 306 DLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIE 365
L ++ + Y+ LI+G +K N A L +EMV+ GI + + Y+ I + K G +E
Sbjct: 305 SLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVME 364
Query: 366 KAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVII 425
KAK L M+ G+ P Q Y SLIEG RE N+ + YELLV+MKKRN+ + YT ++
Sbjct: 365 KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVV 424
Query: 426 NGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL 485
G+C DL+GA + +EMIA G +PN +YTTLI+ L+ +RF +A+ +LK M +G+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRY 545
PD+FCYNSLI GL KAK+M++ARS LVEM NGLKPN +TYGAFI Y + +AD+Y
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 546 FQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSR 605
+EM CG+ PN ++ T LI+ +CK+G V EA S +R M+ +GIL D KTY+VL++GL +
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVT 665
K+ +A E+F E++ KG+ PDV +Y LI+GF K G +++A + ++M E G+TPN++
Sbjct: 605 NDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVII 664
Query: 666 YNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725
YN L+ G C+SGE+E+A+EL D + KGL P VTY TIIDGYCKSG+L EAF+L +EM
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 726 SRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCK----SQ 781
+G+ PD+FVY TLVDGCCR ++E+A+++F + +ST+ FNAL+N + K
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT 841
K N+L++ D+ PN VTY I+IDY CK G ++ A+ L +MQ L P TYT
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901
SLL+GY +G+R+EMF +FDE + G+EPD ++YS++++A+LKEG K + LVD+MF +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKA 961
V D KLS +TC L+S + G ++ A
Sbjct: 905 NAV------------------------------DDGCKLSISTCRALLSGFAKVGEMEVA 934
Query: 962 TRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAI 1006
+ +E+M++ ++ DS +++L+ + S +SN EA A+
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINE------SCISSNQRVEADAV 973
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 283/1046 (27%), Positives = 476/1046 (45%), Gaps = 108/1046 (10%)
Query: 33 SLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNW 92
S + + K I N L + W SL N + D Q+ L+ H K L F W
Sbjct: 12 SYETGFDMEKSIYNILTIDRWGSL-------NHM--DYRQARLRLVH---GKLALKFLKW 59
Query: 93 TSTQLGIPPNLHSFSYLAM---MLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRE 149
Q G+ + H + + +L +R++ A ++ + S + + + YR
Sbjct: 60 VVKQPGLETD-HIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRL 118
Query: 150 RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKL 209
N S V+++LI Y + G + D+ + F ++ G P + CN+IL ++++ +
Sbjct: 119 CN-SNPSVYDILIRVYLREGMIQDS-LEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVS 176
Query: 210 FWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEE--------------- 254
W ML+ K+ PDV T+ LIN G+ + + ++ +ME+
Sbjct: 177 VWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLH 236
Query: 255 ---KVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP 311
K G A EL + M KG+ D TY++++ C++ R+ LLL+ M ++P
Sbjct: 237 WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHP 296
Query: 312 NEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALI---------------- 355
NEV Y TLINGF +G + A +L NEM++FG+ N T+NALI
Sbjct: 297 NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF 356
Query: 356 -------------------GGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396
G+CK E + A+G M R G+ TY +I+G +
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416
Query: 397 NNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVY 456
+ +A LL +M K + P T + +ING C+ + A + + GL PN +Y
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476
Query: 457 TTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDAR-------- 508
+TLI R +EAI I + M +G D F +N L++ LCKA K+ +A
Sbjct: 477 STLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS 536
Query: 509 ----------SCLV-----------------EMTANGLKPNLYTYGAFIREYTKTGNMQA 541
CL+ EMT G P +TYG+ ++ K G+++
Sbjct: 537 DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLRE 596
Query: 542 ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIH 601
A+++ + + A + ++Y TL+ CK GN+ +A S F M+ R ILPD TY+ LI
Sbjct: 597 AEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS 656
Query: 602 GLSRCGKIHEALEVFSELQDKG-LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGIT 660
GL R GK A+ E + +G ++P+ + Y+ + G K G K E+M G T
Sbjct: 657 GLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHT 716
Query: 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQL 720
P+IVT NA+IDG + G++E+ +L + + P + TY ++ GY K +++ +F L
Sbjct: 717 PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLL 776
Query: 721 VNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGLCK 779
+ G+ PD +LV G C +E L + + +G+ +FN L++ C
Sbjct: 777 YRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCA 836
Query: 780 SQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRT 839
+ +I A L++ M I+ + T ++ + +++ +L EM K+ + P R
Sbjct: 837 NGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRK 896
Query: 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899
Y L++G +G F + +EM+ + P V S MV A K G + L+ M
Sbjct: 897 YIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFML 956
Query: 900 LRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNID 959
LV +T+L + CK + L+L M + +KL + +LI+ + G++
Sbjct: 957 KMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMA 1016
Query: 960 KATRFLESMIKFGWVADSTVMMDLVK 985
A E M G++A++T L++
Sbjct: 1017 LAFELYEEMKGDGFLANATTYKALIR 1042
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 242/856 (28%), Positives = 403/856 (47%), Gaps = 94/856 (10%)
Query: 39 EAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLG 98
+A K I + WE + S + +L V+ +L + ++DPK L FFN+ G
Sbjct: 43 DAVKRIVR--GKRSWEIALSSELVSRRLKTVHVEEILIGT-IDDPKLGLRFFNFLGLHRG 99
Query: 99 IPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVF 158
+ SF L L + LF AS ++ ++ + CY + +S F
Sbjct: 100 FDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSF 159
Query: 159 EMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVML 218
++LI Y + + D +VF ++ +P + +++L+ L++ L ++++ M+
Sbjct: 160 DLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMV 219
Query: 219 EAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEE------------------KVGAID 260
+ PDVY YT +I + ++ A+ ++ ME K +
Sbjct: 220 SVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVW 279
Query: 261 EAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLI 320
EA +K+ + K L PD TY +V G CK + E ++ +M L+ +P+E ++L+
Sbjct: 280 EAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLV 339
Query: 321 NGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGIN 380
G K+G ++EA L +V FG+ NLF YNALI +CK + +A+ L M ++G+
Sbjct: 340 EGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLR 399
Query: 381 PDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRV 440
P+ TY+ LI+ R + A L +M L + Y N +ING C+ D+ A
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGF 459
Query: 441 FEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCK 500
EMI L+P YT+L+ + + + +A+ + MTGKG+ P ++ + +L+SGL +
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFR 519
Query: 501 AKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAP---- 556
A + DA EM +KPN TY I Y + G+M A + +EM GI P
Sbjct: 520 AGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYS 579
Query: 557 -------------------------------NDIIYTTLIDGHCKEGNVKEAFSTFRCML 585
N+I YT L+ G C+EG ++EA S + M+
Sbjct: 580 YRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMV 639
Query: 586 GRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIK 645
RG+ DL Y VLI G + + E+ D+GL PD + Y+S+I K G K
Sbjct: 640 QRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFK 699
Query: 646 EAFQLHEKMCESGITPNIVTYNALIDGLCKSG---------------------------- 677
EAF + + M G PN VTY A+I+GLCK+G
Sbjct: 700 EAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFL 759
Query: 678 --------ELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV 729
++++A EL + I KGL TY +I G+C+ G + EA +L+ M GV
Sbjct: 760 DILTKGEVDMQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGV 818
Query: 730 TPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGLCKSQKIFEANK 788
+PD Y T+++ CR +++KA+ L+ M +KG+ ++N L++G C + ++ +A +
Sbjct: 819 SPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878
Query: 789 LLEDMADKHITPNHVT 804
L +M + + PN+ T
Sbjct: 879 LRNEMLRQGLIPNNKT 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 246/892 (27%), Positives = 416/892 (46%), Gaps = 76/892 (8%)
Query: 33 SLHSNEEAAKEITNFLNENHWESLIES--SKLRNKLNPDVVQSVLQHSHVNDPKRLLGFF 90
+ N + +I N L W E+ S L K P+ V VL+ + D R + +F
Sbjct: 28 TFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRR--LKDVNRAIEYF 85
Query: 91 NWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRER 150
W + +P S++ L +++ R F A +D+++ E
Sbjct: 86 RWYERRTELPHCPESYNSLLLVMARCRNFDA----LDQILG-----------------EM 124
Query: 151 NVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLF 210
+V+G FG P + C ++ ++ANKL+
Sbjct: 125 SVAG------------------------FG--------PSVNTCIEMVLGCVKANKLREG 152
Query: 211 WKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMI 270
+ V +M + K P YT+LI A F A N LF+ +++G E +
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGA-FSAVNHSDMMLTLFQQMQELGY--------EPTV 203
Query: 271 HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQ 330
H ++ ++ GF K R++ A LL +M L+ + V+Y I+ F K G +
Sbjct: 204 H--------LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVD 255
Query: 331 EAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLI 390
A++ +E+ G+K + TY ++IG +CKA +++A + + + P T YN++I
Sbjct: 256 MAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMI 315
Query: 391 EGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLK 450
G +AY LL + + P+ N I+ L + ++ A +VFEEM
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAA 374
Query: 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSC 510
PN Y LI R + + A + M G+ P+V N ++ LCK++K+++A +
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434
Query: 511 LVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570
EM P+ T+ + I K G + A + +++ML+ N I+YT+LI
Sbjct: 435 FEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Query: 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVIT 630
G ++ ++ M+ + PDL+ + + + + G+ + +F E++ + VPD +
Sbjct: 495 HGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS 554
Query: 631 YSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690
YS LI G K GF E ++L M E G + YN +IDG CK G++ +A +L + +
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614
Query: 691 AKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNME 750
KG PTVVTY ++IDG K L EA+ L E S+ + + +Y +L+DG + G ++
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674
Query: 751 KALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILI 809
+A + E++QKGL ++N+LL+ L K+++I EA + M + TPN VTY ILI
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734
Query: 810 DYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVE 869
+ CK A EMQK+ +KP+ +YT+++ G A G +E ALFD G
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGV 794
Query: 870 PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921
PD Y+ M++ M L +E RGL ++ L ++L K +
Sbjct: 795 PDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKND 846
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 252/856 (29%), Positives = 411/856 (48%), Gaps = 43/856 (5%)
Query: 13 IRTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFL------NENHWESLIE--SSKLRN 64
I +R ++ L++ + SQ+ E + L EN S + S+K
Sbjct: 10 IPSRIRLRNLRNNKPFCSQSQFPKESENPSQEQRLLVYGSTSEENPVTSKVSLLSAKPEQ 69
Query: 65 KLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNS-RLFGAAS 123
K + V+ +L N+P+ L F+NW G + F L +L +S +G AS
Sbjct: 70 KDDASVIDVLLNRR--NNPEAALRFYNWARPWRGSFEDGDVFWVLIHILVSSPETYGRAS 127
Query: 124 GVIDRMIATRRSS--YQILESFLMCYRERNVSGGV-----VFEMLIDGYRKIGFLDDAAI 176
++ R ++T + +L S L+ + S G F L++ Y K D A+
Sbjct: 128 DLLIRYVSTSNPTPMASVLVSKLV---DSAKSFGFEVNSRAFNYLLNAYSK-DRQTDHAV 183
Query: 177 VFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAH 236
+ + +P N L+ L++ N L ++Y M+ V D T L+ A
Sbjct: 184 DIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRAS 243
Query: 237 FRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLED 296
R EEK EA E+ I +G PD YSL V CK L
Sbjct: 244 LR--------------EEKPA---EALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAM 286
Query: 297 AKLLLKKMYDLKL-NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALI 355
A LL++M + KL P++ YT++I +KQGN+ +A RLK+EM++ GI +N+ +LI
Sbjct: 287 ANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLI 346
Query: 356 GGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLS 415
G CK ++ A L +M + G +P++ T++ LIE + M KA E M+ L+
Sbjct: 347 TGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLT 406
Query: 416 PTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINI 475
P+ + + II G + E A ++F+E GL N FV T++ +Q + +EA +
Sbjct: 407 PSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCNTILSWLCKQGKTDEATEL 465
Query: 476 LKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTK 535
L M +G+ P+V YN+++ G C+ K M+ AR + GLKPN YTY I +
Sbjct: 466 LSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFR 525
Query: 536 TGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCML-GRGILPDLK 594
+ Q A M + I N ++Y T+I+G CK G +A M+ + +
Sbjct: 526 NHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCM 585
Query: 595 TYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKM 654
+Y+ +I G + G++ A+ + E+ G+ P+VITY+SL++G CK + +A ++ ++M
Sbjct: 586 SYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEM 645
Query: 655 CESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNL 714
G+ +I Y ALIDG CK +E A LF + +GL P+ Y ++I G+ GN+
Sbjct: 646 KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNM 705
Query: 715 TEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS-SFNAL 773
A L +M G+ D Y TL+DG +DGN+ A L+ EM GL + +
Sbjct: 706 VAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVI 765
Query: 774 LNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833
+NGL K + + K+ E+M ++TPN + Y +I H + G + +A L EM + +
Sbjct: 766 VNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGI 825
Query: 834 KPNFRTYTSLLHGYAG 849
P+ T+ L+ G G
Sbjct: 826 LPDGATFDILVSGQVG 841
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/516 (35%), Positives = 288/516 (55%), Gaps = 2/516 (0%)
Query: 420 TCNVIINGLCR-CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKG 478
+CNV + L + C A VF E G+ N Y +I + R +EA ++L
Sbjct: 212 SCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLL 271
Query: 479 MTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGN 538
M KG PDV Y+++++G C+ +++ + M GLKPN Y YG+ I +
Sbjct: 272 MELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK 331
Query: 539 MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSV 598
+ A+ F EM+ GI P+ ++YTTLIDG CK G+++ A F M R I PD+ TY+
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391
Query: 599 LIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESG 658
+I G + G + EA ++F E+ KGL PD +T++ LI+G+CK G +K+AF++H M ++G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 659 ITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAF 718
+PN+VTY LIDGLCK G+L+ A EL ++ GL P + TY +I++G CKSGN+ EA
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 719 QLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGL 777
+LV E + G+ D Y TL+D C+ G M+KA + EM+ KGL T +FN L+NG
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571
Query: 778 CKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837
C + + KLL M K I PN T+ L+ +C +K A + +M R + P+
Sbjct: 572 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 631
Query: 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDE 897
+TY +L+ G+ E + LF EM +G YS+++ +LK ++ ++ D+
Sbjct: 632 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQ 691
Query: 898 MFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933
M GL ++ ++ +++ K + ++ +DE+
Sbjct: 692 MRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEI 727
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 228/745 (30%), Positives = 357/745 (47%), Gaps = 72/745 (9%)
Query: 77 HSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMI------ 130
S VN PK L FF S +L S+ L +L ++ L AA V+ R+I
Sbjct: 114 RSKVN-PKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPV 172
Query: 131 ------ATRRSSYQILESFLMCYRE--RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVV 182
+R + + S +C+ E R ++ E+ +++ G A+ F V+
Sbjct: 173 LPCGLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCY--LALDVFPVL 230
Query: 183 KDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNV 242
+ G P CN +L L+RAN+ + + +DV+ + V+PDVY +T+ INA + G V
Sbjct: 231 ANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKG-VSPDVYLFTTAINAFCKGGKV 289
Query: 243 KAAQRVLFEMEEK------------------VGAIDEAFELKESMIHKGLVPDCFTYSLM 284
+ A ++ +MEE G DEAF KE M+ +G+ P TYS++
Sbjct: 290 EEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSIL 349
Query: 285 VDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI 344
V G + KR+ DA +LK+M PN +VY LI+ F++ G+L +A +K+ MV+ G+
Sbjct: 350 VKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 409
Query: 345 KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYE 404
L TYN LI G CK G+ + A+ L+ EML +G N + ++ S+I A
Sbjct: 410 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 469
Query: 405 LLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHL 464
+ +M RN+SP +I+GLC+ A ++ + + G + L+
Sbjct: 470 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLC 529
Query: 465 RQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLY 524
+ +EA I K + G+G + D YN+LISG C KK+++A L EM GLK
Sbjct: 530 EAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK---- 585
Query: 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584
P++ Y+ LI G V+EA +
Sbjct: 586 -------------------------------PDNYTYSILICGLFNMNKVEEAIQFWDDC 614
Query: 585 LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFI 644
G+LPD+ TYSV+I G + + E E F E+ K + P+ + Y+ LI +C+ G +
Sbjct: 615 KRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRL 674
Query: 645 KEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTI 704
A +L E M GI+PN TY +LI G+ +E A+ LF+ + +GL P V YT +
Sbjct: 675 SMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTAL 734
Query: 705 IDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764
IDGY K G + + L+ EM S+ V P+ Y ++ G RDGN+ +A L EM +KG+
Sbjct: 735 IDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 794
Query: 765 ASTS-SFNALLNGLCKSQKIFEANK 788
S ++ + G K + EA K
Sbjct: 795 VPDSITYKEFIYGYLKQGGVLEAFK 819
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 222/771 (28%), Positives = 368/771 (47%), Gaps = 47/771 (6%)
Query: 221 KVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT 280
+ P TY LI A +A + +A + EM +D G CF
Sbjct: 230 RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD------------GFTLRCFA 277
Query: 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMV 340
YSL CK + +A L++ P+ V YT LI+G + +EA N M
Sbjct: 278 YSL-----CKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMR 329
Query: 341 TFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMA 400
N+ TY+ L+ G ++ + K ++ M+ G P + +NSL+ + +
Sbjct: 330 ATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHS 389
Query: 401 KAYELLVDMKKRNLSPTAYTCNVIINGLC------RCSDLEGACRVFEEMIACGLKPNNF 454
AY+LL M K P N++I +C C L+ A + + EM+A G+ N
Sbjct: 390 YAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 455 VYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEM 514
++ + ++E+A ++++ M G+G +PD Y+ +++ LC A KME A EM
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 515 TANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNV 574
GL ++YTY + + K G ++ A ++F EM G PN + YT LI + K V
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV 569
Query: 575 KEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL--------------- 619
A F ML G LP++ TYS LI G + G++ +A ++F +
Sbjct: 570 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQ 629
Query: 620 -QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678
D P+V+TY +L+ GFCK ++EA +L + M G PN + Y+ALIDGLCK G+
Sbjct: 630 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 689
Query: 679 LERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCT 738
L+ A+E+ + G T+ TY+++ID Y K A +++++M P+ +Y
Sbjct: 690 LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTE 749
Query: 739 LVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGLCKSQKIFEANKLLEDMADKH 797
++DG C+ G ++A L M +KG + ++ A+++G KI +LLE M K
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKG 809
Query: 798 ITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMF 857
+ PN+VTY +LID+ CK G + A +LL EM++ + Y ++ G+ + E
Sbjct: 810 VAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESL 867
Query: 858 ALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM--FLRGLVLNQNVYTSLAN 915
L DE+ + P +Y +++D +K + ++L++E+ F LV + Y SL
Sbjct: 868 GLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIE 927
Query: 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLE 966
SLC + +L EM K + + C LI ++ I +A L+
Sbjct: 928 SLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 228/774 (29%), Positives = 377/774 (48%), Gaps = 54/774 (6%)
Query: 226 VYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAI---------------DEAFELKESMI 270
VY+Y SL+ G V ++ M + ++ DE FELK +I
Sbjct: 123 VYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLI 182
Query: 271 HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQ 330
Y+ +++ + +++ K + +M + K+ PN Y ++NG+ K GN++
Sbjct: 183 -------IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVE 235
Query: 331 EAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLI 390
EA + +++V G+ + FTY +LI G C+ +++ A + EM G + Y LI
Sbjct: 236 EANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295
Query: 391 EGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLK 450
G + +A +L V MK PT T V+I LC A + +EM G+K
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355
Query: 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSC 510
PN YT LI + Q +FE+A +L M KG++P+V YN+LI+G CK +EDA
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415
Query: 511 LVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570
+ M + L PN TY I+ Y K+ N+ A +ML + P+ + Y +LIDG C+
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474
Query: 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVIT 630
GN A+ M RG++PD TY+ +I L + ++ EA ++F L+ KG+ P+V+
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534
Query: 631 YSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690
Y++LI G+CK G + EA + EKM PN +T+NALI GLC G+L+ A L + +
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594
Query: 691 AKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNME 750
GL PTV T T +I K G+ A+ +M S G PD Y T + CR+G +
Sbjct: 595 KIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLL 654
Query: 751 KALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILI 809
A + +M + G++ ++++L+ G + A +L+ M D P+ T+ LI
Sbjct: 655 DAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714
Query: 810 DY--HCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867
+ K G K +E L M + F T LL ++MVE
Sbjct: 715 KHLLEMKYGKQKGSEPELCAMSNMM---EFDTVVELL----------------EKMVEHS 755
Query: 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL-RGLVLNQNVYTSLANSLCKEEEFYKV 926
V P+ Y ++ + GN+ K+ D M G+ ++ V+ +L + CK ++ +
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815
Query: 927 LKLLDEMGDKEIKLSH----ATCCILISSVYEAGNIDKATRFLESMIKFGWVAD 976
K++D+M I + H +C +LI +Y+ G ++ T +++++ G+ D
Sbjct: 816 AKVVDDM----ICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYED 865
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 362/703 (51%), Gaps = 69/703 (9%)
Query: 195 NSILNDLLRANKLKLFWKVY----DVMLEAKVTPDV------YTYTSL-----INAHFRA 239
N++ N L+R N L + +Y D+ L + + + +TSL I+ R+
Sbjct: 67 NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRS 126
Query: 240 GNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT----YSLMVDGFCKNKRLE 295
G + AQ L M + G E+ S+ +C + + L++ + + ++L
Sbjct: 127 GRLSDAQSCLLRMIRRSGV--SRLEIVNSL--DSTFSNCGSNDSVFDLLIRTYVQARKLR 182
Query: 296 DAK----LLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTY 351
+A LL K + + ++ LI ++ G ++ A+ + E+ G+ +N++T
Sbjct: 183 EAHEAFTLLRSKGFTVSID----ACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTL 238
Query: 352 NALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKK 411
N ++ +CK G++EK ++++ G+ PD TYN+LI + M +A+EL+ M
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298
Query: 412 RNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEE 471
+ SP YT N +INGLC+ E A VF EM+ GL P++ Y +L+ ++ E
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358
Query: 472 AINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIR 531
+ M + V+PD+ C++S++S
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMS----------------------------------- 383
Query: 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILP 591
+T++GN+ A YF + G+ P+++IYT LI G+C++G + A + ML +G
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443
Query: 592 DLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLH 651
D+ TY+ ++HGL + + EA ++F+E+ ++ L PD T + LI G CK G ++ A +L
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 652 EKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKS 711
+KM E I ++VTYN L+DG K G+++ A+E++ + +K + PT ++Y+ +++ C
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563
Query: 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS-SF 770
G+L EAF++ +EM S+ + P + +++ G CR GN S +M+ +G S+
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623
Query: 771 NALLNGLCKSQKIFEANKLLEDMADKH--ITPNHVTYTILIDYHCKAGTMKDAEHLLVEM 828
N L+ G + + + +A L++ M ++ + P+ TY ++ C+ MK+AE +L +M
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Query: 829 QKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD 871
+R + P+ TYT +++G+ +E F + DEM++RG PD
Sbjct: 684 IERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1012 | ||||||
| 224134148 | 1041 | predicted protein [Populus trichocarpa] | 0.988 | 0.960 | 0.558 | 0.0 | |
| 255540069 | 1151 | pentatricopeptide repeat-containing prot | 0.955 | 0.840 | 0.559 | 0.0 | |
| 359485848 | 1011 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 0.969 | 0.532 | 0.0 | |
| 296085044 | 973 | unnamed protein product [Vitis vinifera] | 0.953 | 0.991 | 0.523 | 0.0 | |
| 147862640 | 1024 | hypothetical protein VITISV_033285 [Viti | 0.949 | 0.938 | 0.504 | 0.0 | |
| 449451896 | 1032 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.937 | 0.493 | 0.0 | |
| 359475765 | 935 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.976 | 0.456 | 0.0 | |
| 449507709 | 999 | PREDICTED: pentatricopeptide repeat-cont | 0.920 | 0.932 | 0.441 | 0.0 | |
| 297797161 | 977 | hypothetical protein ARALYDRAFT_496372 [ | 0.946 | 0.980 | 0.427 | 0.0 | |
| 18424537 | 974 | pentatricopeptide repeat-containing prot | 0.946 | 0.983 | 0.424 | 0.0 |
| >gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa] gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/1036 (55%), Positives = 751/1036 (72%), Gaps = 36/1036 (3%)
Query: 1 MRLITHKTRHSFIRTRTKI-SRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIES 59
M LI HK +F++ + + +R ++ + + + +N EIT FLN+ +WESL+
Sbjct: 1 MGLICHKRNLNFLKIKATLKARTQNRKANNFCSKTQNNSNIVNEITTFLNQKNWESLL-- 58
Query: 60 SKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLF 119
+ NKL+PDVV SV+ VNDPKRLL FFNW Q+G L SFS LA++LCNSRLF
Sbjct: 59 PLVSNKLSPDVVHSVIT-KQVNDPKRLLDFFNWVQFQMGFSQKLQSFSILALILCNSRLF 117
Query: 120 GAASGVIDRMIATRRSSY-QILESFLMCYRERNVSG------------GVVFEMLIDGYR 166
A V+++MI Y +IL+S + +E +++ GVVFE+LIDGY+
Sbjct: 118 SRADSVVNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYK 177
Query: 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDV 226
K G D+A F G K G V GLLCCN +L+DLL+ANKL+LFW+ Y+ MLEA V DV
Sbjct: 178 KKGLFDEAVSFFLGA-KRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDV 236
Query: 227 YTYTSLINAHFRAGNVKAAQRVLFEMEEK------------------VGAIDEAFELKES 268
YTYT LINAHFRAGN K +R+LFEMEEK G +DEAFELK+
Sbjct: 237 YTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKL 296
Query: 269 MIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGN 328
M KGLV D FTYS+++DGF K KR +AKL+L++M+ L P V YT LI+GFM+QG+
Sbjct: 297 MDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356
Query: 329 LQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNS 388
EAFR+K EM+ G+KLNLFTYNAL+ G+CK G++EKA L+ EM+ +GI PDTQTYN+
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNN 416
Query: 389 LIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACG 448
+IEG +E N ++ +LL +MKK NL PTAYTC +IINGLCR +E A RVFE M++ G
Sbjct: 417 MIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLG 476
Query: 449 LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDAR 508
+KPN +YTTLI+ H+++ RF+EA+ ILK M KGV PDV CYNS+I GLCK++KME+A+
Sbjct: 477 VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536
Query: 509 SCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGH 568
LVEM GLKPN+YTYGA I Y K+G MQ ADRYF+EML CGIAPND++ T LIDG+
Sbjct: 537 DYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGY 596
Query: 569 CKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV 628
CKEG+ EA S FRCMLGR + PD++TYS LIHGL R GK+ A+E+ SE +KGLVPDV
Sbjct: 597 CKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDV 656
Query: 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDG 688
TY+S+ISGFCKQG I +AFQLHE MC+ GI+PNI+TYNALI+GLCK+GE+ERARELFDG
Sbjct: 657 FTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDG 716
Query: 689 IFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGN 748
I KGL VTY TIIDGYCKSGNL++AF+L +EM +GV PD+FVY L+DGC ++GN
Sbjct: 717 IPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGN 776
Query: 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTIL 808
EKALSLFLE VQKG ASTSS NAL++G CKS K+ EAN+LLEDM DKH+ P+HVTYTIL
Sbjct: 777 TEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTIL 836
Query: 809 IDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGV 868
IDYHCK G +K+AE V+MQKR L PN TYT+LL GY G+RSEMFALFDEM+ + +
Sbjct: 837 IDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDI 896
Query: 869 EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLK 928
EPDGV +S+M+DA+LKEG+ +KT+KLVD+M +G +++NV L + LC++E +VLK
Sbjct: 897 EPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLK 956
Query: 929 LLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQ 988
+L+++ ++ + LS ATC L+ ++AG +D A R L+SM++F WV DST + DL+ +Q
Sbjct: 957 VLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQ 1016
Query: 989 NDANSENTSNSWKEAA 1004
+ +SEN + K+ A
Sbjct: 1017 DSTDSENAGDFLKQMA 1032
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/997 (55%), Positives = 718/997 (72%), Gaps = 30/997 (3%)
Query: 1 MRLITHKTRHSFIRTRTKISRL-----KSMQFSTSQTSLHSNEEAAKEITNFLNENHWES 55
M ITH ++ ++RT IS L KS FST+ + S + KEIT+ L + +W+
Sbjct: 1 MGTITHFFKNQNGKSRTLISTLRTHSIKSNSFSTNADTNQS-DNTVKEITSLLKQKNWQF 59
Query: 56 LIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCN 115
LIESS L NKLNPDVV V++ + V DPKRL GFFNW +++ NL +FS L+++LCN
Sbjct: 60 LIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSLILCN 119
Query: 116 SRLFGAASGVIDRMIATRRSSYQILESFLMCYRERN----VSGGVVFEMLIDGYRKIGFL 171
S LFG A+ V++RMI TR +IL+S + CY+E N S VVFE+LID YRK GFL
Sbjct: 120 SGLFGNAANVLERMIDTRNPHVKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFL 179
Query: 172 DDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTS 231
++A VF G K + GL CCNS+ DLL+ N+++LFWKVY ML A + PDVYTYT+
Sbjct: 180 NEAVSVFLGA-KTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGA-IVPDVYTYTN 237
Query: 232 LINAHFRAGNVKAAQRVLFEMEEK------------------VGAIDEAFELKESMIHKG 273
LINA+ R G V+ + VLF+MEEK G +DEA ELK SM +KG
Sbjct: 238 LINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKG 297
Query: 274 LVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAF 333
L+PD + Y+ ++DGFC+ KR + K +L +MY + L P+ V YT LINGF+KQ ++ AF
Sbjct: 298 LLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAF 357
Query: 334 RLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGC 393
++K EM IKLN FTY ALI G+CK G++EKA+ L +EM +GI PD QTYN LIEG
Sbjct: 358 QVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGY 417
Query: 394 YRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNN 453
Y+ NM KAYELL+++KK NL+ AY C I+NGLC C DL A +F+EMI+ GLKPN
Sbjct: 418 YKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNI 477
Query: 454 FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVE 513
+YTT+++ +++ RFEEAI IL M +G+ PDVFCYN++I G CKA KME+ +S LVE
Sbjct: 478 VIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVE 537
Query: 514 MTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGN 573
M A GLKPN+YTYGAFI Y + G MQAA+R F EML+ GIAPND+I T LIDG+CK+GN
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGN 597
Query: 574 VKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSS 633
+AF+ FRCML +G+LPD++T+SVLIHGLS+ GK+ EA+ VFSEL DKGLVPDV TY+S
Sbjct: 598 TTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTS 657
Query: 634 LISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKG 693
LIS CK+G +K AF+LH+ MC+ GI PNIVTYNALI+GLCK GE+ +ARELFDGI KG
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717
Query: 694 LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753
L VTY+TII GYCKS NLTEAFQL + M GV PD+FVYC L+DGCC+ GN EKAL
Sbjct: 718 LARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKAL 777
Query: 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHC 813
SLFL MV++G+AST +FNAL++G K K+ EA +L+EDM D HITPNHVTYTILI+YHC
Sbjct: 778 SLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHC 837
Query: 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGV 873
G +K+AE L +EMQKR + PN TYTSLLHGY IG+RSEMF+LFDEMV RG++PD +
Sbjct: 838 TVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDL 897
Query: 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933
+S+MVDA+LKEGN +K +KLVD+M G+ + +N+YT L ++LCK +VLK+LDE+
Sbjct: 898 AWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEV 957
Query: 934 GDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIK 970
+ KLS ATC L+ + AG D+A R LESM++
Sbjct: 958 EKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1004 (53%), Positives = 716/1004 (71%), Gaps = 24/1004 (2%)
Query: 23 KSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVND 82
K+ FS+SQ +L NE++ +EIT LN ++W++L+ESS + KLN D+++SV+ + V D
Sbjct: 10 KAASFSSSQ-ALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIRSVILQNQVGD 68
Query: 83 PKRLLGFFNWTSTQLGIPP---NLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQI 139
PKRLL FF W+ ++G +L S LA+ LCNS +G AS +I +I S +
Sbjct: 69 PKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAV 128
Query: 140 LESFLMCYRERNVS-GGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSIL 198
L S + CYR N S V+F+ML+D YRK+GFL +A VF G K+ P LL CNS+L
Sbjct: 129 LGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGP-KNFEFRPSLLSCNSLL 187
Query: 199 NDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEK--- 255
DLL+ NK++LFWKV+D M KV PDVYTYT++I+AH + GNVK A+RVL EM EK
Sbjct: 188 GDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCS 247
Query: 256 ---------VGAI------DEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLL 300
+G + DEA ELK SM+ KGLVPD +TY ++++GFC KR +AKL+
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307
Query: 301 LKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICK 360
L +M D+ L P + Y LI+GFM+QG++++AFR+K+EMV GI+ NL +N L+ G+CK
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367
Query: 361 AGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT 420
AG++EKA +M EM+ G+ PD+QTY+ LIEG R NMA+A+ELL +MKKR L+PT T
Sbjct: 368 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427
Query: 421 CNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMT 480
+VIINGLCRC +L+G + EM+ GLKPN VYTTL+ AH ++ R EE+ IL+ M
Sbjct: 428 YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMR 487
Query: 481 GKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQ 540
+G+LPDVFCYNSLI G CKAK+ME+AR+ L+EM L+PN +TYGAFI Y+K G M+
Sbjct: 488 EQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEME 547
Query: 541 AADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLI 600
ADRYF EML+CG+ PN IYT LI+GHCKEGNV EAFS FR +L R +L D++TYSVLI
Sbjct: 548 IADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLI 607
Query: 601 HGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGIT 660
HGLSR GK+HEA +FSELQ+KGL+P+ TY+SLISG CKQG + +A QL E+MC GI
Sbjct: 608 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 667
Query: 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQL 720
P+IVTYN LIDGLCK+GE+ERA+ LFD I +GLTP VTY ++DGYCKS N T AFQL
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727
Query: 721 VNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS 780
+ EM RGV PD F+Y +++ CC++ EKAL LF EM++KG AST SFN L+ G CKS
Sbjct: 728 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKS 787
Query: 781 QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY 840
K+ EAN LLE+M +K PNHVTYT LID++CKAG M +A+ L +EMQ+R + P +TY
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847
Query: 841 TSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900
TSLLHGY IG SE+ ALF+EMV +G+EPD + Y +M+DAY +EGN+M+ KL DE+ +
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILV 907
Query: 901 RGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDK 960
+G+ ++ Y +L +LCK+EEF++VLKLL+E+G+ +L TC ++ AGN+D+
Sbjct: 908 KGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDE 967
Query: 961 ATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAA 1004
A L SM+KFGWV+++T + DLV +QN ANSE++ N K+ A
Sbjct: 968 AAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1001 (52%), Positives = 696/1001 (69%), Gaps = 36/1001 (3%)
Query: 8 TRHSFIRTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLN 67
T SF+ IS K+ FS+SQ +L NE++ +EIT LN ++W++L+ESS + KLN
Sbjct: 5 TCRSFMAKPRPISH-KAASFSSSQ-ALTQNEDSVREITTLLNSHNWQALMESSDIPKKLN 62
Query: 68 PDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPP---NLHSFSYLAMMLCNSRLFGAASG 124
D+++SV+ + V DPKRLL FF W+ ++G +L S LA+ LCNS +G AS
Sbjct: 63 TDIIRSVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASD 122
Query: 125 VIDRMIATRRSSYQILESFLMCYRERNVS-GGVVFEMLIDGYRKIGFLDDAAIVFFGVVK 183
+I +I S +L S + CYR N S V+F+ML+D YRK+GFL +A VF G K
Sbjct: 123 LIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGP-K 181
Query: 184 DGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVK 243
+ P LL CNS+L DLL+ NK++LFWKV+D M KV PDVYTYT++I+AH + GNVK
Sbjct: 182 NFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVK 241
Query: 244 AAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKK 303
A+RVL EM EK +DEA ELK SM+ KGLVPD +TY ++++GFC KR +AKL+L +
Sbjct: 242 DAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE 301
Query: 304 MYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGE 363
M D+ L P + Y LI+GFM+QG++++AFR+K+EMV GI+ NL +N L+ G+CKAG+
Sbjct: 302 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 361
Query: 364 IEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNV 423
+EKA +M EM+ G+ PD+QTY+ LIEG R NMA+A+ELL +MKKR L+PT T +V
Sbjct: 362 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 421
Query: 424 IINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKG 483
IINGLCRC +L+G + EM+ GLKPN VYTTL+ AH ++ R EE+ IL+ M +G
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481
Query: 484 VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAAD 543
+LPDVFCYNSLI G CKAK+ME+AR+ L+EM L+PN +TYGAFI Y+K G M+ AD
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 541
Query: 544 RYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGL 603
RYF EML+CG+ PN IYT LI+GHCKEGNV EAFS FR +L R +L D++TYSVLIHGL
Sbjct: 542 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGL 601
Query: 604 SRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI 663
SR GK+HEA +FSELQ+KGL+P+ TY+SLISG CKQG + +A QL E+MC GI P+I
Sbjct: 602 SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDI 661
Query: 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNE 723
VTYN LIDGLCK+GE+ERA+ LFD I +GLTP VTY ++DGYCKS N T AFQL+ E
Sbjct: 662 VTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEE 721
Query: 724 MPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783
M RGV PD F+Y +++ CC++ EKAL LF EM++KG AST SFN L+ G CKS K+
Sbjct: 722 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKL 781
Query: 784 FEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843
EAN LLE+M +K PNHVTYT LID++CKAG M +A+ L +EMQ+R + P +TYTSL
Sbjct: 782 QEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 841
Query: 844 LHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL 903
LHGY IG SE+ ALF+EMV +G+EPD + Y +M+DAY +EGN+M+ KL DE+ ++G+
Sbjct: 842 LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901
Query: 904 VLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATR 963
+ +L TC ++ AGN+D+A
Sbjct: 902 PMKSG-----------------------------FRLGLPTCSVIARGFQIAGNMDEAAE 932
Query: 964 FLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAA 1004
L SM+KFGWV+++T + DLV +QN ANSE++ N K+ A
Sbjct: 933 VLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 973
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/980 (50%), Positives = 694/980 (70%), Gaps = 19/980 (1%)
Query: 41 AKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIP 100
+++I++FL +N+W++++ SS + +KLNPDV+++VL + V DPKRLL FF W+ +Q+G+P
Sbjct: 44 SQQISDFLKQNNWKTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVP 103
Query: 101 PNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEM 160
L SFS LA+ LCNS LFG A+GV+ +MI T SS IL+S L +R S VVF++
Sbjct: 104 QFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDI 163
Query: 161 LIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEA 220
LID Y+++G LD+AA VFF V K+ + L+ CNS+L DLL+ ++LFWKVY+ ML+A
Sbjct: 164 LIDSYKRMGMLDEAANVFF-VAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDA 222
Query: 221 KVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEK------------------VGAIDEA 262
K+ DVYTYT L+ A + G+++ A+RVL EM+EK VG IDEA
Sbjct: 223 KMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEA 282
Query: 263 FELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLING 322
ELK SM KGLVP+ +TY+++ G C+ KR+ +AKL ++M L P+ + LI+G
Sbjct: 283 VELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDG 342
Query: 323 FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD 382
FM++G++ E R+K+ MV+ GI +NL TYN LI G+CK G++EKA ++ M+ LG P+
Sbjct: 343 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402
Query: 383 TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFE 442
++T+ LIEG RE+NM +A ELL +M+KRNL P+A + +INGLC C DL A ++ E
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 462
Query: 443 EMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAK 502
+M GLKPN VY+ LI A+ + R EEA +L GM+ GV PD+FCYN++IS L KA
Sbjct: 463 KMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 522
Query: 503 KMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYT 562
KME+A + L+E+ GLKP+ T+GAFI Y+KTG M A +YF EML+ G+ PN+ +YT
Sbjct: 523 KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYT 582
Query: 563 TLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDK 622
LI+GH K GN+ EA S FR + G+LPD++T S IHGL + G++ EAL+VFSEL++K
Sbjct: 583 VLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 642
Query: 623 GLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA 682
GLVPDV TYSSLISGFCKQG +++AF+LH++MC GI PNI YNAL+DGLCKSG+++RA
Sbjct: 643 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 702
Query: 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742
R+LFDG+ KGL P VTY+T+IDGYCKS N+ EAF L +EMPS+GV P +FVY LV G
Sbjct: 703 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 762
Query: 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH 802
CC++G+MEKA++LF EM+QKG A+T SFN L++G CKS KI EA++L ++M K I P+H
Sbjct: 763 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH 822
Query: 803 VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862
VTYT +ID+HCKAG M++A L EMQ+R L + TYTSL++GY +G+ SE+FALF++
Sbjct: 823 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEK 882
Query: 863 MVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922
MV +GV+PD V Y +++ A+ KE N+++ KL DE+ +G++ ++ L +LCK E+
Sbjct: 883 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 942
Query: 923 FYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMD 982
+ KLLDEMG+ +K S A C L+ S +EAG +D+ATR E + G V D+T ++D
Sbjct: 943 LTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLID 1002
Query: 983 LVKQDQNDANSENTSNSWKE 1002
LV + ND +SE+ N K+
Sbjct: 1003 LVNGNLNDTDSEDARNLIKQ 1022
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/987 (49%), Positives = 687/987 (69%), Gaps = 19/987 (1%)
Query: 25 MQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPK 84
M FST+ H ++ +E + L W+ L+ + KLNP++V SVLQ S ++D
Sbjct: 43 MFFSTNNPFDHY-DDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSV 101
Query: 85 RLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFL 144
RL FF W+S+++ P LHS+S LA+ LCNS L A ++++++ TR+ +IL+S +
Sbjct: 102 RLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 161
Query: 145 MCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRA 204
CYRE S VF++ ID +R +GFL++A+ VF + +G P L+CCN+++ DLL+A
Sbjct: 162 RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEG-FFPTLICCNNLMRDLLKA 220
Query: 205 NKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEE---------- 254
N + LFWKVY M+EAK+ PDVYTYT++I AH + G+V + VL EME+
Sbjct: 221 NMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYN 280
Query: 255 -------KVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDL 307
+ GA+DEA E+K+ M+ KGL PD TY+L+VDGFCK KR ++AKL+ + M
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340
Query: 308 KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKA 367
LNPN YT LI+GF+K+GN++EA R+K+EM+T G+KLN+ TYNA+IGGI KAGE+ KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400
Query: 368 KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIING 427
L EML G+ PDT TYN LI+G + ++MAKA ELL +MK R L+P+ +T +V+I+G
Sbjct: 401 MSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460
Query: 428 LCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPD 487
LC SDL+ A V ++MI G+KPN F+Y TLI+A+++++R+E AI +LK M GVLPD
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520
Query: 488 VFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQ 547
+FCYN LI GLC+AKK+E+A+ LV+M G+KPN +TYGAFI Y+K+G +Q A+RYF+
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFK 580
Query: 548 EMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG 607
+ML+ GI PN++IYT LI GHC GN EA STF+CML +G++PD++ YS +IH LS+ G
Sbjct: 581 DMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNG 640
Query: 608 KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYN 667
K EA+ VF + G+VPDV Y+SLISGFCK+G I++A QL+++M +GI PNIV YN
Sbjct: 641 KTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYN 700
Query: 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR 727
LI+GLCK GE+ +ARELFD I K L P VVTY+TIIDGYCKSGNLTEAF+L +EM S+
Sbjct: 701 TLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISK 760
Query: 728 GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEAN 787
G++PD ++YC L+DGC ++GN+EKALSLF E QK + S S+FN+L++ CK K+ EA
Sbjct: 761 GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEAR 820
Query: 788 KLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGY 847
+L +DM DK +TPN VTYTILID + KA M++AE L ++M+ R + PN TYTSLL Y
Sbjct: 821 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY 880
Query: 848 AGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQ 907
IG R +M +LF +M RG+ D + Y +M AY KEG ++ +KL+++ + G+ L
Sbjct: 881 NQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLED 940
Query: 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLES 967
+V+ +L LCKE++ VL+LL EMG +E+ LS TC L+ Y++GN D+A++ L
Sbjct: 941 DVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGV 1000
Query: 968 MIKFGWVADSTVMMDLVKQDQNDANSE 994
M + GWV S + D + ++D S+
Sbjct: 1001 MQRLGWVPTSLSLTDSISTGRDDMKSD 1027
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/990 (45%), Positives = 642/990 (64%), Gaps = 77/990 (7%)
Query: 15 TRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSV 74
T TK KS++FSTS T +++I++FL +N+W++++ SS + +KLNPDV+++V
Sbjct: 19 TNTKF--FKSIEFSTS-TPTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKLNPDVIRAV 75
Query: 75 LQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRR 134
L + V DPKRLL FF W+ +Q+G+P L SFS LA+ LCNS LFG A+GV+
Sbjct: 76 LHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLT------- 128
Query: 135 SSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCC 194
+M+ Y LD V F GGS P
Sbjct: 129 ------------------------QMIRTPYSSSSILDS---VLFWFRNYGGSSP----- 156
Query: 195 NSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLF--EM 252
V+D+ LI+++ R G + A V F +
Sbjct: 157 -----------------VVFDI---------------LIDSYKRMGMLDEAANVFFVAKN 184
Query: 253 EEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPN 312
+ + ++ L+ SM KGLVP+ +TY+++ G C+ KR+ +AKL ++M L P+
Sbjct: 185 DSILISLIRCNSLR-SMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 243
Query: 313 EVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMT 372
+ LI+GFM++G++ E R+K+ MV+ GI +NL TYN LI G+CK G++EKA ++
Sbjct: 244 YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK 303
Query: 373 EMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCS 432
M+ LG P+++T+ LIEG RE+NM +A ELL +M+KRNL P+A + +INGLC C
Sbjct: 304 GMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCK 363
Query: 433 DLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYN 492
DL A ++ E+M GLKPN VY+TLI + + R EEA +L GM+ GV PD+FCYN
Sbjct: 364 DLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYN 423
Query: 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNC 552
++IS L KA KME+A + L+E+ GLKP+ T+GAFI Y+KTG M A +YF EML+
Sbjct: 424 AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDH 483
Query: 553 GIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEA 612
G+ PN+ +YT LI+GH K GN+ EA S FR + G+LPD++T S IHGL + G++ EA
Sbjct: 484 GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEA 543
Query: 613 LEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDG 672
L+VFSEL++KGLVPDV TYSSLISGFCKQG +++AF+LH++MC GI PNI YNAL+DG
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDG 603
Query: 673 LCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD 732
LCKSG+++RAR+LFDG+ KGL P VTY+T+IDGYCKS N+ EAF L +EMPS+GV P
Sbjct: 604 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 663
Query: 733 NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLED 792
+FVY LV GCC++G+MEKA++LF EM+QKG A+T SFN L++G CKS KI EA++L ++
Sbjct: 664 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQE 723
Query: 793 MADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGK 852
M K I P+HVTYT +ID+HCKAG M++A L EMQ+R L + TYTSL++GY +G+
Sbjct: 724 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 783
Query: 853 RSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTS 912
SE+FALF++MV +GV+PD V Y +++ A+ KE N+++ KL DE+ +G++ ++
Sbjct: 784 SSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDL 843
Query: 913 LANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFG 972
L +LCK E+ + KLLDEMG+ +K S A C L+ S +EAG +D+ATR E + G
Sbjct: 844 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 903
Query: 973 WVADSTVMMDLVKQDQNDANSENTSNSWKE 1002
V D+T ++DLV + ND +SE+ N K+
Sbjct: 904 LVPDTTTLIDLVNGNLNDTDSEDARNLIKQ 933
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/990 (44%), Positives = 636/990 (64%), Gaps = 58/990 (5%)
Query: 25 MQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPK 84
M FST+ H ++ +E + L W+ L+ + KLNP++V SVLQ S ++D
Sbjct: 43 MFFSTNNPFDHY-DDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSV 101
Query: 85 RLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFL 144
RL FF+W+S+++ P LHS+S LA+ LCNS L A ++++++ TR+ +IL+S +
Sbjct: 102 RLQNFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLV 161
Query: 145 MCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRA 204
CYRE S VF++ ID +R +GFL++A+ VF + +G P L+CCN+++ DLL+A
Sbjct: 162 RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEG-FFPTLICCNNLMRDLLKA 220
Query: 205 NKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEE---------- 254
N + LFWKVY M+EAK+ PDVYTYT++I AH + G+V + VL EME+
Sbjct: 221 NMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYN 280
Query: 255 -------KVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDL 307
+ GA+DEA E+K+ M+ KGL PD TY+L+VDGFCK KR ++AKL+ + M
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340
Query: 308 KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKA 367
LNPN YT LI+GF+K+GN++EA R+K+EM+T G+KLN+ TYNA+IGGI KAGE+ KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400
Query: 368 KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIING 427
L EML GI PDT TYN LI+G + ++MAKA ELL +MK R L+P+ +T +V+I+G
Sbjct: 401 MSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460
Query: 428 LCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPD 487
LC SDL+ A V ++MI G+KPN F+Y TLI+A+++++R+E AI +LK M GVLPD
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520
Query: 488 VFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQ 547
+FCYN LI GLC+AKK+E+A+ LV+M G+KPN +TYGAFI Y+K+G +Q A+RYF+
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFK 580
Query: 548 EMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG 607
+ML+ GI PN++IYT LI GHC GN EA STF+CML +G++PD++ YS +IH LS+ G
Sbjct: 581 DMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNG 640
Query: 608 KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYN 667
K EA+ VF + G+VPDV Y+SLISGFCK+G I++A QL+++M +GI PNIV YN
Sbjct: 641 KTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYN 700
Query: 668 ALID--GLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725
LI+ G CKSG L A +LFD + +KG++P Y +IDG K GNL +A L +E
Sbjct: 701 TLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ 760
Query: 726 SRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIF 784
+ V + + +L+D C+ G + +A LF +MV K L + ++ L++ K++ +
Sbjct: 761 QKSVGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 819
Query: 785 EANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLL 844
EA +L DM ++I PN +TY TSLL
Sbjct: 820 EAEQLFLDMETRNIIPNTLTY-----------------------------------TSLL 844
Query: 845 HGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV 904
Y IG R +M +LF +M RG+ D + Y +M AY KEG ++ +KL+++ + G+
Sbjct: 845 LSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK 904
Query: 905 LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRF 964
L +V+ +L LCKE++ VL+LL EMG +E+ LS TC L+ Y++GN D+A++
Sbjct: 905 LEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKV 964
Query: 965 LESMIKFGWVADSTVMMDLVKQDQNDANSE 994
L M + GWV S + D + ++D S+
Sbjct: 965 LGVMQRLGWVPTSLSLTDSISTGRDDMKSD 994
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp. lyrata] gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/1002 (42%), Positives = 625/1002 (62%), Gaps = 44/1002 (4%)
Query: 11 SFIRTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDV 70
+ R R + R + F + + +A+ EI LN+ +W + SS L ++NP+V
Sbjct: 5 TLFRKRCLVKRANCLLFRSFSVNNEKLPDASAEIAGILNQGNWRETLVSSNLSIEINPEV 64
Query: 71 VQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMI 130
V SVL+ V+DP +LL FFN +Q L SFS+LA+ LCN A V+ RMI
Sbjct: 65 VLSVLRSKRVDDPSKLLSFFNLVDSQKVTEQKLDSFSFLALDLCNFGSIEKAHSVVIRMI 124
Query: 131 ATRRSSYQILESFLMCYRE---RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVK-DGG 186
+ ++ S + C RE ++ ++F +LIDGY + GFLD+A VF D
Sbjct: 125 ERKWPVAEVWSSIVRCLREFVGKSDDRVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLD 184
Query: 187 SVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQ 246
VP L CN +L+ LL+ N+L LFW VY M+E V DV +Y LI AH R GNV+ A+
Sbjct: 185 LVPSLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAK 244
Query: 247 RVLFEMEEKVGA----IDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLK 302
VL + EE++G +DEA ELK+SM KGLVP +Y+L++DG CK KRLEDAK LL
Sbjct: 245 DVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLV 304
Query: 303 KMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAG 362
+M + L + V Y+ LI+G +K N A L +EMV+ G ++ Y+ I + K G
Sbjct: 305 EMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEG 364
Query: 363 EIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCN 422
+EKAK L M+ G+ P + Y SLIEG +RE N+ K YELLV++KKRN+ + YT
Sbjct: 365 AMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYG 424
Query: 423 VIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK 482
+ G+C DL+GA + +EM A G +PN +YTTLI+ L+++RF +A+ +LK M +
Sbjct: 425 TAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQ 484
Query: 483 GVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAA 542
G+ PD FCYNSLI GL KAKKM++ARS L+EM NG KP+ +TYGAFI Y + G +A
Sbjct: 485 GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASA 544
Query: 543 DRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHG 602
D+Y +EML CG+ PN ++ T LI+ +CK+G V EA S FR M+ +GIL D KTY+VL++G
Sbjct: 545 DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604
Query: 603 LSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN 662
L + GK+++A E+F E++ KG+ PDV +Y +LI GF K G +++A + ++M ++G+T N
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664
Query: 663 IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVN 722
++ YN L+ G C+SGE+E+A+EL D + KG P VTY TIIDGYCKSG+L EAFQL +
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724
Query: 723 EMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSS-FNALLNGLCKSQ 781
EM +G+ PD+FVY TLVDGCCR ++E+A+++F E +KG AS+S+ FNAL+N + K
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFG 783
Query: 782 KIFEA----NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837
K N+L++ DK PN VTY I+IDY CK G ++ A+ L MQK L P
Sbjct: 784 KTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTV 843
Query: 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDE 897
TYTSLL+GY +G+RSEMF++FDE++ G+EPD ++YS++++A+LKEG K + L+D+
Sbjct: 844 ITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQ 903
Query: 898 MFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGN 957
MF + V D KLS +TC L+S + G
Sbjct: 904 MFAKNAV------------------------------DDGCKLSISTCRALLSGFAKVGE 933
Query: 958 IDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNS 999
++ A + +E+M++ ++ DS+ +++L+ + +N +++
Sbjct: 934 MEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAADA 975
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61990, mitochondrial; Flags: Precursor gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana] gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1005 (42%), Positives = 619/1005 (61%), Gaps = 47/1005 (4%)
Query: 12 FIRTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVV 71
R RT ++R + F + ++ +A+ EI L + +W + SS L ++NP+VV
Sbjct: 6 LFRKRTLVTRANFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIEINPEVV 65
Query: 72 QSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIA 131
SVL+ V+DP +LL FFNW +Q L SFS+LA+ LCN F A V++RMI
Sbjct: 66 LSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIE 125
Query: 132 TRRSSYQILESFLMCYRE--RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVP 189
++ S + C +E GV+F +L DGY G++++A VF + VP
Sbjct: 126 RNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSM-GLELVP 184
Query: 190 GLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVL 249
L C +L+ LLR N+L LFW VY M+E V DV TY LI AH RAGNV+ + VL
Sbjct: 185 RLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVL 244
Query: 250 FEMEEKVGA----IDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMY 305
F+ E++ +D A +LKESMI KGLVP +TY +++DG CK KRLEDAK LL +M
Sbjct: 245 FKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD 304
Query: 306 DLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIE 365
L ++ + Y+ LI+G +K N A L +EMV+ GI + + Y+ I + K G +E
Sbjct: 305 SLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVME 364
Query: 366 KAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVII 425
KAK L M+ G+ P Q Y SLIEG RE N+ + YELLV+MKKRN+ + YT ++
Sbjct: 365 KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVV 424
Query: 426 NGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL 485
G+C DL+GA + +EMIA G +PN +YTTLI+ L+ +RF +A+ +LK M +G+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRY 545
PD+FCYNSLI GL KAK+M++ARS LVEM NGLKPN +TYGAFI Y + +AD+Y
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 546 FQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSR 605
+EM CG+ PN ++ T LI+ +CK+G V EA S +R M+ +GIL D KTY+VL++GL +
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVT 665
K+ +A E+F E++ KG+ PDV +Y LI+GF K G +++A + ++M E G+TPN++
Sbjct: 605 NDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVII 664
Query: 666 YNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725
YN L+ G C+SGE+E+A+EL D + KGL P VTY TIIDGYCKSG+L EAF+L +EM
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 726 SRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCK----SQ 781
+G+ PD+FVY TLVDGCCR ++E+A+++F + +ST+ FNAL+N + K
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT 841
K N+L++ D+ PN VTY I+IDY CK G ++ A+ L +MQ L P TYT
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901
SLL+GY +G+R+EMF +FDE + G+EPD ++YS++++A+LKEG K + LVD+MF +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKA 961
V D KLS +TC L+S + G ++ A
Sbjct: 905 NAV------------------------------DDGCKLSISTCRALLSGFAKVGEMEVA 934
Query: 962 TRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAI 1006
+ +E+M++ ++ DS +++L+ + S +SN EA A+
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINE------SCISSNQRVEADAV 973
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1012 | ||||||
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.906 | 0.941 | 0.439 | 4.9e-204 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.803 | 0.896 | 0.274 | 8.1e-92 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.677 | 0.749 | 0.302 | 3e-85 | |
| TAIR|locus:2082727 | 851 | AT3G54980 [Arabidopsis thalian | 0.762 | 0.907 | 0.296 | 6.9e-86 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.528 | 0.849 | 0.307 | 1.4e-80 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.611 | 0.811 | 0.313 | 1.3e-84 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.652 | 0.757 | 0.298 | 3.1e-83 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.705 | 0.955 | 0.290 | 8.2e-83 | |
| TAIR|locus:2056078 | 867 | LOJ "LATERAL ORGAN JUNCTION" [ | 0.764 | 0.892 | 0.276 | 2.2e-82 | |
| TAIR|locus:2017754 | 718 | AT1G22960 [Arabidopsis thalian | 0.516 | 0.728 | 0.319 | 9.4e-82 |
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1974 (699.9 bits), Expect = 4.9e-204, P = 4.9e-204
Identities = 412/937 (43%), Positives = 589/937 (62%)
Query: 14 RTRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQS 73
R RT ++R + F + ++ +A+ EI L + +W + SS L ++NP+VV S
Sbjct: 8 RKRTLVTRANFLLFRSFSVNVEKLSDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLS 67
Query: 74 VLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATR 133
VL+ V+DP +LL FFNW +Q L SFS+LA+ LCN F A V++RMI
Sbjct: 68 VLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERN 127
Query: 134 RSSYQILESFLMCYRE--RNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGS-VPG 190
++ S + C +E GV+F +L DGY G++++A VF + G VP
Sbjct: 128 WPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSM--GLELVPR 185
Query: 191 LLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLF 250
L C +L+ LLR N+L LFW VY M+E V DV TY LI AH RAGNV+ + VLF
Sbjct: 186 LSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245
Query: 251 EMEEKVGA----IDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXX 306
+ E++ +D A +LKESMI KGLVP +TY +++DG CK KRLEDA
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305
Query: 307 XXXNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEK 366
+ + Y+ LI+G +K N A L +EMV+ GI + + Y+ I + K G +EK
Sbjct: 306 LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEK 365
Query: 367 AKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIIN 426
AK L M+ G+ P Q Y SLIEG RE N+ + YELLV+MKKRN+ + YT ++
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425
Query: 427 GLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLP 486
G+C DL+GA + +EMIA G +PN +YTTLI+ L+ +RF +A+ +LK M +G+ P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485
Query: 487 DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYF 546
D+FCYNSLI GL KAK+M++ARS LVEM NGLKPN +TYGAFI Y + +AD+Y
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545
Query: 547 QEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRC 606
+EM CG+ PN ++ T LI+ +CK+G V EA S +R M+ +GIL D KTY+VL++GL +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 607 GKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTY 666
K+ +A E+F E++ KG+ PDV +Y LI+GF K G +++A + ++M E G+TPN++ Y
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIY 665
Query: 667 NALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPS 726
N L+ G C+SGE+E+A+EL D + KGL P VTY TIIDGYCKSG+L EAF+L +EM
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725
Query: 727 RGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAS-TSSFNALLNGLCKSQKI-- 783
+G+ PD+FVY TLVDGCCR ++E+A+++F +KG AS T+ FNAL+N + K K
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 784 -FEA-NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT 841
E N+L++ D+ PN VTY I+IDY CK G ++ A+ L +MQ L P TYT
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901
SLL+GY +G+R+EMF +FDE + G+EPD ++YS++++A+LKEG K + LVD+MF +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 902 GLV-----LNQNVYTSLANSLCKEEEFYKVLKLLDEM 933
V L+ + +L + K E K+++ M
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENM 941
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 232/844 (27%), Positives = 411/844 (48%)
Query: 80 VNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQI 139
++DPK L FFN+ G + SF L L + LF AS ++ ++ +
Sbjct: 81 IDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDV 140
Query: 140 LESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILN 199
CY + +S F++LI Y + + D +VF ++ +P + +++L+
Sbjct: 141 FNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLH 200
Query: 200 DLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAI 259
L++ L ++++ M+ + PDVY YT +I + ++ A+ ++ ME G
Sbjct: 201 GLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEA-TGC- 258
Query: 260 DEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXXXXXNPNEVVYTTL 319
+VP Y++++DG CK +++ +A P+ V Y TL
Sbjct: 259 -----------DVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTL 303
Query: 320 INGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGI 379
+ G K + + +EM+ + ++L+ G+ K G+IE+A L+ ++ G+
Sbjct: 304 VYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGV 363
Query: 380 NPDTQTYNSLIEGCYRENNMAKAYELLVD-MKKRNLSPTAYTCNVIINGLCRCSDLEGAC 438
+P+ YN+LI+ + +A ELL D M K L P T +++I+ CR L+ A
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEA-ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTAL 422
Query: 439 RVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGL 498
EM+ GLK + + Y +LI H + A + M K + P V Y SL+ G
Sbjct: 423 SFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGY 482
Query: 499 CKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPND 558
C K+ A EMT G+ P++YT+ + + G ++ A + F EM + PN
Sbjct: 483 CSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNR 542
Query: 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618
+ Y +I+G+C+EG++ +AF + M +GI+PD +Y LIHGL G+ EA +VF +
Sbjct: 543 VTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVD 601
Query: 619 LQDKGLVP-DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG 677
KG + I Y+ L+ GFC++G ++EA + ++M + G+ ++V Y LIDG K
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK-- 659
Query: 678 ELERARELFDGIFA----KGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN 733
+ R+LF G+ +GL P V YT++ID K+G+ EAF + + M + G P+
Sbjct: 660 --HKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717
Query: 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQ-KGLASTSSFNALLNGLCKSQKIFEANKLLED 792
Y +++G C+ G + +A L +M + + ++ L+ L K + + L +
Sbjct: 718 VTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHN 777
Query: 793 MADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGK 852
K + N TY +LI C+ G +++A L+ M + P+ TYT++++
Sbjct: 778 AILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRND 837
Query: 853 RSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVY-T 911
+ L++ M E+G+ PD V Y+ ++ G M K +L +EM +GL+ N T
Sbjct: 838 VKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
Query: 912 SLAN 915
+ +N
Sbjct: 898 TTSN 901
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 219/725 (30%), Positives = 358/725 (49%)
Query: 260 DEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXXXXXNPNEVVYTTL 319
DE FELK +K L+ C Y+ +++ + +++ PN Y +
Sbjct: 172 DERFELK----YK-LIIGC--YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 320 INGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGI 379
+NG+ K GN++EA + +++V G+ + FTY +LI G C+ +++ A + EM G
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284
Query: 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACR 439
+ Y LI G + +A +L V MK PT T V+I LC A
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344
Query: 440 VFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLC 499
+ +EM G+KPN YT LI + Q +FE+A +L M KG++P+V YN+LI+G C
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 500 KAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI 559
K +EDA + M + L PN TY I+ Y K+ N+ A +ML + P+ +
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVV 463
Query: 560 IYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619
Y +LIDG C+ GN A+ M RG++PD TY+ +I L + ++ EA ++F L
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 620 QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGEL 679
+ KG+ P+V+ Y++LI G+CK G + EA + EKM PN +T+NALI GLC G+L
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583
Query: 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTL 739
+ A L + + GL PTV T T +I K G+ A+ +M S G PD Y T
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643
Query: 740 VDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798
+ CR+G + A + +M + G++ ++++L+ G + A +L+ M D
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGC 703
Query: 799 TPNHVTYTILIDY--HCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEM 856
P+ T+ LI + K G K +E L M + F T LL
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM---EFDTVVELL------------ 748
Query: 857 FALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLVLNQNVYTSLAN 915
++MVE V P+ Y ++ + GN+ K+ D M G+ ++ V+ +L +
Sbjct: 749 ----EKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804
Query: 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHA----TCCILISSVYEAGNIDKATRFLESMIKF 971
CK ++ + K++D+M I + H +C +LI +Y+ G ++ T +++++
Sbjct: 805 CCCKLKKHNEAAKVVDDM----ICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC 860
Query: 972 GWVAD 976
G+ D
Sbjct: 861 GYYED 865
|
|
| TAIR|locus:2082727 AT3G54980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 238/804 (29%), Positives = 387/804 (48%)
Query: 55 SLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLC 114
SL+ S+K K + V+ +L N+P+ L F+NW G + F L +L
Sbjct: 61 SLL-SAKPEQKDDASVIDVLLNRR--NNPEAALRFYNWARPWRGSFEDGDVFWVLIHILV 117
Query: 115 NS-RLFGAASGVIDRMIATRRSS--YQILESFLMCYRER---NVSGGVVFEMLIDGYRKI 168
+S +G AS ++ R ++T + +L S L+ + V+ F L++ Y K
Sbjct: 118 SSPETYGRASDLLIRYVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRA-FNYLLNAYSK- 175
Query: 169 GFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYT 228
D A+ + + +P N L+ L++ N L ++Y M+ V D T
Sbjct: 176 DRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVT 235
Query: 229 YTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGF 288
L+ A R EEK EA E+ I +G PD YSL V
Sbjct: 236 TQLLMRASLR--------------EEKPA---EALEVLSRAIERGAEPDSLLYSLAVQAC 278
Query: 289 CKNKRLEDAXXXXXXXXXXXXN-PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLN 347
CK L A P++ YT++I +KQGN+ +A RLK+EM++ GI +N
Sbjct: 279 CKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMN 338
Query: 348 LFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLV 407
+ +LI G CK ++ A L +M + G +P++ T++ LIE + M KA E
Sbjct: 339 VVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYK 398
Query: 408 DMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQN 467
M+ L+P+ + + II G + E A ++F+E GL N FV T++ +Q
Sbjct: 399 KMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCNTILSWLCKQG 457
Query: 468 RFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYG 527
+ +EA +L M +G+ P+V YN+++ G C+ K M+ AR + GLKPN YTY
Sbjct: 458 KTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYS 517
Query: 528 AFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLG- 586
I + + Q A M + I N ++Y T+I+G CK G +A M+
Sbjct: 518 ILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEE 577
Query: 587 RGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKE 646
+ + +Y+ +I G + G++ A+ + E+ G+ P+VITY+SL++G CK + +
Sbjct: 578 KRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQ 637
Query: 647 AFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIID 706
A ++ ++M G+ +I Y ALIDG CK +E A LF + +GL P+ Y ++I
Sbjct: 638 ALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLIS 697
Query: 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAS 766
G+ GN+ A L +M G+ D Y TL+DG +DGN+ A L+ EM GL
Sbjct: 698 GFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVP 757
Query: 767 TSS-FNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLL 825
+ ++NGL K + + K+ E+M ++TPN + Y +I H + G + +A L
Sbjct: 758 DEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLH 817
Query: 826 VEMQKRVLKPNFRTYTSLLHGYAG 849
EM + + P+ T+ L+ G G
Sbjct: 818 DEMLDKGILPDGATFDILVSGQVG 841
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 165/536 (30%), Positives = 285/536 (53%)
Query: 259 IDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXXXXXNPNEVVYTT 318
+D+A L M+ P +S ++ K + + N Y+
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 319 LINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLG 378
LIN F ++ L A + +M+ G + N+ T ++L+ G C + I +A L+ +M G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 379 INPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGAC 438
P+T T+N+LI G + N ++A L+ M + P T V++NGLC+ D + A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 439 RVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGL 498
+ +M L+P +Y T+I + ++A+N+ K M KG+ P+V Y+SLIS L
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 499 CKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPND 558
C + DA L +M + P+++T+ A I + K G + A++ + EM+ I P+
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618
+ Y++LI+G C + EA F M+ + PD+ TY+ LI G + ++ E +EVF E
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 619 LQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678
+ +GLV + +TY+ LI G + G A ++ ++M G+ PNI+TYN L+DGLCK+G+
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481
Query: 679 LERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCT 738
LE+A +F+ + + PT+ TY +I+G CK+G + + + L + +GV PD Y T
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541
Query: 739 LVDGCCRDGNMEKALSLFLEMVQKG-LASTSSFNALLNGLCKSQKIFEANKLLEDM 793
++ G CR G+ E+A +LF EM + G L ++ +N L+ + + +L+++M
Sbjct: 542 MISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 198/631 (31%), Positives = 324/631 (51%)
Query: 313 EVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMT 372
E VY + + ++G +QEA + M + + +F+YNA++ + +G ++A +
Sbjct: 76 EGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYM 135
Query: 373 EMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN--LSPTAYTCNVIINGLCR 430
M GI PD ++ ++ + + A LL +M + ++ AY C V+ G
Sbjct: 136 RMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAY-CTVV-GGFYE 193
Query: 431 CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFC 490
+ +F +M+A G+ + L++ ++ +E +L + +GVLP++F
Sbjct: 194 ENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFT 253
Query: 491 YNSLISGLCKAKKMEDA-R--SCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQ 547
YN I GLC+ +++ A R CL+E G KP++ TY I K Q A+ Y
Sbjct: 254 YNLFIQGLCQRGELDGAVRMVGCLIEQ---GPKPDVITYNNLIYGLCKNSKFQEAEVYLG 310
Query: 548 EMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG 607
+M+N G+ P+ Y TLI G+CK G V+ A + G +PD TY LI GL G
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370
Query: 608 KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYN 667
+ + AL +F+E KG+ P+VI Y++LI G QG I EA QL +M E G+ P + T+N
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430
Query: 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR 727
L++GLCK G + A L + +KG P + T+ +I GY + A ++++ M
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490
Query: 728 GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEA 786
GV PD + Y +L++G C+ E + + MV+KG A + +FN LL LC+ +K+ EA
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550
Query: 787 NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKPNFRTYTSLLH 845
LLE+M +K + P+ VT+ LID CK G + A L +M++ + + TY ++H
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610
Query: 846 GYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL 905
+ + LF EMV+R + PDG Y +MVD + K GN+ K + EM G +
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP 670
Query: 906 NQNVYTSLANSLCKEEEFYKVLKLLDEMGDK 936
+ + N LC E+ Y+ ++ M K
Sbjct: 671 SLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 198/664 (29%), Positives = 332/664 (50%)
Query: 260 DEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXXXXXNPNEVVYTTL 319
D L + M G P ++ ++ GF K R++ A + + V+Y
Sbjct: 185 DMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVC 244
Query: 320 INGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGI 379
I+ F K G + A++ +E+ G+K + TY ++IG +CKA +++A + + +
Sbjct: 245 IDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304
Query: 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACR 439
P T YN++I G +AY LL + + P+ N I+ L + ++ A +
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALK 364
Query: 440 VFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLC 499
VFEEM PN Y LI R + + A + M G+ P+V N ++ LC
Sbjct: 365 VFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423
Query: 500 KAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI 559
K++K+++A + EM P+ T+ + I K G + A + +++ML+ N I
Sbjct: 424 KSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483
Query: 560 IYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619
+YT+LI G ++ ++ M+ + PDL+ + + + + G+ + +F E+
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543
Query: 620 QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGEL 679
+ + VPD +YS LI G K GF E ++L M E G + YN +IDG CK G++
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603
Query: 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTL 739
+A +L + + KG PTVVTY ++IDG K L EA+ L E S+ + + +Y +L
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663
Query: 740 VDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798
+DG + G +++A + E++QKGL + ++N+LL+ L K+++I EA + M +
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKC 723
Query: 799 TPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858
TPN VTY ILI+ CK A EMQK+ +KP+ +YT+++ G A G +E A
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783
Query: 859 LFDEMVERGVEPDGVIYSMMVDAYLKEGNM-MKTIKLVDEMFLRGLVLNQNVYTSLANSL 917
LFD G PD Y+ M++ L GN M L +E RGL ++ L ++L
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEG-LSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
Query: 918 CKEE 921
K +
Sbjct: 843 HKND 846
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 224/772 (29%), Positives = 370/772 (47%)
Query: 15 TRTKISRLKSMQFSTSQTSLHSNEEAAKEITNFLNENHWESLIESSKLRNKLNPDVVQSV 74
T+T I R S S+ SL ++ K +T FL + ++ L P+ ++
Sbjct: 4 TKTLIRRSLSTFASSPSDSLLAD----KALT-FLKRHPYQL----HHLSANFTPEAASNL 54
Query: 75 LQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIA-TR 133
L S ND +L F NW + L +L +L+ A + + + A T
Sbjct: 55 LLKSQ-NDQALILKFLNWANPHQFF--TLRCKCITLHILTKFKLYKTAQILAEDVAAKTL 111
Query: 134 RSSYQIL------ESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGS 187
Y L E++ +CY S VF++++ Y ++ +D A + + + G
Sbjct: 112 DDEYASLVFKSLQETYDLCY-----STSSVFDLVVKSYSRLSLIDKALSIVH-LAQAHGF 165
Query: 188 VPGLLCCNSILNDLLRANK-LKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQ 246
+PG+L N++L+ +R+ + + V+ MLE++V+P+V+TY LI AGN
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN----- 220
Query: 247 RVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAXXXXXXXXX 306
ID A L + M KG +P+ TY+ ++DG+CK ++++D
Sbjct: 221 ------------IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMAL 268
Query: 307 XXXNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEK 366
PN + Y +ING ++G ++E + EM G L+ TYN LI G CK G +
Sbjct: 269 KGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ 328
Query: 367 AKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIIN 426
A + EMLR G+ P TY SLI + NM +A E L M+ R L P T +++
Sbjct: 329 ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD 388
Query: 427 GLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLP 486
G + + A RV EM G P+ Y LI H + E+AI +L+ M KG+ P
Sbjct: 389 GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448
Query: 487 DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYF 546
DV Y++++SG C++ +++A EM G+KP+ TY + I+ + + + A +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508
Query: 547 QEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRC 606
+EML G+ P++ YT LI+ +C EG++++A M+ +G+LPD+ TYSVLI+GL++
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568
Query: 607 GKIHEALEVFSELQDKGLVPDVITYS---------------SLISGFCKQGFIKEAFQLH 651
+ EA + +L + VP +TY SLI GFC +G + EA Q+
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF 628
Query: 652 EKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKS 711
E M P+ YN +I G C++G++ +A L+ + G VT ++ K
Sbjct: 629 ESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKE 688
Query: 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKG 763
G + E ++ + + LV+ R+GNM+ L + EM + G
Sbjct: 689 GKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
|
|
| TAIR|locus:2056078 LOJ "LATERAL ORGAN JUNCTION" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 222/804 (27%), Positives = 389/804 (48%)
Query: 51 NHWESLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLA 110
NH L +S+ N ++ V VL NDP L + NW + F L
Sbjct: 63 NH-SPLTSTSETENHVDDARVIEVLLGRR-NDPVSALQYCNWVKPLHRLCEGGDVFWVLI 120
Query: 111 MMLCNS-RLFGAASGVIDRMIATRRSSY-QILESFLMCYRER---NVSGGVVFEMLIDGY 165
+L +S AS ++ ++ + ++ + L+ +R ++ F L++ Y
Sbjct: 121 HILLSSIHTHDRASNLLVMFVSNNPTLIPNVMVNNLVDSSKRFGFELTPRA-FNYLLNAY 179
Query: 166 RKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPD 225
+ +D A+ FG++ D VP + N++L+ L+R+N + ++Y+ M+ V D
Sbjct: 180 IRNKRMD-YAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGD 238
Query: 226 VYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMV 285
T L+ A R E K +EA ++ ++ +G PD +SL V
Sbjct: 239 NVTTQLLMRASLR--------------ERKP---EEAVKIFRRVMSRGAEPDGLLFSLAV 281
Query: 286 DGFCKNKRLEDAXXXXXXXXXXXXNP-NEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI 344
CK L A P ++ YT++I F+K+GN++EA R+ +EMV FGI
Sbjct: 282 QAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGI 341
Query: 345 KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYE 404
+++ +L+ G CK E+ KA L M G+ PD ++ ++E + M KA E
Sbjct: 342 PMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIE 401
Query: 405 LLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHL 464
+ MK ++P++ + +I G + E A +F + + + F+ +
Sbjct: 402 FYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA-HGFMCNKIFLLFC 460
Query: 465 RQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLY 524
+Q + + A + LK M KG+ P+V YN+++ C+ K M+ ARS EM GL+PN +
Sbjct: 461 KQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNF 520
Query: 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584
TY I + K + Q A +M N++IY T+I+G CK G +A + +
Sbjct: 521 TYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNL 580
Query: 585 LG-RGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGF 643
+ + +Y+ +I G + G A+E + E+ + G P+V+T++SLI+GFCK
Sbjct: 581 IKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNR 640
Query: 644 IKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTT 703
+ A ++ +M + ++ Y ALIDG CK +++ A LF + GL P V Y +
Sbjct: 641 MDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNS 700
Query: 704 IIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKG 763
+I G+ G + A L +M + G++ D F Y T++DG +DGN+ A L+ E++ G
Sbjct: 701 LISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLG 760
Query: 764 LASTSSFN-ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAE 822
+ + L+NGL K + +A+K+LE+M K +TPN + Y+ +I H + G + +A
Sbjct: 761 IVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAF 820
Query: 823 HLLVEMQKRVLKPNFRTYTSLLHG 846
L EM ++ + + + L+ G
Sbjct: 821 RLHDEMLEKGIVHDDTVFNLLVSG 844
|
|
| TAIR|locus:2017754 AT1G22960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 170/532 (31%), Positives = 283/532 (53%)
Query: 441 FEEMIACGLKPNNFVYTTLIQAHLRQNRF-EEAINILKGMTGKGVLPDVFCYNSLISGLC 499
FE+MI G P+ +++ LR +R +A + + M G++P V +N+++
Sbjct: 191 FEKMIRKGFLPSVRNCNIVLKV-LRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCF 249
Query: 500 KAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI 559
KA +E +EM ++ + TY I ++K G M+ A R+ +M G A
Sbjct: 250 KAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPY 309
Query: 560 IYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619
+ LI+G+CK+G +A+ ML GI P TY++ I L G+I +A E+ S +
Sbjct: 310 SFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM 369
Query: 620 QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGEL 679
PDV++Y++L+ G+ K G EA L + + I P+IVTYN LIDGLC+SG L
Sbjct: 370 A----APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNL 425
Query: 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTL 739
E A+ L + + + + P V+TYTT++ G+ K+GNL+ A ++ +EM +G+ PD + Y T
Sbjct: 426 EGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTR 485
Query: 740 VDGCCRDGNMEKALSLFLEMVQKG--LASTSSFNALLNGLCKSQKIFEANKLLEDMADKH 797
G R G+ +KA L EMV + +N ++GLCK + +A + +
Sbjct: 486 AVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVG 545
Query: 798 ITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMF 857
+ P+HVTYT +I + + G K A +L EM ++ L P+ TY L++G+A G+ + F
Sbjct: 546 LVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAF 605
Query: 858 ALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917
EM +RGV P+ + ++ ++ K GN+ + + + +M G+ N+ YT L +
Sbjct: 606 QYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKN 665
Query: 918 CKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMI 969
C E++ +V+KL EM DKEI+ T L + E + + FLE ++
Sbjct: 666 CDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHL-EKDHESREVEFLERLL 716
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FIT7 | PP442_ARATH | No assigned EC number | 0.4248 | 0.9466 | 0.9835 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1012 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-44 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-39 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-29 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 1e-44
Identities = 89/356 (25%), Positives = 171/356 (48%), Gaps = 3/356 (0%)
Query: 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML 550
+N L+S ++ ++ A L + GLK + Y I K+G + A F EM+
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 551 NCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610
N G+ N + LIDG + G V +AF + M + + PD ++ LI + G +
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 611 EALEVFSEL--QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668
A +V +E+ + + PD IT +L+ G + A ++++ + E I Y
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG 728
++ + G+ + A ++D + KG+ P V ++ ++D +G+L +AF+++ + +G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 729 VTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEAN 787
+ Y +L+ C N +KAL L+ ++ L T S+ NAL+ LC+ ++ +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 788 KLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843
++L +M + PN +TY+IL+ + LL + ++ +KPN +
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-39
Identities = 101/437 (23%), Positives = 196/437 (44%), Gaps = 17/437 (3%)
Query: 351 YNALIGGICKAGEIEKAKGLMTEMLRLG-INPDTQTYNSLIEGCYRENNMAKAYELLVDM 409
YN L+ + G I+ L+ +M + G ++ D + + C ++ +A +
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ----RAVKEAFRF 428
Query: 410 KKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRF 469
K +PT T N++++ D++GA RV + GLK + +YTTLI + +
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 470 EEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAF 529
+ + M GV +V + +LI G +A ++ A M + +KP+ + A
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 530 IREYTKTGNMQAADRYFQEMLNCG-----IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584
I ++G A DR F + I P+ I L+ G V A ++ +
Sbjct: 549 ISACGQSG---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 585 LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFI 644
I + Y++ ++ S+ G AL ++ +++ KG+ PD + +S+L+ G +
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 645 KEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTI 704
+AF++ + + GI V+Y++L+ + ++A EL++ I + L PTV T +
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 705 IDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764
I C+ L +A ++++EM G+ P+ Y L+ R + + L L + + G+
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 765 ASTSSFNALLNGLCKSQ 781
+ GLC +
Sbjct: 786 KPNLVMCRCITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-38
Identities = 118/528 (22%), Positives = 232/528 (43%), Gaps = 28/528 (5%)
Query: 250 FEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKL 309
F+ +K A+ EAF + + P T+++++ ++ ++ A +L+ + + L
Sbjct: 413 FKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468
Query: 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKG 369
+ +YTTLI+ K G + F + +EMV G++ N+ T+ ALI G +AG++ KA G
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 370 LMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN--LSPTAYTCNVIING 427
M + PD +N+LI C + + +A+++L +MK + P T ++
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 428 LCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPD 487
++ A V++ + +K VYT + + ++ ++ A++I M KGV PD
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 488 VFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQ 547
+++L+ A ++ A L + G+K +Y + + + N + A ++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 548 EMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG 607
++ + + P LI C+ + +A M G+ P+ TYS+L+ R
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 608 KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYN 667
L++ S+ ++ G+ P+++ + G C + F EK C G +V+++
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRF--------EKACALGEP--VVSFD 817
Query: 668 A---LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEM 724
+ I+ S L RE G PT+ + ++ + T +L+ +
Sbjct: 818 SGRPQIENKWTSWALMVYRETISA----GTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873
Query: 725 PSRGVTPDNFVYCTLVDGCCRDGNME-KALSLFLEMVQKGLASTSSFN 771
+ TLVDG G + +A SL E G+ + SF
Sbjct: 874 GISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSFK 918
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-36
Identities = 100/387 (25%), Positives = 187/387 (48%), Gaps = 12/387 (3%)
Query: 592 DLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVP-DVITYSSLISGFCKQGFIKEAFQL 650
Y + L R G+I + +++ +++ +GL+ D I ++ KQ +KEAF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAF-- 426
Query: 651 HEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK 710
+ + P + T+N L+ S +++ A + + GL YTT+I K
Sbjct: 427 --RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSS- 769
SG + F++ +EM + GV + + L+DGC R G + KA + M K +
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 770 FNALLNGLCKSQKIFEANKLLEDM-ADKH-ITPNHVTYTILIDYHCKAGTMKDAEHLLVE 827
FNAL++ +S + A +L +M A+ H I P+H+T L+ AG + A+ +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 828 MQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGN 887
+ + +K YT ++ + G +++D+M ++GV+PD V +S +VD G+
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL--SHATC 945
+ K +++ + +G+ L Y+SL + + + K L+L +++ K IKL + +T
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI--KSIKLRPTVSTM 722
Query: 946 CILISSVYEAGNIDKATRFLESMIKFG 972
LI+++ E + KA L M + G
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLG 749
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 4e-35
Identities = 144/638 (22%), Positives = 250/638 (39%), Gaps = 109/638 (17%)
Query: 287 GFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRL----KNEMVTF 342
C + +LE A LL+ M +L++ +E Y L + ++E R+ + +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 343 GIKL---------------------------NLFTYNALIGGICKAGEIEKAKGLMTEML 375
G++L +LF++N L+GG KAG ++A L ML
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 376 RLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLE 435
G+ PD T+ ++ C ++A+ E+ + + N +I +C D+
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239
Query: 436 GACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLI 495
A VF+ M + + + +I + E + + M V PD+ S+I
Sbjct: 240 SARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295
Query: 496 SGLCKAKKMEDARSCLVEMTA----NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLN 551
S A ++ EM G ++ + I+ Y G+ A++ F M
Sbjct: 296 S----ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-- 349
Query: 552 CGIAPNDII-YTTLIDGHCKEGNVKEAFSTFRCMLGRGILPD------------------ 592
D + +T +I G+ K G +A T+ M + PD
Sbjct: 350 ---ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 593 -------------LKTYSV----LIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLI 635
L +Y V LI S+C I +ALEVF + +K DVI+++S+I
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSII 462
Query: 636 SGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE-----LFDGIF 690
+G EA +M + + PN VT A + + G L +E L GI
Sbjct: 463 AGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 691 AKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNME 750
G P ++D Y + G + A+ N + V N L+ G G
Sbjct: 522 FDGFLP-----NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNI----LLTGYVAHGKGS 571
Query: 751 KALSLFLEMVQKGLASTS-SFNALLNGLCKSQKIFEANKLLEDMADK-HITPNHVTYTIL 808
A+ LF MV+ G+ +F +LL +S + + + M +K ITPN Y +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 809 IDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHG 846
+D +AG + +A + + +M + P+ + +LL+
Sbjct: 632 VDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-33
Identities = 131/601 (21%), Positives = 253/601 (42%), Gaps = 88/601 (14%)
Query: 149 ERNVSGGVVFEMLIDGYRKIGFLDDAA-----IVFFGVVKDGGSVPGLLCCNSILNDLLR 203
ER++ + +L+ GY K G+ D+A +++ GV D + P +L + DL R
Sbjct: 149 ERDL---FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205
Query: 204 ANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAF 263
++ + L+ V +LI + + G+V +A+ V M
Sbjct: 206 GREVHAHVVRFGFELDVDVV------NALITMYVKCGDVVSARLVFDRMP---------- 249
Query: 264 ELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGF 323
DC +++ M+ G+ +N + L M +L ++P+ + T++I+
Sbjct: 250 -----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298
Query: 324 MKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDT 383
G+ + + +V G +++ N+LI G +A+ + + M D
Sbjct: 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354
Query: 384 QTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEE 443
++ ++I G + KA E M++ N+SP T +++ DL+ ++ E
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 444 MIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKK 503
GL V LI+ + + ++A+ + + K DV + S+I+GL +
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNR 470
Query: 504 MEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563
+A +M LKPN T A + + G + +L GI + +
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 564 LIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG 623
L+D + RCG+++ A F+ +K
Sbjct: 530 LLDLYV-----------------------------------RCGRMNYAWNQFN-SHEK- 552
Query: 624 LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAR 683
DV++++ L++G+ G A +L +M ESG+ P+ VT+ +L+ +SG + +
Sbjct: 553 ---DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 684 ELFDGIFAK-GLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742
E F + K +TP + Y ++D ++G LTEA+ +N+MP +TPD V+ L++
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA 666
Query: 743 C 743
C
Sbjct: 667 C 667
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 8e-32
Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 20/355 (5%)
Query: 219 EAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDC 278
EA + D YT+LI+ ++G V D FE+ M++ G+ +
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKV-----------------DAMFEVFHEMVNAGVEANV 507
Query: 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNE 338
T+ ++DG + ++ A M + P+ VV+ LI+ + G + AF + E
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 339 MV--TFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396
M T I + T AL+ AG++++AK + + I + Y + C ++
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 397 NNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVY 456
+ A + DMKK+ + P + +++ DL+ A + ++ G+K Y
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 457 TTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA 516
++L+ A +++A+ + + + + P V N+LI+ LC+ ++ A L EM
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 517 NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKE 571
GL PN TY + + + + GI PN ++ + G C
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 2e-31
Identities = 103/440 (23%), Positives = 199/440 (45%), Gaps = 25/440 (5%)
Query: 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGA-FIREYTKTGNMQAADRYFQEM 549
YN L+ + +++D L +M GL Y A F + K ++ A R+ + +
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 550 LNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKI 609
N P + L+ ++ A R + G+ D K Y+ LI ++ GK+
Sbjct: 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 610 HEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNAL 669
EVF E+ + G+ +V T+ +LI G + G + +AF + M + P+ V +NAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 670 IDGLCKSGELERARELFD-----GIFAKGLTPTVVTYTTIIDGYCKSGNL---TEAFQLV 721
I +SG ++RA FD + P +T ++ +G + E +Q++
Sbjct: 549 ISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 722 NEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSF-NALLNGLCKS 780
+E +G TP+ VY V+ C + G+ + ALS++ +M +KG+ F +AL++ +
Sbjct: 606 HEYNIKG-TPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 781 QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY 840
+ +A ++L+D + I V+Y+ L+ A K A L +++ L+P T
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 841 TSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900
+L+ + + + EM G+ P+ + YS+++ A ++ + + L+ +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 901 RGLVLNQNVYTSLANSLCKE 920
G+ N + + LC
Sbjct: 783 DGIKPNLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-31
Identities = 136/629 (21%), Positives = 254/629 (40%), Gaps = 79/629 (12%)
Query: 352 NALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGC-----YRENNMAKAYELL 406
N+ + +C G++E+A L+ M L + D Y +L C E + + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL- 113
Query: 407 VDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQ 466
+ S N +++ R +L A VF +M + + F + L+ + +
Sbjct: 114 ----SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA 165
Query: 467 NRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTY 526
F+EA+ + M GV PDV+ + ++ + R + G + ++
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 527 GAFIREYTKTGNMQAADRYFQEMLNCGIAPNDII-YTTLIDGHCKEGNVKEAFSTFRCML 585
A I Y K G++ +A F M D I + +I G+ + G E F M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRM-----PRRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 586 GRGILPDLKTYSVLI---------------HGL----------SRC----------GKIH 610
+ PDL T + +I HG S C G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALI 670
EA +VFS ++ K D ++++++ISG+ K G +A + + M + ++P+ +T +++
Sbjct: 341 EAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 671 DGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVT 730
G+L+ +L + KGL VV +I+ Y K + +A ++ + +P + V
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
Query: 731 PDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLN-----GLCKSQKIFE 785
+ +++ G + +AL F +M+ ++ + A L+ G K
Sbjct: 457 S----WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLH 845
A+ L + PN L+D + + G M A + +K V+ N LL
Sbjct: 513 AHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI-----LLT 562
Query: 846 GYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLV 904
GY GK S LF+ MVE GV PD V + ++ A + G + + ++ M + +
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 905 LNQNVYTSLANSLCKEEEFYKVLKLLDEM 933
N Y + + L + + + +++M
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-31
Identities = 95/385 (24%), Positives = 185/385 (48%), Gaps = 11/385 (2%)
Query: 569 CK-EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPD 627
CK + VKEAF + + P L T+++L+ + I AL V +Q+ GL D
Sbjct: 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 628 VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFD 687
Y++LIS K G + F++ +M +G+ N+ T+ ALIDG ++G++ +A +
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 688 GIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG--VTPDNFVYCTLVDGCCR 745
+ +K + P V + +I +SG + AF ++ EM + + PD+ L+ C
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 746 DGNMEKALSLFLEMVQKGLASTSS-FNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT 804
G +++A ++ + + + T + +N + A + +DM K + P+ V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 805 YTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMV 864
++ L+D AG + A +L + +K+ +K +Y+SL+ + + L++++
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 865 ERGVEPDGVIYSMMVDAYLKEGNMM-KTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923
+ P + ++ A L EGN + K ++++ EM GL N Y+ L + ++++
Sbjct: 712 SIKLRPTVSTMNALITA-LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 924 YKVLKLLDEMGDKEIKLSHATC-CI 947
L LL + + IK + C CI
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-31
Identities = 107/483 (22%), Positives = 210/483 (43%), Gaps = 56/483 (11%)
Query: 460 IQAHLRQNRFEEAINILKGMTGKGVLP-DVFCYNSLISGLCKAKKMEDARSCLVEMTANG 518
I+ + R EA+ + + + Y++L+ K + ++ + ++G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 519 LKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAF 578
+P+ Y + + K G + A R F EM N + T+I G GN +EAF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAF 209
Query: 579 STFRCMLGRGILPDLKTYSV-----------------------------------LIHGL 603
+ FR M G + +T+ V LI
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 604 SRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI 663
S+CG I +A VF + +K + ++S+++G+ G+ +EA L+ +M +SG++ +
Sbjct: 270 SKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNE 723
T++ +I + LE A++ G+ G +V T ++D Y K G + +A + +
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 724 MPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS-SFNALLNGLCKSQK 782
MP + + N L+ G G KA+ +F M+ +G+A +F A+L+ S
Sbjct: 386 MPRKNLISWN----ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 783 IFEANKLLEDMADKH-ITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT 841
+ ++ + M++ H I P + Y +I+ + G + +A ++ ++ KP +
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI---RRAPFKPTVNMWA 498
Query: 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGV-IYSMMVDAYLKEGNMMKTIKLVDEMFL 900
+LL I K E+ L E + G+ P+ + Y ++++ Y G + K+V+ +
Sbjct: 499 ALLTA-CRIHKNLELGRLAAEKL-YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556
Query: 901 RGL 903
+GL
Sbjct: 557 KGL 559
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-29
Identities = 87/320 (27%), Positives = 152/320 (47%), Gaps = 25/320 (7%)
Query: 203 RANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAA--------------QRV 248
++ K+ ++V+ M+ A V +V+T+ +LI+ RAG V A RV
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 249 LFEME----EKVGAIDEAFELKESMIH--KGLVPDCFTYSLMVDGFCKNKRLEDAKLLLK 302
+F + GA+D AF++ M + PD T ++ +++ AK + +
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 303 KM--YDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICK 360
+ Y++K P VYT +N ++G+ A + ++M G+K + ++AL+
Sbjct: 604 MIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 361 AGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT 420
AG+++KA ++ + + GI T +Y+SL+ C N KA EL D+K L PT T
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 421 CNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMT 480
N +I LC + L A V EM GL PN Y+ L+ A R++ + +++L
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 481 GKGVLPDVFCYNSLISGLCK 500
G+ P++ + GLC
Sbjct: 782 EDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-25
Identities = 84/393 (21%), Positives = 164/393 (41%), Gaps = 53/393 (13%)
Query: 373 EMLRLG--INPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430
E+L G TY++L+E C
Sbjct: 111 EILEAGCPFTLPASTYDALVEAC-----------------------------------IA 135
Query: 431 CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFC 490
+ V+ + + G +P+ ++ ++ H++ +A + M + ++
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLAS 191
Query: 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML 550
+ ++I GL A +A + EM +G T+ +R G+ +A + +L
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 551 NCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKT--YSVLIHGLSRCGK 608
G+ + + LID + K G++++A F M P+ T ++ ++ G + G
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGY 305
Query: 609 IHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668
EAL ++ E++D G+ D T+S +I F + ++ A Q H + +G +IV A
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG 728
L+D K G +E AR +FD + K L +++ +I GY G T+A ++ M + G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 729 VTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQ 761
V P++ + ++ C G E+ +F M +
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 104/513 (20%), Positives = 210/513 (40%), Gaps = 71/513 (13%)
Query: 331 EAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLI 390
E F + L TY+AL+ I K + + G PD N ++
Sbjct: 108 ELFEILE--AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 391 EGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLK 450
+ + A L +M +RNL + II GL + A +F EM G
Sbjct: 166 LMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSC 510
+ +++A +GL A+ + C
Sbjct: 222 AEPRTFVVMLRA--------------------------------SAGLGSARAGQQLHCC 249
Query: 511 LVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570
+++ G+ + + A I Y+K G+++ A F M + + +++ G+
Sbjct: 250 VLKT---GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYAL 302
Query: 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVIT 630
G +EA + M G+ D T+S++I SR + A + + L G D++
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 631 YSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690
++L+ + K G +++A + ++M N++++NALI G G +A E+F+ +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 691 AKGLTPTVVTYTTIIDGYCKSGNLTEA----FQLVNEMPSRGVTPDNFVYCTLVDGCCRD 746
A+G+ P VT+ ++ C+ L+E FQ ++E + + P Y +++ R+
Sbjct: 419 AEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSE--NHRIKPRAMHYACMIELLGRE 475
Query: 747 GNMEKALSLFLEMVQKGLASTSS--FNALLNGLCKSQKIFEANKL----LEDMADKHITP 800
G +++A + M+++ + + ALL C+ K E +L L M + +
Sbjct: 476 GLLDEAYA----MIRRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLN- 529
Query: 801 NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833
Y +L++ + +G +A ++ ++++ L
Sbjct: 530 ---NYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-21
Identities = 111/506 (21%), Positives = 208/506 (41%), Gaps = 45/506 (8%)
Query: 415 SPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAIN 474
S + + N + LC LE A ++ E M + + Y L + + EE
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107
Query: 475 I----LKGMTGKGV-------------------------LP--DVFCYNSLISGLCKAKK 503
+ L GV +P D+F +N L+ G KA
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167
Query: 504 MEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563
++A M G++P++YT+ +R ++ ++ G + +
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 564 LIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG 623
LI + K G+V A F M R D +++ +I G G+ E LE+F +++
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 624 LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAR 683
+ PD++T +S+IS G + ++H + ++G ++ N+LI G A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 684 ELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743
++F + K V++T +I GY K+G +A + M V+PD +++ C
Sbjct: 344 KVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 744 CRDGNMEKALSLFLEMVQKGLAS-TSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH 802
G+++ + L +KGL S NAL+ K + I +A ++ ++ +K +
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV---- 455
Query: 803 VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862
+++T +I +A +M LKPN T + L A IG +
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 863 MVERGVEPDGVIYSMMVDAYLKEGNM 888
++ G+ DG + + ++D Y++ G M
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRM 540
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-21
Identities = 106/512 (20%), Positives = 196/512 (38%), Gaps = 77/512 (15%)
Query: 223 TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYS 282
T TY +L+ A +++ + V + +E G PD + +
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVES-----------------SGFEPDQYMMN 162
Query: 283 LMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF 342
++ K L DA+ L +M + N + T+I G + GN +EAF L EM
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 343 GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKA 402
G T+ ++ G + L +L+ G+ DT +LI
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI------------ 266
Query: 403 YELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFV--YTTLI 460
DM Y+ +C D+E A VF+ M P + +++
Sbjct: 267 -----DM---------YS---------KCGDIEDARCVFDGM------PEKTTVAWNSML 297
Query: 461 QAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLK 520
+ EEA+ + M GV D F ++ +I + +E A+ + G
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 521 PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAP--NDIIYTTLIDGHCKEGNVKEAF 578
++ A + Y+K G M+ A F M P N I + LI G+ G +A
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAV 411
Query: 579 STFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL-QDKGLVPDVITYSSLISG 637
F M+ G+ P+ T+ ++ G + E+F + ++ + P + Y+ +I
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 638 FCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPT 697
++G + EA+ + + + P + + AL+ LE R + ++ G
Sbjct: 472 LGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEK 527
Query: 698 VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV 729
+ Y +++ Y SG EA ++V + +G+
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 4e-19
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 626 PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK 675
PDV+TY++LI G+CK+G ++EA +L +M + GI PN+ TY+ LIDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 1e-17
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 696 PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCR 745
P VVTY T+IDGYCK G + EA +L NEM RG+ P+ + Y L+DG C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-17
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK 710
P++VTYN LIDG CK G++E A +LF+ + +G+ P V TY+ +IDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-15
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 591 PDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCK 640
PD+ TY+ LI G + GK+ EAL++F+E++ +G+ P+V TYS LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-15
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 311 PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICK 360
P+ V Y TLI+G+ K+G ++EA +L NEM GIK N++TY+ LI G+CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-15
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 381 PDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430
PD TYN+LI+G ++ + +A +L +MKKR + P YT +++I+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 6e-15
Identities = 84/405 (20%), Positives = 156/405 (38%), Gaps = 47/405 (11%)
Query: 565 IDGHCKEGNVKEAFSTFRCMLGRGILP-DLKTYSVLIHGLSRCGKIHEALEVFSELQDKG 623
I+ G +EA F + TY L+ I V+ ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 624 LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAR 683
PD + ++ K G + +A +L ++M E N+ ++ +I GL +G A
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAF 209
Query: 684 ELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743
LF ++ G T+ ++ G+ QL + GV D FV C L+D
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV 803
+ G++E A +F M +K +T ++N++L G EA L +M D ++ +
Sbjct: 270 SKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
Query: 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEM 863
T++I+I + L+E K+ +AG +
Sbjct: 327 TFSIMIRIFSRLA--------LLEHAKQ--------------AHAG-------------L 351
Query: 864 VERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923
+ G D V + +VD Y K G M + D M + L+ + +L
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRG 407
Query: 924 YKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESM 968
K +++ + M + + +H T ++S+ +G ++ +SM
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-14
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 556 PNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSR 605
P+ + Y TLIDG+CK+G V+EA F M RGI P++ TYS+LI GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 3e-13
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 347 NLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYR 395
++ TYN LI G CK G++E+A L EM + GI P+ TY+ LI+G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 3e-13
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTK 535
PDV YN+LI G CK K+E+A EM G+KPN+YTY I K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-13
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 800 PNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYA 848
P+ VTY LID +CK G +++A L EM+KR +KPN TY+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 8e-13
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCK 500
P+ Y TLI + ++ + EEA+ + M +G+ P+V+ Y+ LI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 39/329 (11%)
Query: 161 LIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEA 220
LID Y K G ++DA VF DG + NS+L + +Y M ++
Sbjct: 265 LIDMYSKCGDIEDARCVF-----DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 221 KVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT 280
V+ D +T++ +I R+ ++ ++ A + +I G D
Sbjct: 320 GVSIDQFTFSIMI-------------RIF----SRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP--NEVVYTTLINGFMKQGNLQEAFRLKNE 338
+ +VD + K R+EDA+ + +M P N + + LI G+ G +A +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 339 MVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLR-LGINPDTQTYNSLIEGCYREN 397
M+ G+ N T+ A++ +G E+ + M I P Y +IE RE
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 398 NMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRC-SDLEGACRVFEEMIACG-LKPNNFV 455
+ +AY ++ ++ PT ++ CR +LE E++ G K NN
Sbjct: 477 LLDEAYAMI---RRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLNN-- 530
Query: 456 YTTLIQAHLRQNRFEEAINILKGMTGKGV 484
Y L+ + R EA +++ + KG+
Sbjct: 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-12
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 766 STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814
++N L++G CK K+ EA KL +M + I PN TY+ILID CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 17/67 (25%)
Query: 224 PDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSL 283
PDV TY +LI+ + + G V +EA +L M +G+ P+ +TYS+
Sbjct: 1 PDVVTYNTLIDGYCKKGKV-----------------EEALKLFNEMKKRGIKPNVYTYSI 43
Query: 284 MVDGFCK 290
++DG CK
Sbjct: 44 LIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 2e-12
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 692 KGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725
KGL P VVTY T+IDG C++G + EA +L++EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 3e-12
Identities = 102/489 (20%), Positives = 195/489 (39%), Gaps = 56/489 (11%)
Query: 179 FGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFR 238
+ V+ G P N +L ++ L +++D M E ++ ++ ++I
Sbjct: 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVD 201
Query: 239 AGNVKAAQRVLFEMEEK------------------VGAIDEAFELKESMIHKGLVPDCFT 280
AGN + A + EM E +G+ +L ++ G+V D F
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMV 340
++D + K +EDA+ + M + V + +++ G+ G +EA L EM
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 341 TFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMA 400
G+ ++ FT++ +I + +E AK ++R G D +L++ + M
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 401 KAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLI 460
A + M ++NL + N +I G A +FE MIA G+ PN+ + ++
Sbjct: 378 DARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 461 QAHLRQNRFEEAINILKGMT-GKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGL 519
A E+ I + M+ + P Y +I L + +++A + +
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---F 490
Query: 520 KPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI-IYTTLIDGHCKEGNVKEAF 578
KP + + A + N++ R E L G+ P + Y L++ + G EA
Sbjct: 491 KPTVNMWAALLTACRIHKNLELG-RLAAEKL-YGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
Query: 579 STFRCMLGRG--ILPDL-------KTYSVL----IHGLSR--CGKIHEALEVFSEL---- 619
+ +G + P + +S +H SR K+ E ++ SE
Sbjct: 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608
Query: 620 QDKGLVPDV 628
++ L+PDV
Sbjct: 609 EENELLPDV 617
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-11
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 416 PTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAH 463
P T N +I+G C+ +E A ++F EM G+KPN + Y+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-11
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 731 PDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS-SFNALLNGLCK 779
PD Y TL+DG C+ G +E+AL LF EM ++G+ +++ L++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 7e-11
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 276 PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMK 325
PD TY+ ++DG+CK ++E+A L +M + PN Y+ LI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 622 KGLVPDVITYSSLISGFCKQGFIKEAFQLHEKM 654
KGL PDV+TY++LI G C+ G + EA +L ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (136), Expect = 3e-10
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 657 SGITPNIVTYNALIDGLCKSGELERARELFD 687
G+ P++VTYN LIDGLC++G ++ A EL D
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 1e-09
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 835 PNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK 884
P+ TY +L+ GY GK E LF+EM +RG++P+ YS+++D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 1e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 553 GIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584
G+ P+ + Y TLIDG C+ G V EA M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 8e-08
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 272 KGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKM 304
KGL PD TY+ ++DG C+ R+++A LL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 8e-08
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD 732
VTY T+IDG CK+G + EA +L EM RG+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 9e-08
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 189 PGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAH 236
P ++ N++++ + K++ K+++ M + + P+VYTY+ LI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 9e-08
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 482 KGVLPDVFCYNSLISGLCKAKKMEDARSCLVEM 514
KG+ PDV YN+LI GLC+A ++++A L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 309 LNPNEVVYTTLINGFMKQGNLQEAFRLKNEMV 340
L P+ V Y TLI+G + G + EA L +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 412 RNLSPTAYTCNVIINGLCRCSDLEGACRVFEEM 444
+ L P T N +I+GLCR ++ A + +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 7e-07
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 870 PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCK 919
PD V Y+ ++D Y K+G + + +KL +EM RG+ N Y+ L + LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 7e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 796 KHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829
K + P+ VTY LID C+AG + +A LL EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 8e-07
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 727 RGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMV 760
+G+ PD Y TL+DG CR G +++A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-07
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV 729
VTY ++I GYCK+G L EA +L EM +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI 663
+TY++LI G CK G ++EA +L ++M E GI P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 222 VTPDVYTYTSLINAHFRAGNVKAAQRVLFEME 253
+ PDV TY +LI+ RAG V A +L EME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 419 YTCNVIINGLCRCSDLEGACRVFEEMIACGLKPN 452
T N +I+GLC+ +E A +F+EM G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 342 FGIKLNLFTYNALIGGICKAGEIEKAKGLMTEM 374
G+K ++ TYN LI G+C+AG +++A L+ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 595 TYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV 628
TY+ LI GL + G++ EALE+F E++++G+ PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 489 FCYNSLISGLCKAKKMEDARSCLVEMTANGLKPN 522
YN+LI GLCKA ++E+A EM G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGI 659
+TY+SLISG+CK G ++EA +L ++M E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 6e-06
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 587 RGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618
+G+ PD+ TY+ LI GL R G++ EA+E+ E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 6e-06
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 349 FTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDT 383
TYN LI G+CKAG +E+A L EM GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764
Y +L+ G C+ G +E+AL LF EM +KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTV 698
VTYN LIDGLCK+G +E A ELF + +G+ P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 698 VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTP 731
+ TY ++ K+G+ A ++ EM + G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764
Y TL+DG C+ G +E+AL LF EM ++G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGI 589
+ Y +LI G+CK G ++EA F+ M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD 871
TY +L+ G G+ E LF EM ERG+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 5e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 378 GINPDTQTYNSLIEGCYRENNMAKAYELLVDMK 410
G+ PD TYN+LI+G R + +A ELL +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 7e-05
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 866 RGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM 898
+G++PD V Y+ ++D + G + + ++L+DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 664 VTYNALIDGLCKSGELERARELFDGIFAKGL 694
VTYN+LI G CK+G+LE A ELF + KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 628 VITYSSLISGFCKQGFIKEAFQLHEKMCESGITP 661
+ TY++L+ K G A + E+M SG+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 595 TYSVLIHGLSRCGKIHEALEVFSELQDKGL 624
TY+ LI G + GK+ EALE+F E+++KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 349 FTYNALIGGICKAGEIEKAKGLMTEMLRLGI 379
TYN+LI G CKAG++E+A L EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNE 313
TY+ ++DG CK R+E+A L K+M + + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPD 592
+ Y TLIDG CK G V+EA F+ M RGI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 314 VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLN 347
V Y TLI+G K G ++EA L EM GI+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 314 VVYTTLINGFMKQGNLQEAFRLKNEMVTFGI 344
V Y +LI+G+ K G L+EA L EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 2e-04
Identities = 48/276 (17%), Positives = 89/276 (32%), Gaps = 4/276 (1%)
Query: 200 DLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAI 259
L A L L ++ + ++ +L K+G +
Sbjct: 16 AKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRL 75
Query: 260 DEAFELKESMIHKGLVPDCF-TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTT 318
+EA EL E + L+P+ + + E+A LL+K L +P+
Sbjct: 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALL 135
Query: 319 LINGFMKQGNLQEAFRLKNEMVTFGIKLNLF--TYNALIGGICKAGEIEKAKGLMTEMLR 376
+ + G+ +EA L + + +LN AL + G E+A L+ + L+
Sbjct: 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195
Query: 377 LGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEG 436
L + D + +L + +A E + A + L E
Sbjct: 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYY-EKALELDPDNAEALYNLALLLLELGRYEE 254
Query: 437 ACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEA 472
A E+ + N L+ E+A
Sbjct: 255 ALEALEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 489 FCYNSLISGLCKAKKMEDARSCLVEMTANGL 519
YNSLISG CKA K+E+A EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 454 FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDV 488
Y TLI + R EEA+ + K M +G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 418 AYTCNVIINGLCRCSDLEGACRVFEEMIACGLKP 451
T N ++ L + D + A V EEM A GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 385 TYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTA 418
TYN+LI+G + + +A EL +MK+R + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 419 YTCNVIINGLCRCSDLEGACRVFEEMIACGL 449
T N +I+G C+ LE A +F+EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 593 LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVP 626
L+TY+ L+ L++ G AL V E++ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 226 VYTYTSLINAHFRAGNVKAAQRVLFEMEEK 255
+ TY +L+ A +AG+ A VL EM+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 803 VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835
TY L+ KAG A +L EM+ LKP
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 803 VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836
VTY LID CKAG +++A L EM++R ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGV 868
TY SL+ GY GK E LF EM E+GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP 870
TY +LL A G A+ +EM G++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 488 VFCYNSLISGLCKAKKMEDARSCLVEMTANGLKP 521
+ YN+L+ L KA + A + L EM A+GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 448 GLKPNNFVYTTLIQAHLRQNRFEEAINILKGM 479
GLKP+ Y TLI R R +EA+ +L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 524 YTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPND 558
TY I K G ++ A F+EM GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 385 TYNSLIEGCYRENNMAKAYELLVDMKKRNL 414
TYNSLI G + + +A EL +MK++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 28/158 (17%)
Query: 765 ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHL 824
+ST N+ L LC ++ +A KLLE M + + + Y L
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-------------- 94
Query: 825 LVEMQKRVLKPNFRTYTSLLHGYAGIGKR-----SEMFALFDEMVE------RGVEPDGV 873
L E KR ++ R + L + +G R MF F E+V + E D
Sbjct: 95 LCE-WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF 153
Query: 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYT 911
++++V Y K G + + L M G + +VYT
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAG--VRPDVYT 189
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 910 YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950
Y +L + CK+ + + LKL +EM + IK + T ILI
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 279 FTYSLMVDGFCKNKRLEDAKLLLKKM 304
TY+ ++ G+CK +LE+A L K+M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 YTYTSLINAHFRAGNVKAAQRVLFEMEEK 255
TY SLI+ + +AG ++ A + EM+EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 348 LFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381
L TYNAL+ + KAG+ + A ++ EM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1012 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.58 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.96 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.51 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.31 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.29 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.05 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.98 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.7 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.61 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.5 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.47 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.26 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.99 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.38 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.15 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.0 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.8 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.7 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.57 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.65 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.6 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.53 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.49 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.36 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.21 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.05 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.97 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.53 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 92.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.39 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 91.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.42 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 91.21 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.04 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.86 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.54 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.42 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.26 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.21 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.14 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.87 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.2 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.94 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.42 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.35 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.17 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.12 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.42 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.4 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.83 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.66 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.45 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.25 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.15 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.5 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.4 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.37 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.29 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.22 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.32 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.69 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.55 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.36 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.19 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.16 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-87 Score=813.49 Aligned_cols=753 Identities=19% Similarity=0.278 Sum_probs=675.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 001797 154 GGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLI 233 (1012)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 233 (1012)
+...++.++.+|++.|++++|..+|+.| ...|..|+..+|..++.++.+.+..+.+..++..+...++.+++..+|+++
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 3467899999999999999999999999 888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 001797 234 NAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNE 313 (1012)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 313 (1012)
.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|.++|++|...|+.||.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~---------------------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP---------------------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC---------------------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999999888763 379999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 001797 314 VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGC 393 (1012)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 393 (1012)
+||+.++.+|++.++++.+.+++..|.+.|+.||..+|++||.+|++.|++++|..+|++|. .||.++||++|.+|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~ 263 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGY 263 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 394 YRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAI 473 (1012)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 473 (1012)
++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 474 NILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCG 553 (1012)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (1012)
++|++|.. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 344 ~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999974 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 554 IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSS 633 (1012)
Q Consensus 554 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (1012)
+.|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. +..||..||+.
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 999999999999999999999999999999975 4888999999999999999999999999986 58999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001797 634 LISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGN 713 (1012)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 713 (1012)
++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999987 4799999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 714 LTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 714 ~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~-------------------------------- 617 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-------------------------------- 617 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH--------------------------------
Confidence 999999999999999999999999999999888888887777777653
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-H
Q 001797 794 ADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-G 872 (1012)
Q Consensus 794 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 872 (1012)
+.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+ +.|+ .
T Consensus 618 -~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 618 -KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred -HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 34688999999999999999999999999999884 788999999999999888888888888877775 5663 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH-HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV-YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
..|..+.+.|...|+|++|.++.+.|.+.|+.+++.. |..+- |... .| .......|.....+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~------~~~~----~f--~~~d~~h~~~~~i~----- 754 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK------GKVH----AF--LTDDESHPQIKEIN----- 754 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC------CEEE----EE--ecCCCCCcchHHHH-----
Confidence 5555666778888888888888888887776544322 21110 0000 00 00000223322222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHHHHHHhccccc
Q 001797 952 VYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAIGIADQ 1011 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1012)
+.-.++..+|.+.|++|++....+. +..+++.....|+.++|+||||+.+
T Consensus 755 -------~~l~~l~~~~~~~g~~~~~~~~~~~---~~~~k~~~~~~hse~la~a~~l~~~ 804 (857)
T PLN03077 755 -------TVLEGFYEKMKASGLAGSESSSMDE---IEVSKDDIFCGHSERLAIAFGLINT 804 (857)
T ss_pred -------HHHHHHHHHHHhCCcCCCcchhccc---cHHHHHHHHHhccHHHHHHHhhhcC
Confidence 2234567788999999998765522 4456677888999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-84 Score=790.18 Aligned_cols=711 Identities=20% Similarity=0.275 Sum_probs=678.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 001797 274 LVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNA 353 (1012)
Q Consensus 274 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (1012)
..|+..++|.++.+|++.|++++|..+|+.|.+.|++|+..+|..++..+.+.+.++.|..++..+.+.|..++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 001797 354 LIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSD 433 (1012)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 433 (1012)
|+.+|++.|+++.|..+|++|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001797 434 LEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVE 513 (1012)
Q Consensus 434 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (1012)
++.+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.. ||.++||++|.+|++.|+.++|.++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6899999999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 001797 514 MTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDL 593 (1012)
Q Consensus 514 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 593 (1012)
|.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 001797 594 KTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGL 673 (1012)
Q Consensus 594 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 673 (1012)
.+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+++.|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 674 CKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 674 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++.|++++|.++|++|.+ +|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999999975 5889999999999999999999999999986 59999999999999999999999999
Q ss_pred HHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 754 SLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV 832 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 832 (1012)
+++..+++.+.... .+++.|+.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999998776 89999999999999999999999987 5899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHH
Q 001797 833 LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMV-ERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYT 911 (1012)
Q Consensus 833 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 911 (1012)
+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|.+.|++++|.+++++|. +.||..+|.
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~ 661 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWG 661 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHH
Confidence 99999999999999999999999999999999 58999999999999999999999999999999984 468999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCccC--------hhHHHH
Q 001797 912 SLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGWVAD--------STVMMD 982 (1012)
Q Consensus 912 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~--------~~~~~~ 982 (1012)
+|+.+|..+|+.+.|+...+++.+ ++|++..++.++.+ |...|+|++|.++.+.|.+.|..++ ...+|.
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 999999999999999999999988 89999999999888 8899999999999999999665554 456689
Q ss_pred hhhhhhcccccccccccH----HHHHHhccccc
Q 001797 983 LVKQDQNDANSENTSNSW----KEAAAIGIADQ 1011 (1012)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1011 (1012)
|..+|+.|+..+.++..+ +.+++.|..++
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 999999999998888644 46677776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-69 Score=635.83 Aligned_cols=547 Identities=20% Similarity=0.315 Sum_probs=429.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHH
Q 001797 187 SVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKV-TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFEL 265 (1012)
Q Consensus 187 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~ 265 (1012)
-.++...|..++..|++.|++++|+++|++|...|+ .++..+++.++.+|++.|.+++|..+|+.|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------ 433 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------ 433 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------------
Confidence 345677778888888888888888888888888774 4677777788888888887777766665542
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 001797 266 KESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIK 345 (1012)
Q Consensus 266 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (1012)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||.++|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 434 ---------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 434 ---------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred ---------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence 27888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHH
Q 001797 346 LNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKK--RNLSPTAYTCNV 423 (1012)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ 423 (1012)
||.++|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888875 567788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC
Q 001797 424 IINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKK 503 (1012)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 503 (1012)
+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001797 504 MEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRC 583 (1012)
Q Consensus 504 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 583 (1012)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 584 MLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI 663 (1012)
Q Consensus 584 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 663 (1012)
|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ .+++|..+.+.+..-..
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~---- 818 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS---- 818 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----
Confidence 888888888888888888888888888888888888888888888888888754432 35555554443332110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
.......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..++++|...+..|+..+|+.+++++
T Consensus 819 ------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 ------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred ------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 00111122345677777888777777787777777777777777777777777777777777777777777776
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
.+. .++|..++++|...|..+..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCc
Confidence 432 35777788887777766553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=625.79 Aligned_cols=548 Identities=20% Similarity=0.329 Sum_probs=467.0
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 001797 309 LNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI-KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYN 387 (1012)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 387 (1012)
..++...|..++..+++.|++++|+++|++|...|+ .++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356777788888888888888888888888888875 46777778888888888888888888888863 8888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 388 SLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQN 467 (1012)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 467 (1012)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 001797 468 RFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA--NGLKPNLYTYGAFIREYTKTGNMQAADRY 545 (1012)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 545 (1012)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888876 56788888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001797 546 FQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLV 625 (1012)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (1012)
|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888899999999988888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 626 PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTII 705 (1012)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 705 (1012)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88889999999999999999999999998888888899999999999999999999999999998888889999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. ++++++.++.+.+..-+.. ......+..++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~ 830 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG---------RPQIENKWTSW 830 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc---------ccccccchHHH
Confidence 999999999999999999988889999888888886654 2466666655544432111 11112233467
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999998888889999999999998432 3689999999999
Q ss_pred cCCCCCHH
Q 001797 866 RGVEPDGV 873 (1012)
Q Consensus 866 ~~~~p~~~ 873 (1012)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-62 Score=578.29 Aligned_cols=555 Identities=19% Similarity=0.344 Sum_probs=467.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN-LSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTT 458 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 458 (1012)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456677777888888888888888888877654 567888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCC
Q 001797 459 LIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGN 538 (1012)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 538 (1012)
|+.+|++.|++++|.++|++|.+ ||.++||.++.+|++.|++++|.++|++|.+.|+.|+..||+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888864 68888999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 539 MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618 (1012)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 618 (1012)
.+.+.+++..+.+.|+.+|..+|++|+++|++.|++++|.++|+.|.. +|..+||.++.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864 5899999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001797 619 LQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTV 698 (1012)
Q Consensus 619 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 698 (1012)
|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+++.|+++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 699
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLC 778 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 778 (1012)
.+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~----------------- 454 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE----------------- 454 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999988888888877764
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 779 KSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 779 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
+.|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..
T Consensus 455 ----------------~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 455 ----------------NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred ----------------hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 2468899999999999999999999999998776 478899999999999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC-HHHHHHHHHHHhccccHHHHHHHHHHHhh-
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN-QNVYTSLANSLCKEEEFYKVLKLLDEMGD- 935 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 935 (1012)
+++++.+ +.| +..+|..++++|.+.|++++|.++++.|.++|+... ...|..+.. . ......
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~------~-------~~~f~~~ 580 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK------Q-------DHSFFSG 580 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC------e-------EEEEccC
Confidence 9888874 666 456888888889999999999999988888885422 222211100 0 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHHHHHHhccccc
Q 001797 936 KEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAIGIADQ 1011 (1012)
Q Consensus 936 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1012)
....|..... ++...++.++|.+.|++|++.....-+.. .+.+.....|+.++|+||||+.+
T Consensus 581 d~~h~~~~~i------------~~~l~~l~~~~~~~gy~~~~~~~~~~~~~--~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 581 DRLHPQSREI------------YQKLDELMKEISEYGYVAEENELLPDVDE--DEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCCCccHHHH------------HHHHHHHHHHHHHcCCCCCcchhhccccH--HHHHHHHHhccHHHHHHhhCccC
Confidence 0012221111 24556788899999999998877644433 34567788999999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=568.19 Aligned_cols=473 Identities=20% Similarity=0.279 Sum_probs=424.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001797 155 GVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLIN 234 (1012)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 234 (1012)
...|+.++..|.+.|++++|+++|..|....++.|+..+|+.++.++.+.++++.+..++..|...|+.||+.+||.+++
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35789999999999999999999999943345789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 001797 235 AHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV 314 (1012)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 314 (1012)
+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 167 ~y~k~g~~~~A~~lf~~m~---------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP---------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC---------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 9999999999988888763 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCY 394 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 394 (1012)
+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|. .+|+++||+||.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 395 RENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAIN 474 (1012)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 474 (1012)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 001797 475 ILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLN-CG 553 (1012)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 553 (1012)
+|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999975 688999999999999999999999999999999999999999999999999999999999999975 57
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 554 IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSS 633 (1012)
Q Consensus 554 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (1012)
+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+.++. +..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHH
Confidence 8888888888888888888888888887765 45677777888888888888888877777777654322 4557777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 634 LISGFCKQGFIKEAFQLHEKMCESGIT 660 (1012)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~~~~~~~~ 660 (1012)
++..|++.|++++|.++++.|.+.|+.
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 777777777777777777777777754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=517.75 Aligned_cols=848 Identities=14% Similarity=0.090 Sum_probs=684.8
Q ss_pred ccCChhHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHH
Q 001797 79 HVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVF 158 (1012)
Q Consensus 79 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1012)
..+++..|+..|+-+.. ..+.++.++..++.++...|++++|...+.+++..+|.+. ...
T Consensus 34 ~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~ 93 (899)
T TIGR02917 34 QKNKYKAAIIQLKNALQ--KDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN------------------QVL 93 (899)
T ss_pred HcCChHhHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh------------------hhH
Confidence 35789999999987753 2345788899999999999999999999999987666432 345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 159 EMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFR 238 (1012)
Q Consensus 159 ~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (1012)
..+.++|...|++++|+.+|... ...........+..+...+.+.|++++|...|+++.+..+. +...+..++..+..
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 171 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDELPGK-TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALA 171 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhhccc-ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHH
Confidence 55677778888888888877665 22223334566667777777888888888888888776543 56677777777888
Q ss_pred cCChHHHHHHHHHHHHh-----------------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 239 AGNVKAAQRVLFEMEEK-----------------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLL 301 (1012)
Q Consensus 239 ~g~~~~A~~~~~~~~~~-----------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 301 (1012)
.|++++|..+++++... .|++++|...|++.+...+. +..++..++..+...|++++|...+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887776543 57777788888877776553 6778888888899999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 302 KKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
+.+.+.. +.+...+......+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~ 327 (899)
T TIGR02917 251 DALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PN 327 (899)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998765 3444555556666778899999999999988765 2234455566677888999999999999988763 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001797 382 DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQ 461 (1012)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 461 (1012)
+...+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56677788888999999999999999998776 5677888889999999999999999999988764 345667888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHH
Q 001797 462 AHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQA 541 (1012)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 541 (1012)
.+...|++++|.+.++.+.+..+. .......++..+.+.|++++|..+++++.... +++..++..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 889999999999999988876543 34556667888889999999999999988753 3466788888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 542 ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQD 621 (1012)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 621 (1012)
|...|+++++.. +.+...+..++..+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...+.++..
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 5567778888889999999999999999988764 44778888899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 622 KGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTY 701 (1012)
Q Consensus 622 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 701 (1012)
.++ .+...+..++..+...|++++|..+++.+.+.. +.+..+|..++..+...|++++|...|+++.+.. +.+...+
T Consensus 562 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 653 366778888889999999999999999988753 4567888899999999999999999999988763 3466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
..+...+.+.|++++|...++++.+. .+.+..++..++..+...|++++|..+++.+.+..|.....+..++..+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 88889999999999999999998875 24456788888999999999999999999999988888888889999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFD 861 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 861 (1012)
++++|.+.|+++.+. .|+..++..++..+.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999999999999885 455577788888999999999999999998875 35577788888999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 862 EMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 862 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
++++.. ++++..+..++..+...|+ .+|+.+++++.... |.++..+..++.++...|++++|.+.++++++ ..|+
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~ 869 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPE 869 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 998742 3367788889999999999 88999999998875 66788888999999999999999999999988 4565
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 001797 942 HATCCI-LISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 942 ~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
++..+. +...+.+.|++++|.+++++|++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 554444 44448899999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=509.64 Aligned_cols=867 Identities=14% Similarity=0.083 Sum_probs=737.6
Q ss_pred HHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 001797 87 LGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYR 166 (1012)
Q Consensus 87 l~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 166 (1012)
+-+|-|....+ +...+...+..+...|++++|...+.+.+...|. ++.++..++.+|.
T Consensus 10 ~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------------------~~~~~~~l~~~~~ 67 (899)
T TIGR02917 10 IALALSACGDQ----SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN------------------DAEARFLLGKIYL 67 (899)
T ss_pred HHHHHHhcCCC----CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC------------------CHHHHHHHHHHHH
Confidence 34444554322 6677777888889999999999999998876654 4578889999999
Q ss_pred hcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 001797 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQ 246 (1012)
Q Consensus 167 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (1012)
+.|++++|...|+++ ...+. ++......+..++.+.|++++|...+.+......+.+...+..+...+.+.|++++|.
T Consensus 68 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 145 (899)
T TIGR02917 68 ALGDYAAAEKELRKA-LSLGY-PKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQ 145 (899)
T ss_pred HcCCHHHHHHHHHHH-HHcCC-ChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 44443 3455666778899999999999999987764445556788899999999999999999
Q ss_pred HHHHHHHHh-----------------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001797 247 RVLFEMEEK-----------------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKL 309 (1012)
Q Consensus 247 ~~~~~~~~~-----------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 309 (1012)
..|+++.+. .|++++|.++++++++..+ ++...+..+...+...|++++|...|++..+..
T Consensus 146 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~- 223 (899)
T TIGR02917 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR- 223 (899)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Confidence 999988654 6899999999999988654 477889999999999999999999999998875
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHH
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD-TQTYNS 388 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 388 (1012)
+.+..++..++..+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.+ |+ ...+..
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~ 300 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLL 300 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 6678889999999999999999999999998865 3344455555667778999999999999998864 43 344556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001797 389 LIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNR 468 (1012)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 468 (1012)
+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+...+.+.|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 6677889999999999999999876 5667788889999999999999999999998764 4567889999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 469 FEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQE 548 (1012)
Q Consensus 469 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (1012)
+++|.+.|+++.+..+. +...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|++++|..+++.
T Consensus 379 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 379 FEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999876543 6778888999999999999999999999886533 334556678889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001797 549 MLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV 628 (1012)
Q Consensus 549 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 628 (1012)
+.... +++..++..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.|+++....+. +.
T Consensus 457 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 533 (899)
T TIGR02917 457 LEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NL 533 (899)
T ss_pred HHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cH
Confidence 98764 6678899999999999999999999999998764 446778888999999999999999999999987543 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001797 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGY 708 (1012)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 708 (1012)
.++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++++... .+.+...|..+...+
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 889999999999999999999999998874 446778889999999999999999999999876 355778999999999
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 709 CKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++++..|.+..++..++..+...|++++|.+
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998752 44667888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 001797 789 LLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGV 868 (1012)
Q Consensus 789 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 868 (1012)
+++.+.+.+ +++...+..++..+...|++++|...|+++... .|+..++..++.++.+.|++++|.+.++++++. .
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-H 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 999998864 557778889999999999999999999999874 466677888999999999999999999999974 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 869 EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 869 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+.+...+..++..|...|++++|.+.|+++.+.. |+++.++..++.++...|+ .+|++.++++.+ ..|+++..+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~ 842 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDT 842 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHH
Confidence 3377888899999999999999999999999986 7789999999999999999 889999999988 67888777666
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHH
Q 001797 949 ISS-VYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWK 1001 (1012)
Q Consensus 949 l~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1012)
++. +...|++++|.++++++++.+-. +...+..+...-...+....+...++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555 78999999999999999997743 44455555555555555444444333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-30 Score=318.60 Aligned_cols=646 Identities=12% Similarity=0.048 Sum_probs=441.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------------CcCHHHHH
Q 001797 288 FCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI---------------KLNLFTYN 352 (1012)
Q Consensus 288 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------~~~~~~~~ 352 (1012)
.-..++.+.|.+.++++.... +.|..++..++..+...|+.++|.+.+++..+... .|+.....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHH
Confidence 334555555555555555443 33445555555555555555555555555555431 11222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 001797 353 ALIGGICKAGEIEKAKGLMTEMLRLGINPDTQT-YNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRC 431 (1012)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 431 (1012)
.+...+.+.|++++|...|+++.+.+ +|+... ...........|+.++|++.++++.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 44456777788888888888877653 233211 1111111224578888888888888775 55666777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 001797 432 SDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDV-FCYNSLISGLCKAKKMEDARSC 510 (1012)
Q Consensus 432 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 510 (1012)
|++++|+..++++.... +.. ...+...+..+...+..++. ..+...+..+-.....+.|...
T Consensus 195 g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 88888888888876532 110 01111122222222211111 1222222222222334556666
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 001797 511 LVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGIL 590 (1012)
Q Consensus 511 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 590 (1012)
+..+......|+... ......+...|++++|...|++.++.. +.+..++..+...+.+.|++++|+..|++.++....
T Consensus 258 L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 258 LAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 655544322333221 233556677888888888888888764 456778888888888888888888888888765322
Q ss_pred C-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 591 P-DLKTY------------SVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCES 657 (1012)
Q Consensus 591 ~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 657 (1012)
. ....| ......+.+.|++++|+..|++++...+. +...+..+...+...|++++|++.|+++++.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 11111 12245677889999999999999887543 6667778888899999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 001797 658 GITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLT--------PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV 729 (1012)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 729 (1012)
. +.+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|++.+++.++.
T Consensus 415 ~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-- 490 (1157)
T PRK11447 415 D-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-- 490 (1157)
T ss_pred C-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 4 334556667777664 45789998888765432100 01224556677888999999999999999885
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-----
Q 001797 730 TP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV----- 803 (1012)
Q Consensus 730 ~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----- 803 (1012)
.| +...+..+...|...|++++|...++++++..|.++..+..++..+.+.|++++|+..++.+......++..
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 44 455778889999999999999999999999999888888888888889999999999998875432222221
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 001797 804 ----TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMM 878 (1012)
Q Consensus 804 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 878 (1012)
.+..++..+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++++ ..| +...+..+
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~l 643 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGL 643 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 233456778899999999999872 345666788899999999999999999999997 455 67888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH------HHH-HHHHH
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA------TCC-ILISS 951 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~-~ll~~ 951 (1012)
+.+|...|++++|++.++++++.. |.+...+..++.++...|++++|.+.+++++.. .|+.+ ..+ .+...
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ--AKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh--CccCCcchhhHHHHHHHHHH
Confidence 999999999999999999998775 567888999999999999999999999999873 33222 122 22333
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001797 952 VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~ 970 (1012)
+...|++++|+..|++.+.
T Consensus 721 ~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 6789999999999999975
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-28 Score=308.63 Aligned_cols=662 Identities=11% Similarity=0.038 Sum_probs=306.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001797 157 VFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVP-GLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINA 235 (1012)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 235 (1012)
.+...++.+...++.+.|.+.+.++. . +.| +......+...+.+.|+.++|...++++.+..+. +...+. +-..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~-~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~-~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLE-L--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRS-SRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHH-c--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHH-HHHH
Confidence 34556666777777777777777662 1 223 3455555666666677777777777776665432 222111 1111
Q ss_pred HHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-
Q 001797 236 HFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV- 314 (1012)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 314 (1012)
+.. ..|+......+...+.+.|++++|.+.|+++.+.+ +|+..
T Consensus 105 ~~~-----------------------------------~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~l 148 (1157)
T PRK11447 105 MLL-----------------------------------STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDL 148 (1157)
T ss_pred HHh-----------------------------------cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHH
Confidence 110 01122222233333444445555554444444332 22211
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLG---------------- 378 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------- 378 (1012)
....+.......|+.++|+..++++.+.. +.+...+..+...+...|+.++|...++++....
T Consensus 149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 149 AVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 00000011112344444555554444432 2233344444444444445555555444443321
Q ss_pred --CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001797 379 --INPD-TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFV 455 (1012)
Q Consensus 379 --~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 455 (1012)
..++ ...+...+..+-.....+.|...+.++......|+.. .......+...|++++|+..|++.++.. +.+..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 0110 0111111111112222334444444433322122211 1223444555666666666666665542 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 001797 456 YTTLIQAHLRQNRFEEAINILKGMTGKGVLPD-VFCYN------------SLISGLCKAKKMEDARSCLVEMTANGLKPN 522 (1012)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 522 (1012)
+..|...+.+.|++++|+..|++..+..+... ...|. .+...+.+.|++++|...|+++..... .+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 55566666666666666666666555432211 11111 112233444555555555554444321 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 523 LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHG 602 (1012)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 602 (1012)
...+..+...+...|++++|.+.|+++++.. +.+...+..+...|. .++.++|...++.+.... +.. ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~--~~~--~~----- 453 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ--RRS--ID----- 453 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--HHH--HH-----
Confidence 3333444444444555555555555544432 223333333333332 233444444443322110 000 00
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 603 LSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 682 (1012)
.. .. ......+..+...+...|++++|+..+++.++.. +.+...+..+...|.+.|++++|
T Consensus 454 ---------------~~-~~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 454 ---------------DI-ER--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred ---------------HH-HH--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 00 0011223344445555555555555555555542 11344445555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH---------HHHHHHHHHHhcCCHHHHH
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF---------VYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~---------~~~~l~~~~~~~g~~~~A~ 753 (1012)
...++++.... +.+...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555555431 1123333333333445555555555555544322222111 1223445556666666666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
.+++ ..|.++..+..++..+.+.|++++|++.|+++++. -+.+...+..++..+...|++++|++.++++.+. .
T Consensus 594 ~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~ 667 (1157)
T PRK11447 594 ALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-A 667 (1157)
T ss_pred HHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-C
Confidence 6655 34555556666666677777777777777766664 1234556666666666677777777776666542 1
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 834 KPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGV--EP---DGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 834 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+.+...+..++.++...|++++|.+++++++.... .| +...+..++..+...|++++|+..|++++.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22344555566666667777777777776665211 11 113444556666667777777777766653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-25 Score=266.79 Aligned_cols=655 Identities=12% Similarity=0.069 Sum_probs=438.8
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
|++++|+..|++.++..+. +..++..+...|.+.|++++|+..+++..+.. +.|...+..+ ..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 4445555555556656655 47788889999999999999999999999864 3344444444 222 8999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHHH
Q 001797 337 NEMVTFGIKLNLFTYNALIGG--------ICKAGEIEKAKGLMTEMLRLGINPDTQTYNSL-IEGCYRENNMAKAYELLV 407 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~ 407 (1012)
+++.+.. +-+..++..+... |.+. ++|...++ .......|+..+.... ...|.+.|++++|++++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999874 3345555555554 6555 44555554 3332234445544444 889999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-
Q 001797 408 DMKKRNLSPTAYTCNVIINGLCR-CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL- 485 (1012)
Q Consensus 408 ~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 485 (1012)
++.+.+ +.+..-...|...|.. .++ +++..+++. .++.+...+..++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999987 5556667778888887 477 888888554 23467888899999999999999999999987654222
Q ss_pred CCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 486 PDVFCYNSLISGLCKAKKME-DARSCLVEMTANGLKPNL-YTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 563 (1012)
|+..+|--+ +.+.+... .|..-|.+ . ..++. .....++..+.+.++++.+.++.. +.|.... .
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~ 345 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--L 345 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--H
Confidence 344443333 33444332 12111211 0 11111 112234677788888886665522 2333222 1
Q ss_pred HHHH-H-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 001797 564 LIDG-H-CKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDK-G-LVPDVITYSSLISGFC 639 (1012)
Q Consensus 564 li~~-~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~ 639 (1012)
.+.. + ...+...++...++.|.... +.+......+.-...+.|+.++|..+|...... + ..++.....-++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 2222 2 23366777777777777652 336666666666778889999999999887762 1 2224445557778888
Q ss_pred hcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 001797 640 KQGFI---KEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA---RELFDGIFAKGLTP--TVVTYTTIIDGYCKS 711 (1012)
Q Consensus 640 ~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~p--~~~~~~~li~~~~~~ 711 (1012)
+.+.. .++..+-..+ +...- +.-.|+..++ ...+...... .++ +...|..+..++..
T Consensus 425 ~~~~~~~~~~~~~l~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 425 SHPYLATPAKVAILSKPL-------PLAEQ------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred hCCcccchHHHHHhcccc-------ccchh------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-
Confidence 87763 3333332211 11111 1112333333 3333333332 133 56677777777766
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
+++++|+..+.+.... .|+......+...+...|++++|...|+++....+. ...+..++..+.+.|+.++|...++
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7888888888777764 466555444555556889999999999887665444 3456677888888999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-
Q 001797 792 DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP- 870 (1012)
Q Consensus 792 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 870 (1012)
+.++.. ++....+..+.....+.|++++|...+++..+ ..|+...|..++..+.+.|++++|+..++++++ ..|
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd 641 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPN 641 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 888753 22333333444444566999999999988886 456777888888889999999999999999886 556
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
+...+..++.++...|++++|+..++++++.. |.++.++..++.++...|++++|+..++++++ +.|+......-..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g 718 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTP 718 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhh
Confidence 56677788888899999999999999998886 67788899999999999999999999999987 7788766666555
Q ss_pred H-HHhcCCHHHHHHHHHHHHH
Q 001797 951 S-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 951 ~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
. .....+++.|.+-+++...
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 5 4556667777777766655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-25 Score=264.70 Aligned_cols=262 Identities=10% Similarity=-0.024 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...++++... +|+...+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3344444444443 4455555544444443 233322222233334455555555555554332 2333333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAE 822 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 822 (1012)
+...|++++|...++++++..|.....+..++......|++++|...+++.++ ..|+...+..++.++.+.|++++|+
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555555555444443333333333344555555555555554 2344445555555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
..+++..+. .+.+...+..++..+...|++++|+..++++++ ..| ++..+..++.++...|++++|+..++++++.
T Consensus 630 ~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 630 SDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555542 122334445555555555555555555555554 333 3444555555555555555555555555555
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
. |.+..+....+....+..+++.|.+.+.+...
T Consensus 707 ~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 707 I-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred C-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4 33445555555555555555555555555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-25 Score=244.03 Aligned_cols=698 Identities=13% Similarity=0.089 Sum_probs=511.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCC---HhHHHHHHHHHHhcC-----------ChhHHHHHHHH
Q 001797 277 DCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKL----NPN---EVVYTTLINGFMKQG-----------NLQEAFRLKNE 338 (1012)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~---~~~~~~li~~~~~~g-----------~~~~A~~~~~~ 338 (1012)
-..+|..+...|++.|..++.+.+++.-..... .++ ...++.+...|...+ ....|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 456799999999999999999999988762110 111 122333333332221 13345555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C
Q 001797 339 MVTFGIKLNLFTYNALIGGICKAGE--IEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN--L 414 (1012)
Q Consensus 339 m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~ 414 (1012)
+-......+.. +..-...|...|+ ++.|...|....+.. ++|+..+-.-.......|++..|+.+|....... .
T Consensus 120 A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 54332221211 1111123334444 589999999999874 4455555444455567899999999999976554 3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHHH
Q 001797 415 SPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPN-NFVYTTLIQAHLR---QNRFEEAINILKGMTGKGVLPDVFC 490 (1012)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 490 (1012)
+||+ ...+..++.+.|+.+.|+..|.++++.+ |+ +.++-.|...-.. ...+..++.++...-..... +++.
T Consensus 198 ~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~ 272 (1018)
T KOG2002|consen 198 KADV--RIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVA 272 (1018)
T ss_pred CCCc--cchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHH
Confidence 3443 3445577789999999999999999864 43 3333333332222 23456777777766554433 7788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001797 491 YNSLISGLCKAKKMEDARSCLVEMTANGLK--PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGH 568 (1012)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 568 (1012)
.+.|...|.-.|++..+..+...+...... .-...|..+.++|...|+++.|..+|.+..+.....-...+..++..|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 999999999999999999999988875321 123457889999999999999999999998865222255667889999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 569 CKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG----KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFI 644 (1012)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 644 (1012)
.+.|+++.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+... +.
T Consensus 353 i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~ 429 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DP 429 (1018)
T ss_pred HHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-Ch
Confidence 9999999999999999987 3446777777877777775 5677888888877764 33777887777766554 44
Q ss_pred HHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHHc
Q 001797 645 KEAFQLHEKMC----ESGITPNIVTYNALIDGLCKSGELERARELFDGIFAK---GLTPTV------VTYTTIIDGYCKS 711 (1012)
Q Consensus 645 ~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~ 711 (1012)
..++..|..+. ..+..+.+...|.+...+...|++++|...|++.... ...++. .+-..+...+-..
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 44477766544 4455577889999999999999999999999998865 112222 2233455666778
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLL 790 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 790 (1012)
++.+.|.+.|..+.+. .|..+ .|..++......++..+|...+..+++.+..++.++..++..|.+...+..|.+-|
T Consensus 510 ~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 8999999999999985 56655 45555533345578999999999999999999999999999999999999999988
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHH
Q 001797 791 EDMADKHI-TPNHVTYTILIDYHC------------KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMF 857 (1012)
Q Consensus 791 ~~~~~~~~-~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 857 (1012)
+...+... .+|..+...|++.+. ..+..++|+++|.+.+.. .+-|...-+.++-+++..|++.+|.
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHH
Confidence 88766432 257777777777654 235678899999998874 3447777888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhC
Q 001797 858 ALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 858 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.+|.++.+.. .....+|.+++.+|...|++..|+++|+.++++-.+ .+..+...|+.++.+.|++.+|.+.+..+..
T Consensus 667 dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~- 744 (1018)
T KOG2002|consen 667 DIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH- 744 (1018)
T ss_pred HHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 9999998843 335678999999999999999999999999998543 5789999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHH----HH----------------hcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcc
Q 001797 937 EIKLSHATCCILISS----VY----------------EAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQND 990 (1012)
Q Consensus 937 g~~p~~~~~~~ll~~----~~----------------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 990 (1012)
..|.++.....++. ++ ..+..++|.++|..|-+.+-.+-+.+...--.++|.+
T Consensus 745 -~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c~~ 817 (1018)
T KOG2002|consen 745 -LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKTVIAQEAQLCKD 817 (1018)
T ss_pred -hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 78988876654433 11 2234678899999999988777777776666666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-22 Score=221.08 Aligned_cols=595 Identities=15% Similarity=0.093 Sum_probs=441.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 294 LEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF--GIKLNLFTYNALIGGICKAGEIEKAKGLM 371 (1012)
Q Consensus 294 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (1012)
++.|...|..+.+.. ++|+-.+..-....+..|+|..|+.+|..+... ..+||+.. .+.+++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 589999999999875 667666655555567889999999999997654 34455432 2345666999999999999
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 372 TEMLRLGINPD-TQTYNSLIEGCY---RENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIAC 447 (1012)
Q Consensus 372 ~~m~~~g~~p~-~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 447 (1012)
.+..+. .|+ +.++-.|...-. ....+..+..++...-..+ +.|++..+.|.+.|.-.|++..++.+...+...
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999986 443 333333322222 2244677888888877766 678899999999999999999999999998875
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhh
Q 001797 448 GLKP--NNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYT 525 (1012)
Q Consensus 448 g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 525 (1012)
...- -...|..+.++|-..|++++|...|-+..+.....-+..+--+.+.|.+.|+++.+...|+...+.. +.+..|
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 4211 1346888999999999999999999888776433224456667889999999999999999998863 225567
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHH
Q 001797 526 YGAFIREYTKTG----NMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCML----GRGILPDLKTYS 597 (1012)
Q Consensus 526 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 597 (1012)
...|...|...+ ..+.|..++...++.- +.|...|..+...+....-+. ++..|..+. ..+..+.+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 5678888888887764 678888988888776655443 366666543 345557788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDK---GLVPDV------ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+...+...|.+.+|...|...... ...+|. .+-..+...+-..++++.|.+.|..+++.. +.-+..|..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence 9999999999999999999987755 112222 233445666677889999999999999873 323445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHh--
Q 001797 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCR-- 745 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~-- 745 (1012)
++.+....+...+|...++.+.... ..+...+..+...+.+...+..|.+-|+.+.+.- ..+|..+..+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5544455678889999999988752 3355566667778888888888888666655431 23677787888886642
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 746 ----------DGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA 815 (1012)
Q Consensus 746 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 815 (1012)
.+..++|+.+|.++++.+|.+..+-+.++-+++..|++.+|..+|.++.+.. .....+|.+++++|...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 2356789999999999999999999999999999999999999999998863 34566889999999999
Q ss_pred CCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh---------
Q 001797 816 GTMKDAEHLLVEMQKR-VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLK--------- 884 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--------- 884 (1012)
|++..|++.|+...+. ....+..+...|++++...|.+.+|.+.+..+.. ..| +.....+++-...+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcc
Confidence 9999999999987763 3344677888999999999999999999888876 444 33333333322221
Q ss_pred ----------cCChHHHHHHHHHHHHcC
Q 001797 885 ----------EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 885 ----------~g~~~~A~~~~~~~~~~~ 902 (1012)
.+..+.|.++|..+...+
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 234566777777776665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=225.86 Aligned_cols=439 Identities=14% Similarity=0.135 Sum_probs=354.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001797 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570 (1012)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 570 (1012)
...|..-..+.|++++|++.-...-..+.. +....-.+-.++.+..+++.....-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 344555566777777777765544333211 22233333445556666666555555555443 4556788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 001797 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITY-SSLISGFCKQGFIKEAFQ 649 (1012)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 649 (1012)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999888863 336778888999999999999999999888875 4554433 334444556899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 001797 650 LHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPT-VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG 728 (1012)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 728 (1012)
.+.+.++.. +.=.+.|+.|...+..+|+...|+..|++.+.. .|+ ...|-.|...|...+.+++|+..|.+...
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-- 280 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-- 280 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--
Confidence 999998863 223667899999999999999999999999875 444 46788899999999999999999999887
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHH
Q 001797 729 VTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYT 806 (1012)
Q Consensus 729 ~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 806 (1012)
..|+. +.+..+...|...|..+-|+..|+++++..|..+.+|+.|+.++-..|+..+|...|++.+.. .| -..+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 45654 578888888999999999999999999999999999999999999999999999999999984 44 456889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPN-FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLK 884 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 884 (1012)
.|...|...|.+++|..+|.+..+ +.|. ...++.|...|-.+|++++|+..|++++. +.|+ ...+.+++..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 999999999999999999999987 4554 45788999999999999999999999995 8886 4789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
.|+.+.|+..|.+++..+ |.-..++..|+.+|...|++.+|+..|+.+++ ++|+.+..+-.
T Consensus 435 ~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cN 495 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCN 495 (966)
T ss_pred hhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhH
Confidence 999999999999999986 44578899999999999999999999999998 89988765543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=220.55 Aligned_cols=449 Identities=17% Similarity=0.186 Sum_probs=331.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcC
Q 001797 458 TLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTG 537 (1012)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 537 (1012)
.|..-..+.|++.+|++.....-..+.. +....-.+-.++.+..+++.....-....+.. +--..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 3444445566666666654433332211 11122222333444445554443333333321 123456777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 001797 538 NMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKT-YSVLIHGLSRCGKIHEALEVF 616 (1012)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 616 (1012)
++++|+.+++.+++.. +.....|..+..++...|+.+.|...|...+.. .|+... .+.+...+-..|+..+|...|
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888887777754 445677778888888888888888888777765 344433 333455556678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001797 617 SELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN-IVTYNALIDGLCKSGELERARELFDGIFAKGLT 695 (1012)
Q Consensus 617 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 695 (1012)
.+.++..+. =.+.|+.|...+-.+|+...|++.|++.++. .|+ ...|..|...|...+.+++|...|.+.... .
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 887765322 3466888888888889999999999988875 444 567888889999999999999998888765 3
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHH
Q 001797 696 P-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNAL 773 (1012)
Q Consensus 696 p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 773 (1012)
| ..+.+..+...|..+|.+|-|+..|++.++ ..|+- ..|+.|.+++-..|+..+|...|.+++...|....+.+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4 456677777788899999999999999887 45654 4799999999999999999999999999999888999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHITPN-HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIG 851 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 851 (1012)
+.+|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..|++.+. +.|+. ..|+.++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999887 4554 45788899999999999999999998885 67764 48889999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 852 KRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
+.+.|+..+.+++. +.|. .+...+|+..|-..|+..+|+..|+.+++.. |+-+.+|..++.++.--.+|.+
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccc
Confidence 99999999999885 6774 4678889999999999999999999999886 5557788887766554444433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-19 Score=214.09 Aligned_cols=428 Identities=12% Similarity=0.038 Sum_probs=259.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEG 572 (1012)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 572 (1012)
.....+.+.|++++|+..|.+.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3344455555566665555555543 3444555555666666666666666666666543 334555666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 573 NVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHE 652 (1012)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (1012)
++++|+..|..+...+...+. ....++..+.. ..+........+... ++...+..+.. +...........-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 666666665544433211111 11111111111 112222222222211 11111121211 111111111111111
Q ss_pred HHHHCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 001797 653 KMCESGITPN-IVTYNALIDG---LCKSGELERARELFDGIFAKG-LTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPS 726 (1012)
Q Consensus 653 ~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 726 (1012)
...+. .++ ...+..+... ....+++++|.+.|++.+..+ ..| ....|..+...+...|++++|+..+++.+.
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 111 0111111111 123467888888888888753 122 345677777778888888888888888877
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 727 RGVTPD-NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTY 805 (1012)
Q Consensus 727 ~~~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 805 (1012)
. .|+ ...|..+...+...|++++|+..|+++++.+|..+.++..++..+...|++++|...|++.++.. +.+...+
T Consensus 360 l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 4 454 44777788888888888888888888888888888888888888888888888888888888742 3345677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HH-------HHH
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VI-------YSM 877 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~ 877 (1012)
..++..+.+.|++++|+..|++.++. .+.+...+..++..+...|++++|++.|+++++ +.|+. .. +..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHH
Confidence 77888888888888888888888764 333566788888888888888888888888886 33321 11 111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
....+...|++++|.+++++++... |.+..++..++.++...|++++|++.++++.+ +.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE--LART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--Hhcc
Confidence 1222334688999999998888876 55667788889999999999999999988876 4444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-17 Score=170.38 Aligned_cols=617 Identities=13% Similarity=0.088 Sum_probs=313.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 292 KRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLM 371 (1012)
Q Consensus 292 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (1012)
++..+|+.++..+.+.+ +.+...|.+-...--..|++..|..+..+=.+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 46677888888888776 445556655555555667777777666544332 34444444332 2555666677777
Q ss_pred HHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 372 TEMLRLGINP-DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLK 450 (1012)
Q Consensus 372 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 450 (1012)
...++. .| ++..|-..+.. ..+...=..++++.++.- |.++..|-. .....+.++|.-++.+.++. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~i-P~sv~LWKa----AVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAADL---ESDTKNKKRVLRKALEHI-PRSVRLWKA----AVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHhC-CchHHHHHH----HHhccChHHHHHHHHHHHHh-cc
Confidence 777664 34 33344322221 122333345666666652 444444433 33456666677777777764 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCCCchhhH
Q 001797 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEM----TANGLKPNLYTY 526 (1012)
Q Consensus 451 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~ 526 (1012)
.+...|. +|.+..-++.|..++++..+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3333343 445666677777777777765 3336666666555556677777766666542 334555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 527 GAFIREYTKTGNMQAADRYFQEMLNCGIAPN--DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLS 604 (1012)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 604 (1012)
..=...+-..|..-.+..+....+..|+... ..+|+.-.+.|.+.+.++-|..+|...++. .+.+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 5555555555555555555555554443322 234555555555555555555555555543 2223344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|..++-..+|.+....-+ .....|......+-..|+...|..++....+.. +.+...|..-+........++.|+.
T Consensus 562 ~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 44555555555555554421 133333333444444555555555555555442 2244445444555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKG 763 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 763 (1012)
+|.+.... .|+...|.--+...--.++.++|.+++++.++. -|+. ..|..+.+.+-+.++.+.|.+.|..-++..
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 55554442 344444444444444445555555555555442 2232 244445555555555555555555555555
Q ss_pred CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 001797 764 LASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843 (1012)
Q Consensus 764 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 843 (1012)
|..+..|..|+..-.+.|++-.|..++++..-++ +.+...|...|..-.+.|+.+.|..+..++++. ++.+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 5555555555555555555555555555544331 234445555555555555555555555544443 33333444444
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+....+.++-......+++ ..-|+.+....+..+....++++|.+.|.++++.+ |....+|..+...+..+|.-
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCH
Confidence 4443333332222222221 22233344444444555555555555555555554 34445555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH
Q 001797 924 YKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
++-.+++.+... .+|.....|.
T Consensus 868 ed~kev~~~c~~--~EP~hG~~W~ 889 (913)
T KOG0495|consen 868 EDQKEVLKKCET--AEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHhc--cCCCCCcHHH
Confidence 555555555544 4454444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-17 Score=168.76 Aligned_cols=610 Identities=13% Similarity=0.078 Sum_probs=482.7
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 326 QGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYEL 405 (1012)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (1012)
.+|..+|..+++...+.+ +.++..|-+-...--..|++..|+.+..+-.+. ++.+...|-.- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 357889999999998876 445666666666666788888888887765554 34455566433 345566778777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 001797 406 LVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL 485 (1012)
Q Consensus 406 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (1012)
.-..+... |.++..|.-.++. ..+...-.+++++.++. ++.++..|-.. ......+.|..++.+..+.- +
T Consensus 338 vA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p 407 (913)
T KOG0495|consen 338 VANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-P 407 (913)
T ss_pred HHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-c
Confidence 77777663 4444444333221 23444556788888775 34445555443 34566777999999888752 1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHH
Q 001797 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML----NCGIAPNDIIY 561 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 561 (1012)
.+. -|.-+|.+..-++.|..++++..+. ++.+...|.+-...--.+|+.+...+++.+.+ ..|+..+...|
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 133 3455677888899999999998876 56688888887777778899999888887654 56788888889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPD--LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFC 639 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 639 (1012)
..=...+-..|..--+..+....+..|+... -.+|+.-...|.+.+.++-|..+|...++--+ -+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHH
Confidence 8888889899999999999999888776543 35788888999999999999999999887632 36667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001797 640 KQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQ 719 (1012)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 719 (1012)
..|..+.-..+|+++... ++-....|.....-+...|++..|+.++..+.+.+ +.+...|..-+.......++++|..
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 789999999999999986 45566778788888889999999999999999874 3377889999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 001797 720 LVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHIT 799 (1012)
Q Consensus 720 l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 799 (1012)
+|.+... ..|...+|..-+......++.++|++++++.++..|.....|..+++++.+.++++.|.+.|..-.+. ++
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9999887 57788888888888888999999999999999999999999999999999999999999999988764 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001797 800 PNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMV 879 (1012)
Q Consensus 800 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 879 (1012)
..+..|..|...-.+.|.+-.|..++++..-. .+.+...|...++.-.+.|+.++|..+..++++. .+.+...|..-+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 56778999999999999999999999998765 3457788999999999999999999999999973 344566777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNI 958 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~ 958 (1012)
...-+.++...+...+++. ..|+.+...++..+....++++|.++|.++.+ ..|+....|...-. +...|.-
T Consensus 795 ~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCH
Confidence 7777777777777666554 35889999999999999999999999999998 67888777655444 6788998
Q ss_pred HHHHHHHHHHHHC
Q 001797 959 DKATRFLESMIKF 971 (1012)
Q Consensus 959 ~~A~~~~~~~~~~ 971 (1012)
++-.+++++-..+
T Consensus 868 ed~kev~~~c~~~ 880 (913)
T KOG0495|consen 868 EDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHhcc
Confidence 8888998887663
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-19 Score=211.76 Aligned_cols=430 Identities=11% Similarity=0.047 Sum_probs=314.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLS 604 (1012)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 604 (1012)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456677889999999999999999985 5778899999999999999999999999999874 346778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|++++|+..|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. |......+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 999999999988776654322222 22222222211 23333334443332 223333333333 222211111211
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 685 LFDGIFAKGLTPTV-VTYTTIIDG---YCKSGNLTEAFQLVNEMPSRG-VTPD-NFVYCTLVDGCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~l~~~~~~~~-~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~ 758 (1012)
-+....+. .+.. ..+..+... ....+++++|.+.|++.+..+ ..|+ ...+..+...+...|++++|+..+++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 1111 111111111 123578999999999998764 2343 34678888888999999999999999
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
+++..|.....|..++.++...|++++|...|+++++.. +.+...|..++..+...|++++|+..|++.++. .+.+..
T Consensus 357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~~~~ 434 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIF 434 (615)
T ss_pred HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CccCHH
Confidence 999999988999999999999999999999999998852 346788999999999999999999999999874 233566
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH------HH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV------YT 911 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~ 911 (1012)
.+..++..+.+.|++++|+..|+++++ ..| ++..+..++.++...|++++|++.+++++... |.+... +.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHH
Confidence 788899999999999999999999987 445 57888899999999999999999999999875 211111 11
Q ss_pred H-HHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 001797 912 S-LANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGW 973 (1012)
Q Consensus 912 ~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~ 973 (1012)
. .+..+...|++++|++.++++++ +.|++...+..++. +...|++++|++.|++.++..-
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2 22233446999999999999988 67888776665555 8899999999999999988654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-17 Score=179.54 Aligned_cols=641 Identities=13% Similarity=0.116 Sum_probs=354.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 001797 286 DGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIE 365 (1012)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 365 (1012)
.-+...|++++|.+++.++++.. +.+...|.+|...|-.+|+.+++...+-.+.-.. +.|..-|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444577777777777777764 5566777777777777777777777666555443 445567777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHhcCCHHHHHHHH
Q 001797 366 KAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT----CNVIINGLCRCSDLEGACRVF 441 (1012)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~ 441 (1012)
+|.-.|.++++.. +++...+-.-...|-+.|+...|.+.|.++.+...+.|..- -...++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777763 23433444445566677777777777777777653222221 223345555666667777777
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----------------------HH----HH
Q 001797 442 EEMIACG-LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFC----------------------YN----SL 494 (1012)
Q Consensus 442 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------~~----~l 494 (1012)
+.....+ -..+...++.++..|.+...++.|......+......+|..- |. .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 7766532 122334666777777777777777776666554211111111 11 12
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 495 ISGLCKAKKMEDARSCLVEMTANG--LKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEG 572 (1012)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 572 (1012)
.-++......+....+..-..+.. +.-+...|..+..+|...|++.+|..+|..+.......+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223334444444444444444444 333455677788888888888888888888887665666778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCH
Q 001797 573 NVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDK--------GLVPDVITYSSLISGFCKQGFI 644 (1012)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~ 644 (1012)
.+++|.+.|+.++... +.+...-..|...+.+.|+.++|.+.+..+..- +..|+..........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 8888888888887763 335556667777888888888888888875422 2233333444445566777777
Q ss_pred HHHHHHHHHHHHCC-----CCC-----------------ChhhHHHHHHHHHhcCCHHHHHHH------HHHHHhCCCCC
Q 001797 645 KEAFQLHEKMCESG-----ITP-----------------NIVTYNALIDGLCKSGELERAREL------FDGIFAKGLTP 696 (1012)
Q Consensus 645 ~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~~~~p 696 (1012)
++-+.+...|+... +-| .......++.+-.+.++.....+- +......|...
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 76555555554321 001 111112222222332221111111 11111112222
Q ss_pred CH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 001797 697 TV--VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV-TPDNF----VYCTLVDGCCRDGNMEKALSLFLEMVQK-----GL 764 (1012)
Q Consensus 697 ~~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 764 (1012)
+. ..+.-++..+++.+++++|+.+...+..... .-+.. .-...+.+....+++..|.+.++.++.. .+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 21 1234556677788888888888777664321 11111 1233344556777888888888877776 44
Q ss_pred CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH-HH
Q 001797 765 ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT-SL 843 (1012)
Q Consensus 765 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l 843 (1012)
.....|+...+...+.++-.--..++..+.......++..+......+...+.+..|+..+-++.. ..|+....+ .+
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHH
Confidence 334555544444444444333333333333321111233333334444566777777776666554 234422222 22
Q ss_pred HHHHHc--c-----C---ChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--------
Q 001797 844 LHGYAG--I-----G---KRSEMFALFDEMVERG-VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-------- 904 (1012)
Q Consensus 844 ~~~~~~--~-----g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 904 (1012)
+-++.. . . ..-+++.++.+-.+.. .....++.++++.+|-..|-..-|..+|++++....+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 222221 1 1 1223333333333311 1113355666667776677777777777766665200
Q ss_pred ---cCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 905 ---LNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 905 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
-...+-..|.-+|...|+...|.+++.+
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 0123333445555556666555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-17 Score=176.90 Aligned_cols=634 Identities=14% Similarity=0.090 Sum_probs=431.1
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
|+.++|.+++.++++..+. +...|.+|...|-..|+.+++...+-.....+ +.|...|..+.....+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4444445555555555554 67789999999999999999998877766554 567789999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 337 NEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQT-----YNSLIEGCYRENNMAKAYELLVDMKK 411 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (1012)
.++++.. +++...+---...|-+.|+...|...|.++.+... |...- --.++..+...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999886 55655555667788899999999999999998742 22221 22345667778888999999998877
Q ss_pred CC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------------HHHHHHHHHHH
Q 001797 412 RN-LSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPN---------------------------NFVYTTLIQAH 463 (1012)
Q Consensus 412 ~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------------------~~~~~~li~~~ 463 (1012)
.+ -..+...++.++..+.+...++.|......+..+...+| ..+ ..+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 32 134556788999999999999999999888876322222 222 1122233
Q ss_pred HhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHH
Q 001797 464 LRQNRFEEAINILKGMTGKG--VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQA 541 (1012)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 541 (1012)
......+....+..-+.+.. +.-++..|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 33333333333444444444 3335667889999999999999999999999987655567789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 542 ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR--------GILPDLKTYSVLIHGLSRCGKIHEAL 613 (1012)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~ 613 (1012)
|.+.|+..+... |.+..+-.+|...+.+.|+.++|.+.++.+..- +..|+..........+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999875 567788888999999999999999999986532 23445555555667788889888765
Q ss_pred HHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHCCCCCCh--
Q 001797 614 EVFSELQDKG-----LVP-----------------DVITYSSLISGFCKQGFIKEAFQLH------EKMCESGITPNI-- 663 (1012)
Q Consensus 614 ~~~~~~~~~~-----~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~------~~~~~~~~~~~~-- 663 (1012)
.....|+... +.| .......++.+-.+.++.....+-. ..-...|...+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5555544311 111 1112222233333332211111111 111111222221
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-CC--CCC-HH
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFAKGL-TPTVV----TYTTIIDGYCKSGNLTEAFQLVNEMPSR-GV--TPD-NF 734 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~--~pd-~~ 734 (1012)
..+..++..+++.+++++|..+...+..... ..+.. .-...+.+.+..+++..|...++.|+.. ++ .|. ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2346678889999999999999998886521 11221 2234556677899999999999999864 11 122 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPN-HVTYTILIDYH 812 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 812 (1012)
.|+...+...+.++-..-...+..+....+.++ ......+..+...+.+..|+..+-++... .|+ +.+-.+++-++
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHH
Confidence 455555666666665555666666666666664 55555677778899999999988888763 455 33322333332
Q ss_pred H----------hcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC-------CC---
Q 001797 813 C----------KAGTMKDAEHLLVEMQKRV-LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVE-------PD--- 871 (1012)
Q Consensus 813 ~----------~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p~--- 871 (1012)
. ++-..-.+..++.+..+.. ......++-.++++|...|-..-|..+|+++++.... ++
T Consensus 785 ih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dL 864 (895)
T KOG2076|consen 785 IHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDL 864 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccH
Confidence 2 2223456667776666532 2224557788999999999999999999999963211 01
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 872 -GVIYSMMVDAYLKEGNMMKTIKLVDEM 898 (1012)
Q Consensus 872 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 898 (1012)
...-.+|.-.|..+|+...|.+++++-
T Consensus 865 rkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 865 RKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 134456677899999999999988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=203.32 Aligned_cols=302 Identities=15% Similarity=0.130 Sum_probs=212.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcC
Q 001797 671 DGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD---NFVYCTLVDGCCRDG 747 (1012)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd---~~~~~~l~~~~~~~g 747 (1012)
..+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666777777777776652 22445666666677777777777777776665422211 134566677777777
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH----VTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
++++|..+|+++.+..+....++..++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777777766666677777777777777777777777777764322211 234566777778888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 001797 824 LLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL 903 (1012)
Q Consensus 824 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 903 (1012)
.|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++....
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887642 234556777888888888888888888888763222123556777888888888888888888888775
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCccChh
Q 001797 904 VLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYE---AGNIDKATRFLESMIKFGWVADST 978 (1012)
Q Consensus 904 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 978 (1012)
|+...+..++..+.+.|++++|.++++++.+ ..|+...+..++..+.. .|+.+++..+++++++.++.|+..
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4555667888888888888888888888877 57888877777766553 558888888888888877666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=200.79 Aligned_cols=294 Identities=15% Similarity=0.168 Sum_probs=148.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCH
Q 001797 603 LSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGEL 679 (1012)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 679 (1012)
+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555432 1334455555555555555555555555554321111 13345555556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 001797 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN----FVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 680 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~----~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..++..+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666543 1234455555666666666666666666665543222111 1233444445555566666666
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
|+++++..|....++..++..|.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6665555555445555555555555555555555555554311111234445555555555555555555555542 33
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcC
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK---EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 902 (1012)
+...+..++..+.+.|++++|..+++++++ ..|+...+..++..+.. .|+.++|+.++++++.++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 434444555555555555555555555554 24444444444443332 335555555555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-18 Score=200.31 Aligned_cols=421 Identities=13% Similarity=0.036 Sum_probs=306.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 533 YTKTGNMQAADRYFQEMLNCG--IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
+.+..+++.-.-++....+.- -..+..-...++..+.+.|++++|..+++..+.... -+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHH
Confidence 446667766655555443221 012233445566678889999999999999888643 34556666677778899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
+|...++++....+. +...+..+...+...|++++|+..++++++.. +.+...+..++..+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999887543 66778888888999999999999999998863 3356778888889999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhH
Q 001797 691 AKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSF 770 (1012)
Q Consensus 691 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 770 (1012)
..... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++++++..|.+...+
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 65322 33334333 34778899999999999887753333444555566778889999999999999999998888888
Q ss_pred HHHHHHHHhcCcHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 001797 771 NALLNGLCKSQKIFE----ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHG 846 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 846 (1012)
..++..|...|++++ |...++++++.. +.+...+..++..+.+.|++++|+..++++.+. .+.+...+..++..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 999999999999886 788999988742 335668888999999999999999999998874 23355677788889
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
+.+.|++++|+..++++.+ ..|+. ..+..++.++...|+.++|+..|+++++.. |+.. ..++++
T Consensus 328 l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~e 392 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEE 392 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHH
Confidence 9999999999999999886 45544 334445678889999999999999998885 2221 456678
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChh
Q 001797 926 VLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADST 978 (1012)
Q Consensus 926 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 978 (1012)
|...+.++.+. +.......+|...-....-+.| ....++..++|+..|..
T Consensus 393 a~~~~~~~~~~-~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 442 (656)
T PRK15174 393 GLLALDGQISA-VNLPPERLDWAWEVAGRQSGIE--RDEWERRAKWGYLADNF 442 (656)
T ss_pred HHHHHHHHHHh-cCCccchhhHHHHHhcccccCC--hHHHHHHHHhhHHHHHH
Confidence 88888888764 2222233234433322221222 33466778888776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=202.30 Aligned_cols=369 Identities=11% Similarity=0.016 Sum_probs=289.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001797 595 TYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLC 674 (1012)
Q Consensus 595 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 674 (1012)
-...++..+.+.|++++|+.++...+...+. +...+..++.+....|++++|...++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445677888999999999999999887555 45556666677778999999999999999874 335777888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998862 3356778888999999999999999999887642 2223333333 34778899999999
Q ss_pred HHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 001797 755 LFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKD----AEHLLVEMQ 829 (1012)
Q Consensus 755 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 829 (1012)
.++.+++..+.+. ..+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++ |+..|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999988876443 555666788999999999999999998753 4466788889999999999986 799999988
Q ss_pred HCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 830 KRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 830 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
+. .+.+...+..++..+...|++++|...++++++ ..| +...+..++.++.+.|++++|+..++++.... |.+..
T Consensus 278 ~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 74 233566888999999999999999999999987 455 45677788899999999999999999999875 44445
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChh-HHHHhhhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADST-VMMDLVKQ 986 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~~~~~ 986 (1012)
.+..++.++...|++++|++.++++.+ ..|+.. ..++++|...+...+..--.|... .|..=+.+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL-----------PQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc-----------hhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 566678889999999999999999988 667654 345567777777777755444444 45444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-17 Score=199.83 Aligned_cols=407 Identities=11% Similarity=-0.002 Sum_probs=227.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHE 611 (1012)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 611 (1012)
...-.|+.++|++++....... +.+...+..+...+...|++++|...+++.+... +.+...+..++..+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3334444444444444444311 2333344444444444555555555554444431 2233344444444445555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 612 ALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 612 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|+..++++.+..+. +.. +..+...+...|+.++|+..++++++.. +.+...+..++..+...|..++|+..++.+..
T Consensus 102 A~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 55555554443211 233 4444444455555555555555555432 11333333444444444555555554443332
Q ss_pred CCCCCCH------HHHHHHHHHH-----HHcCCH---HHHHHHHHHhhhC-CCCCCHH-HH----HHHHHHHHhcCCHHH
Q 001797 692 KGLTPTV------VTYTTIIDGY-----CKSGNL---TEAFQLVNEMPSR-GVTPDNF-VY----CTLVDGCCRDGNMEK 751 (1012)
Q Consensus 692 ~~~~p~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~~~~~-~~~pd~~-~~----~~l~~~~~~~g~~~~ 751 (1012)
.|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1111 0011111111 112223 6677777776643 1122221 11 111233456677888
Q ss_pred HHHHHHHHHHcCCC-chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 752 ALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANKLLEDMADKHITP---NHVTYTILIDYHCKAGTMKDAEHLLVE 827 (1012)
Q Consensus 752 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 827 (1012)
|+..|+++++.++. +..+...++..|...|++++|+..|+++.+..... .......+..++...|++++|..++++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 88888887777654 33344446777888888888888888776532111 123455566667788888888888887
Q ss_pred HHHCC-----------CCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 001797 828 MQKRV-----------LKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 828 ~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
+.... ..|+ ...+..++..+...|++++|++.++++++ ..| +...+..++.++...|++++|+
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 77531 0122 12345566777788888888888888876 344 5667778888888888888888
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+.+++++... |.+...+..++..+...|++++|++.++++++ ..|+++....+-+.
T Consensus 414 ~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 414 NELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8888888876 66677888888888888888888888888887 67887766555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-18 Score=201.25 Aligned_cols=412 Identities=9% Similarity=0.023 Sum_probs=315.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001797 555 APNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSL 634 (1012)
Q Consensus 555 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 634 (1012)
+.+..-..-.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4455555556667788999999999999998632 456667999999999999999999999999886433 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001797 635 ISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNL 714 (1012)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 714 (1012)
+..+...|++++|+..++++++.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 889999999999999999999873 44566 8889999999999999999999999873 33556667788888899999
Q ss_pred HHHHHHHHHhhhCCCCCCHH------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHHcCCCch---hhH----HHH
Q 001797 715 TEAFQLVNEMPSRGVTPDNF------VYCTLVDGCC-----RDGNM---EKALSLFLEMVQKGLAST---SSF----NAL 773 (1012)
Q Consensus 715 ~~A~~l~~~~~~~~~~pd~~------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~---~~~----~~l 773 (1012)
++|+..++.+.. .|+.. ....++.... ..+++ ++|++.++.+++..+..+ ..+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999987764 33320 1112222221 12234 788999999987633322 111 111
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHc
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHIT-PNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP---NFRTYTSLLHGYAG 849 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~ 849 (1012)
+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999886532 332 22235778999999999999999987632111 12456667778899
Q ss_pred cCChhHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 001797 850 IGKRSEMFALFDEMVERG-----------VEPD---GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
.|++++|..+++++.+.. ..|+ ...+..++..+...|++++|++.++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 999999999999998632 1123 2345667789999999999999999999886 778999999999
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCccChhHH
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGWVADSTVM 980 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 980 (1012)
++...|++++|++.++++++ +.|++......... +...|++++|..+++++++.. |+...+
T Consensus 402 l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 99999999999999999998 78998776665555 778999999999999999843 555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-16 Score=185.68 Aligned_cols=438 Identities=11% Similarity=0.041 Sum_probs=232.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
...+.|+++.|+..|.+..+..+.-....+ .++..+...|+.++|...+++.... .+........++..|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 456788888888888888775332111233 6777777778888888888887721 12333444444567777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCE 656 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 656 (1012)
|+++|+++++.. +.++..+..++..+...++.++|++.+.++... .|+...+..++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888888887764 334666667777778888888888888887765 34444444444344445566568888888877
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcC------------CHHHHHHHHH
Q 001797 657 SGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYT--TIIDGYCKSG------------NLTEAFQLVN 722 (1012)
Q Consensus 657 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g------------~~~~A~~l~~ 722 (1012)
.. +.+...+..+...+.+.|-...|.++..+-..- +.+...-+- ..+.-..+.+ -.+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 63 335666677777777778777777665543321 111111110 0000111111 1233344444
Q ss_pred HhhhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 723 EMPSR-GVTPD-NF----VYCTLVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 723 ~~~~~-~~~pd-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.+... +-.|. .. +..-.+-++...|++.++++.|+.+...+. -|+.+...++++|...++.++|..+++++..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 43321 11121 11 111223334455555555555555555442 2445555555555555555555555555543
Q ss_pred CCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCh--H-HHHHHHHHHHccCChhHH
Q 001797 796 KHI-----TPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL-----------KPNF--R-TYTSLLHGYAGIGKRSEM 856 (1012)
Q Consensus 796 ~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A 856 (1012)
... +++......|..++...+++++|..+++++.+... .|++ . .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 211 11222234455555555555555555555554200 0111 1 122334444555555555
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 857 FALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.+.+++++. ..| |......++..+...|.+.+|.+.++.+.... |.+..+...++.++...|++.+|.++.+.+.+
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555543 233 44555555555555555555555555544443 44455555555555555555555555555554
Q ss_pred CCCCCCHHHHH
Q 001797 936 KEIKLSHATCC 946 (1012)
Q Consensus 936 ~g~~p~~~~~~ 946 (1012)
..|+++...
T Consensus 513 --~~Pe~~~~~ 521 (822)
T PRK14574 513 --RSPEDIPSQ 521 (822)
T ss_pred --hCCCchhHH
Confidence 445554333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-15 Score=177.79 Aligned_cols=447 Identities=13% Similarity=0.081 Sum_probs=265.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH
Q 001797 427 GLCRCSDLEGACRVFEEMIACGLKPNN--FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKM 504 (1012)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 504 (1012)
...+.|+++.|+..|++.++.. |+. .++ .++..+...|+.++|+..+++..... .........++..+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3345666666666666665542 332 122 55555555566666666666555211 11122222223445555666
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 505 EDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584 (1012)
Q Consensus 505 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 584 (1012)
++|.++|+++.+..+. +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 6666666665554332 2334444455555555555665555555543 233333333333333334444455555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001797 585 LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV 664 (1012)
Q Consensus 585 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 664 (1012)
.+.. +.+...+..++..+.+.|-...|.++..+-. +.++-...... +.+.|.+..+. +..+...
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~~ 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRM----AVLPTRS 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhh----ccccccc
Confidence 5542 2244445555555555555555554443321 11110000000 00111111111 1000000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 001797 665 TYNALIDGLCKSGELERARELFDGIFAK-GLTPTV-VTY----TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCT 738 (1012)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~ 738 (1012)
- -. +---.+.|..-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..
T Consensus 260 ~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 E----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred c----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 00 001245566666666653 112321 222 2344567789999999999999998876534457788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC----ch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----------CCC
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLA----ST--SSFNALLNGLCKSQKIFEANKLLEDMADKHI-----------TPN 801 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~ 801 (1012)
+.++|...+.+++|..+|+.+....++ +. .....|.-+|...+++++|..+++++.+... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 999999999999999999999876532 22 3357788999999999999999999987311 122
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 001797 802 H---VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSM 877 (1012)
Q Consensus 802 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 877 (1012)
+ ..+..++..+...|++.+|++.++++... -+-|......+...+...|++.+|...++.+.. +.| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHH
Confidence 2 13445677788999999999999999875 345888999999999999999999999977764 577 4567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQ 907 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 907 (1012)
.+..+...|++.+|..+.+.+.+.. |.+.
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~-Pe~~ 518 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRS-PEDI 518 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhC-CCch
Confidence 8899999999999999999999985 5444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-15 Score=153.96 Aligned_cols=479 Identities=14% Similarity=0.101 Sum_probs=299.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001797 386 YNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTC-NVIINGLCRCSDLEGACRVFEEMIACGLKPN----NFVYTTLI 460 (1012)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 460 (1012)
...|..-|..+..+.+|+..++-+++....||.... ..+.+.+.+.+.+.+|+++++..+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677778889999999999988877776443 3567788899999999999998887532222 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhH--------HHHHHH
Q 001797 461 QAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTY--------GAFIRE 532 (1012)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~ 532 (1012)
-.+++.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.-...||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6688999999999999988775 467776666666777789999999999999876544443322 122222
Q ss_pred HHhcCCH--------HHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 533 YTKTGNM--------QAADRYFQEMLN---CGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIH 601 (1012)
Q Consensus 533 ~~~~g~~--------~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 601 (1012)
..+...+ ..|.+..-...+ --+.|+-. .| .+-.++.++.-.......+. -..-..
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei~ka~ 427 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EINKAG 427 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hhhHHH
Confidence 2221111 111111111111 00111100 00 01111111111100000000 011233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 001797 602 GLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF-CKQ-GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGEL 679 (1012)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 679 (1012)
.|.+.|+++.|+++++-+.+++-..-...-+.|-..+ .+. .++.+|.+.-+..+... .-+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 5678888888888888777654332222223332222 222 36777777766665432 22333333333444557888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEM 759 (1012)
Q Consensus 680 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 759 (1012)
++|.+.|++.+.....-....|+ +.-.+-..|++++|++.|-++..- +..+..++..+.+.|....+..+|++++.++
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888888652221122222 222456788888888888776543 2335567777788888888888888888888
Q ss_pred HHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 001797 760 VQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRT 839 (1012)
Q Consensus 760 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 839 (1012)
...-|.++.++..|+..|-+.|+-..|.+.+-.-... ++-+..+...|...|....-+++|+.+|++..- +.|+...
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 8888888888888888888888888888776655443 455677777777788888888888888887653 6788888
Q ss_pred HHHHHHHH-HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001797 840 YTSLLHGY-AGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 840 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 887 (1012)
|..++..| .+.|+++.|.++|+..... ++.|......|+..+...|-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88666444 5678888888888887763 45577777777776666553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-14 Score=145.02 Aligned_cols=448 Identities=15% Similarity=0.125 Sum_probs=284.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 001797 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYG-AFIREYTKTGNMQAADRYFQEMLNCGIAPN----DIIYTTLIDG 567 (1012)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~ 567 (1012)
.|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+..++..|+++++..+++-...+ ..+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34455555556666666666666655555543322 344555666666667666666665422222 1233334445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 001797 568 HCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLV------------PDVITYSSLI 635 (1012)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~li 635 (1012)
+.+.|++++|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+....+..+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 56666777777777666554 456555555555555566666666666666543222 2222222222
Q ss_pred HH-----HHhcC--CHHHHHHHHHHHHHCCCCCChhh---------------------HHHHHHHHHhcCCHHHHHHHHH
Q 001797 636 SG-----FCKQG--FIKEAFQLHEKMCESGITPNIVT---------------------YNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 636 ~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
.. ..+.+ +-++++-.--+++.--+.|+-.. -..-..-|.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11 11111 12222222222222112222100 0112335778999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHH-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 688 GIFAKGLTPTVVTYTTIIDG-YCK-SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 688 ~~~~~~~~p~~~~~~~li~~-~~~-~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
-..++..+.....-+.|-.. |.+ ..++..|.++.+..+... .-+......-.+.-...|++++|.+.|++++..+..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 87766332222222222222 222 346777877777766431 223333333344455789999999999999998877
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLH 845 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 845 (1012)
...++..++-.+...|++++|+++|-++..- +..+......+...|.-..+...|++++.+.... ++.|+.++..|..
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 7788888899999999999999999887653 3346667778888898899999999999877654 5558889999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH-HHHhccccH
Q 001797 846 GYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLA-NSLCKEEEF 923 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~ 923 (1012)
.|-+.|+-.+|...+-+--. .-| +.++...|+.-|....-+++|+.+++++.-. .|+..-|..++ .++.+.|++
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccH
Confidence 99999999999987766543 444 7788888888899999999999999998765 47888887765 566788999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 924 YKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
++|.++|+....+ .|.+-.|.-.+-.
T Consensus 677 qka~d~yk~~hrk--fpedldclkflvr 702 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK--FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 9999999999873 5655555444333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-13 Score=150.20 Aligned_cols=572 Identities=14% Similarity=0.074 Sum_probs=280.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
.|+..+|..++..-...|+.+.|..++.+|.++|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 478888888888888888888888888888888888777766666544 77888888888888888888888888776
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHCCCCCchhhHHHHHHHHH
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMED-----ARSCLVEMTANGLKPNLYTYGAFIREYT 534 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 534 (1012)
+..+..+|....+.+....-. ......+..+..+.....+++. ....+.+..-.|+......|. +..-..
T Consensus 278 vip~l~N~~t~~~~e~sq~~h----g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~ 352 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAH----GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLR 352 (1088)
T ss_pred HHhhhcchhhhhcccccchhh----hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHH
Confidence 666666554222222111000 0012222333322111111111 111112211123322222222 222233
Q ss_pred hcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 535 KTGNMQAADRYFQEMLNCG---IAPNDIIYTTLIDGHCKEGNVKEAFSTFR--CMLGRGILPDLKTYSVLIHGLSRCGKI 609 (1012)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~ 609 (1012)
.+|.-++..++-..+..-- -+.++..|..++.-|.+.-+.--...++. +.+.. ..+...--.++....+. +.
T Consensus 353 hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rk 429 (1088)
T KOG4318|consen 353 HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RK 429 (1088)
T ss_pred HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-Cc
Confidence 3566666666666664311 12234445555544443321111111111 11110 00000000111111111 11
Q ss_pred HHHHHHHHHHHh----CCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001797 610 HEALEVFSELQD----KGLVP-------DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678 (1012)
Q Consensus 610 ~~A~~~~~~~~~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 678 (1012)
..++.-+..+.. ....| -...-+.++..++..-+..++...-++....- -+ ..|..|++.++....
T Consensus 430 ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 430 NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDK 506 (1088)
T ss_pred chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHH
Confidence 111111111110 00111 11123445555665555555554433332221 11 457888888888888
Q ss_pred HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 001797 679 LERARELFDGIFAK--GLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 679 ~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
.+.|..+.+++... .+..|..-+..+.+.+.+.+....+..++.++.+.-...+ ..++..+++.....|+.+.-.+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 99998888888654 2233455677888888888999999999988876422222 2355566677777888888777
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---------------------HH
Q 001797 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY---------------------HC 813 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---------------------~~ 813 (1012)
+++-+...+...+ .-+.....+.++...|.+.++..... ..|.+.....+... |.
T Consensus 587 l~d~lvslgl~et---gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~ 662 (1088)
T KOG4318|consen 587 LADILVSLGLSET---GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFE 662 (1088)
T ss_pred HHHHHHHhhhhhc---ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHH
Confidence 7776665544331 22333445566666666666554432 33333322222222 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIK 893 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 893 (1012)
+.|++.+|.++.+.= |+. +-+.- ..|...|...-.....+.+.+ ......|+..|.+.|+++.|..
T Consensus 663 k~g~~~~a~di~etp---G~r----~r~~R-Dr~~de~e~~~lEll~elt~~------lg~~dRLL~sy~~~g~~erA~g 728 (1088)
T KOG4318|consen 663 KLGSCVDAGDITETP---GVR----CRNGR-DRDTDEGEIVPLELLLELTHE------LGKNDRLLQSYLEEGRIERASG 728 (1088)
T ss_pred hcccccchhhccccC---ccc----ccCCC-ccccccCccccHHHHHHHHhH------hHHHHHHHHHHHhhhHHHHHHh
Confidence 333333332222100 000 00000 111111222211122222211 1223346677778888888888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhcccc---HHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 001797 894 LVDEMFLRGLVLNQNVYTSLANSLCKEEE---FYKVLKLLDEMGDK-EIKLSHATCCILISSVYEAGNI-DKATRFLESM 968 (1012)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 968 (1012)
+|.++. +.|+......|+.++.++.. ..++....+++-+. ...|....++.-...+..+++. +.|.+.|++.
T Consensus 729 lwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ 805 (1088)
T KOG4318|consen 729 LWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERL 805 (1088)
T ss_pred HHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 887776 34566777777777665543 33444444444331 1222222222222234444444 4677777777
Q ss_pred HHCCCccChhHHHHhhhh
Q 001797 969 IKFGWVADSTVMMDLVKQ 986 (1012)
Q Consensus 969 ~~~g~~~~~~~~~~~~~~ 986 (1012)
.+.-.+-+-..+..|++.
T Consensus 806 eeq~~v~tad~ls~f~k~ 823 (1088)
T KOG4318|consen 806 EEQLTVSTADELSDFLKC 823 (1088)
T ss_pred HHccCCCcHHHHHHHHHH
Confidence 776444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-12 Score=132.02 Aligned_cols=462 Identities=13% Similarity=0.115 Sum_probs=273.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 358 ICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGA 437 (1012)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (1012)
--..+++..|+.+|++.+..+ ..+...|-..+..-.++..+..|..++++.+..-+..| ..|.-.+.+--..|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHH
Confidence 334566666666666666543 34555666666666666666666666666665421111 2233333344445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 001797 438 CRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTAN 517 (1012)
Q Consensus 438 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 517 (1012)
.++|++-.+. .|+...|.+.|+.-.+-+.++.|..++++.+-. .|++.+|-.....-.+.|....|..+|+..++.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6666666553 566666666666666666666666666665543 356666665555555666666666666555442
Q ss_pred CC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 001797 518 GL--KPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN--DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDL 593 (1012)
Q Consensus 518 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 593 (1012)
-- ..+...+.+....-..+..++.|.-+|+-.++.= |.+ ...|..+...--+-|+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~------------------ 297 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKE------------------ 297 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchh------------------
Confidence 00 0011122222222233344444444444444431 111 112222211111112111
Q ss_pred HHHHHHHHHHHhcCCHHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhH
Q 001797 594 KTYSVLIHGLSRCGKIHEAL-----EVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI--VTY 666 (1012)
Q Consensus 594 ~~~~~li~~~~~~g~~~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 666 (1012)
-+++++ --++.++..++ .|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|
T Consensus 298 --------------gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W 361 (677)
T KOG1915|consen 298 --------------GIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYW 361 (677)
T ss_pred --------------hhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHH
Confidence 122221 12334444432 36667777777777778888888888888765 34421 111
Q ss_pred HHHH-----HHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q 001797 667 NALI-----DGL---CKSGELERARELFDGIFAKGLTPTVVTYTTI----IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF 734 (1012)
Q Consensus 667 ~~l~-----~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~ 734 (1012)
.-.| .++ ....+++.+.++|+..++. ++....|+.-+ .....++.++..|.+++...+. ..|-..
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~K 438 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchh
Confidence 1111 111 2457788888888888874 34444554433 3344577888888888888774 577888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHIT-PNHVTYTILIDYHC 813 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 813 (1012)
++...|..-.+.++++....+|++.++-+|.+-.+|...+..-...|+++.|..+|+-.++.... -....|...|+.-.
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 88888888888889999999999999988888888888888888889999999999888765321 13446777777778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-----ccC-----------ChhHHHHHHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYA-----GIG-----------KRSEMFALFDEMVE 865 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 865 (1012)
..|.++.|..+++++++. .+...+|.+.+..-. ..| +...|..+|+++..
T Consensus 519 ~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 889999999999998874 344446666554322 223 45566777776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-14 Score=146.74 Aligned_cols=508 Identities=14% Similarity=0.064 Sum_probs=331.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 417 TAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLIS 496 (1012)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 496 (1012)
+..-+..+++-+..+.++.-|.-+-++....+. |+..-.-+.++++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 344455666666666677777777777665543 3333444666777777777777766543221 136666666777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
++.+..+++.|..++..-. +..+...|..--. ...-..+.+. ++. ++......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 7777777777776665220 0001111100000 0000000000 000 001111111112234555667788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRC-GKIHEALEVFSELQDK-GLVPDVITYSSLISGF-CKQGFIKEAFQLHEK 653 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 653 (1012)
|...|.+.+.. |+..+..+...-... -..++-..+|..+.-. ....++.....+.... ++..+ ++....-++
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~ 234 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNED 234 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCch
Confidence 88888877665 444444433221111 0111222222211000 0011222222222221 11111 111111110
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q 001797 654 MCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN 733 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~ 733 (1012)
..-.+...+........+-+...+++.+..++++.+.+. .++....+..-|..+...|+-.+-..+-.++++. .+...
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKA 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCC
Confidence 111123445666677778888999999999999999987 3445556666677888999998888888888875 45566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHC 813 (1012)
Q Consensus 734 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 813 (1012)
.+|.+++--|...|+..+|++.|.+....++.-..+|..++..|.-.|.-+.|...+....+. ++....-+.-+.--|.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 789999998889999999999999999999998899999999999999999999999888663 2323333444555688
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHHhcC
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVE--RGVEP----DGVIYSMMVDAYLKEG 886 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p----~~~~~~~l~~~~~~~g 886 (1012)
+.++.+-|.++|.++.. +.| |+..++-++-.....+.+.+|..+|+..++ ....+ ...++++|+.+|.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 89999999999999885 445 788888888888889999999999999884 11111 3467889999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 887 NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 887 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
++++|+..+++.+... |.+..++..++-+|...|+++.|++.|.+++. +.|++.....+++..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999996 77999999999999999999999999999997 899998888888764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-13 Score=135.75 Aligned_cols=357 Identities=19% Similarity=0.230 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 001797 277 DCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIG 356 (1012)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (1012)
...||.+||.|+|+--..+.|.+++++........+..+||.+|.+-. +-...++..+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456888899999999889999999988887777888888888887743 2233778888888888899999999999
Q ss_pred HHHhcCCHHHH----HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHH----hCCCCC----ChhhHHH
Q 001797 357 GICKAGEIEKA----KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAK-AYELLVDMK----KRNLSP----TAYTCNV 423 (1012)
Q Consensus 357 ~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~~~~~~----~~~~~~~ 423 (1012)
+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |...+.++. .+.+.| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 88898887755 4666778888899998899888888888877643 333333332 222222 3445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 424 IINGLCRCSDLEGACRVFEEMIACG----LKPN---NFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLIS 496 (1012)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 496 (1012)
.+..|.+..+.+-|.++..-..... +.|+ .+-|..+....|+....+.-...++.|+-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 6777777778777777765543321 1222 23455566667777777777777777766655566666666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI---IYTTLIDGHCKEGN 573 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 573 (1012)
+..-.|.++-..+++.+++..|...+.... ++++..+.+....|+.. -+..+..-+. . +
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-a-d 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCA-A-D 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHH-H-H
Confidence 666666666666666666665433222211 12222222222222211 1111111000 0 1
Q ss_pred hHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH---HHHHHHHhcCCHHHHH
Q 001797 574 VKEA-FSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG-LVPDVITYS---SLISGFCKQGFIKEAF 648 (1012)
Q Consensus 574 ~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~li~~~~~~g~~~~A~ 648 (1012)
+.++ ...-.++..... .....+.++-.+.+.|..++|.++|.-+.+++ -.|-....+ -+++.....++...|.
T Consensus 504 ~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 111122333322 33445556666667777777777777664432 122222233 3334445556666666
Q ss_pred HHHHHHHHC
Q 001797 649 QLHEKMCES 657 (1012)
Q Consensus 649 ~~~~~~~~~ 657 (1012)
..++-|...
T Consensus 582 ~~lQ~a~~~ 590 (625)
T KOG4422|consen 582 EVLQLASAF 590 (625)
T ss_pred HHHHHHHHc
Confidence 666666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-12 Score=139.41 Aligned_cols=527 Identities=16% Similarity=0.096 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINA 235 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 235 (1012)
++|..||..|+..|+.+.|- +|..| +-.........++.+..+-...++.+.+. .|-+.||+.+..+
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 67899999999999998888 77777 65566666666776666655566554332 5788999999999
Q ss_pred HHhcCChHHHHHHHHHHHHh----------hcChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 236 HFRAGNVKAAQRVLFEMEEK----------VGAIDEAFELKESMI-HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKM 304 (1012)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~----------~g~~~~A~~~~~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 304 (1012)
|.+.|++.. |+..+.. .|.-..-..+.-.+. ..+..||..+ .+....-.|-++.+.+++..+
T Consensus 93 yr~hGDli~----fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 93 YRIHGDLIL----FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHhccchHH----HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 999999765 3333321 222222222222111 1123344433 222233356666666666555
Q ss_pred HhCC-CCCCHhHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001797 305 YDLK-LNPNEVVYTTLINGFMK-QGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD 382 (1012)
Q Consensus 305 ~~~~-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 382 (1012)
.... ..|-.+ .++-... .-.+++-..+.....+ .|+..+|..++++-.-.|+++-|..++.+|.+.|++-+
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4321 111111 1222211 1223333333333332 47788888888888888888888888888888887777
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001797 383 TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQA 462 (1012)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 462 (1012)
..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+.--+..+..+|....+.+.... ........+..+.++
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~----~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL----AHGFTAAVRSAACRG 311 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----hhhhhHHHHHHHhcc
Confidence 6655566554 677777777788888888888888877766666665542222111100 000011122222222
Q ss_pred HHhcCCHH-----HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC-chhhHHHHHHHHH
Q 001797 463 HLRQNRFE-----EAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANG--LKP-NLYTYGAFIREYT 534 (1012)
Q Consensus 463 ~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~~~~~~l~~~~~ 534 (1012)
.....+++ .....+.+..-.|.......|...+. ...+|+-++..++-..+..-- ..+ ++..|..++..|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111111 11111222111222222223322222 223555555555554443211 111 2223433333333
Q ss_pred hcC----------------------CHHHHHHHHHHHHH----------------CCCC-------CCHHHHHHHHHHHH
Q 001797 535 KTG----------------------NMQAADRYFQEMLN----------------CGIA-------PNDIIYTTLIDGHC 569 (1012)
Q Consensus 535 ~~g----------------------~~~~A~~~~~~~~~----------------~~~~-------~~~~~~~~li~~~~ 569 (1012)
+.- +..+..++...... .... +-...-+.++..++
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 221 11111111111000 0000 00112334444445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 001797 570 KEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG--LVPDVITYSSLISGFCKQGFIKEA 647 (1012)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 647 (1012)
..-+..+++..-+.....- . ...|..||+-++...+.+.|....+++.... ...|..-+..+.+.+.+.+...++
T Consensus 471 se~n~lK~l~~~ekye~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 4444444443333332211 1 1446667777777777777777776665321 223444566666667777777777
Q ss_pred HHHHHHHHHCCC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 001797 648 FQLHEKMCESGI-TPN-IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEM 724 (1012)
Q Consensus 648 ~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 724 (1012)
..++.++.+.-. .|+ ..+.--+.+.....|+.+.-.++++-+...|+..+ ..++....+.++...|.+..+..
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 777777665311 111 22333444555556777766666666665544321 22333344455555555554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-13 Score=134.79 Aligned_cols=421 Identities=12% Similarity=0.084 Sum_probs=251.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 535 KTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALE 614 (1012)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 614 (1012)
..+++..|..+|+.++... ..+...|...+.+-.++.++..|..++++.+.. .|.-...|.-.+.+--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3445555555555555433 344445555555555555555555555555543 11112233334444444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 001797 615 VFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAK-G 693 (1012)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 693 (1012)
+|.+-.+ ..|+...|.+.|..-.+....+.|..++++.+-. .|++..|...+..-.+.|.+..|..+|...++. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 5555444 2455555555555555555555555555555432 355555555555555555555555555555543 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHc
Q 001797 694 L-TPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKA--------LSLFLEMVQK 762 (1012)
Q Consensus 694 ~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A--------~~~~~~~~~~ 762 (1012)
- ..+...+.+...--.+++.++.|.-+|+-.+.. ++.+ ...|..+..---+-|+.... .--|+..+..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 001122233333333455556666666555543 2222 12233332222233332222 1235667777
Q ss_pred CCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-----H---HHhcCCHHHHHHHHHHHHHCC
Q 001797 763 GLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV--TYTILID-----Y---HCKAGTMKDAEHLLVEMQKRV 832 (1012)
Q Consensus 763 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-----~---~~~~g~~~~A~~~~~~~~~~~ 832 (1012)
+|.+..+|...+..-...|+.+...++|++.+.. ++|-.. .|...|. + -....+.+.+.++|+..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 7777778877777777788888888888888764 555221 2222111 1 13567888888888888873
Q ss_pred CCCChHHHHHHH----HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 833 LKPNFRTYTSLL----HGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 833 ~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
++-...|+..+- ..-.++-++..|.+++..++ |.-|-..++...+..-.+.++++...++|++.+.-+ |.+..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 333444555332 23345678888888888887 788888888888888888888999999999888887 77888
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVY----EAGNIDKATRFLESMIK 970 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~ 970 (1012)
+|...+..-...|+.+.|..+|.-+++ +|.-.....+...|. ..|.+++|..+++++++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~---qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAIS---QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc---CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 888888888888999999998888875 566666666666653 67888899999988887
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-12 Score=132.02 Aligned_cols=361 Identities=17% Similarity=0.226 Sum_probs=199.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 001797 345 KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVI 424 (1012)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 424 (1012)
+....+|..||.|+||--..+.|.+++.+......+.+..++|.+|.+-.-. ...++..+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4456778888888888888888888888877666677778888877653321 226677788877778888888888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHH----hhhCCCCC----CHHHH
Q 001797 425 INGLCRCSDLEG----ACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEE-AINILKG----MTGKGVLP----DVFCY 491 (1012)
Q Consensus 425 i~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~----~~~~~~~~----~~~~~ 491 (1012)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.+ +..+...| |..-+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 888888887655 45677777888888888888888887777776643 3333332 22222222 23334
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 492 NSLISGLCKAKKMEDARSCLVEMTANG----LKPN---LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTL 564 (1012)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 564 (1012)
..-+..+....+.+-|.++..-+.... +.|+ ...|..+....|+....+.....|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 444455556666666666554433211 1122 223445666666666666666666666655555666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC
Q 001797 565 IDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ-GF 643 (1012)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 643 (1012)
+.+....+.++-.-+++..++..|..-+.... .+++..+....+.|+...-..+-....+. -+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 66666666666666666655554322111111 12222333322233222111111111110 01
Q ss_pred HHHH-HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 001797 644 IKEA-FQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGL----TPTVVTYTTIIDGYCKSGNLTEAF 718 (1012)
Q Consensus 644 ~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~ 718 (1012)
+.++ ...-.+|.+. .......+..+-.+.+.|+.++|.++|.-+.+++. .|.......+++.-.+.+.+..|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 1111223332 22333455555566777777777777777654422 122233334444455566666666
Q ss_pred HHHHHhhhC
Q 001797 719 QLVNEMPSR 727 (1012)
Q Consensus 719 ~l~~~~~~~ 727 (1012)
..++-|...
T Consensus 582 ~~lQ~a~~~ 590 (625)
T KOG4422|consen 582 EVLQLASAF 590 (625)
T ss_pred HHHHHHHHc
Confidence 666666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-11 Score=134.49 Aligned_cols=436 Identities=14% Similarity=0.080 Sum_probs=220.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 001797 487 DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI-IYTTLI 565 (1012)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li 565 (1012)
|...|..|.-++...|+++.+.+.|++.....+ -....|..+...+...|.-..|..+++........|+.. .+...-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 444455555555555555555555555443211 133445555555555555555555555544332122222 222222
Q ss_pred HHH-HhcCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 001797 566 DGH-CKEGNVKEAFSTFRCMLGR--GI--LPDLKTYSVLIHGLSRC-----------GKIHEALEVFSELQDKGLVPDVI 629 (1012)
Q Consensus 566 ~~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 629 (1012)
..| -+.+.+++++..-.++++. +. ......|..+.-+|... ....++++.+++..+.+.. |+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cch
Confidence 222 2234455555444444431 10 11223333333333321 1234566666666655432 332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 630 TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYC 709 (1012)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 709 (1012)
..-.+.--|...++.+.|.+...+.++.+...+...|..|.-.+...+++.+|+.+.+..... ...|......-+..-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhh
Confidence 223333345666777777777777777655666777777777777777777777777776654 1112221122222333
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCch-hhHHHHHHHHHhcCcHHHH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQ--KGLAST-SSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A 786 (1012)
.-++.++|+.....+... +. +..... ..++-.........+.- ..+.+. ..+..+.......+.....
T Consensus 559 ~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 456666666666655431 00 000000 00111111111111100 011111 2222222211111100000
Q ss_pred HHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 787 NKLLEDMADKHITP--N------HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
... +......| + ...|......+.+.++.++|...+.++... .+-....|...+..+...|+.+||.+
T Consensus 630 e~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 630 ELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 000 11111111 1 124455566667777777777766666643 23355566666677777788888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIK--LVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.|..++. ++| ++.....++.++.+.|+..-|.+ ++..++..+ |.+...|..++.++.+.|+.++|.+.|..+.+
T Consensus 706 af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8877774 666 45667777788888887777766 777777776 66778888888888888888888888777766
Q ss_pred CCCCCCHH
Q 001797 936 KEIKLSHA 943 (1012)
Q Consensus 936 ~g~~p~~~ 943 (1012)
+++++|
T Consensus 783 --Le~S~P 788 (799)
T KOG4162|consen 783 --LEESNP 788 (799)
T ss_pred --hccCCC
Confidence 555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=140.91 Aligned_cols=411 Identities=12% Similarity=0.069 Sum_probs=252.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 001797 492 NSLISGLCKAKKMEDARSCLVEMTANGLKPN-LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN-DIIYTTLIDGHC 569 (1012)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~ 569 (1012)
-...+-|.++|++++|+++|...++. .|| ++.|.....+|...|++++..+.-...++. .|+ +.++..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455677788888888888887774 455 667777777888888888888777777764 343 445666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHh---CCCCCCHHHHHHHHHHH
Q 001797 570 KEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFS--------ELQD---KGLVPDVITYSSLISGF 638 (1012)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~---~~~~~~~~~~~~li~~~ 638 (1012)
..|++++|+.-..- .++..++....-..-+.++++ +-.. ....|+.....+....+
T Consensus 195 ~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 77777777542222 222222222222222222222 1111 11234443333333322
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhC-CCC-----CCH------HHHHHHH
Q 001797 639 CKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK-SGELERARELFDGIFAK-GLT-----PTV------VTYTTII 705 (1012)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~-----p~~------~~~~~li 705 (1012)
-.. +. ..+...+...|...-..+-..+.. ...+.+|...+.+-... ... .|. .+...-.
T Consensus 262 ~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 110 00 000000000011100111000110 01233333333222110 000 011 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
..+.-.|+.-.|...|+..+.....+ ...|..+...|....+.++....|.++...+|.++.+|..-++++.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 12334678888888888888753222 22377777788888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 786 ANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
|..-|++.+. +.| +...|..+.-+..+.++++++...|++..++ ++..+..|+.....+..+++++.|.+.|+.++
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999887 445 4456777777777888999999999988875 66677788888888989999999999999888
Q ss_pred HcCCCCC-------HHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 865 ERGVEPD-------GVIY--SMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 865 ~~~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+ +.|+ +..+ ..++-. .-.+++..|+.+++++.+.+ |....+|.+|+......|+.++|+++|++...
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h--hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6 4443 1222 222222 23488999999999999886 66778899999999999999999999988764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-09 Score=119.51 Aligned_cols=692 Identities=12% Similarity=0.160 Sum_probs=386.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001797 157 VFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAH 236 (1012)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (1012)
+-...+.+|+..|.+++++-.. ++.|..|+.. .++..+.+ -.++.+.++...|..... ...-.+.+...+
T Consensus 483 vp~KVi~cfAE~Gqf~KiilY~----kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlF 552 (1666)
T KOG0985|consen 483 VPAKVIQCFAETGQFKKIILYA----KKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLF 552 (1666)
T ss_pred CcHHHHHHHHHhcchhHHHHHH----HHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHH
Confidence 3455777888888888887665 4558889854 45666666 567888888777776332 233455666666
Q ss_pred HhcCChHHHHHHHHHHHHh----hc---------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001797 237 FRAGNVKAAQRVLFEMEEK----VG---------AIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKK 303 (1012)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~----~g---------~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (1012)
........+..++-.+... .| +.-.|-.+.+.++..+.-. -.-+..+.+.|-+.|-+..|++.+.+
T Consensus 553 me~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFt-HyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFT-HYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccc-cccHHHHHHHHHhcchHHHHHHhccc
Confidence 6666666666665554432 00 1112233333344333321 22267788888899999999988877
Q ss_pred HHhCCCCCCHhHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 001797 304 MYDLKLNPNEVVYTT-----LINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRL- 377 (1012)
Q Consensus 304 ~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 377 (1012)
..+.. .. ++-+. -...|.-.-.++.+.+.++.|...++.-|..+.-.+..-|+..=-.+.-.++|+.....
T Consensus 632 l~DIK--R~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 632 LYDIK--RV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred HHHHH--HH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 65421 11 11111 12344555688999999999999888878777766666676655555566666654332
Q ss_pred ----------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------HhCCC---CC-----ChhhHH-----
Q 001797 378 ----------GINPDTQTYNSLIEGCYRENNMAKAYELLVDM------------KKRNL---SP-----TAYTCN----- 422 (1012)
Q Consensus 378 ----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~~---~~-----~~~~~~----- 422 (1012)
++..|....-..|.+.|+.|++.+..++.++- ++..+ -| |...+.
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 24456666667899999999998887776541 11111 11 111111
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 001797 423 --------VIINGLCRCSDLEGACRVFEEMIACGLKPNNF-----------VYTTLIQAHLRQNRFEEAINILKGMTGKG 483 (1012)
Q Consensus 423 --------~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 483 (1012)
..|..|.+.=+....-.+...++..++.-+.. .-..|+.-.-+.+++.--...++.....|
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG 868 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG 868 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 12222322222222222222222211111100 00112222334445555555666666666
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCCCCCC
Q 001797 484 VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEM------LNCGIAPN 557 (1012)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~ 557 (1012)
.. |..++|.|...|...++-.+- ..+. +...=+....-||...+..-|.-.+++- +. +...
T Consensus 869 ~~-d~a~hnAlaKIyIDSNNnPE~------fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~--vcNe 935 (1666)
T KOG0985|consen 869 SQ-DPATHNALAKIYIDSNNNPER------FLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN--VCNE 935 (1666)
T ss_pred Cc-chHHHhhhhheeecCCCChHH------hccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH--hcCc
Confidence 55 666777766666554432221 0111 1111111222233322222111111100 00 0000
Q ss_pred HHHHHHHHHHHHhcCChHHH-----------HHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001797 558 DIIYTTLIDGHCKEGNVKEA-----------FSTFRCMLGRGI--LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGL 624 (1012)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 624 (1012)
-..|....+.+.+..+.+-= ..+.++....++ ..|+.....-+.++...+-..+-+++++++.-.+-
T Consensus 936 NSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 936 NSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred hhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 11122222222222222111 122223322222 23455556666777777777888888877764311
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001797 625 V--PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYT 702 (1012)
Q Consensus 625 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 702 (1012)
. -+...-+.++-...+ .+.....+..+++-.-. .| .+.......+-+++|..+|++.-- +..+..
T Consensus 1016 ~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~ 1082 (1666)
T KOG0985|consen 1016 VFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQ 1082 (1666)
T ss_pred ccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHH
Confidence 1 111122333322222 34455555665554321 11 233344556678888888876532 444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
.||. .-+..+.|.++.++.. ....|..+..+-.+.|...+|++-|-++ +++..|...++...+.|+
T Consensus 1083 VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc
Confidence 5553 3567788887777643 3457888888888888888888776543 456788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
|++-.+.+....++.-.|... ..|+.+|++.++..+-++++ ..||......+++-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 999888888777765555554 57888888888887776654 467777778888888888888888777665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 863 MVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 863 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
.- .|..|+..+...|+++.|.+..+++- +..+|.....+|...+.+.-|
T Consensus 1220 vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1220 VS---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hh---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH
Confidence 42 46677777777888888777665542 445676666666666555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-12 Score=132.83 Aligned_cols=362 Identities=13% Similarity=0.110 Sum_probs=232.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 001797 555 APNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV--ITYS 632 (1012)
Q Consensus 555 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 632 (1012)
..|...+-..+-.+-+.|....|++.|...+.. .|-.-.+|..|.... .+.+.+. .+... ...|. ..--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHhc-CcccchHHHHH
Confidence 334444444444555666677777777666554 122333333332221 1222221 11111 11111 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHH
Q 001797 633 SLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLT--PTVVTYTTIIDGYCK 710 (1012)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~ 710 (1012)
.+..++....+.+++++-.+.....|++.+...-+....+.....++|+|+.+|+++.....- .|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 233455566677888888888888887777666666666777778888888888888876211 1455666554 333
Q ss_pred cCCHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 711 SGNLTEAFQLVNEMPS--RGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~--~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
..+-. +.++.+-.. ..+.| .|...+.+-|+-.++-++|...|+++++.+|....+|..++.-|...++...|.+
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 122221111 11333 4666777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 789 LLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 789 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.++..++- .+.|...|-.|+.+|.-.+...=|+-+|+++.+ +.| |...|.+|+.+|.+.++.++|++.|..++..|
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888874 234777888888888888888888888888876 445 67788888888888888888888888888643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR----GLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 868 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
- .+...+..|++.|-+.++.++|...|++.++. |...+ ..+-.-|+.-+.+++++++|.........
T Consensus 463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2 24567778888888888888888888877763 21112 22222366677788888888777766654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-10 Score=119.55 Aligned_cols=599 Identities=13% Similarity=0.123 Sum_probs=333.8
Q ss_pred HHHHHHHHHhhhcCC---CchHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 138 QILESFLMCYRERNV---SGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVY 214 (1012)
Q Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~ 214 (1012)
..+.++-+|+..|-. .-|.+|-.-.....++|++-.-...|+++++.....--...|-..+.-+-..+-++.+..+|
T Consensus 82 ~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 344555555443321 34578888888999999999999999999765555445677888888888888889999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 001797 215 DVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRL 294 (1012)
Q Consensus 215 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 294 (1012)
++.+... +..-+-.|..+++.+++++|.+.+..+...... ..+.|. .+-..|+-+-+...++-+.
T Consensus 162 rRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f----------~sk~gk-Sn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 162 RRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF----------VSKKGK-SNHQLWLELCDLISQNPDK 226 (835)
T ss_pred HHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhh----------hhhccc-chhhHHHHHHHHHHhCcch
Confidence 9998753 334677788899999999998888876553100 011122 2333455544444443322
Q ss_pred h---HHHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 295 E---DAKLLLKKMYDLKLNPNE--VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKG 369 (1012)
Q Consensus 295 ~---~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (1012)
- ....++..+... -+|. ..|.+|.+.|.+.|.++.|.+++++.... ...+.-++.+-++|..-..-.-+..
T Consensus 227 ~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH
Confidence 2 222333333332 2333 45677777777777777777777777654 2344445555555543221111111
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 370 LMTEMLRL-GINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACG 448 (1012)
Q Consensus 370 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 448 (1012)
+ +-.... |-+.+.. +++-.+.-|+.+..+.. .+++.- ++..+
T Consensus 303 m-e~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~--------~~lNsV---------------lLRQn 345 (835)
T KOG2047|consen 303 M-ELADEESGNEEDDV-------------DLELHMARFESLMNRRP--------LLLNSV---------------LLRQN 345 (835)
T ss_pred H-hhhhhcccChhhhh-------------hHHHHHHHHHHHHhccc--------hHHHHH---------------HHhcC
Confidence 0 000001 1011111 12222233333333220 000000 00110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 001797 449 LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLP------DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPN 522 (1012)
Q Consensus 449 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 522 (1012)
+.++..|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|+.+|++..+...+--
T Consensus 346 -~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 346 -PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred -CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 122223322222 1234444444444444432 111 123455556666666666666666666655432211
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001797 523 ---LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVL 599 (1012)
Q Consensus 523 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (1012)
..+|..-...-.+..+++.|..+.+..... |.+.. ..+...+..-++. + ..+...|...
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v--P~~~~------~~~yd~~~pvQ~r-l---------hrSlkiWs~y 483 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHV--PTNPE------LEYYDNSEPVQAR-L---------HRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC--CCchh------hhhhcCCCcHHHH-H---------HHhHHHHHHH
Confidence 123333344444556666777766666542 22211 1223333322221 0 1145567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh---
Q 001797 600 IHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI-VTYNALIDGLCK--- 675 (1012)
Q Consensus 600 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 675 (1012)
++..-..|-++....+++++++..+. ++.........+....-++++++.+++-+..-..|++ ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 77777778888888888888876543 3333223333344556678888888876665334443 346655554443
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTI--IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNMEK 751 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~ 751 (1012)
...++.|+.+|++.++ |++|...-+--| ...--+.|-...|++++++.... +++... .|+..|.--...--...
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2468899999999988 666654322222 22233568888899999987654 554433 56666654444334556
Q ss_pred HHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 001797 752 ALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITP--NHVTYTILIDYHCKAGTM 818 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 818 (1012)
.+.+|+++++.-|+.. ......++.-++.|.++.|..++....+- ++| +...|...-..-.+.|+-
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCH
Confidence 6788888888766554 45556777888888899888888776553 333 556677777777788883
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-13 Score=136.69 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=172.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 567 GHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKE 646 (1012)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (1012)
.+.-.|+...|..-|+..+.....++ ..|--+...|....+.++-.+.|....+.++. ++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 44556888888888888887643322 23666777888888999999999988877654 66677777777888888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 001797 647 AFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPS 726 (1012)
Q Consensus 647 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 726 (1012)
|..-|++.++.. +.+...|..+..+..+.+.++++++.|++...+ ++..+..|+....++..++++++|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988864 336777888888888889999999999999887 455677888888999999999999999998876
Q ss_pred CCCCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 727 RGVTPD-------N--FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 727 ~~~~pd-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
. .|+ . .+..+++..- -.+++.+|..+++++++.+|....+|..|+..-.++|+.++|+++|++...
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 333 1 1222222222 338899999999999999999999999999999999999999999988754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-10 Score=124.63 Aligned_cols=506 Identities=13% Similarity=0.088 Sum_probs=292.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 001797 430 RCSDLEGACRVFEEMIACGLKPNNFVYTTLIQA---HLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMED 506 (1012)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 506 (1012)
+.+...+++.-+.....++.+.+..++-.+-.+ |+..++.+++ ++-........|. .+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~R--------------e~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPR--------------ENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhcccc--------------ccHHH
Confidence 445667777777777777666666555554432 3445555555 2222222211121 11222
Q ss_pred HHH----HHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001797 507 ARS----CLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFR 582 (1012)
Q Consensus 507 A~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (1012)
+.- .+.++....+.-|...|..+.-++...|+++.+.+.|++....- ......|..+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 211 11222222233456666777777777888888888888876532 3445677777777888888778888777
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 001797 583 CMLGRGILPDLK-TYSVLIHGLS-RCGKIHEALEVFSELQDK--GL--VPDVITYSSLISGFCKQ-----------GFIK 645 (1012)
Q Consensus 583 ~~~~~~~~~~~~-~~~~li~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~ 645 (1012)
........|+.. .+......|. +.+..++++++-.+.... +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 765543223332 2222222222 345666666666655541 10 11223333333333221 1245
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 001797 646 EAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725 (1012)
Q Consensus 646 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 725 (1012)
++.+.+++..+.+.. |..+...+.--|.-.++++.|.....+..+.+...+...|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 566777777665422 3233333444466667777777777777776555677777777777777777777777777665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCCHH
Q 001797 726 SRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK--HITPNHV 803 (1012)
Q Consensus 726 ~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 803 (1012)
+. ..-|......-+..-..-++.+++......++..--....+ ...++-....+....+.-. .......
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccch
Confidence 54 22222222222223334566666666665554321100000 0111111112222221100 0011122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP--N------FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVI 874 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 874 (1012)
++..+.......+ +.+..-. .+......| + ...|......+.+.++.++|...+.++.. +.| .+..
T Consensus 612 ~sr~ls~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~ 686 (799)
T KOG4162|consen 612 TSRYLSSLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV 686 (799)
T ss_pred hhHHHHHHHHhhh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH
Confidence 3333322221111 1111000 022111222 2 12455666778889999999988888874 555 6678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHH--HHHHHhhCCCCCCHHHHHHHHHH-
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLK--LLDEMGDKEIKLSHATCCILISS- 951 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~ll~~- 951 (1012)
|+..+..+...|++++|.+.|..++..+ |.+......++.++.+.|+..-|.+ ++..+++ ++|.++..|..++.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Confidence 8888899999999999999999999997 7778999999999999999988888 9999998 88999988888877
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001797 952 VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~ 970 (1012)
+.+.|+.++|-+.|+..++
T Consensus 764 ~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHccchHHHHHHHHHHHh
Confidence 8899999999999998887
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=149.86 Aligned_cols=285 Identities=10% Similarity=0.071 Sum_probs=221.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYC--TLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~--~l~~~~~~~g~~~~A~ 753 (1012)
.|+++.|.+.+....+..-.| ...|........+.|++++|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 689999998887765542111 233333344557899999999999999873 56654332 3356778899999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV-------TYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
..++++.+..|.++.++..++..|.+.|+|++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865443221 23333333344455566666776
Q ss_pred HHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC
Q 001797 827 EMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN 906 (1012)
Q Consensus 827 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 906 (1012)
.+.+. .+.++.....++..+...|+.++|.+.+++..+ ..|++... ++.+....++.+++++.+++..+.. |.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 66443 445777888999999999999999999999986 45555433 2333446699999999999999886 788
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 907 QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 907 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 971 (1012)
+..+..++..+...|++++|.+.++++.+ ..|++..+..+...+.+.|+.++|.+++++-+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 7899999888888899999999999999987663
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-14 Score=152.17 Aligned_cols=204 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 001797 758 EMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP- 835 (1012)
Q Consensus 758 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 835 (1012)
.+++.++..+.+|-+++++|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 33444444444555555555555555555555554444 233 334444444444444555555555554442 222
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLA 914 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 914 (1012)
+...|..|+..|.+.++++.|.-.|+++++ +.| +......++..+.+.|+.++|+.+++++.... |-|+..-...+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 222444445555555555555555555543 444 23333344444555555555555555555544 33444444445
Q ss_pred HHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
.++...+++++|...++++.+ +.|+....+.+++. |-+.|+.+.|+..|--+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555555555555544 44555444444444 4444555555554444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-12 Score=134.14 Aligned_cols=284 Identities=14% Similarity=0.085 Sum_probs=226.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 001797 590 LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNAL 669 (1012)
Q Consensus 590 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 669 (1012)
..+........+-+...+++.+..++++.+.+..+ +....+..-|.++.+.|+..+-+.+-.++++. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 34566667777788889999999999999988743 35566666677888999988888888888886 35578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNM 749 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~ 749 (1012)
+..|.-.|+.++|++.|.+....... =...|-.+...|.-.|..|+|+..+..+-+. ++-....+..+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 99999999999999999988764221 1247888899999999999999998887653 222223344555668889999
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 750 EKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKH--IT----PNHVTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 750 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
+.|.++|.++....|.++.+++.++-.....+.+.+|...|+..+..- +. .-..+++.|+.++.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999998876310 11 133468889999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001797 824 LLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVD 880 (1012)
Q Consensus 824 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 880 (1012)
.+++.+.. .+.+..++.+++-.|...|+++.|++.|.+++ .+.|+..+...++.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 99998874 34578889999999999999999999999988 48887765555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=151.40 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001797 643 FIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGL--TPTVVTYTTIIDGYCKSGNLTEAFQL 720 (1012)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l 720 (1012)
+..+|+..|+++-.. +.....+...++.+|...+++++|.++|+.+..... --+...|.+.+.-+-+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 457788888874443 333446667788888888888888888888876511 1245566666544322 1111222
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 001797 721 VNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP 800 (1012)
Q Consensus 721 ~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 800 (1012)
-+++++. -+-.+.+|.++.++|.-.++.+.|++.|+++++.+|....+|..++.=+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 3334432 2335679999999999999999999999999999998889999999999999999999999999876 334
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 001797 801 N-HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSM 877 (1012)
Q Consensus 801 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 877 (1012)
. ..+|..++..|.+.++++.|+-.|+++.+ +.| +.+....++..+.+.|+.++|+.+++++.. ++| |+-.-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHH
Confidence 3 34677788889999999999999999986 455 666777888889999999999999999986 555 6666677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+..+...+++++|+..++++.+.. |.+..++..++.+|.+.|+.+.|+.-+.-|.+ ++|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccch
Confidence 7888899999999999999999885 77889999999999999999999999999887 6675443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=161.30 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 704 IIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 704 li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
+...+.+.|++++|++++++......+|+.. .|..+.......++++.|+..+++++..++..+..+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3455556666666666664443332123222 333344444555666666666666666655555555555555 46666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHccCChhHHHHHHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKPNFRTYTSLLHGYAGIGKRSEMFALFD 861 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 861 (1012)
+++|.+++++..+. .+++..+..++..+...|+++++..+++++.... .+++...|..++..+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666555443 2344455555666666666666666666655421 23355556666666666666666666666
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC
Q 001797 862 EMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL 940 (1012)
Q Consensus 862 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 940 (1012)
++++ ..| |......+++.+...|+.+++.++++...... +.++..+..++.++...|+.++|..+++++.+ ..|
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--ccc
Confidence 6665 344 34555566666666666666666666665554 45555666666666666666666666666665 456
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 941 SHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 941 ~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+++.....++. +...|+.++|.+++.++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 55555555544 5566666666666655543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-12 Score=128.54 Aligned_cols=362 Identities=13% Similarity=0.099 Sum_probs=260.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hh-hHH
Q 001797 590 LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN-IV-TYN 667 (1012)
Q Consensus 590 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~ 667 (1012)
..|...+......+-+.|..+.|++.|......-+ -.-..|..|... .-+.+. ...... +.+.| .. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHHHH
Confidence 33544444455566778889999999988776421 132333333322 222222 222222 22222 11 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC----CHHHHHHHHHHH
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTP----DNFVYCTLVDGC 743 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p----d~~~~~~l~~~~ 743 (1012)
-+..++......+++..-.......|++.+...-+....+.-...++++|+..|+++.+. .| |..+|..++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHH-
Confidence 234455566678888888888888887766655555556667788999999999999886 33 34466555433
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAE 822 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 822 (1012)
+. +-.+---+-+.+.+.+.-.+.+.-.+++-|.-.++.++|...|++.++. .| ....|+.+++-|....+...|+
T Consensus 309 -~~-~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KN-DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hh-hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 22 2222222333444445555577777888899999999999999999984 44 4568999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+-++++++- .+.|...|-.|+.+|.-.+.+.=|+-+|+++.+ .+| |...|..|+++|.+.++.++|++-|+++...
T Consensus 385 ~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999974 344888999999999999999999999999997 667 8899999999999999999999999999998
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK----E-IKLSHATCCILISS-VYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~ 971 (1012)
+ ..+..++..|++.|-+.++.++|...+++.++. | +.|........++. +.+.+++++|......+.+.
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 7 336789999999999999999999999987652 2 33433333333444 77999999999988877765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=145.68 Aligned_cols=290 Identities=11% Similarity=0.060 Sum_probs=208.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHH
Q 001797 674 CKSGELERARELFDGIFAKGLTPT-VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNME 750 (1012)
Q Consensus 674 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~ 750 (1012)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|++++|.+++.+..+. .|+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4578899999888887765 344 334444566777889999999999888764 34432 3344567778889999
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHH
Q 001797 751 KALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTI---LIDYHCKAGTMKDAEHLLVE 827 (1012)
Q Consensus 751 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 827 (1012)
+|...++.+.+..|.++.++..++..|...|++++|.+.+..+.+.+..+....... ........+..+++.+.+.+
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999988899999999999999999999999988754432221111 11111233333334445555
Q ss_pred HHHCC---CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 828 MQKRV---LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVI---YSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 828 ~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+.+.. .+.+...+..++..+...|++++|.+.+++.++. .||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54421 1136778888889999999999999999999873 444331 111222334567888999999999888
Q ss_pred CCccCH--HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 902 GLVLNQ--NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 902 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
. |.++ ....++++.+.+.|++++|.+.++++......|++..+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 6677 788899999999999999999999533222679888877666668899999999999998655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-12 Score=123.89 Aligned_cols=447 Identities=13% Similarity=0.076 Sum_probs=286.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 531 REYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
.-+....++..|+.+++--...+-.....+-..+..++.+.|++++|...+..+... ..++...+..|.-++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHH
Confidence 334456677777777776654432223334445667888888899988888887764 3556667777777777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
+|..+-.+..+ ++.....+.....+.|+.++-..+.+.+... ..--.+|.......-.+++|++++++++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654332 4445555666667788888777777766542 1223455556666667899999999988
Q ss_pred hCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 691 AKGLTPTVVTYTTI-IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 691 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
.. .|+....|.. .-+|.+..-++-+.+++.-.... .||.. ..+..+....+.=+-..|..-.+.+........
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~- 253 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY- 253 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-
Confidence 75 3455554443 34566788888888888877764 44443 444444444443333334444444444332221
Q ss_pred hHHHHHHHHHhc-----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 001797 769 SFNALLNGLCKS-----QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843 (1012)
Q Consensus 769 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 843 (1012)
..+.-.+++ .+-+.|++++-.+.+ .-|. +-..|+-.|.++++.++|..+.+.+. ...|-......+
T Consensus 254 ---~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgv 324 (557)
T KOG3785|consen 254 ---PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGV 324 (557)
T ss_pred ---hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHH
Confidence 122222332 244667777777665 2333 33567777899999999999887654 233433333333
Q ss_pred HHHHH-----ccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 844 LHGYA-----GIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 844 ~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
+.+-. ......-|...|+-.-+.+..-| ...-..++..+.-..++++.+.+++....-- ..|...-..++.++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHH
Confidence 33221 11233345555544333222222 2233455666666778999999888877653 34555666799999
Q ss_pred hccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhccccccccc
Q 001797 918 CKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTS 997 (1012)
Q Consensus 918 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1012)
+..|++.+|++++-++..-.++.+.....++.++|...++.+-|..+ |++..-..+..+..++|.++|.. ..
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk-----~~ 475 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYK-----AN 475 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHH-----HH
Confidence 99999999999998876533444455556677779999999999887 56667667888999999999998 78
Q ss_pred ccHHHHHHhccccc
Q 001797 998 NSWKEAAAIGIADQ 1011 (1012)
Q Consensus 998 ~~~~~~~~~~~~~~ 1011 (1012)
.++..|+||+.++.
T Consensus 476 eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 476 EFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHhhhHHHc
Confidence 89999999998764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-09 Score=121.24 Aligned_cols=663 Identities=10% Similarity=-0.019 Sum_probs=324.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 001797 258 AIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKN 337 (1012)
Q Consensus 258 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (1012)
+...|+..|-+.++..+. -...|..|...|+..-+...|.+.|+...+.. ..+...+-.....|....++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344555555444444332 24456666666666666666666666666544 3445555666666666666666666533
Q ss_pred HHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001797 338 EMVTFGI-KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSP 416 (1012)
Q Consensus 338 ~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 416 (1012)
...+... ..-...|....-.|.+.++...|..-|+...+.. +.|...|..+..+|...|++..|+++|.+....+ |.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 3222110 0011223333344555666666666666666543 2355666666666666666666666666665543 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CC
Q 001797 417 TAYTCNVIINGLCRCSDLEGACRVFEEMIACG------LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTG-------KG 483 (1012)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~ 483 (1012)
+...-.-..-..|..|.+.+|+..+...+..- ...-..++-.+...+...|-..+|...+++.++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33333333344456666666666665554320 000011222222222222222233333332221 11
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCC
Q 001797 484 VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM---Q---AADRYFQEMLNCGIAPN 557 (1012)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~ 557 (1012)
...+...|-.+.+ |..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++ ...+
T Consensus 709 ~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 1112222222211 112222211 00 11221111121111111111 1 11111111111 1122
Q ss_pred HHHHHHHHHHHHh----c----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001797 558 DIIYTTLIDGHCK----E----GNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVI 629 (1012)
Q Consensus 558 ~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 629 (1012)
..+|..++..|.+ . .+...|+..+.+.++.. ..+...|+.|.-. ...|.+.-|...|-+-....+. ...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chh
Confidence 3445555544433 1 12345667777666542 3356666666544 5557777777777665554332 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--Hh--CCCCCCHHHHHHHH
Q 001797 630 TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGI--FA--KGLTPTVVTYTTII 705 (1012)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~p~~~~~~~li 705 (1012)
+|..+...+.+..+++.|...|....... +.|...|..........|+.-++..+|..- .. .|-.|+..-|..-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 67777777777888888888888776653 335555655555555667777777777652 21 13334444444444
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CchhhH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSR---------GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQK---GL---ASTSSF 770 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~---------~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~ 770 (1012)
......|+.++-+...+.+... +.+.+...|...+...-+.+.+..|.+...+++.. .. ..+.+-
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4455666666555444443221 23334456666666666666666666665554321 11 111244
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCh-HHHHHHHHHHH
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR-VLKPNF-RTYTSLLHGYA 848 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~ 848 (1012)
..+++.++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|+++..- .-..|. +....++.+..
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 4566777777777766544332211 00111111111 113457788888888887652 122232 23445556666
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCc-cCHHHHHHHHHHHhccccHH
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF---LRGLV-LNQNVYTSLANSLCKEEEFY 924 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~ 924 (1012)
..+..+.|...+-+.... -+|+..+...+.-.+.-..+-.......+++. ..... -++. ...-..+.++|+-.
T Consensus 1087 ~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~--ll~e~i~~~~~r~~ 1163 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG--LLKELIYALQGRSV 1163 (1238)
T ss_pred hcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh--HHHHHHHHHhhhhH
Confidence 677777777776666652 34455555555544333333222222222222 22100 0111 11223566778877
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 925 KVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 925 ~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
...+.+++..- ..|.++..|.++..
T Consensus 1164 ~vk~~~qr~~h--~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1164 AVKKQIQRAVH--SNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 77788888776 67888888888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-12 Score=142.14 Aligned_cols=290 Identities=15% Similarity=0.088 Sum_probs=155.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|+++.|.+.+.+..+.... ....+........+.|+++.|...+.++.+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456677777766665554322 1233334445566667777777777766654322222233334556666777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHHHHH
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYC-TLVDG---CCRDGNMEKALSLFLEMV 760 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~-~l~~~---~~~~g~~~~A~~~~~~~~ 760 (1012)
.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+..+ ...+. ....+ ....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777776653 2244556666667777777777777777776654332 22121 11111 122222233334444454
Q ss_pred HcCC----CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 761 QKGL----ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT---YTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 761 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
+..| +++..+..++..+...|+.++|.+.+++..+. .|+... ...........++.+++.+.+++..+. .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence 4444 34466666666666666666666666666653 222221 011111223345566666666665543 2
Q ss_pred CCCh--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 834 KPNF--RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 834 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+.|+ ....++++.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233 444566666666666666666666433323556666666666666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-08 Score=108.00 Aligned_cols=384 Identities=15% Similarity=0.126 Sum_probs=170.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 001797 357 GICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEG 436 (1012)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (1012)
+-....++.+|..+++.+.... .-..-|..+.+-|...|+++.|.++|-+.- .++-.|.+|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344555566666665554331 112234444555555566666655554321 23334555566666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001797 437 ACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA 516 (1012)
Q Consensus 437 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 516 (1012)
|.++-++.. |.......|.+-..-+-+.|++.+|.+++-.... |+. -|..|-+.|..++.+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 655554433 2222333444444445555666555555433221 222 24455555555555555443211
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 001797 517 NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLG---------- 586 (1012)
Q Consensus 517 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 586 (1012)
. .-..|-..+..-+-..|++..|..-|-+.-+ |.+-+++|-..+-+++|.++-+.--.
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 1 0112333444455555555555554433321 33344444444444444433221000
Q ss_pred --CCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 587 --RGILPDL--------KTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCE 656 (1012)
Q Consensus 587 --~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 656 (1012)
+.+-.+. -....-++..+..+.++-|.++-+-..+. -.|.+ ...+..-+...|++++|.+.+-+.++
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 0000000 00111222333444455555544433322 12222 22333345567777777777766665
Q ss_pred CCCCCChhhHH-------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHH
Q 001797 657 SGITPNIVTYN-------------------ALIDGLCKSGELERARELFDGIFAKGLTPTV--VTYTTIIDGYCKSGNLT 715 (1012)
Q Consensus 657 ~~~~~~~~~~~-------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~ 715 (1012)
.+. -..||. .-+.++.+.+++..|..+-+.- .|+. ..+..-..+-...|++.
T Consensus 1024 lnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~ 1096 (1636)
T KOG3616|consen 1024 LNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFL 1096 (1636)
T ss_pred ccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchh
Confidence 421 011111 1112333344444444333221 1221 22333334444566666
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----------------HHHHcCCCchhhHHHHHHHHHh
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFL----------------EMVQKGLASTSSFNALLNGLCK 779 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~ 779 (1012)
+|..++-+.. +||.. ++-|...+.|..|+.+.+ ..++.|......+..-+.-..+
T Consensus 1097 kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq 1167 (1636)
T KOG3616|consen 1097 KAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQ 1167 (1636)
T ss_pred hhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 6666554432 44432 122223333333333322 2344455555666667777778
Q ss_pred cCcHHHHHHHHHHH
Q 001797 780 SQKIFEANKLLEDM 793 (1012)
Q Consensus 780 ~g~~~~A~~~~~~~ 793 (1012)
.|+|.+|...+-++
T Consensus 1168 ~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1168 AGDWRKAVDALLKI 1181 (1636)
T ss_pred cccHHHHHHHHhhh
Confidence 88888887777665
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-12 Score=139.78 Aligned_cols=284 Identities=15% Similarity=0.125 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHH
Q 001797 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV--TYNALIDGLCKSGELERAR 683 (1012)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 683 (1012)
.|+++.|.+.+....+....| ...+........+.|+++.|...+.++.+. .|+.. ........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665544432111 222222233346667777777777776654 33322 2122345566667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001797 684 ELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-------VYCTLVDGCCRDGNMEKALSLF 756 (1012)
Q Consensus 684 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-------~~~~l~~~~~~~g~~~~A~~~~ 756 (1012)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776653 2245556666667777777777777777776654332211 1222222222223334444444
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 757 LEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
+...+..++++.....++..+...|+.++|.+.+++..+. +|++.. .++.+....++.+++.+..++..+. .+.|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCC
Confidence 4444444444555555666666666666666666665552 333321 1222333446666666666665543 2334
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+..+..++..+...|++++|.+.|+.+++ ..|+...+..++.++.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666666666654 455655555566666666666666666665544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-08 Score=104.55 Aligned_cols=220 Identities=12% Similarity=0.122 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVD 741 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~ 741 (1012)
...|..+++..-..|-++....+|+++++..+. ++.........+-.+..++++.+.+++-+..=-.|+.. +|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 445666777777778888888888888875332 22222223333455667788888888877652234433 5666655
Q ss_pred HHH---hcCCHHHHHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh
Q 001797 742 GCC---RDGNMEKALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH--VTYTILIDYHCK 814 (1012)
Q Consensus 742 ~~~---~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 814 (1012)
-+. ....++.|+.+|+++++..|+.. ..|...+..-.+.|-...|..++++.... +++.. ..|+..|.--..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 543 23467888888888888555332 45555566666778888888888886553 34322 355555543322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHH---HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCC
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRT---YTSLLHGYAGIGKRSEMFALFDEMVERGVEP--DGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 887 (1012)
.=-+..-..+|+++++. -|+... .......=.+.|..+.|+.++.-..+. .+| +...|..--..-.+.|+
T Consensus 635 ~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 22233344555555553 233221 112333445667777777776655542 233 45556555555566676
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-08 Score=111.64 Aligned_cols=609 Identities=13% Similarity=0.141 Sum_probs=290.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 001797 318 TLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYREN 397 (1012)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 397 (1012)
.++.+|...|+++++.-...+ .|..||.. .++....+ -..+.+.++...|.+. .|...-.+.+.+.+...+
T Consensus 486 KVi~cfAE~Gqf~KiilY~kK---vGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYAKK---VGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHhcchhHHHHHHHH---cCCCccHH---HHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHH
Confidence 345566666666666555433 35566643 33444433 4666666666666654 234445566666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 398 NMAKAYELLVDMKKRNLSPTAYTC-NVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINIL 476 (1012)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 476 (1012)
...++..++-..++.+ .|+.... +.++..- .-.|-++-+.++..+.. ...-+..+.+.+-+.|-...|++.+
T Consensus 557 ~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-----L~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehy 629 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLN-SPDEGHLQTRLLEMN-----LVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHY 629 (1666)
T ss_pred hhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-----hccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhc
Confidence 6666666666666554 4443222 2222211 11122222222322211 1222555666677777777777766
Q ss_pred HHhhhCCCCCCHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 477 KGMTGKGVLPDVFCYNSL-----ISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLN 551 (1012)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (1012)
.++... . ..+..+.+ +-.|.-.-.++++.++++.|...++.-+..+...+..-|+..=-.+.-.++|+....
T Consensus 630 tDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks 706 (1666)
T KOG0985|consen 630 TDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKS 706 (1666)
T ss_pred ccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhcc
Confidence 654331 0 11111111 223444556777888888888777776766666666666655555555555555432
Q ss_pred C-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------CC---CC-----CHHHHHHHH
Q 001797 552 C-----------GIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR------------GI---LP-----DLKTYSVLI 600 (1012)
Q Consensus 552 ~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~---~~-----~~~~~~~li 600 (1012)
. ++..|+.+.-..|.+.|+.|++.+..++.++---. .. .| |..-+..=+
T Consensus 707 ~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdl 786 (1666)
T KOG0985|consen 707 YEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDL 786 (1666)
T ss_pred chhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHH
Confidence 1 24556666677888999999998888776542110 00 00 111111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--------------------------HHHHhcCCHHHHHHHHHHH
Q 001797 601 HGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLI--------------------------SGFCKQGFIKEAFQLHEKM 654 (1012)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--------------------------~~~~~~g~~~~A~~~~~~~ 654 (1012)
-.|.-.++..+-+++|-+-..-+- .+.....++ .-..+.++..--..+++..
T Consensus 787 vlYLyrnn~~kyIE~yVQkvNps~--~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~ 864 (1666)
T KOG0985|consen 787 VLYLYRNNLQKYIEIYVQKVNPSR--TPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESL 864 (1666)
T ss_pred HHHHHHhhHHHHHHHHHhhcCCcc--cchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHH
Confidence 233334444444444443322111 112212211 1223444555566667777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHH-HH---HHHHH-----HhC------------CCC--------CCHHHHHHHH
Q 001797 655 CESGITPNIVTYNALIDGLCKSGELERA-RE---LFDGI-----FAK------------GLT--------PTVVTYTTII 705 (1012)
Q Consensus 655 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~---~~~~~-----~~~------------~~~--------p~~~~~~~li 705 (1012)
+..|.. |..++|+|...|..+++-.+- ++ .|+.. .++ |.. .....|....
T Consensus 865 i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~a 943 (1666)
T KOG0985|consen 865 IQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQA 943 (1666)
T ss_pred HhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHH
Confidence 777755 888899988888776543221 10 11111 111 100 0011122222
Q ss_pred HHHHHcCCHH---HHH--------HHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--hhH
Q 001797 706 DGYCKSGNLT---EAF--------QLVNEMPSRGVT--PDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST--SSF 770 (1012)
Q Consensus 706 ~~~~~~g~~~---~A~--------~l~~~~~~~~~~--pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 770 (1012)
+-+.+..+.+ +.+ .+.++.+..+++ .|+.....-+.++...+-..+-++++++++-.+.... ...
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred HHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 3333333322 111 222222222221 2344445556677777777788888887765433222 111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV------------------ 832 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 832 (1012)
..|.-.-.-.-+.....+..+++-.. -.|+. +......+-+++|..+|++.--.+
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdny-Da~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNY-DAPDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYE 1096 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccC-CchhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence 11111111112222333333333221 01111 112222333333333333211000
Q ss_pred ---CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 001797 833 ---LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV 909 (1012)
Q Consensus 833 ---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 909 (1012)
--..+..|..++.+-...|.+.+|++-|-++ .|+..|...++...+.|+|++-.+++..+.++. ..+.+
T Consensus 1097 fAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~i 1168 (1666)
T KOG0985|consen 1097 FAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPYI 1168 (1666)
T ss_pred HHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCccc
Confidence 0012334566666666666666665544332 144556666666666666666666665555553 23334
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 910 YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
-..|+-+|.+.++..+-+++. .-|+..........++..|.++.|.-+|..+-.
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 445555666666655544433 235555555555555666666666666655444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-08 Score=110.68 Aligned_cols=649 Identities=10% Similarity=-0.011 Sum_probs=387.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 291 NKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGL 370 (1012)
Q Consensus 291 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (1012)
.++...|...|-+..... +.=...|..|+..|+..-+...|.+.|+.+.+.+ ..+...+....+.|.+..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 455777777777776653 2234678888888888888888999999888765 45777888888889999999998888
Q ss_pred HHHHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 371 MTEMLRLGINPDT--QTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACG 448 (1012)
Q Consensus 371 ~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 448 (1012)
.-...+.. +.-. ..|.-..-.|...++...|..-|+...... |.|...|..++.+|..+|++..|.++|.++...
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 44443321 1111 223334445667888888888888888776 678888899999999999999999999887764
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----
Q 001797 449 LKPNN-FVYTTLIQAHLRQNRFEEAINILKGMTGK------GVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA----- 516 (1012)
Q Consensus 449 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 516 (1012)
+|+. ..-.-.....|..|++.+|+..+...... +...-..++-.+...+.-.|-..+|...+++-++
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443 22223334567788888888888766532 1111122333333333333444444444443322
Q ss_pred --CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHhCC
Q 001797 517 --NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNV---K---EAFSTFRCMLGRG 588 (1012)
Q Consensus 517 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~ 588 (1012)
.....+...|..+.+ |..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++
T Consensus 705 l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 111112222222222 222222221 11 22222222222212222221 1 11111111111
Q ss_pred CCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 589 ILPDLKTYSVLIHGLSR--------CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGIT 660 (1012)
Q Consensus 589 ~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 660 (1012)
...+..+|..++..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11234455555555444 123346788888776642 2366677776654 55577777777776665543 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhCCCCCCHHHH
Q 001797 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEM----PSRGVTPDNFVY 736 (1012)
Q Consensus 661 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~----~~~~~~pd~~~~ 736 (1012)
.+..+|..+...+.+..+++.|...|....... +.+...|..........|+.-++..+|..- ...|--|+..-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 467788888888999999999999999888763 335667766666667788888888888762 122334454444
Q ss_pred HHHHHHHHhcCCHHH----------HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHHHH
Q 001797 737 CTLVDGCCRDGNMEK----------ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK-HITPNHVTY 805 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~----------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 805 (1012)
..........|+.++ |--..++.....|+...+|...+......+.+.+|.+...+.+.- ...-+...|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444455666554 333455666677888899999999999999999998888776421 011233334
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHH-HHHHHH
Q 001797 806 T----ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-GVEPDGV-IYSMMV 879 (1012)
Q Consensus 806 ~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~ 879 (1012)
+ .....++..|.++.|..-+...-. ..+..+-..-+ +..-.|+++++.+.|++++.- .-..|.. ....++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 4 455566777888866654432211 11111111111 124578999999999999862 2222322 233445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH---HHHHHHHH-HHhc
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA---TCCILISS-VYEA 955 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ll~~-~~~~ 955 (1012)
.+....+..+.|...+-+..... +++......|...+.-..+-.....+.+++.. ...... ..-.++.. +..+
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~k--l~k~e~~~~~~~ll~e~i~~~~ 1159 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEK--LLKLEWFCWPPGLLKELIYALQ 1159 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH--hhhhHHhccChhHHHHHHHHHh
Confidence 66677888899999988888875 67777777777776666665555555555543 111111 11123333 6788
Q ss_pred CCHHHHHHHHHHHHH
Q 001797 956 GNIDKATRFLESMIK 970 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~ 970 (1012)
||-.-..+..++...
T Consensus 1160 ~r~~~vk~~~qr~~h 1174 (1238)
T KOG1127|consen 1160 GRSVAVKKQIQRAVH 1174 (1238)
T ss_pred hhhHHHHHHHHHHHh
Confidence 888888888888665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-09 Score=112.80 Aligned_cols=415 Identities=16% Similarity=0.159 Sum_probs=251.9
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
+++...+.+.+.++++ ......|.....--++..|+-++|......-.... ..+.+.|..++-.+....++++|+..+
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555556553 22244555555555677899999999888877643 566788999998888889999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 001797 337 NEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN-LS 415 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 415 (1012)
..+...+ +.|...|.-|.-.-.+.|+++-....-.+..+.. +.....|.....++.-.|++..|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999876 5577778777777778889888888888877752 3356778888888889999999999999887765 24
Q ss_pred CChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 001797 416 PTAYTCNVII------NGLCRCSDLEGACRVFEEMIACGLKPNNF-VYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDV 488 (1012)
Q Consensus 416 ~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (1012)
|+...+.... ....+.|.+++|.+.+..-... ..|.. .--.-...+.+.+++++|..++..++... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5555544333 3345567888888777654332 12222 22345567788999999999999998874 566
Q ss_pred HHHHHHHH-HHHhCCCHHHHH-HHHHHHHHCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 489 FCYNSLIS-GLCKAKKMEDAR-SCLVEMTANGLK---PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563 (1012)
Q Consensus 489 ~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 563 (1012)
..|+.... ++.+-.+.-++. .+|....+.-.. |-....+. ..-..-.+....++..+++.|+++- +..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 66555444 443333444444 555555443111 11111111 1112223444556667777776543 333
Q ss_pred HHHHHHhcCChHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001797 564 LIDGHCKEGNVKEAFSTFRCML--------GRG----------ILPDLKTYS--VLIHGLSRCGKIHEALEVFSELQDKG 623 (1012)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~ 623 (1012)
+...|-.....+ +++++. ..| -+|....|. .++..+-+.|+++.|..+++..++.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH- 400 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Confidence 333332211111 222221 000 134444333 3455666677777777777766654
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001797 624 LVPDV-ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKG 693 (1012)
Q Consensus 624 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 693 (1012)
.|+. ..|..-.+.+...|++++|..++++..+.. .+|...-.--+....+.++.++|.++.......|
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 3332 334444566666777777777777766553 3343333244445556667777776666665554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=152.41 Aligned_cols=259 Identities=19% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 001797 599 LIHGLSRCGKIHEALEVFSELQDKG-LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG 677 (1012)
Q Consensus 599 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 677 (1012)
+...+.+.|++++|++++.+..... ...+...|..+.......++++.|+..++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554433222 1123333333444444455555565555555554322 33334444444 4555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 678 ELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCRDGNMEKALSLF 756 (1012)
Q Consensus 678 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 756 (1012)
++++|.+++.+..++. ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544431 333444445555555555555555555544321 1234445555555555555555555555
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 757 LEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
+++++..|.++.+...++..+...|+.+++.++++...+.. +.|+..+..++.++...|+.++|+.+|++..+. .+.|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d 247 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDD 247 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccc
Confidence 55555555555555555555555555555555555544431 333444445555555555555555555555442 2224
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEM 863 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 863 (1012)
+.....++.++...|+.++|..+..++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-10 Score=120.32 Aligned_cols=455 Identities=15% Similarity=0.131 Sum_probs=205.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001797 501 AKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFST 580 (1012)
Q Consensus 501 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 580 (1012)
.+++...++..+.+.+. ..-...|.....-.++..|+.++|....+..+... ..+.+.|..++-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34444444444444442 11122233323333444455555555555544432 33445555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 001797 581 FRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESG-I 659 (1012)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 659 (1012)
|..++..+ +.|...|.-+.-.-.+.++++.....-.++.+..+. ....|..++.++.-.|++..|..+.++..+.. .
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555543 224445554444445555555555554444443211 33445555555555556666665555555442 1
Q ss_pred CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q 001797 660 TPNIVTYNAL------IDGLCKSGELERARELFDGIFAKGLTPTVVTY-TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD 732 (1012)
Q Consensus 660 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd 732 (1012)
.|+...+... .....+.|..++|.+.+...... ..|...+ .+-...+.+.+++++|..++..++.. .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 2333332211 11233455555555555443322 1122222 23344555666666666666666653 455
Q ss_pred HHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCchhhHHHHHHHHHhcCc-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 733 NFVYCTLVDGCC-RDGNMEKAL-SLFLEMVQKGLASTSSFNALLNGLCKSQK-IFEANKLLEDMADKHITPNHVTYTILI 809 (1012)
Q Consensus 733 ~~~~~~l~~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~ 809 (1012)
..-|...+..+. +-.+.-++. .+|...-+..|....... +.-......+ .+...+++..++++|+++- +..+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 554433333222 222333333 444444443332221111 1111111112 2223344455555554432 12222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCChHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCH-
Q 001797 810 DYHCKAGTMKDAEHLLVEMQK----RV----------LKPNFRTYT--SLLHGYAGIGKRSEMFALFDEMVERGVEPDG- 872 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 872 (1012)
..|-.....+--.++...+.. .| -+|....|+ .++.-+-..|+++.|..+++.++. ..|+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHH
Confidence 222111111111111111111 00 133333333 445556666777777777776663 44432
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-----CHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL-----SHATCCI 947 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~ 947 (1012)
+.|..-+..+...|+.++|..+++++.+.+ .+|..+-..-+.-..++++.++|.++.....+.|..- +....|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 444445566666777777777777776665 2344333345566666677777777666665544210 1112222
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHH
Q 001797 948 LIS---SVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 948 ll~---~~~~~g~~~~A~~~~~~~~~ 970 (1012)
.+. +|.++|++.+|++-|..+-+
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 221 26666777666666655555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-10 Score=113.76 Aligned_cols=404 Identities=14% Similarity=0.133 Sum_probs=191.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 001797 430 RCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARS 509 (1012)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 509 (1012)
...++..|+.+++--...+-.-...+-.-+..++...|++++|...+.-+.+.. .++...+-.|..++.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 344555555555443322211111122223344445566666665555544422 2344444445544455555555555
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 001797 510 CLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGI 589 (1012)
Q Consensus 510 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 589 (1012)
+-.+..+ ++.--..|.....+.++-++...+.+.+.+. ..--.+|.......-.+.+|++++.+.+..
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 4433211 2222223344445556665555555554431 122334444445555677777777777665
Q ss_pred CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 590 LPDLKTYSVLI-HGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 590 ~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.|+-...|..+ -+|.+..-++-+.++++-.+.. .+.++...+..+....+.=+-..|.+-...+...+-. . | .
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~ 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-P 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-h
Confidence 34444555433 3556666677777777666654 2224445555544444432323333334444333211 1 1 1
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 669 LIDGLCKS-----GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 669 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
.+.-+++. .+-+.|++++-.+... -|. .-..|+--|.++++..+|..+.+++.- ..|-..+...+..+-
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 22233333 2346677777666653 232 223345557788889999888887653 234333333333221
Q ss_pred -----HhcCCHHHHHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001797 744 -----CRDGNMEKALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAG 816 (1012)
Q Consensus 744 -----~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 816 (1012)
.......-|...|..+-+.+...+ .....++..+.-..++++.+..++.+...-. .|...-..++.+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHhc
Confidence 111123345555544433333221 3344455555555556666665555544322 22222234555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChhHHHHHH
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYT-SLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~ 860 (1012)
++.+|+++|-++....++ |..+|. .|.++|.+.+.++-|++++
T Consensus 408 ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 666666665544321111 223333 3445555555555554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-11 Score=119.77 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=215.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 001797 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 682 (1012)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 56778888888888875332 556667788888889999999999998887521111 23455677788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF----VYCTLVDGCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~ 758 (1012)
.++|..+.+.+. --......|+..|-...+|++|++.-+++.+.+-.+..+ .|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999987532 234566778899999999999999999888765554433 467777777778899999999999
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
+.+.+|....+-..+++.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+....++
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-- 283 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-- 283 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--
Confidence 999999999888899999999999999999999998864333445677888899999999999999988887433333
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK---EGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 901 (1012)
.-..+...-....-.++|..++.+-+. -.|+...+..+++.... .|...+...+++.|...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333444443444445666666666554 57888777777765432 34566666777777655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-11 Score=122.59 Aligned_cols=288 Identities=11% Similarity=0.134 Sum_probs=235.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
.|++.+|+++..+-.+.+-.| ...|..-+.+--+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999998877765443 4456666677778999999999999988753344555677777788889999999999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV-------TYTILIDYHCKAGTMKDAEHLLVEM 828 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 828 (1012)
...+.+..|.++.+.....++|.+.|++.+...++.++.+.+.-.+.. +|..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999999999999999999999999999999999999999988766554 5666666555555555555566665
Q ss_pred HHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 829 QKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 829 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
... ..-++..-.+++.-+...|+.++|.++..+.++.+.+|. ...++ ...+-++.+.=++..++..+.. |.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 543 445666777888889999999999999999998777766 22222 3457788888899999988885 77889
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
.+.+|+..|.+++.|.+|.+.++.+++ ..|+..++.++...|.+.|+.++|..+++..+..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999988 78999999999999999999999999999887543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-10 Score=115.87 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=230.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCH
Q 001797 637 GFCKQGFIKEAFQLHEKMCES-GITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVT-YTTIIDGYCKSGNL 714 (1012)
Q Consensus 637 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~ 714 (1012)
+.+-.++...|.+.+-.+... -++.|+.....+...+...|+.++|...|++.... .|+..+ .....-.+.+.|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 344556666666655544433 35667888899999999999999999999988864 343322 22233445688999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 001797 715 TEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 715 ~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 794 (1012)
++...+...+... ..-....|..-+.......+++.|+.+-++.++.++.+..++..-+..+...|+.++|.-.|+...
T Consensus 283 e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 283 EQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 9999988888764 122333454445555677899999999999999999999999999999999999999999999987
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHc-cCChhHHHHHHHHHHHcCCCCC
Q 001797 795 DKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLL-HGYAG-IGKRSEMFALFDEMVERGVEPD 871 (1012)
Q Consensus 795 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 871 (1012)
. +.| +...|..|+..|...|.+.||.-+.+...+. ++.+..+...++ ..|.. ..--++|.+++++.+. +.|+
T Consensus 362 ~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~ 436 (564)
T KOG1174|consen 362 M--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI 436 (564)
T ss_pred h--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence 6 454 6789999999999999999999988877653 445666666553 33332 3345789999998885 7776
Q ss_pred H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 872 G-VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 872 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
. .....++..+...|++++++.++++.+..- +|....+.|++.+...+.+++|...|..++. ++|++..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchH
Confidence 4 455677789999999999999999999884 7999999999999999999999999999998 7887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-09 Score=111.00 Aligned_cols=380 Identities=19% Similarity=0.196 Sum_probs=205.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHE 611 (1012)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 611 (1012)
.+...|+++.|...|-+... ....+.+......+.+|+.+++.+.++.. -..-|..+.+-|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455666666655544321 12234455556677777777776665522 23345566667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 612 ALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 612 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|.++|.+.- .++-.|..|.+.|++++|.++-++.. |.+.....|..-..-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 777775422 23445667777777777777666543 333344455555555666777777777665443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHH
Q 001797 692 KGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFN 771 (1012)
Q Consensus 692 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 771 (1012)
.|+. .|..|-+.|..++.+++.++-.... -..|...+..-+...|+...|.+.|-++-+ |.
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~k 912 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FK 912 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HH
Confidence 2443 3556777777777777776643211 112455556666667777777766655432 44
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhC------------CCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADK------------HITPNHV--------TYTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
.-+++|-..+-|++|.++-+.--.. .+..+.. ....-++.-+..+-++-|..+-+-..+.
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~ 992 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD 992 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence 5556666666666666554321100 0000000 0111122223334444444443333221
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcC-ChHHHHHHH---------H
Q 001797 832 VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMV-----DAYLKEG-NMMKTIKLV---------D 896 (1012)
Q Consensus 832 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g-~~~~A~~~~---------~ 896 (1012)
-.| .....+...+...|++++|-+.|-++++. ..-..+|...+ .-+.+.| +.++|..+| +
T Consensus 993 -k~~--~vhlk~a~~ledegk~edaskhyveaikl--ntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ae 1067 (1636)
T KOG3616|consen 993 -KMG--EVHLKLAMFLEDEGKFEDASKHYVEAIKL--NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAE 1067 (1636)
T ss_pred -cCc--cchhHHhhhhhhccchhhhhHhhHHHhhc--ccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHH
Confidence 112 23344555667889999998888888752 21112222111 1123333 444444443 1
Q ss_pred HHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 897 EMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLES 967 (1012)
Q Consensus 897 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 967 (1012)
+..+...+ .-+.++..-++.-...|++.+|+.++.++. +|+ ..++.|.+.+-|.+|+++.+.
T Consensus 1068 rvae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~-----i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1068 RVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPD-----IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCc-----hHHHHHHHhccChHHHHHHHh
Confidence 22222222 124567777778888899999998887663 466 334456677888888776553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-11 Score=118.69 Aligned_cols=291 Identities=14% Similarity=0.128 Sum_probs=200.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 536 TGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEV 615 (1012)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 615 (1012)
.|++..|+++..+..+.+ +.....|..-+.+--..|+.+.+-..+.++.+....++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554443 2223344444445555566666666666555543333444455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 616 FSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI-------VTYNALIDGLCKSGELERARELFDG 688 (1012)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (1012)
+.++.+.++. .+........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665443 4455566666666666666666666666666554442 2455666655555556665667776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 689 IFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 689 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
...+ .+.+...-.+++.-+.+.|+.++|.++.++..+.+..|.. .. .-.+.+.++.+.-++..++.++..|+++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6554 3335556667788889999999999999999988777662 22 22456778888889999999999999999
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
.+..|+..|.+.+.|.+|.+.|+..++ ..|+..+|+.+.+++.+.|+.++|.+..++.+..-.+|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998887 57899999999999999999999999998876533333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-11 Score=116.75 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 001797 677 GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN---FVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~---~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..|.|+.+.+.+.++---+.. .....|..-|...|-+++|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34555555555555431 112233344555555555555555555555432111110 12333444455556666666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV----TYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.+|..+.+.+--...+...|+.+|-...+|++|++.-+++.+.+..+..+ .|.-|...+....+.+.|..++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 66666555444444555666666666666666666666665543333221 34444444555566666666666666
Q ss_pred HCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 001797 830 KRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV 909 (1012)
Q Consensus 830 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 909 (1012)
+.. +.....-..+++.....|+++.|++.++.+.+.+..--+.+...|..+|...|+.++...++.++.+.. +....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccH
Confidence 531 223334445566666677777777777766653322234555566667777777777777777666654 34444
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 001797 910 YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV---YEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~---~~~g~~~~A~~~~~~~~~ 970 (1012)
-..+........-.+.|...+.+-+. -+|+.-..+-++..- ...|++.+....+.+|..
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44555444444444455444444333 256666666666552 244556666666666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=123.23 Aligned_cols=235 Identities=9% Similarity=-0.010 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc
Q 001797 701 YTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS 780 (1012)
Q Consensus 701 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 780 (1012)
-+.+..+|.+.|.+.+|.+.++...+. .|-..||..|-.+|.+..+...|+.++.+.++..|.+.......++++...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356778888888888888888887774 555667778888888888888888888888888888877778888888889
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHH
Q 001797 781 QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 860 (1012)
++.++|.++|+...+.. +.+.+...++...|.-.++.+-|+.+|+++++.|. .++..|+.++-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988752 34566777777888889999999999999999875 47788999999999999999999999
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCC
Q 001797 861 DEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEI 938 (1012)
Q Consensus 861 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 938 (1012)
..++..-..|+ ..+|++++......|++.-|.+.|+-++..+ +.+...++.|+-.-.+.|++++|..++..+.. .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 99987544454 4789999999999999999999999999886 66789999999999999999999999998876 5
Q ss_pred CCCH
Q 001797 939 KLSH 942 (1012)
Q Consensus 939 ~p~~ 942 (1012)
.|+-
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 6653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-11 Score=138.42 Aligned_cols=247 Identities=15% Similarity=0.087 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 714 LTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCC---------RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 714 ~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
+++|..++++.++. .|+. ..|..+..++. ..+++++|...++++++.+|.+..++..++.++...|++
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 45666666666653 4433 23444443332 234578888888888888888888888888888888899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChhHHHHHHHH
Q 001797 784 FEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
++|...++++++.+ +.+...+..++..+...|++++|+..++++.+. .|+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999998888742 334567778888888889999999999888863 4433 2333445556678888999998888
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhC-CCCC
Q 001797 863 MVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK-EIKL 940 (1012)
Q Consensus 863 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 940 (1012)
+++.. .| ++..+..++.+|...|++++|...++++.... +.+......++..|+..|+ +|...++++.+. +..|
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhh
Confidence 87532 34 44556777888888999999999988876663 4456667777777888774 777767766542 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 941 SHATCCILISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 941 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
.++.. .-.-+.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 22225566777777777 7777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-11 Score=138.10 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc---------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 747 GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS---------QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 747 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
+++++|+..|+++++.+|....++..++.+|... +++++|...++++++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3568999999999999999998888888776533 45899999999999852 3367788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMKTIKLVD 896 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 896 (1012)
+++|+..|+++.+.+ +.+...+..++..+...|++++|...++++++ +.|+. ..+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999852 33566888899999999999999999999997 56643 334445556777899999999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 897 EMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 897 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+++....|.++..+..++.++...|++++|...+.++.. ..|+.......+.. |...| ++|...++.+++
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998875345677889999999999999999999999876 46776666666655 56666 588888888777
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=118.89 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+..++..+...|++++|.+.++++++....| ....+..++.++...|++++|...++++.... |.+...+..++.++.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 3333444444444444444444443311111 22333344444444455555555554444443 233444444455555
Q ss_pred ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 001797 919 KEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESM 968 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~ 968 (1012)
..|++++|.+.++++.+. .|+++...+.... +...|+.++|..+.+.+
T Consensus 181 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555544442 2333222222222 33445555555444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=119.79 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY 811 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 811 (1012)
....+..+...+...|++++|.+.++++++..|.....+..++..|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345788888999999999999999999999999888999999999999999999999999998853 4456788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChH
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMM 889 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 889 (1012)
+...|++++|...++++......+ ....+..++..+...|++++|...+.++++. .| +...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998743222 4456778889999999999999999999873 44 5677888999999999999
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 890 KTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 890 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|...++++.... +.++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999883 66788888899999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-08 Score=98.23 Aligned_cols=398 Identities=14% Similarity=0.066 Sum_probs=260.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 557 NDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRC-GKIHEALEVFSELQDKGLVPDVITYSSLI 635 (1012)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li 635 (1012)
+...-...+.+|-..++-++|+.......... .....+.++.-+.+. ++-.++.--+.+.+..- + .... .|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p---~aL~-~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-P---MALQ-VI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-c---hHHH-HH
Confidence 34444556777778888888887766554331 112233333333332 33223333333333221 1 1111 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALID--GLCKSGELERARELFDGIFAK-GLTPTVVTYTTIIDGYCKSG 712 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g 712 (1012)
.+..+.+ +..+...-..|.....+|+..+...-+. +.+-.++...|...+-.+... -++-|+.....+.+.+...|
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2222211 0011111112222233444333333333 344455555555555444433 35557778889999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 713 NLTEAFQLVNEMPSRGVTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 713 ~~~~A~~l~~~~~~~~~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
+.++|+..|++... +.|+..+ .....-.+.+.|++++-..+...+..........|..-+......++++.|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999876 4565543 22233345678899998888888887765555667777777788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 001797 792 DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP 870 (1012)
Q Consensus 792 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 870 (1012)
+.++.. +.+...|..-...+...|+.++|.-.|+.++. +.| +...|..|+++|...|++.||.-..+..... +..
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 988742 23455666666778899999999999999886 454 7789999999999999999999888877752 333
Q ss_pred CHHHHHHHH-HHH-HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 871 DGVIYSMMV-DAY-LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 871 ~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+..+...++ ..+ ....-.++|.+++++.+... |.-..+-+.++..+...|.++++++++++.+. ..|+..-...+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L 477 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL 477 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH
Confidence 555554443 222 33445789999999999886 43456677888999999999999999999987 67776665555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 949 ISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 949 l~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
..-+..++.+.+|...|...++..
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Confidence 555888999999999999988854
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-08 Score=102.99 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC--CRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 787 (1012)
.+..+.+.++...... ..|... +..++..+ ++......+.+++....+..|... .+...++.....+|+++.|+
T Consensus 320 tnk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hhhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555443 233333 23333332 222246677777777777777664 67777888888888888888
Q ss_pred HHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHHHHH----HHHHHHccCCh
Q 001797 788 KLLE--------DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR--VLKPNFRTYTS----LLHGYAGIGKR 853 (1012)
Q Consensus 788 ~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~----l~~~~~~~g~~ 853 (1012)
+++. .+.+.+..|..+ ..+...+.+.++.+-|..++.+.... ...+....... ++..-.+.|+-
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 8888 555544444444 45555666777666666666665431 11222222232 33333456888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 854 SEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM 898 (1012)
Q Consensus 854 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 898 (1012)
++|..+++++++. ..+|..+...++.+|+.. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 8888888888863 234677777777777665 567777665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-08 Score=104.62 Aligned_cols=562 Identities=14% Similarity=0.125 Sum_probs=290.6
Q ss_pred CCHhHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------C
Q 001797 311 PNEVVYTTLING--FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRL-G--------I 379 (1012)
Q Consensus 311 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~ 379 (1012)
-|..|--.+++. |...|++++|.+-.+-.. +...|..|..++.+..++|-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 466677666654 667889999888777655 4467888888888888888888777766532 1 0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
.|+ .+=....-.....|.+++|..+|++.+..+ .|-..|-..|.+++|.++-+.=-... -..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 111112222345566666666666655432 23344555666666666654322111 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
..-+-..++.+.|++.|++.... --.....|. .+......+.+.+ .|...|.-....+-..|++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccch
Confidence 55555566666666666643211 111111110 0111111111111 1334444455555567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 540 QAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619 (1012)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 619 (1012)
+.|+.+|....+ |-+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888877654 566777777888888887775542 25566667788888888888888888765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHH----------------HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001797 620 QDKGLVPDVITYSSLISGFCKQGFIKE----------------AFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAR 683 (1012)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~----------------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 683 (1012)
.. +...|+. |+.+++++ |-..|++. |.. ...-+..|-+.|.+.+|+
T Consensus 994 qa---------fsnAIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 994 QA---------FSNAIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHH
Confidence 53 2233332 22222222 22222221 100 112233455666666665
Q ss_pred HHHHH--------HHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 684 ELFDG--------IFAKG--LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 684 ~~~~~--------~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++--+ ++.+. ...|....+.-.+.++...++++|..++-...+ |...+..| +..+..--.
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vte 1125 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTE 1125 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhH
Confidence 54221 11121 223445555566667777777777777665543 22223333 333333333
Q ss_pred HHHHHHHHc--C-CCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH------
Q 001797 754 SLFLEMVQK--G-LAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDA------ 821 (1012)
Q Consensus 754 ~~~~~~~~~--~-~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A------ 821 (1012)
++-+.|.-. + |+.. ..+..++..+.++|.+..|.+-|.+.-++ ...+.++.+.|+.++-
T Consensus 1126 e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~ 1196 (1416)
T KOG3617|consen 1126 EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANT 1196 (1416)
T ss_pred HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeec
Confidence 444433211 1 1111 56677888888999988888877765332 1334555666665432
Q ss_pred ----------HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 001797 822 ----------EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKT 891 (1012)
Q Consensus 822 ----------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 891 (1012)
-.+++.+ ....++.+...++..|-+..-++---.+|..... + ..+.+..+..+ .|-.++|
T Consensus 1197 sRqkEiYImAANyLQtl---DWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq--i--Eiee~q~ydKa---~gAl~eA 1266 (1416)
T KOG3617|consen 1197 SRQKEIYIMAANYLQTL---DWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ--I--EIEELQTYDKA---MGALEEA 1266 (1416)
T ss_pred cccceeeeehhhhhhhc---ccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH--h--hHHHHhhhhHH---hHHHHHH
Confidence 2222221 2344555554444444443333333333333221 1 11122222221 2344555
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhcc-----------ccHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcC
Q 001797 892 IKLVDEMFLRGLVLNQNVYTSLANSLCKE-----------EEFYKVLKLLDEMGDKEIKLSHA----TCCILISSVYEAG 956 (1012)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~g 956 (1012)
.+.+.++..++ .....+..|-.-..+- .+..+.++...-|++.-..|+.. .+-.++..+....
T Consensus 1267 ~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k 1344 (1416)
T KOG3617|consen 1267 AKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRK 1344 (1416)
T ss_pred HHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhh
Confidence 55555555543 2233333332221111 24555555555565432222221 3334566678889
Q ss_pred CHHHHHHHHHHHHHC
Q 001797 957 NIDKATRFLESMIKF 971 (1012)
Q Consensus 957 ~~~~A~~~~~~~~~~ 971 (1012)
+|..|.+.++.|.+.
T Consensus 1345 ~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1345 NYKPAYRALTELQKK 1359 (1416)
T ss_pred hccHHHHHHHHHhhc
Confidence 999999999999884
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-10 Score=121.06 Aligned_cols=234 Identities=19% Similarity=0.179 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch
Q 001797 700 TYTTIIDGYCKSGNLTEAFQLVNEMPSR-----G-VTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQK-----GLAST 767 (1012)
Q Consensus 700 ~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~-~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 767 (1012)
+...+...|...|++++|+.+++..++. | ..|...+ .+.+...|...+++.+|..+|++++.. |...+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555556666555555554432 1 0122221 223445555556666666666655432 22222
Q ss_pred ---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 001797 768 ---SSFNALLNGLCKSQKIFEANKLLEDMADK-----HIT-PNH-VTYTILIDYHCKAGTMKDAEHLLVEMQKR---VLK 834 (1012)
Q Consensus 768 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 834 (1012)
.+++.|+..|++.|++++|..++++..+- +.. |.. ..++.++..++..+++++|..++++..+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 44555555555555555555555444320 111 111 13444555555566666666665554331 111
Q ss_pred CCh----HHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 001797 835 PNF----RTYTSLLHGYAGIGKRSEMFALFDEMVER-----G-VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-- 901 (1012)
Q Consensus 835 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 901 (1012)
++. .+++.|...|..+|++++|.+++++++.. + ..+ ....++.|+..|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 211 24555555555556666665555555531 0 111 1233445555555555555555555443322
Q ss_pred --C--CccCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 001797 902 --G--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 902 --~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 933 (1012)
| .|....+|..|+..|...|++++|+++.+.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112344555555555555555555554444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-10 Score=110.51 Aligned_cols=229 Identities=17% Similarity=0.099 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ 641 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 641 (1012)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+-++.- +-|+....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45667777777777777777777765 4556667777777777777777777777776652 22444445566667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001797 642 GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLV 721 (1012)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 721 (1012)
++.++|.++++...+.. +.++.....+...|.-.++.+-|+.+|.++++.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777777653 345666666666777777777777777777777655 5566666666666777777777777
Q ss_pred HHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 722 NEMPSRGVTPDNF--VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 722 ~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
++....--.|+.. +|..+.......|++..|...|+-++..+++...+++.|+-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7766543344433 5666666666777777777777777777777777777777777777777777777776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-10 Score=121.32 Aligned_cols=237 Identities=20% Similarity=0.178 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CC
Q 001797 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQK-----G---LASTSSFNALLNGLCKSQKIFEANKLLEDMADK-----H-IT 799 (1012)
Q Consensus 734 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 799 (1012)
.+...+...|...|+++.|..+++.+++. | +.-....+.++..|...+++.+|..+|++++.- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36667899999999999999999999876 2 222256667999999999999999999998752 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--C-CCCChH-HHHHHHHHHHccCChhHHHHHHHHHHHc---CC
Q 001797 800 PN-HVTYTILIDYHCKAGTMKDAEHLLVEMQK---R--V-LKPNFR-TYTSLLHGYAGIGKRSEMFALFDEMVER---GV 868 (1012)
Q Consensus 800 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 868 (1012)
|. ..+++.|..+|.+.|++++|..+++++.+ . + ..|... .++.++..++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 24788899999999999999999988754 1 1 222222 4567788899999999999999988761 12
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CccCHHHHHHHHHHHhccccHHHHHHHHHHHhh--
Q 001797 869 EPD----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG-------LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD-- 935 (1012)
Q Consensus 869 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 935 (1012)
.++ ..++..|+..|...|++++|.+++++++.+. .......++.|+..|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 232 3678899999999999999999999998863 122356788899999999999999998888532
Q ss_pred CCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 936 KEIKLSHAT----CCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 936 ~g~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
+.+.|+.++ +..|...|..+|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 113454433 33344448899999999999999886
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-07 Score=99.83 Aligned_cols=257 Identities=12% Similarity=0.079 Sum_probs=149.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHH
Q 001797 201 LLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT 280 (1012)
Q Consensus 201 l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 280 (1012)
|+..|+.+.|.+-.+-+. +...|..|.+.|.+..+++-|.-.+..|..- ...+.+++..+.|-. +.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a-----RgaRAlR~a~q~~~e-~e-- 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-----RGARALRRAQQNGEE-DE-- 803 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-----hhHHHHHHHHhCCcc-hh--
Confidence 334455555554444332 3345666666666666666666655555432 112222333333221 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICK 360 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (1012)
......-...|.+++|+.+|.+... |..|=..|-..|.+++|+++-+.--+. .=..||..-..-+-.
T Consensus 804 -akvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 804 -AKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEA 870 (1416)
T ss_pred -hHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHh
Confidence 1111222356888899888888765 334555566788888888877653332 223456555555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 361 AGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRV 440 (1012)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 440 (1012)
.++.+.|++.|++.-. |--..+..|. .++.....+.+++ .|...|.--...+-..|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHH
Confidence 7888888888887431 1111111111 1111222222222 2445566666666778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001797 441 FEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMT 515 (1012)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 515 (1012)
|..... |.++++..|-+|+.++|-++-++-. |......|...|-..|++.+|...|.+..
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 877653 6677888888888888888876543 55666678888888888888888887654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-07 Score=100.97 Aligned_cols=452 Identities=15% Similarity=0.134 Sum_probs=222.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHHHH--h
Q 001797 285 VDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNAL--IGGIC--K 360 (1012)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--i~~~~--~ 360 (1012)
++.+.+.|++++|.+...+++..+ +.+...+..-+.++.+.++|++|+.+.+.-.. ..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 455667888888888888888765 66677788888888888888888855543221 1122222 33444 7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHH
Q 001797 361 AGEIEKAKGLMTEMLRLGINPDT-QTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT--CNVIINGLCRCSDLEGA 437 (1012)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A 437 (1012)
.++.|+|...++ |+.++. .+...-...+.+.|++++|+++|+.+.+.+ .++... -..++.. + .+
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~----~---a~ 158 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAV----A---AA 158 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH----H---Hh
Confidence 888888888887 333433 355555677788888888888888888776 232211 1111111 0 01
Q ss_pred HHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCC-------CCC--CH-----HHHHHHHHHHHh
Q 001797 438 CRVFEEMIACGLKPNNFVYT---TLIQAHLRQNRFEEAINILKGMTGKG-------VLP--DV-----FCYNSLISGLCK 500 (1012)
Q Consensus 438 ~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~li~~~~~ 500 (1012)
... ..+......|+ .+|. .....++..|++.+|+++++.....+ -.. +. ..--.|...+..
T Consensus 159 l~~-~~~q~v~~v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 01222112222 2222 23344556788888888887763211 000 00 011223344556
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchhh----HHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001797 501 AKKMEDARSCLVEMTANGLKPNLYT----YGAFIREYTKTGNMQ--AADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNV 574 (1012)
Q Consensus 501 ~g~~~~A~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 574 (1012)
.|+.++|..++...+...+. |... -|.|+.. ..-.++- .++..++.... ...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~--------------------~l~ 294 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVF--------------------KLA 294 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHH--------------------HhH
Confidence 77777777777777766433 3321 1122111 1111110 01111111100 000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 001797 575 KEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF-CKQGFIKEAFQLHEK 653 (1012)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 653 (1012)
+.....+..-... ....-+.++..| .+..+.+.++...+... .|....-+.+..+. ++...+..+..++..
T Consensus 295 ~~~l~~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1111111110000 111112222222 23334444444333222 22222222222221 222245666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 001797 654 MCESGITPNIVTYNALIDGLCKSGELERARELFD--------GIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 725 (1012)
.-+........+...++......|+++.|.+++. .+.+.+..|..+. .+...+.+.++-+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHH
Confidence 5554333334455556666666777777777666 5554444454433 34455555555554555544433
Q ss_pred hC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 726 SR--GVTPD----NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 726 ~~--~~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
.. .-.+. ..++..++..-.+.|+.++|..+++++.+.+|.+..+...++.+|++. +.+.|..+-.
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 21 00111 113333333444567777777777777777777777777777777654 4555554433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-10 Score=102.80 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 814 (1012)
+...|.-+|...|++..|..-++++++.+|....++..++..|.+.|..+.|.+.|++.+... +.+....|+....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 345556666777777777777777777777766777777777777777777777777766631 2234456666666677
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
.|++++|...|++......-+ -..+|..++.+..+.|+.+.|.+.|++.++ ..| .+.....+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777776666532222 233566666666666777777777766665 333 3344555666666667777777
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+++.....+ +++.......+.+-...|+-+.|.++=.++.+ ..|....
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEE 242 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHH
Confidence 6666666665 35666666666666666666666666655555 4454443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-08 Score=103.96 Aligned_cols=439 Identities=16% Similarity=0.104 Sum_probs=264.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHhcCC
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPN-LYTYGAFIREYTKTGN 538 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~ 538 (1012)
.++.+..|+++.|+..|.+.+...+. +.+.|+.-..+|...|++++|++--.+-.+. .|+ .-.|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 34566788888888888887776654 7778888888888888888887766665553 343 4467777777777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 001797 539 MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG-KIHEALEVFS 617 (1012)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 617 (1012)
+++|..-|.+-++.. +.|...++.+.+++. .+.+. +. ...++..|..+..--...+ ..+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888888888887764 556666777766661 11111 10 0112233322221100000 0111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHCC-------CCCChhhHHHHHHHHHhcCC-HHHHHH
Q 001797 618 ELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHE-----KMCESG-------ITPNIVTYNALIDGLCKSGE-LERARE 684 (1012)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~-------~~~~~~~~~~l~~~~~~~g~-~~~A~~ 684 (1012)
+....+ |+. +..+..-.....|...+. .+...+ ..|.. ......-..++ .++..
T Consensus 153 ~~~~~~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~- 219 (539)
T KOG0548|consen 153 EIIQKN--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR- 219 (539)
T ss_pred HHhhcC--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHHHH-
Confidence 111111 111 001111000111111100 000011 11110 00000000000 00000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
. ..-..-...+.+...+..+++.|++.+....+.. .+..-++....+|...|.+.+.+......++.|.
T Consensus 220 -----~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 220 -----V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred -----H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 0 0011223456666667778888888888877642 3444456666678888888888888887777776
Q ss_pred CchhhHH-------HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 765 ASTSSFN-------ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 765 ~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
....-++ .++..|.+.++++.++..|.+.+.....|+.. .+....+++........- +.|..
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~ 357 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEK 357 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhH
Confidence 5443333 35556777888999999999987755444332 233445556655544432 33433
Q ss_pred H-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 001797 838 R-TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 838 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
. -...-++.+.+.|++.+|+..|.+++.. .| |...|.+.+-+|.+.|.+..|++-.+..++.. |+....|..-+.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 2 2233478889999999999999999984 35 77889999999999999999999999999997 667888999999
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYE 954 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 954 (1012)
++....+|++|.+.|.+.++ ..|++.-+...+..+..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 99999999999999999988 67887777666666444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-09 Score=114.48 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=65.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
.+...|...|++++|+++++++++ ..|+ ++.|..-+..|-..|++.+|.+.++.+...+ ..|..+-...+..+.++
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 344445555666666666666554 3342 4455555556666666666666666665554 23444444455555566
Q ss_pred ccHHHHHHHHHHHhhCCCCCCH-----HHHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 001797 921 EEFYKVLKLLDEMGDKEIKLSH-----ATCCILISS---VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~g~~p~~-----~~~~~ll~~---~~~~g~~~~A~~~~~~~~~ 970 (1012)
|++++|++........+..|.. ...|+.+.. |.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666665555443322211 122222211 5555666666655555555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-08 Score=97.40 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=148.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhc
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVT-YNALIDGLCKS 676 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 676 (1012)
-+...+...|++.+|+..|...++.++. +..++..-...|...|+...|+.-+.+.++. .||-.. -..-...+.++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 3444455555566666655555543111 1122222233455556656666556555553 444221 11223345566
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HH----------HH--HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 677 GELERARELFDGIFAKGLTPT--VV----------TY--TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p~--~~----------~~--~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
|.++.|..-|+.++......+ .. .| ...+..+...|+...|+.+...+++. .+-|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHH
Confidence 666666666666655421100 00 11 11222344567777777777777763 22244556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH----HHHH---------H
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT----YTIL---------I 809 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l---------~ 809 (1012)
|...|.+..|+.-++.+-+...+++..+..+...+...|+.+.++...++.++ +.||... |..+ +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777667777777777777777777777777777766 4555532 1111 0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001797 810 DYHCKAGTMKDAEHLLVEMQKRVLKPNFR---TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKE 885 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 885 (1012)
......+++.++++-.++..+........ .+..+-.++...|++.+|+..-.++++ +.|| ..++.--+.+|...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhh
Confidence 11223344444444444444321110111 122333444444555555555555443 3332 44444444555555
Q ss_pred CChHHHHHHHHHHHHc
Q 001797 886 GNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 886 g~~~~A~~~~~~~~~~ 901 (1012)
..+++|+.-|+.+.+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-09 Score=112.43 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHhhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRG-VTPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~-~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+++++..|..+.+|+.++..+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34566666666666431 1222 23566667777778888888888888888888777888888888888888888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 789 LLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 789 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.|++.++. .| +..+|..++..+...|++++|.+.+++..+. .|+..........+...+++++|...+++....
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 88888763 44 3556777777777888888888888877763 343221111122234566788888888665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C---CccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-
Q 001797 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR---G---LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL- 940 (1012)
Q Consensus 868 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 940 (1012)
..|+... ........|+..++ +.++.+.+. . .+....+|..++..+...|++++|+..|+++.+ ..|
T Consensus 195 ~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~ 268 (296)
T PRK11189 195 LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--NNVY 268 (296)
T ss_pred CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCc
Confidence 2333222 12333345555444 234333321 1 022346788888888888888888888888877 444
Q ss_pred CHHHHHHHH
Q 001797 941 SHATCCILI 949 (1012)
Q Consensus 941 ~~~~~~~ll 949 (1012)
+...+...+
T Consensus 269 ~~~e~~~~~ 277 (296)
T PRK11189 269 NFVEHRYAL 277 (296)
T ss_pred hHHHHHHHH
Confidence 444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-09 Score=98.70 Aligned_cols=211 Identities=12% Similarity=0.055 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGY 847 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 847 (1012)
.+...|+-.|...|++..|.+-+++.++. -+.+..+|..+...|-+.|+.+.|.+.|++.++. -+.+..+.|..+..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHH
Confidence 45677899999999999999999999985 2335669999999999999999999999999974 233667899999999
Q ss_pred HccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 848 AGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 848 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
|..|++++|...|++++....-| -..+|.+++.+-.+.|+++.|.+.+++.+... |..+.....++....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999999743333 34789999999999999999999999999997 66788899999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhh
Q 001797 927 LKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLV 984 (1012)
Q Consensus 927 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 984 (1012)
...++.....| .++....+..++--...|+-+.|.++=..+.+. -|.+-.+-.|.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f~ 247 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTFL 247 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhHh
Confidence 99999998765 466666655555556789998888876666553 36666655554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-08 Score=104.77 Aligned_cols=434 Identities=12% Similarity=0.098 Sum_probs=256.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 001797 495 ISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN-DIIYTTLIDGHCKEGN 573 (1012)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 573 (1012)
..+.+..|+++.|..+|.+.+...+. +.+.|..-..+|.+.|++++|.+=-.+.++. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 34556777888888887777765443 6677777777777777777777666665554 343 5667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 001797 574 VKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQG-FIKEAFQLHE 652 (1012)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 652 (1012)
+++|+.-|.+-++.. +.+...++.+..++ ..+.+. +. ...++..|..+..--...+ ..+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 777777777776652 33455555555554 111111 10 0112222222221100000 0011111111
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHH
Q 001797 653 KMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF-----AKGLTPTVVTYTTIIDGYCKSGNLT----EAFQLVNE 723 (1012)
Q Consensus 653 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~~~ 723 (1012)
+.+..+ +.+.. .|.+-.++..|.-.+.... ..+..+. .....+. .......+
T Consensus 153 ~~~~~~-p~~l~-------~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-----------~~~~~p~~~~~~~~~~~~d 213 (539)
T KOG0548|consen 153 EIIQKN-PTSLK-------LYLNDPRLMKADGQLKGVDELLFYASGIEIL-----------ASMAEPCKQEHNGFPIIED 213 (539)
T ss_pred HHhhcC-cHhhh-------cccccHHHHHHHHHHhcCccccccccccccC-----------CCCCCcccccCCCCCccch
Confidence 111111 10111 1111111111111111110 0000000 0000000 00000000
Q ss_pred hhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 001797 724 MPSR-GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH 802 (1012)
Q Consensus 724 ~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 802 (1012)
+.+. ...--..-...++++..+..+++.|++.+...++.. ....-++..+.+|...|.+.+....-+...+.|.. ..
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~r 291 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LR 291 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HH
Confidence 0000 000011234567777788889999999999999998 66678888899999999988887777666655422 11
Q ss_pred H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-H
Q 001797 803 V-------TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGV-I 874 (1012)
Q Consensus 803 ~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~ 874 (1012)
. .+..+..+|.+.++++.|+.+|.+.+..-..|+. ..+....+++.+..+...- +.|+.. -
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e 360 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEE 360 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHH
Confidence 1 2223445667788999999999987653233322 2233445566655554442 455442 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VY 953 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~ 953 (1012)
...-+..+++.|++.+|++.|.+++.+. |.|...|...+.+|.+.|++..|++-.+..++ +.|+....|.--+. +.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence 3344788999999999999999999998 88999999999999999999999999999988 78988877776655 77
Q ss_pred hcCCHHHHHHHHHHHHHCCCccChhHHH
Q 001797 954 EAGNIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 954 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
...+|++|.+.|+..++.. |....+.
T Consensus 438 ~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 7899999999999999976 6555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-09 Score=110.02 Aligned_cols=218 Identities=15% Similarity=0.025 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 677 GELERARELFDGIFAKG-LTPT--VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
+..+.++.-+.+++... ..|+ ...|..+...|...|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777531 1222 3456777778888899999998888888752 335668888888889999999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
..|+++++..|....++..++.++...|++++|.+.+++..+. .|+..............++.++|...|.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9999999988888888888999999999999999999998874 444332222222334567899999999765543 2
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 834 KPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-G----VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 834 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.|+...+ .......|+..++ ..++.+.+. . +.| ....|..++..+.+.|++++|+..|+++++.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 2233345666554 345555431 1 112 23678899999999999999999999999887
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-07 Score=101.90 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ 641 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 641 (1012)
.-+...|...|++++|++.+++.++.. |..+..|..-...+-+.|++.+|.+.++.....+.. |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 444556666677777777777666652 223556666666667777777777777766665433 555555556666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 642 GFIKEAFQLHEKMCESGITPNI--------VTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|+.++|.+++....+.+..|-. ......+.+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777666555432211 1123445667777777777777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-11 Score=87.78 Aligned_cols=49 Identities=37% Similarity=0.764 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 001797 276 PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFM 324 (1012)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 324 (1012)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666665555666666666665555
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-11 Score=86.84 Aligned_cols=49 Identities=49% Similarity=0.887 Sum_probs=28.2
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 001797 311 PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGIC 359 (1012)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (1012)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-06 Score=87.09 Aligned_cols=364 Identities=12% Similarity=0.111 Sum_probs=189.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCC
Q 001797 530 IREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTY-SVLIHGLSRCGK 608 (1012)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~ 608 (1012)
...+...|++..|+.-|...++.+ +.+-.++-.-...|...|+...|+.-+.+.++. .||-..- -.-...+.++|+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 333444444444544444444321 112222222333444455555555555544443 3332111 111233445555
Q ss_pred HHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001797 609 IHEALEVFSELQDKGLVPD--------------VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLC 674 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 674 (1012)
++.|..-|+.+++..+... .......+..+...|+...|+.....+++. .+.|...+..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHH
Confidence 5555555555554422110 001122233445566777777777777665 3556666666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
..|++..|+.-++...... ..+..+..-+-..+...|+.+.++..+++.++ +.||....... |-+ ..+..+
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YKk---lkKv~K 271 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YKK---LKKVVK 271 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HHH---HHHHHH
Confidence 7777777766666554432 22444444555666667777777777776665 45655422111 101 111111
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT---YTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
.++.| ......++|.++++..+..++.......+. +..+-.++...|++.+|++.-.+.++
T Consensus 272 ~les~---------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 272 SLESA---------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred HHHHH---------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 12111 112346677777777777776432212222 23344556677888888888888775
Q ss_pred CCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 001797 832 VLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVY 910 (1012)
Q Consensus 832 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 910 (1012)
+.| |..++.--..+|.-...|++|+.-|+.+.+ +.++..-. +.| .+.|.++.++.-++ ..|
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~--------reG-le~Akrlkkqs~kR------DYY 397 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRA--------REG-LERAKRLKKQSGKR------DYY 397 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHH--------HHH-HHHHHHHHHHhccc------hHH
Confidence 455 466777778888888888888888888876 44433211 111 23444444333322 234
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
..|+ -.+.-...+-.+.|.++..+ ..|++.
T Consensus 398 KILG--VkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 398 KILG--VKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred HHhh--hcccccHHHHHHHHHHHHHh-cCCccc
Confidence 4442 34455566777778777654 677653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-07 Score=90.28 Aligned_cols=317 Identities=16% Similarity=0.121 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHH-HHHH
Q 001797 454 FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGA-FIRE 532 (1012)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~ 532 (1012)
--+++.+.-+++..+++.|++++..-.+..+. +....+.|..+|....++..|..+++++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 34666777778889999999999888777433 6677888888899999999999999988764 344444432 3456
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 533 YTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLID--GHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
+.+.+.+..|+.+...|.+. ++...-..-+. .....+++-.+..+.++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 67788888888888887652 22221111111 2334567777777777665432 4445555555667788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTY----NALIDGLCKSGELERARELF 686 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~ 686 (1012)
+|.+-|....+-+--.....|+..+ +..+.++++.|++...+++++|++..+..- +..+++-. -|+. ..+-
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHH
Confidence 8888888776654333445565444 445667788888888888877765332211 11111000 0100 0000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 687 DGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 687 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
... -+..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- ..+++-+..+-+.-+++.+|-
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC
Confidence 000 1123333344567889999999999888643 2344677765553322 345566677777777888888
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLED 792 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 792 (1012)
|..++..+.-.||+..-++-|..++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 889999999999999888888887765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-08 Score=93.42 Aligned_cols=195 Identities=16% Similarity=0.135 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 001797 526 YGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSV-LIHGLS 604 (1012)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 604 (1012)
+.+.+..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4445555566677777777777766654 346667777777888888888888888877654 344444432 345667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLIS--GFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 682 (1012)
+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++.-.. .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 778888888888777653 22221111111 234566777777777765432 2445555556666788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVT 730 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 730 (1012)
.+-|+...+-+--.....|+.-+. ..+.|+++.|+++..+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 888888776532334456665443 44677888888888888777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-07 Score=101.36 Aligned_cols=197 Identities=12% Similarity=0.032 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGI-TPNI-VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIID 706 (1012)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 706 (1012)
..+..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.++++.+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3445555555555666665555555443321 1111 111122333455666666666666666542 222223321 11
Q ss_pred HHH----HcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 707 GYC----KSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 707 ~~~----~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
.+. ..+..+.+.+.+.... ...|+. .....+...+...|++++|...++++++..|.+...+..++.+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 111 1233344444333311 122222 233344445556666666666666666666665555666666666666
Q ss_pred cHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHIT-PNH--VTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
++++|...+++..+.... |+. ..|..+...+...|++++|..+++++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666666665543111 111 123345555556666666666665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-09 Score=110.27 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=181.4
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++.++.+|.+..+...|+-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888889988888888762 335558888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHHHHccCChhHH
Q 001797 787 NKLLEDMADKHITPNHVTYTILI---------DYHCKAGTMKDAEHLLVEMQ-KRVLKPNFRTYTSLLHGYAGIGKRSEM 856 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 856 (1012)
++.++.-+....+ .. |..-. ..+..........++|-++. +.+..+|+.+...|+-.|.-.|++++|
T Consensus 373 l~~L~~Wi~~~p~--y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--YV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--ch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9998888664211 00 00000 01111122334445555544 345557888888898889999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 857 FALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+..|+.++. ++| |...|+.|+-.+....+.++|+..|+++++.. |.=..++..|+..|...|.|.+|.+.+-.++.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999985 677 66789999988888889999999999999985 33467788899999999999999998888764
Q ss_pred ---CCCCCC-----HHHHHHHHHH-HHhcCCHHHHHHH
Q 001797 936 ---KEIKLS-----HATCCILISS-VYEAGNIDKATRF 964 (1012)
Q Consensus 936 ---~g~~p~-----~~~~~~ll~~-~~~~g~~~~A~~~ 964 (1012)
++..+. +...|..++. +...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 111111 1234444444 5666666655443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-09 Score=110.41 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=181.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 820 (1012)
-+.+.|++.+|.-.|+.+++++|....+|..|+......++-..|+..+.+.++. .| +......|+-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 3568899999999999999999999999999999999999999999999999984 45 66788889999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHH-----------HHHHccCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCh
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLL-----------HGYAGIGKRSEMFALFDEMVE-RGVEPDGVIYSMMVDAYLKEGNM 888 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 888 (1012)
|+..+++.+... |.. ..+. .............++|-++.. .+..+|+.+...|+-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999999987532 110 0000 011111223344556655554 55567889999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLES 967 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~ 967 (1012)
++|++.|+.++... |.|...|+.|+..+.-..+.++|+..|.++++ +.|.....++.++- +...|.++||.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999997 78899999999999999999999999999999 89998877776666 8899999999999988
Q ss_pred HHH
Q 001797 968 MIK 970 (1012)
Q Consensus 968 ~~~ 970 (1012)
++.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-05 Score=86.23 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 001797 290 KNKRLEDAKLLLKKMYDLKLNPNEVVYTTLING--FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKA 367 (1012)
Q Consensus 290 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (1012)
..+++..|........++ .||. .|.....+ +.+.|+.++|..+++.....+.. |..|...+-.+|-+.|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 456666666666666654 2333 12222222 34566666666666665544422 666666666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001797 368 KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGL 428 (1012)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 428 (1012)
..++++..+. .|+......+-.+|.+.+++.+-.+.--+|-+ ..+.+.+.+=++++.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 6666666654 45555555555556665555443333333322 2233344444444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-07 Score=98.55 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--HHHHHHHH
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL-KPNF--RTYTSLLH 845 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~ 845 (1012)
....++..+...|++++|.+.+++.++.. +.+...+..+...+...|++++|+.++++...... .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344444555555555555555554431 22233444444455555555555555554443210 1111 12334444
Q ss_pred HHHccCChhHHHHHHHHHH
Q 001797 846 GYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~~ 864 (1012)
.+...|++++|...++++.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 4555555555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-07 Score=95.52 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=128.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ-KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTM--KDA 821 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A 821 (1012)
..+..++|+.++.++++.+|....+|+....++...| ++++++..++++++.. +.+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 3455566666666666666666666666666666665 4566666666666532 23444555554444455542 455
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----HHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE---GNM----MKTIKL 894 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 894 (1012)
+.+++++++. -+-|..+|.....++...|+++++++.++++++.+.. +...|+....++... |.. ++++++
T Consensus 128 l~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666653 2235556666666666666677777777766653222 445555555444433 222 356666
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhcc----ccHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcC-------------
Q 001797 895 VDEMFLRGLVLNQNVYTSLANSLCKE----EEFYKVLKLLDEMGDKEIKLSHATCCI-LISSVYEAG------------- 956 (1012)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~g------------- 956 (1012)
..+++... |.+..+|+.+..++... ++..+|.+...++.+ ..|+.+.... ++..|++..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66666664 55666676666666652 344556666666554 3444443333 333343311
Q ss_pred -----CHHHHHHHHHHHHHCCCccChhHHHH
Q 001797 957 -----NIDKATRFLESMIKFGWVADSTVMMD 982 (1012)
Q Consensus 957 -----~~~~A~~~~~~~~~~g~~~~~~~~~~ 982 (1012)
..++|.++++.+. .+-|....|=.
T Consensus 283 ~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred ccccccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 3467888888883 55566666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-07 Score=106.10 Aligned_cols=248 Identities=13% Similarity=0.119 Sum_probs=200.1
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 752 ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-----VTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
-.+-|++.+...|.+...|...+....+.++.++|++++++++.. +.+.. -.|.++++....-|.-+...+.|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 455678888889999999999999999999999999999999875 54422 267777777778888888999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-
Q 001797 827 EMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL- 905 (1012)
Q Consensus 827 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 905 (1012)
++.+. ......|..|...|.+.+.+++|.++++.|+++ ......+|..++..+.+.++-+.|..+++++++.- |-
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~ 1597 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQ 1597 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chh
Confidence 99874 233457889999999999999999999999983 33567889999999999999999999999999874 43
Q ss_pred -CHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCccChh--HHH
Q 001797 906 -NQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC-ILISSVYEAGNIDKATRFLESMIKFGWVADST--VMM 981 (1012)
Q Consensus 906 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~ 981 (1012)
........+..-++.|+.+.++.+|+..+. -.|.....| ..+.+=.+.|+.+.++.+|++++..+|.|..- .|-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 355666688889999999999999999987 355544444 45566788999999999999999999999663 335
Q ss_pred HhhhhhhcccccccccccHHHHHHh
Q 001797 982 DLVKQDQNDANSENTSNSWKEAAAI 1006 (1012)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1012)
..+.-...+++.+.+.-.+.-|++|
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHH
Confidence 6666666677777777777777665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=91.49 Aligned_cols=230 Identities=8% Similarity=0.004 Sum_probs=151.6
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH--HH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDG-NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI--FE 785 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 785 (1012)
..++.++|+.+..+++.. .|+.. +|+....++...| ++++++..++++++.+|++..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 345667777777777763 44433 5665555666666 567788888888888877777777776666666653 56
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc---CCh----hHHHH
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGI---GKR----SEMFA 858 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~ 858 (1012)
++.+++++++.. +.+..+|.....++...|++++|++.+.++++.. ..|..+|+.....+.+. |.. ++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 677777777642 3466677777777777788888888888877642 33555666665555444 222 45666
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc------------
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLK----EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE------------ 921 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 921 (1012)
+..+++. ..| +...|+.+..++.. .++..+|.+.+.++...+ +.+..+...|++.|+...
T Consensus 205 y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6667775 455 55667777777666 244567888888877654 556777888888887532
Q ss_pred ------cHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 922 ------EFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 922 ------~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
..++|.+++..+.+ .+|--..||..
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~--~d~ir~~yw~~ 312 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEV--ADPMRRNYWAW 312 (320)
T ss_pred cccccccHHHHHHHHHHHHh--hCcHHHHHHHH
Confidence 34678888888843 66755555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=98.52 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH--HHHcc-
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLH--GYAGI- 850 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~- 850 (1012)
+.++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...++. .....
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhC
Confidence 34455556666666555432 23444455556666666666666666666542 22322 222222 22222
Q ss_pred -CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH-HHHHH
Q 001797 851 -GKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF-YKVLK 928 (1012)
Q Consensus 851 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~ 928 (1012)
.++.+|..+|+++.+ ...+++.+.+.++.++...|++++|.+.+++++..+ |.++.+...++.+..-.|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 256666666666554 234455666666666666666666666666666554 44556666666666666666 44555
Q ss_pred HHHHHhhCCCCCCHH
Q 001797 929 LLDEMGDKEIKLSHA 943 (1012)
Q Consensus 929 ~~~~~~~~g~~p~~~ 943 (1012)
.+.++.. ..|+++
T Consensus 258 ~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 258 YLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHCHH--HTTTSH
T ss_pred HHHHHHH--hCCCCh
Confidence 5555554 345544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-05 Score=101.55 Aligned_cols=375 Identities=11% Similarity=-0.007 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPD-LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISG 637 (1012)
Q Consensus 559 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 637 (1012)
.........+...|++.+|.......... +. ..........+...|+++.+...+..+.......+..........
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34455666788889988887655543211 10 111222233455678888777777665221111122223344445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC------CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 001797 638 FCKQGFIKEAFQLHEKMCESGIT------PN--IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTV----VTYTTII 705 (1012)
Q Consensus 638 ~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li 705 (1012)
+...|++++|..++......-.. +. ......+...+...|++++|...+++....-...+. ...+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 66788999999888877653111 11 112223344556788999999998887763111121 2344555
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C-c--hhhHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRG--V-TPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQK----GL-A-S--TSSFNA 772 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~--~-~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-~--~~~~~~ 772 (1012)
..+...|++++|...+++..... . .+. ..++..+...+...|++++|...+++.+.. +. . . ...+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 66778899999988888876421 1 111 124455566777889999998888877653 11 1 1 133456
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHH-----H
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKH--ITP--NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKPNFRTYT-----S 842 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~-----~ 842 (1012)
++..+...|++++|...+.+..... ..+ ....+..+...+...|++++|...+.++.... .......+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6777788899999888888775421 112 12344456667778888888888888775421 111111111 1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcC----Ccc-CHHHHHHHH
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPDG---VIYSMMVDAYLKEGNMMKTIKLVDEMFLRG----LVL-NQNVYTSLA 914 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~ 914 (1012)
.+..+...|+.++|..++............ ..+..++.++...|++++|...++++.... .+. ...++..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 123344578888888887665431111111 113456677888888888888888877652 111 234566778
Q ss_pred HHHhccccHHHHHHHHHHHhhC
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.++...|+.++|...+.++++.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888874
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00053 Score=77.58 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=143.9
Q ss_pred hcChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 001797 256 VGAIDEAFELKESMIHKGLV-PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFR 334 (1012)
Q Consensus 256 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (1012)
.+++..|+...++++++-+. +..-++.++ .+.|.|+.++|..+++.....+ ..|..|...+-..|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 57899999999999876432 222233322 3578999999999999887765 3488899999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHH
Q 001797 335 LKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENN----------MAKAYE 404 (1012)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~ 404 (1012)
+++..... .|+......+..+|.+.+++.+-.+.--++-+. ++.+...+=+++..+.+.-. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 577888888889999999888766665555553 23344444455555443211 123444
Q ss_pred HHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 001797 405 LLVDMKKRN-LSPTAYTCNVIINGLCRCSDLEGACRVF-EEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK 482 (1012)
Q Consensus 405 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 482 (1012)
.++.+.+.+ ...+..-...-...+-..|.+++|.+++ ....+.-...+...-+.-++.+...+++.+-.++..++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555443 1111111222223344567777777777 33333333334444455566666677777777777776666
Q ss_pred CC
Q 001797 483 GV 484 (1012)
Q Consensus 483 ~~ 484 (1012)
|.
T Consensus 256 ~~ 257 (932)
T KOG2053|consen 256 GN 257 (932)
T ss_pred CC
Confidence 53
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.9e-06 Score=101.66 Aligned_cols=372 Identities=12% Similarity=0.035 Sum_probs=240.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIY----TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLI 600 (1012)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 600 (1012)
........+...|++.+|....... + +.... ..........|++..+...++.+.......+........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 3445566677889998887655443 2 22221 222334556788887777776652211111222334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHH
Q 001797 601 HGLSRCGKIHEALEVFSELQDKGLV------PDV--ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI----VTYNA 668 (1012)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~------~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 668 (1012)
..+...|++++|..++......-.. +.. .....+...+...|++++|...+++..+.-...+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 5667889999999999887653111 111 11222334466789999999999998764222222 24456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCC--C-CHHHH
Q 001797 669 LIDGLCKSGELERARELFDGIFAK----GLT-PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR----GVT--P-DNFVY 736 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~--p-d~~~~ 736 (1012)
+...+...|++++|...+.+.... |.. +...++..+...+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 677788899999999999988753 111 11234455667788999999999999987542 211 1 22344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----Cc-hhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCCHHHH-----
Q 001797 737 CTLVDGCCRDGNMEKALSLFLEMVQKGL----AS-TSSFNALLNGLCKSQKIFEANKLLEDMADKHI-TPNHVTY----- 805 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~----- 805 (1012)
..+...+...|++++|...+.+...... .. ...+..++..+...|++++|.+.+++...... ......+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 5566667788999999999998866421 11 25566688889999999999999988854211 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC-HHHHHH
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF---RTYTSLLHGYAGIGKRSEMFALFDEMVER----GVEPD-GVIYSM 877 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 877 (1012)
...+..+...|+.+.|..++............ ..+..+..++...|++++|...++++.+. +..++ ..+...
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 11223445689999999998775532111111 12346777888999999999999998762 22222 245667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
++.++.+.|+.++|...+.++++..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7789999999999999999999986
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-07 Score=86.10 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=144.7
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 752 ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
+...+-......|.+..+ ..+...+...|+-+.+..+....... .+.|......++....+.|++.+|+..++++...
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 444444555566666666 66777788888888887777775542 3446666667888999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 001797 832 VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVY 910 (1012)
Q Consensus 832 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 910 (1012)
-++|...|+.++-+|.+.|+.++|..-|.++++ +.| ++..+++++-.|.-.|+++.|..++......+ +.|..+-
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~ 205 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVR 205 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHH
Confidence 466888999999999999999999999999997 455 66788899999999999999999999999886 4588999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHh
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..|+.+....|++++|.++..+-.
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999999877654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00038 Score=74.08 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 609 IHEALEVFSELQDKGLVPDVITYSSLISGFCKQ---GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAREL 685 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 685 (1012)
.+++..+++.....-...+..+|..+.+.--.. ++.+.....+++++......-..+|..+++.-.+..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666776665543333444454444322111 23666677777776543222234566777777777778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 686 FDGIFAKGLTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 686 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
|.++.+.+..+ .+..+++++.-|| .++.+-|.++|+--.+. +.-+..--...++-+...++-..+..+|++++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888776555 6777778887776 57788888888876654 333344445667777788888888888888888733
Q ss_pred Cch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 765 AST---SSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 765 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
... ..|..++..-..-|++..+.++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 322 78888888888888888888887777553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=101.81 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=171.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 728 GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTI 807 (1012)
Q Consensus 728 ~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 807 (1012)
+++|-...-..+...+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+|++..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 35565556667777888888889999888876 4567788889999988899888888777 4788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 001797 808 LIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEG 886 (1012)
Q Consensus 808 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 886 (1012)
+++..-..--+++|.++.+..... .-..+.......++++++.+.++...+ +.| -..+|..++.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh
Confidence 888877777788888887654432 122233333457889999999988876 555 6688999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHH
Q 001797 887 NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFL 965 (1012)
Q Consensus 887 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~ 965 (1012)
+++.|.+.|....... |.+...|+++..+|.+.|+..+|...+.++.+ +.-++...|...-- ..+.|.|++|++.+
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999886 77889999999999999999999999999988 44444444333222 46789999999999
Q ss_pred HHHHH
Q 001797 966 ESMIK 970 (1012)
Q Consensus 966 ~~~~~ 970 (1012)
+++..
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 99887
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-07 Score=95.60 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh-HHHHHH
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNM-MKTIKL 894 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~ 894 (1012)
.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.++++ ..| ++.+..+++.+....|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344555555544432 334444444444445555555555555444442 222 334444444444444444 334444
Q ss_pred HHHHHHc
Q 001797 895 VDEMFLR 901 (1012)
Q Consensus 895 ~~~~~~~ 901 (1012)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 4444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=84.68 Aligned_cols=120 Identities=9% Similarity=0.017 Sum_probs=92.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.++++..+ ..|+. +..++..+...|++++|...|+.++. ..| +...+..++.++...|++++|+..|++++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 34443 45567777888888888888888876 455 6677788888888888888888888888887
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
. |.++..+..++.++...|++++|++.++++++ +.|+++.++.+.+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQN 134 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 6 67788888888888888888888888888887 77888777766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00069 Score=72.17 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001797 644 IKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG---ELERARELFDGIFAK-GLTPTVVTYTTIIDGYCKSGNLTEAFQ 719 (1012)
Q Consensus 644 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 719 (1012)
.+++..+++..+..-..-+..+|..+.+.--..- ..+.....+++++.. ...|+ .+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 4556666666554322223444444433221111 255556666666654 22333 456667777777777888888
Q ss_pred HHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 001797 720 LVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798 (1012)
Q Consensus 720 l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 798 (1012)
+|.++.+.+..+ +..+.++++.-+| .++.+-|..+|+.-++..++.+.--...++.+...++-..|..+|++.+..++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 888888877766 5556777776554 56788888888888888887777777777888888888888888888887755
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 799 TPN--HVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 799 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
+|+ ...|..+++.-..-|++..+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 35788888888888888888888776654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-06 Score=86.85 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.++..+.+.|++++|+..+++++... .|.....+..++.++...|++++|.+.++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666677777777777766653 112345666677777777777777766666544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-06 Score=95.37 Aligned_cols=203 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHH
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-----FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFN 771 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 771 (1012)
+...|-..+....+.++.++|.++.++++.. +.+.. .+|.++++.....|.-+...++|+++.+. .++..+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cchHHHHH
Confidence 3455666666666677777777777766654 32221 25666666666666666666666666553 33346666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHH
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYA 848 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 848 (1012)
.|...|.+.+++++|.++++.|.++ +......|..++..+.++.+-++|..++.++++. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6666777777777777777776664 3345556666666666666666666666666653 222 112223344445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL 905 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 905 (1012)
+.|+.+.++.+|+..+.. .+--...|+.+++.-.+.|+.+.+..+|+++...++++
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666666666541 11134556666666666666666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=94.41 Aligned_cols=222 Identities=17% Similarity=0.123 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 589 ILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 589 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+|--..-..+...+...|-..+|..+|+++. .|...|.+|+..|+..+|..+..+.+++ +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444555567778888888889988887654 3566788888899889998888888774 778888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGN 748 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~ 748 (1012)
+++......-+++|.++++....+ +-..+.....+.++++++.+.++.-.+. .+.-..+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhh
Confidence 888877777788888888776543 2222222334578899999999887663 12244588888888888999
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEM 828 (1012)
Q Consensus 749 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 828 (1012)
++.|.+.|...+...|+...+|+.+..+|.+.|+..+|...+.+..+.+ ..+...|.+.+....+.|.+++|.+.+.++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 445556777778888999999999999888
Q ss_pred HH
Q 001797 829 QK 830 (1012)
Q Consensus 829 ~~ 830 (1012)
..
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-06 Score=84.28 Aligned_cols=117 Identities=11% Similarity=0.169 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCC--hHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAY-LKEGN--MMK 890 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~ 890 (1012)
.++.+++...+++.++. .+.|...|..|+..|...|++++|...|+++++ +.| +...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 55667777777776654 344677788888888888888888888888876 445 566677777654 56666 478
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|.++++++++.+ |.+..++..++..+...|++++|+..++++++
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888888876 56777888888888888888888888888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-08 Score=64.82 Aligned_cols=32 Identities=41% Similarity=0.846 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 273 GLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKM 304 (1012)
Q Consensus 273 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 304 (1012)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-05 Score=76.22 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHhhh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 712 GNLTEAFQLVNEMPS---RG-VTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~---~~-~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
.+.++..+++.++.. .| ..|+.. .|..+.-+....|+.+.|...++.+....|.+..+-..-+..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555555432 12 334433 3444444555667777777777777776666666655556666667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 001797 787 NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER 866 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 866 (1012)
.++++.+++.+ +.|.+++..=+...-..|+.-+|++-+.+..+. +..|...|.-|...|...|++++|.-.+++++-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 77777777653 335556655555556667766777777666664 556777777777777777777777777777764
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 001797 867 GVEP-DGVIYSMMVDAYLKEG---NMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 867 ~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 902 (1012)
+.| ++..+..+++.+.-.| +.+-|.++|.+.++..
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 555 3444445555554443 4566777777777664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=82.69 Aligned_cols=147 Identities=11% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 001797 809 IDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 809 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 887 (1012)
+..|...|+++......+++.. |. ..+...++.+++...+++.++ ..| +...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457788888876544433221 11 012236777888888888887 444 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHH-hcccc--HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 001797 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSL-CKEEE--FYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATR 963 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~ 963 (1012)
+++|...++++.... |.+..++..++.++ ...|+ .++|.++++++++ ..|++...+.+++. +.+.|++++|+.
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999997 77899999999975 67787 5999999999998 78999888888777 889999999999
Q ss_pred HHHHHHHCC
Q 001797 964 FLESMIKFG 972 (1012)
Q Consensus 964 ~~~~~~~~g 972 (1012)
.++++++..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999999855
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.8e-08 Score=63.57 Aligned_cols=32 Identities=47% Similarity=0.834 Sum_probs=15.9
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 343 GIKLNLFTYNALIGGICKAGEIEKAKGLMTEM 374 (1012)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (1012)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-06 Score=85.83 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh---h
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD-N---FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS---S 769 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 769 (1012)
....+..+...+...|++++|...++++... .|+ . .++..+..++...|++++|+..++++++..|.++. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445555666666677777777777766653 232 1 24556666677777777777777777777665553 4
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 001797 770 FNALLNGLCKS--------QKIFEANKLLEDMADKHITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY 840 (1012)
Q Consensus 770 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 840 (1012)
+..++.++... |++++|.+.++++.+. .|+.. .+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHH
Confidence 55566666554 6777777777777764 33322 2221111100 0000 0 0011
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 841 TSLLHGYAGIGKRSEMFALFDEMVERGV-EP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 841 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
..+...+...|++++|...++++++... .| ....+..++.++...|++++|.++++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455667788888888888888876311 23 3467778888888888888888888777665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-05 Score=80.22 Aligned_cols=164 Identities=16% Similarity=0.087 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAY 882 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 882 (1012)
......-.+...|++++|+..++.+... .+.|+..+......+.+.++.++|.+.+++++. ..|+ ......++.+|
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 3334444566789999999999998874 334555566778889999999999999999996 6675 66777888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKAT 962 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 962 (1012)
.+.|++.+|+..++...... |.|+..|..|+.+|...|+..+|...+.+. +.-.|+|++|+
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHH
Confidence 99999999999999998886 788999999999999999999998887765 45679999999
Q ss_pred HHHHHHHHC--CCccChhHHHHhhhhhhc
Q 001797 963 RFLESMIKF--GWVADSTVMMDLVKQDQN 989 (1012)
Q Consensus 963 ~~~~~~~~~--g~~~~~~~~~~~~~~~~~ 989 (1012)
..+....+. .-.|+-..+...|++-+.
T Consensus 446 ~~l~~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 446 IFLMRASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 998888773 234455555555555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=94.25 Aligned_cols=209 Identities=10% Similarity=0.057 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-------- 767 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 767 (1012)
+...+..|+..+...+++++|.++.++..+ ..|+.. .|..++..+.+.++...+..+ .++...+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 345677788888888888888888887666 355544 344444456666776666655 4444443333
Q ss_pred -----------hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 768 -----------SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 768 -----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
.++..|+.+|-+.|+.++|...++++++.. +.|+.+.|.++..|... +.++|++++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 444455555555555555555555555543 33445555555555555 555555555554432
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLVLNQNVYTSLA 914 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~ 914 (1012)
+...+++.++.+++.++.+ ..|+ ...+..+. +++... +...-...+.-+-
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHH----------------HHHHhhhccchhHHHHHHHH
Confidence 3334455555555555554 2222 11111111 111111 1111223344445
Q ss_pred HHHhccccHHHHHHHHHHHhhCCCCCCHHHHH
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
..|.+.++|++++.+++.+++ ++|.+....
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~ 260 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILE--HDNKNNKAR 260 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHh--cCCcchhhH
Confidence 666777777788888877776 556554333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-05 Score=92.03 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=74.8
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
.....+....++..|+.+..+.|++++|..+++...+ +.|+. .....++..+.+.+++++|+..+++.... -+.+.
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~ 154 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSA 154 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCH
Confidence 3344445555556666666666666666666666555 33432 34445555555666666666666555542 12233
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.....+..++.+.|++++|..+|++++. ..| +...+..++.++.+.|+.++|...|+++.+.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555566666666666666554 222 3455555555555666666666666665555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-06 Score=78.33 Aligned_cols=122 Identities=7% Similarity=-0.029 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 788 KLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 788 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.++++.++ +.|+. +..+...+...|++++|...|+++... -+.+...|..++.++...|++++|...|+++++
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 34444444 33433 445667777888888888888887764 233666777888888888888888888888886
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 868 VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 868 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
..| +...+..++.++...|++++|+..+++++... |.++..|...+.+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 445 66777788888888888888888888888875 55666665555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-05 Score=90.74 Aligned_cols=241 Identities=10% Similarity=0.078 Sum_probs=170.6
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 623 GLVP-DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTY 701 (1012)
Q Consensus 623 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 701 (1012)
++.| +...+..|+..+...+++++|.++.+..++.. +.....|..++..+...++.+++..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 3444 56678889999999999999999999877752 22344455555567777776665544 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
++.......++.-...+...|.. ..-+...+..++.+|-+.|+.++|..+|+++++.+|.++.+.+.++..|...
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 23333334444333334444444 2334458889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChhHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 860 (1012)
++++|.+++.+.+.. +...+++.++.++|.++... .|+. ..+.. +.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~----------------i~ 210 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLR----------------IE 210 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHH----------------HH
Confidence 999999999988763 56677899999999999874 3332 22222 22
Q ss_pred HHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 861 DEMVE-RGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 861 ~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+.+.. .+..--..++.-+...|.+.++|++++.+++.+++.. +.|..+...++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22222 1112223456666777888888999999999999886 556677777777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-05 Score=73.25 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHHHcCC------CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 746 DGNMEKALSLFLEMVQKGL------ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMK 819 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 819 (1012)
..+.++..+++..++...+ +.-..|..+.-+....|+.+.|..+++.+.+. ++.+...-..-+-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4577888888887765322 22255666666667778888888888887775 3334333333333455678888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 820 DAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 820 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
+|+++++.+++.. +.|.+++..-+...-.+|+.-+|++.+.+-++. +..|.+.|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887652 446667766666666777777888877777763 44478888888888888888888888888888
Q ss_pred HcCCccCHHHHHHHHHHHhccc---cHHHHHHHHHHHhhCCCCC
Q 001797 900 LRGLVLNQNVYTSLANSLCKEE---EFYKVLKLLDEMGDKEIKL 940 (1012)
Q Consensus 900 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p 940 (1012)
-.. |.++..+..++..++-.| +++-|.+.|.+.++ +.|
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 775 667777777887766655 45567778888776 555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=74.92 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 738 TLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 738 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
.+...+...|+-+....+..+.....+.+......++....+.|++.+|...+.+.... -++|...|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 33344444455455544444444444444444444555555555555555555555442 23445555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDE 897 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 897 (1012)
.++|..-|.+..+. ..-++...+.|+..+.-.|+++.|..++......+ .-|..+-.++..+....|++++|.++...
T Consensus 150 ~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 55555555555542 11233444555555555555555555555554311 11344444455555555555555554433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.8e-05 Score=76.87 Aligned_cols=284 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001797 602 GLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITP-NIVTYNALIDGLCKSGELE 680 (1012)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 680 (1012)
.+.+..++.+|+..+...++..+. +...|..-+..+...|++++|.--.+.-++. .| ......-...++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 344555666666666666665433 3444555555555566666665555444332 11 1112223333333444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 001797 681 RARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV-TPDNFVYCTLVD-GCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 681 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~pd~~~~~~l~~-~~~~~g~~~~A~~~~~~ 758 (1012)
+|...++ +...| ....|+..++....... +|-..++..+-. ++.-.|++++|...-..
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4444443 11111 11222233333322211 233334444432 23456677777777777
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
.++.++.+..+...-+.++.-.++.+.|...|++.+. ..|+...-..+-.. .+.+..+.
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~----------~k~le~~k--------- 253 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMM----------PKKLEVKK--------- 253 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhh----------HHHHHHHH---------
Confidence 7776666666666566666666777777777777665 33443321111000 00011111
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-----DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 913 (1012)
.-++-..+.|++.+|.+.|.+.+. +.| +...|...+.+..+.|+..+|+.-.+.+++.. +.-...|..-
T Consensus 254 ---~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~r 327 (486)
T KOG0550|consen 254 ---ERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRR 327 (486)
T ss_pred ---hhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHH
Confidence 112233455555555555555553 333 23344444555556666666666666666553 1112334444
Q ss_pred HHHHhccccHHHHHHHHHHHhh
Q 001797 914 ANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 914 ~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+.++...++|++|.+-++++.+
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-05 Score=87.50 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHH
Q 001797 694 LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNA 772 (1012)
Q Consensus 694 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 772 (1012)
.+.+...+..|..+..+.|++++|..+++...+ +.||.. ....++..+.+.+++++|+..+++++...|++......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 445678888888899999999999999999887 567665 67778888889999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLL 844 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 844 (1012)
++.++.+.|++++|.++|+++... .+.+..++..+...+...|+.++|...|++..+. ..|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999999999999999873 2345778888999999999999999999998875 345445555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00012 Score=77.43 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=87.5
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN-FRTYTSLL 844 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 844 (1012)
........+-.+...|++++|+..+..++.. .+.|+..+....+.+.+.++.++|.+.++++.. ..|+ ......+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a 381 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLA 381 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHH
Confidence 3345555555556666666666666666653 334455555556666666667777766666665 3343 44455666
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHH
Q 001797 845 HGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFY 924 (1012)
Q Consensus 845 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 924 (1012)
.+|.+.|++.+|+..++..... .+.|+..|..|+.+|...|+..+|...+. ..+.-.|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHH
Confidence 6666666666666666666542 22255666666666666666555544332 2344456666
Q ss_pred HHHHHHHHHhhC
Q 001797 925 KVLKLLDEMGDK 936 (1012)
Q Consensus 925 ~A~~~~~~~~~~ 936 (1012)
+|+..+..+.+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 666666666543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.6e-06 Score=75.15 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS 916 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 916 (1012)
.....++..+...|++++|...++.+.+. .| +...+..++.++...|++++|...++++...+ |.+...+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 34555666666677777777777666652 23 45566666677777777777777777766664 5566667777777
Q ss_pred HhccccHHHHHHHHHHHhhCCCCCCHHHHH
Q 001797 917 LCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 917 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
+...|++++|.+.++++.+ +.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 7777777777777777766 456555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00071 Score=65.69 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 852 KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
.+.+|.-+|+++-++ ..|++.+.+..+.+....|++++|..+++.++.+. +.++.+...++-+-...|.-
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 344444455554431 34444444444444444555555555555555443 23344444444443334433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-06 Score=82.35 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=96.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
++-..+.++|++|+..|.++++ +.| |+.-|..-+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCc
Confidence 3446678889999999999986 677 44555577788999999999999999988886 5557888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHH---HHHHHHHHHHHCCCccChhHHH
Q 001797 923 FYKVLKLLDEMGDKEIKLSHATCCILISSVY-EAGNID---KATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 923 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~g~~~---~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
+++|++.|+++++ ++|+++++...+...- +.+... .+..-++.....|.-|+...+-
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~ 225 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMF 225 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhh
Confidence 9999999999888 8899988877765522 122222 3344444444444446555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00066 Score=65.89 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=97.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 001797 635 ISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK---- 710 (1012)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 710 (1012)
...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 345777777888777766521 2222222334456667777788877777763 244556656655543
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH-HHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA-NKL 789 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 789 (1012)
.+.+.+|.-+|++|.++ .+|+..+.+..+.++...|++++|..+++.++.+.+..+.+...++-+-...|...++ .+.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 44577788888888765 6777777777777777888888888888888888777776666665555555554443 344
Q ss_pred HHHHHh
Q 001797 790 LEDMAD 795 (1012)
Q Consensus 790 ~~~~~~ 795 (1012)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-05 Score=71.36 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
+++++...|.+......++..+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+. .+.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DPD 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 333444444433344444444444444444444444443321 223333444444444444444444444443332 122
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
+...+..++..+...|++++|...|+.++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23333334444444444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00089 Score=69.02 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=69.4
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSR---GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~---~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+.++..++.-..++..-+.++.-.++|
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888763 22334445666666777888899999888888888877778888888888888888
Q ss_pred HHHHHHHHHHHhC
Q 001797 784 FEANKLLEDMADK 796 (1012)
Q Consensus 784 ~~A~~~~~~~~~~ 796 (1012)
++|.+-+++..+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=71.45 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=47.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
.+...+...|++++|.++|+-... +.| +..-|..|+-++...|++++|+..|..+.... |.++..+..++.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 444444555555555555555543 333 33444455555555555555555555555554 44555555555555555
Q ss_pred ccHHHHHHHHHHHhh
Q 001797 921 EEFYKVLKLLDEMGD 935 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~ 935 (1012)
|+.+.|++.|+.++.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0095 Score=61.12 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=167.8
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHH
Q 001797 596 YSVLIHGLS--RCGKIHEALEVFSELQDKGLVPDVITYSSLISG--FCKQGFIKEAFQLHEKMCESGITPNIVT--YNAL 669 (1012)
Q Consensus 596 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 669 (1012)
|..|-.++. -.|+-..|.+.-.+..+. +..|......++.+ -.-.|++++|.+-|+.|... |.... +..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 346666776666554322 22244444444443 34578999999999998762 22221 2333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHH--HHHHHHHHH---
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNF--VYCTLVDGC--- 743 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~--~~~~l~~~~--- 743 (1012)
.-.-.+.|+.+.|+.+-+....+. +.-...+...+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333456788888888888877652 2234667788888899999999999988654432 334432 122222221
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
.-..+...|...-.+..+..|+-...-..-+..+.+.|+..++-.+++.+-+....|+.. +...+.+.|+ .+..
T Consensus 240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHH
Confidence 122356677777777777777666666666777778888888888888777753333322 1222334443 2333
Q ss_pred HHHHHHH-CCCCCC-hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 001797 824 LLVEMQK-RVLKPN-FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK-EGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 824 ~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 900 (1012)
-+++..+ ..++|| ......+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++.+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3333322 113443 33445555666666666666655555543 55555556555544433 3666666666666655
Q ss_pred c
Q 001797 901 R 901 (1012)
Q Consensus 901 ~ 901 (1012)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.013 Score=60.16 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=177.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHhcCCHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIID--GYCKSGNLTEAFQLVNEMPSRGVTPDNFV--YCTLVDGCCRDGNME 750 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~~~~~~~~pd~~~--~~~l~~~~~~~g~~~ 750 (1012)
..|+-..|.++-.+.... +..|......++. +-.-.|++++|.+-|+.|.. .|.... +..|.-.-.+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 356777777766554422 1223333322332 23347888888888888875 232221 122222224678888
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHH---HhcCCHHHHHHH
Q 001797 751 KALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKH-ITPNHV--TYTILIDYH---CKAGTMKDAEHL 824 (1012)
Q Consensus 751 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~---~~~g~~~~A~~~ 824 (1012)
.|+.+-+..-..-|.-.-+....+...|..|+|+.|+++.+.-.... +.++.. .-..|+.+- .-.-+...|...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88888888888888888888888888889999999998888765432 333332 111222211 112356666666
Q ss_pred HHHHHHCCCCCChHH-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---HH
Q 001797 825 LVEMQKRVLKPNFRT-YTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM---FL 900 (1012)
Q Consensus 825 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 900 (1012)
-.+..+ +.||..- -..-...+.+.|+..++-.+++.+-+ ..|.+.++.... +.+.|+. ++.-++++ ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK--~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK--AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh--cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 655554 5666553 33446788899999999999999886 455555543333 3456653 33333333 22
Q ss_pred cCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 901 RGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 901 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
.. +.+......++.+-...|++..|..-.+.+.. ..|....+..+..- -.+.|+-.++...+-+..+
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 22 45778888888999999999999988888876 67765555444443 4567999999998888777
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-05 Score=68.26 Aligned_cols=98 Identities=7% Similarity=0.080 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
+....+.++..+...|++++|.++|+-+.... |.+...|..|+-++...|++++|+..|..+.. +.|+++..+...+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 33455566666777777777777777777665 55677777777777777777777777777776 6677766666555
Q ss_pred H-HHhcCCHHHHHHHHHHHHHC
Q 001797 951 S-VYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 951 ~-~~~~g~~~~A~~~~~~~~~~ 971 (1012)
. +...|+.++|++.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5 66777777777777777763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.8e-05 Score=69.38 Aligned_cols=117 Identities=11% Similarity=0.129 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCh
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNM 888 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 888 (1012)
..++...+...++.+... .+.+ ......+...+...|++++|...|+.+++....|+ ......|+.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 366777777777777653 2222 12333455666777777777777777776432222 12344566777777777
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 933 (1012)
++|+..++..... +..+..+..+++++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777664332 244566667777777777777777777664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=68.47 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 001797 746 DGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPN--HVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 820 (1012)
.++...+...++.+...+|..+ .+...++..+...|++++|...|+.+.+....|+ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555555442 3333444555555555555555555554321111 1122334444444555555
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
|+..++.... .......+..++..|...|++++|+..|++
T Consensus 104 Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544433211 111222333444444444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5e-05 Score=77.41 Aligned_cols=285 Identities=17% Similarity=0.169 Sum_probs=160.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhh--hC--CCC-CCHHHHHHHH
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTV----VTYTTIIDGYCKSGNLTEAFQLVNEMP--SR--GVT-PDNFVYCTLV 740 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~~--~~--~~~-pd~~~~~~l~ 740 (1012)
..-+|+.|+......+|+..++-|.. |. ..|..|.++|.-.+++++|+++...=+ .+ |-+ -....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34588999999999999999887643 33 346666677777788888887654211 10 111 1122334455
Q ss_pred HHHHhcCCHHHHHHHHHHHH----HcCCC--chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMV----QKGLA--STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 814 (1012)
+.+--.|.+++|+....+-+ +.+.. ...++..|+..|...|+--.-.. -.+.|-.|+.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH----------
Confidence 56666678888876655432 22221 22667777777776664210000 000011111110
Q ss_pred cCCHHHHHHHHHHHHH----CCCC-CChHHHHHHHHHHHccCChhHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHh
Q 001797 815 AGTMKDAEHLLVEMQK----RVLK-PNFRTYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEP-DGVIYSMMVDAYLK 884 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~ 884 (1012)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|++++|+...+.=++ .|-.. ....+.++++++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 012333444432221 1100 0123566677777777888888776554332 33221 23456677888888
Q ss_pred cCChHHHHHHHHHHHHcCC-----ccCHHHHHHHHHHHhccccHHHHHHHHHHHhh--CCC---CCCHHHHHHHHHHHHh
Q 001797 885 EGNMMKTIKLVDEMFLRGL-----VLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD--KEI---KLSHATCCILISSVYE 954 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~---~p~~~~~~~ll~~~~~ 954 (1012)
.|+++.|.+.|+..+...+ ......-..|++.|.-..++++|+.+..+=+. +.+ --.--.||.+..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8888888888877655421 12345566678888888888888876655322 101 1223455666666778
Q ss_pred cCCHHHHHHHHHHHHH
Q 001797 955 AGNIDKATRFLESMIK 970 (1012)
Q Consensus 955 ~g~~~~A~~~~~~~~~ 970 (1012)
.|..++|..+.+.-++
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888877776666
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.028 Score=59.13 Aligned_cols=483 Identities=13% Similarity=0.144 Sum_probs=224.0
Q ss_pred HHHHhcCChhHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 001797 163 DGYRKIGFLDDAAIVFFGVVKDGGSVPG----LLCCNSILNDLLRANKLKLFWKVYDVMLEA-KVTPDVYTYTSLINAHF 237 (1012)
Q Consensus 163 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~ 237 (1012)
-.+.+++++.+|..+|.++..+....|. ....+.+++++.-. +.+.......+..+. |..+-...+ ..-.+.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y 90 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLF--KALVAY 90 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHH--HHHHHH
Confidence 3467899999999999998655544443 55678888888754 344444444444433 222212222 222235
Q ss_pred hcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCH
Q 001797 238 RAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLK----LNPNE 313 (1012)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 313 (1012)
+.|.+++|.+.|..-.++..+..- -+.+.=.. ..-+|-+.-+..+..+...|++.+++.+++++...- +..+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~--~~Ld~ni~-~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTES--PWLDTNIQ-QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhccccc--chhhhhHH-HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 888899888877654332000000 00000000 011344555667788889999999999988887643 34788
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 001797 314 VVYTTLINGFMKQGNLQEAFRLKNEMVT---FGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLI 390 (1012)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 390 (1012)
.+|+.++-.+.+ ..|-++.+ .++-| -|.-+|-.|.+.=..- +.-.=..+.|.......++
T Consensus 168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~p---dyYemilfY~kki~~~------d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 168 DMYDRAVLMLSR--------SYFLELKESMSSDLYP---DYYEMILFYLKKIHAF------DQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHhcccccCh---HHHHHHHHHHHHHHHH------hhchHHhhCcHHHHHHHHH
Confidence 888876655543 23444432 22233 2455555665431111 1111011234333333333
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHH
Q 001797 391 EGCYRE--NNMAKAYELLVDMKKRNLSPTA-YTCNVIINGLCRCSDLEGACRVFEEMIACGLKP----NNFVYTTLIQAH 463 (1012)
Q Consensus 391 ~~~~~~--g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~ 463 (1012)
....-. .+..--+++++.-...-+.|+. .....+..-+.+ +.+++..+-+.+....+.+ =..++..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 332211 1111112222222222223332 222233333332 4455544444443321111 123566666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 001797 464 LRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAAD 543 (1012)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 543 (1012)
.+.++...|.+.+.-+... .|+...-..+ --..+.+..|... |...++. ...-+
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~----DD~~~Tk----------lr~yL 362 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCE----DDESYTK----------LRDYL 362 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhc----chHHHHH----------HHHHH
Confidence 7777777777776655543 2322211111 0011111122111 1111111 11112
Q ss_pred HHHHHHHHCCCCCCH-HHH-HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHH---hcCCHHHHH
Q 001797 544 RYFQEMLNCGIAPND-IIY-TTLIDGHCKEGN-VKEAFSTFRCMLGRGILPDLKTYSVLI----HGLS---RCGKIHEAL 613 (1012)
Q Consensus 544 ~~~~~~~~~~~~~~~-~~~-~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~---~~g~~~~A~ 613 (1012)
.++++....++.... +.| ..-..-+-+.|. -++|+.+++.++.-. +-|...-|.+. ..|. ....+..-+
T Consensus 363 ~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 363 NLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222222111000 001 011112223333 444555554444321 11222222111 1111 123344444
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001797 614 EVFSELQDKGLVPD----VITYSSLISG--FCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 614 ~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
++-+-+.+.|+.|- ...-|.+.++ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555556666653 2334444444 4567888887665555554 46788888887777777888888888877
Q ss_pred HHHhCCCCCCHHHHHHH
Q 001797 688 GIFAKGLTPTVVTYTTI 704 (1012)
Q Consensus 688 ~~~~~~~~p~~~~~~~l 704 (1012)
.+ +|+..+++.-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 4566555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=78.64 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE 885 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 885 (1012)
..|+..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++++.+.. .+-+...+...+..|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 34444555566777777777776653 243 2334566666666666777777766642 112445555555666677
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 886 GNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 886 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
++++.|+++.+++.... |.+..+|..|+.+|...|++++|+-.+..+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777664 5556667777777777777777776666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.034 Score=58.59 Aligned_cols=206 Identities=15% Similarity=0.145 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh------hHHHHHHHHH----hcCcHHHHHHHHHHHHhCCCCCC-HH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS------SFNALLNGLC----KSQKIFEANKLLEDMADKHITPN-HV 803 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~-~~ 803 (1012)
++..++....+.++..+|...+..+.-.+|.... +-..+.++.| ...+..+=+.+++.....++... .+
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 4555555566666666666666655555554331 1112333333 12233344555555554332211 11
Q ss_pred HH-HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHH----HHHHc---cCChhHHHHHHHHHHHcCCCC----
Q 001797 804 TY-TILIDYHCKAGT-MKDAEHLLVEMQKRVLKPNFRTYTSLL----HGYAG---IGKRSEMFALFDEMVERGVEP---- 870 (1012)
Q Consensus 804 ~~-~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p---- 870 (1012)
.| ..-+.-+.+.|. -++|+.+++.+++. .+-|...-+.+. ..|.. .....+-.++-+-+.+.|+.|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 11 122334567776 78888998888763 122443333322 22211 223344444444444567777
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 871 DGVIYSMMVD--AYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 871 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+.+.-+.|.+ -+...|++.++.-.-.-+.+-. |++.+|..+|-++....++++|...+.++ +|+...+..-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 3455666663 4678899999988777666654 79999999999999999999999998764 5666655444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=64.62 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 001797 885 EGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKAT 962 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~ 962 (1012)
.|++++|+.+++++.+.... ++...+..++.++...|++++|++++++ .+ ..|.+....++++. +.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666666411 1344555566666666777666666666 22 34555444444433 66667777776
Q ss_pred HHHHH
Q 001797 963 RFLES 967 (1012)
Q Consensus 963 ~~~~~ 967 (1012)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=78.97 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=79.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
+..+...|++++|+.+|+++++ ..| +...|..++.+|...|++++|+..+++++... |.+..+|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 4556677888888888888886 444 56677777888888888888888888888876 5677888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 923 FYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 923 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+++|+..++++++ +.|+++.....+..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8888888888887 67877766655533
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.3e-05 Score=75.50 Aligned_cols=287 Identities=14% Similarity=0.092 Sum_probs=158.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHH--hC--CCC-CCHHHHHHHHH
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIV----TYNALIDGLCKSGELERARELFDGIF--AK--GLT-PTVVTYTTIID 706 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~-p~~~~~~~li~ 706 (1012)
.-+|+.|+......+|+..++.|.+ |.. +|..|.++|.-.+++++|+++-..=+ .+ |-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3589999999999999999998744 433 46778888888899999988754322 11 110 01122333455
Q ss_pred HHHHcCCHHHHHHHHHHhh----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMP----SRGV-TPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLC 778 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~----~~~~-~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~ 778 (1012)
.+--.|.+++|+-...+-. +.|- ......+..+.+.|...|+--... ...+.+..+. .++..-+..|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHHHHHHHHHHHH
Confidence 5666788888876654432 2111 112335556666665554310000 0000010011 11111111111
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-ChHHHHHHHHHHHccCCh
Q 001797 779 KSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQ----KRVLKP-NFRTYTSLLHGYAGIGKR 853 (1012)
Q Consensus 779 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~ 853 (1012)
+-+++.+.+-+.+ ..-..|..|.+.|.-.|+++.|+..-+.-+ +.|-.. ....+..+.+++.-.|++
T Consensus 180 ------eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 180 ------ENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred ------HHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 1111111111110 112356666666667777777776554322 222222 223566777777778888
Q ss_pred hHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CccCHHHHHHHHHHHhccccH
Q 001797 854 SEMFALFDEMVE----RGVE-PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG-----LVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 854 ~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+.|.+.|+..+. .|-. ......+.|++.|.-..++++|+.+.++-+... ......++..|++++-..|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 888877776542 2222 134566677777777778888888776654431 112456777788888888888
Q ss_pred HHHHHHHHHHhh
Q 001797 924 YKVLKLLDEMGD 935 (1012)
Q Consensus 924 ~~A~~~~~~~~~ 935 (1012)
++|..+.+..++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0015 Score=59.57 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cCHHHH
Q 001797 833 LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV--LNQNVY 910 (1012)
Q Consensus 833 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 910 (1012)
..|....-..|..+..+.|++.||...|++.+.--..-|......+.++....++...|...++++.+-+ | .++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCch
Confidence 3455555556677777777777777777777652233366666667777777777777777777776654 2 223445
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
..++..+...|++++|+..++.+.+ +.|+..........+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5667777777777777777777776 56665544444444667776655543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00049 Score=73.99 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDG 747 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g 747 (1012)
.|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|++++++.+.. .+-+...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444445566666666666666552 332 233555555566666666666666643 2224444444455556666
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
+++.|+.+.+++++..|....+|..|+.+|.+.|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666655554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=65.17 Aligned_cols=81 Identities=17% Similarity=0.351 Sum_probs=52.0
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHH
Q 001797 850 IGKRSEMFALFDEMVERGV-EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLK 928 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 928 (1012)
.|++++|+.+++++++... .|+...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777776322 12445555677777788888888877777 3332 2344555566777788888888877
Q ss_pred HHHH
Q 001797 929 LLDE 932 (1012)
Q Consensus 929 ~~~~ 932 (1012)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00046 Score=77.97 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHcc--------CChhHHHHHHHHH
Q 001797 798 ITPNHVTYTILIDYHCK--A---GTMKDAEHLLVEMQKRVLKPN-FRTYTSLLHGYAGI--------GKRSEMFALFDEM 863 (1012)
Q Consensus 798 ~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 863 (1012)
.+.+...|...+.+... . +..++|..+|+++.+ ..|+ ...|..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34455566655555322 2 235567777777765 3443 33444444433222 1233444444444
Q ss_pred HHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCH
Q 001797 864 VERG-VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH 942 (1012)
Q Consensus 864 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 942 (1012)
.... ...++..+..++-.....|++++|...+++++..+ |+...|..++.++...|+.++|.+.+.++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 4322 22356778878777777899999999999999997 5888999999999999999999999999998 88999
Q ss_pred HHHHHHHHH
Q 001797 943 ATCCILISS 951 (1012)
Q Consensus 943 ~~~~~ll~~ 951 (1012)
+++++.=+.
T Consensus 487 pt~~~~~~~ 495 (517)
T PRK10153 487 NTLYWIENL 495 (517)
T ss_pred chHHHHHhc
Confidence 987665443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.063 Score=59.31 Aligned_cols=379 Identities=14% Similarity=0.139 Sum_probs=200.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC--------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTAN-GLKP--------NLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAP 556 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 556 (1012)
|.+..|..+.......-.++-|...|-+.... |++. +...-.+-+.+| -|++++|.+++-++-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 55666776666665655666666666544321 1110 000001112222 378888888887765432
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 557 NDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR-GILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLI 635 (1012)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 635 (1012)
..|..+.+.|++-...++++.--.. .-..-..+++.+...+.....+++|.+.|..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455667777777666655431110 00111356888888888888899999888764321 2356
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLT 715 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 715 (1012)
.++.+..++++-..+...+ +.+....-.+.+++...|.-++|.+.|-+.. .|. ..+..|...++|.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHH
Confidence 6777777776655554443 4455667788899999999999988775432 122 2345677888999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTL-VDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 794 (1012)
+|.++.++.. -|...++.+- ..-+...++.-+|++. +-+.|+.-+|.+++.+|.
T Consensus 896 ~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~---------------------~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 896 EAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEK---------------------DRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHH---------------------hhhcccchhHHHHHHHHh
Confidence 9999887754 2333333221 1112333444444443 344566666666666665
Q ss_pred hC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 001797 795 DK----HITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVE 869 (1012)
Q Consensus 795 ~~----~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 869 (1012)
+. +.++-.. -...|...+ ..+..++.+-.++....|...+... +...|-..++-.+.+..-. |
T Consensus 951 e~e~~K~~p~lr~KklYVL~AlL--vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g-- 1018 (1189)
T KOG2041|consen 951 EREQEKYVPYLRLKKLYVLGALL--VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G-- 1018 (1189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--
Confidence 42 2222111 111111111 1122333333333333332222211 1111222222222221110 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 870 PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 870 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
....++..|++-....|..+.|++..-.+..- .+-|...+|..|+-+-+....+--.-+.+-++.+
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 12233444455566678888887765444332 2346678888888887777777766666666544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00032 Score=62.91 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=54.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--ccCHHHHHHHHH
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVE-P-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL--VLNQNVYTSLAN 915 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 915 (1012)
+..++..+...|++++|.+.|.++++.... | ....+..++.++.+.|++++|+..++.+..... +....++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555566666666666666542110 1 123444555666666666666666666655430 112345556666
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++.+.|++++|.+.++++.+ ..|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 66666666666666666655 345444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.4e-05 Score=58.98 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++..+...|++++|++.+++++... |.+..++..++.++...|++++|+..++++++ ..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCC
Confidence 4566777777888888887777775 55677777777777788888888877777776 566654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=71.52 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=84.9
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
-+.+.+++.+|+..|.+.++. .+-|.+-|..-..+|.+.|.++.|++-.+.++..+|....+|..|+.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 356788999999999999985 2346677888888999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 001797 787 NKLLEDMADKHITPNHVTYTILI 809 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~ 809 (1012)
.+.|++.++ +.|+..+|..=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 999999888 778777665433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0046 Score=56.56 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 001797 798 ITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYS 876 (1012)
Q Consensus 798 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 876 (1012)
+.|+...-..|..++.+.|++.||...|++...--+..|......+.++....++..+|...+++..+....- .+....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3455555567778888888888888888887764455577777788888888888888888888887632110 234455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.++..|...|++.+|...++.+.+.- |++..-...+..+.++|+..+|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778888888888888888888774 5666666667778888888877776666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00075 Score=64.99 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|+..+++++... |.+...+..++.++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33344444444444444444444443211111 1334444444444455555555444444442 23344444444444
Q ss_pred hcccc--------------HHHHHHHHHHHhh
Q 001797 918 CKEEE--------------FYKVLKLLDEMGD 935 (1012)
Q Consensus 918 ~~~g~--------------~~~A~~~~~~~~~ 935 (1012)
...|+ +++|.+.++++..
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 44444 4555566665554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=51.39 Aligned_cols=33 Identities=39% Similarity=0.811 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPN 312 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 312 (1012)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666665554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=60.08 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=48.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+..++..+...|++++|...++++++ ..| +...+..++.++...|++++|.+.+++..... +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 33444555555556666655555554 222 23444455555555555555555555555543 333445555555555
Q ss_pred ccccHHHHHHHHHHHhh
Q 001797 919 KEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~ 935 (1012)
..|++++|.+.+.++.+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 55555555555555543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00032 Score=59.71 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS-SVY 953 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~-~~~ 953 (1012)
+..++..+...|++++|...++++.+.. |.+...+..++.++...|++++|.+.++++.+ ..|..+..+..++ .+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 4445555666666666666666666654 33445566666666666666666666666655 3444443333333 355
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001797 954 EAGNIDKATRFLESMIK 970 (1012)
Q Consensus 954 ~~g~~~~A~~~~~~~~~ 970 (1012)
..|++++|...++..++
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.1e-05 Score=58.68 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
.+.|++++|++.++++.... |.+..++..++.+|.+.|++++|.+.++++.. ..|+++.++.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 56788888888888888886 66788888888888888888888888888877 5788777776654
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0043 Score=62.94 Aligned_cols=176 Identities=11% Similarity=0.090 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQKGLASTS---SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK-- 814 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 814 (1012)
...+...|++++|.+.|+.++...|.++. +...++.+|.+.+++++|...+++.++.........|.....+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33444566666666666666666665552 2345566666666666666666666653221111222222222211
Q ss_pred c------------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001797 815 A------------------GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYS 876 (1012)
Q Consensus 815 ~------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 876 (1012)
. ....+|+..|+++++. -|+. .-..+|...+..+... =...-.
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHHHH
Confidence 1 1123444555555542 2322 2233444333333210 011222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..+..|.+.|.+..|+.-++.+++.- .+....+...++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45567778888888888888888762 22335666677777878888877777766553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=75.78 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=87.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhc
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEA 955 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~ 955 (1012)
..+..+...|++++|++.|++++... |.+...|..++.++...|++++|+..++++++ +.|+++..+..++. +...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 44567788999999999999999987 77899999999999999999999999999998 78988877777666 8899
Q ss_pred CCHHHHHHHHHHHHHCCCccChhHHHH
Q 001797 956 GNIDKATRFLESMIKFGWVADSTVMMD 982 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~~g~~~~~~~~~~ 982 (1012)
|++++|+..|++.++.. |+...+..
T Consensus 84 g~~~eA~~~~~~al~l~--P~~~~~~~ 108 (356)
T PLN03088 84 EEYQTAKAALEKGASLA--PGDSRFTK 108 (356)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 99999999999999865 54444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=50.85 Aligned_cols=31 Identities=58% Similarity=1.032 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 351 YNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333444444444444444433333333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0008 Score=60.26 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHIT--PNHVTYTILIDYHC 813 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~ 813 (1012)
++..+...|++++|.+.|+.+++..|.+. .++..++.++.+.|++++|...++.+...... .....+..++.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33334444444444444444444333321 23333444444444444444444444332100 01223333344444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~ 830 (1012)
+.|+.++|...++++.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 44444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=74.15 Aligned_cols=135 Identities=11% Similarity=0.063 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC--------cHHHHHHHHHHHHh
Q 001797 729 VTPDNFVYCTLVDGCCR--D---GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ--------KIFEANKLLEDMAD 795 (1012)
Q Consensus 729 ~~pd~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 795 (1012)
.+.+...|..++.+... . ++.++|+.+|+++++.+|....++..++.+|.... ++..+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45566677777666432 2 23678889999999998888877777666554321 12223333333222
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 796 K-HITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 796 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
. ..+.++..|..+.-.....|++++|...++++++. .|+...|..++..+...|+.++|.+.++++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 11223344554544444455566666555555542 34555555555555555666655555555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=57.31 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc-cHHHHHHHHHHHhh
Q 001797 872 GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE-EFYKVLKLLDEMGD 935 (1012)
Q Consensus 872 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 935 (1012)
+..|..++..+...|++++|+..|+++++.. |.+..+|..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555666666666666666666666654 445556666666666666 56666666666554
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.017 Score=58.61 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=112.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHH
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-V---YCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLN 775 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 775 (1012)
.....+...|++++|++.|+++... .|+.. . ...++.++.+.+++++|...+++.++..|.++ .++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3445556788888888888888774 33322 2 24556777888899999999999988888766 34444444
Q ss_pred HHHhcC---------------c---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 776 GLCKSQ---------------K---IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 776 ~~~~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
++...+ + ..+|.+.|+++++. -|+. .-..+|...+..+... + .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-l---a 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-L---A 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-H---H
Confidence 332221 1 24555666666653 2333 2234444444333321 0 0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVER--GVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
..-..++..|.+.|.+..|..-++.+++. +.....+....++.+|.+.|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11225677788999999999999999972 222245677788899999999999998876654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.002 Score=56.49 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc---CHHHHHHHHHHH
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL---NQNVYTSLANSL 917 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 917 (1012)
+.+++...|+.++|+.+|++.++.|+.+. ...+..++..|...|++++|..++++..... |. +......++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555556666666666666666554432 2334455566666666666666666665542 22 333444445556
Q ss_pred hccccHHHHHHHHHHHh
Q 001797 918 CKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 918 ~~~g~~~~A~~~~~~~~ 934 (1012)
...|+.++|++++...+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0019 Score=64.76 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc---cHHHHHHHHHHHhhCCCCCCHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE---EFYKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
|...|..|+..|...|+...|...|.++.... ++++..+..++.++..+. ...++..++++++. .+|++....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHH
Confidence 66677777777777777777777777777765 566777777776655443 34566777777776 5677766666
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHCC
Q 001797 948 LISS-VYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 948 ll~~-~~~~g~~~~A~~~~~~~~~~g 972 (1012)
+++. +..+|++.+|...++.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6555 677777777777777777754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.011 Score=58.60 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=85.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK- 814 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 814 (1012)
.+..+...|++.+|+..|+.+....|.++ .+...++.++.+.|++++|...+++.++.........+.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777777776666544 55666677777777777777777776653211111112211111111
Q ss_pred ------------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001797 815 ------------AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAY 882 (1012)
Q Consensus 815 ------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 882 (1012)
.+...+|...|+.++ .-|-......+|...+..+.+. =...-..++..|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 112233344443333 3333344444555444443321 011223356777
Q ss_pred HhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhccccHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
.+.|.+..|..-++.+++.- |.+ ..+...++.++.+.|..+.|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888888888888877773 322 344556667777777766443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00097 Score=63.96 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP--DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS 916 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 916 (1012)
.|..++..+...|++++|...|++++.....| ...++..++.++...|++++|++.+++++... |.....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45555666666677777777777666422122 12356666677777777777777777776653 3445555555555
Q ss_pred Hh-------ccccHHHHHHHHH
Q 001797 917 LC-------KEEEFYKVLKLLD 931 (1012)
Q Consensus 917 ~~-------~~g~~~~A~~~~~ 931 (1012)
+. +.|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 55 6666664444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0062 Score=63.94 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHh
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGV 181 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~ 181 (1012)
..|.--...|...|++++|.+.|.++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 45666667777788888888888776
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0079 Score=63.15 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHHHHHHHcc-CChhHHHHHHHHHHHc-CC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-----cCH-
Q 001797 840 YTSLLHGYAGI-GKRSEMFALFDEMVER-GV--EP--DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-----LNQ- 907 (1012)
Q Consensus 840 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~- 907 (1012)
+..++..|... |++++|+++|+++.+. .. .+ -...+..++..+.+.|++++|++.|+++...... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455667777 8999999999988862 11 11 1245667778899999999999999999876422 112
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCH--HHHHHHHHH---HHhcCC---HHHHHHHHHHHHH
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH--ATCCILISS---VYEAGN---IDKATRFLESMIK 970 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~---~~~~g~---~~~A~~~~~~~~~ 970 (1012)
..+...+-++...||...|.+.+++... ..|.- +.-..++.. -++.|+ +++|..-|+++.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2344556678889999999999999876 44422 111223333 234444 5556666655433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=57.34 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC---HHHHHHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS---HATCCIL 948 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 948 (1012)
....+++++-..|+.++|+.+|++.+..|.... ...+..++..+...|++++|..++++... -.|+ +......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHH
Confidence 455678889999999999999999999986543 56788899999999999999999999987 3466 3333333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHH
Q 001797 949 IS-SVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 949 l~-~~~~~g~~~~A~~~~~~~~~ 970 (1012)
+. .+...|++++|.+.+-..+-
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 37899999999999877664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00014 Score=47.79 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001797 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP 311 (1012)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 311 (1012)
.+|+.++.+|++.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355556666666666666666666665555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=61.86 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITP--NHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.+..++..+...|++++|...|++.+.....+ ...++..+...+...|++++|+..+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554321111 112445555555555555555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=47.44 Aligned_cols=30 Identities=43% Similarity=0.623 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 350 TYNALIGGICKAGEIEKAKGLMTEMLRLGI 379 (1012)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (1012)
+|+.++.+|++.|+++.|..+|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0049 Score=59.31 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNG 776 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 776 (1012)
..+..+...+...|++++|...+++.......+. ...+..+...+...|++++|...++++++..|.....+..++..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455555666667777777777777665322221 24566667777777777777777777777777766777777777
Q ss_pred HHhcCcHHHHHHH
Q 001797 777 LCKSQKIFEANKL 789 (1012)
Q Consensus 777 ~~~~g~~~~A~~~ 789 (1012)
|...|+...+..-
T Consensus 116 ~~~~g~~~~a~~~ 128 (172)
T PRK02603 116 YHKRGEKAEEAGD 128 (172)
T ss_pred HHHcCChHhHhhC
Confidence 7777765554433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.32 Score=54.06 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 001797 450 KPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK-GVLP--------DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLK 520 (1012)
Q Consensus 450 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 520 (1012)
.|.+..|..|...-.+.-.++-|...|-+...- |+.. +...-..-+.+| -|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466667776666655555666666655443321 1110 001111112232 478889988887776652
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 001797 521 PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN----DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTY 596 (1012)
Q Consensus 521 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 596 (1012)
..+..+.+.|++-...++++.- |-..| ..+|+.+.+.+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2355666778887766665431 11111 357888888888888888888887654321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 001797 597 SVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKS 676 (1012)
Q Consensus 597 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 676 (1012)
...+.++.+...+++-..+-..+.+ +....-.+.+.+...|.-++|.+.|-+. + .|. ..+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHH
Confidence 2345566666666655554444332 4455666777788888888877666432 2 111 334556666
Q ss_pred CCHHHHHHHHHHH
Q 001797 677 GELERARELFDGI 689 (1012)
Q Consensus 677 g~~~~A~~~~~~~ 689 (1012)
+++.+|.++-+..
T Consensus 892 nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00017 Score=46.20 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLK 308 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 308 (1012)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00077 Score=53.20 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-cHHHHHHHHHHHHh
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ-KIFEANKLLEDMAD 795 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 795 (1012)
+..+|..+...+...|++++|+..|+++++.+|....++..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777 67777777777665
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=59.32 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=42.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNI 958 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~ 958 (1012)
.-+...|++++|..+|+-+.-.+ +.++..|..|+.++...+++++|+..|..+.. +.+++|......+. +...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCH
Confidence 33444555555555555444443 33444455555555555555555555555443 33333333333322 4455555
Q ss_pred HHHHHHHHHHHH
Q 001797 959 DKATRFLESMIK 970 (1012)
Q Consensus 959 ~~A~~~~~~~~~ 970 (1012)
++|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0036 Score=65.33 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCR-DGNMEKALSLFLEMVQKGLASTSSFNALLNGL 777 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 777 (1012)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|..+|+..++..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777777777788888888777532 2234455555444333 45666688888887777777777777777777
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 778 CKSQKIFEANKLLEDMADKHITPNH---VTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.+.|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777664 33322 3677777777777777777777777766
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00075 Score=52.48 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
...+...|++++|+..|+++++..|.+..++..++.++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0092 Score=60.02 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAG---TMKDAEHLLVEMQK 830 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 830 (1012)
.-++.-+..+|.+...|..|+..|...|+...|...|.+..+. -++++..+..+..++.... ...++..+|++++.
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3344445555555555666666666666666665555555543 2234444444444432211 23445555555554
Q ss_pred CCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 831 RVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 831 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
. -+.|..+...|...+...|++.+|...++.|++
T Consensus 222 ~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 222 L-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2 122333444444555555555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=53.13 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILI 949 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 949 (1012)
..|...+++++|.+.+++++..+ |.++..|...+.++...|++++|.+.++++++ ..|+++....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHHH
Confidence 45677788888888888888775 66777777788888888888888888888777 567666655443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00028 Score=45.09 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFG 343 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (1012)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44445555555555555555554444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=67.72 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 001797 276 PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDL--KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNA 353 (1012)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (1012)
-+.+....+++.+....+++++..++.+.... ...--..|..++|..|.+.|..++++.++..=...|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35666777788877778888888888888764 1222334567888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 001797 354 LIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396 (1012)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 396 (1012)
|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888776666666766666665544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.33 Score=51.23 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 001797 698 VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNG 776 (1012)
Q Consensus 698 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 776 (1012)
...|...++.-.+..-++.|..+|-+..+.+ +.++..++++++.-+ ..|+..-|..+|+.-+...++++.-.+.....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4566777777777777888888888888877 556667788887755 45778888888888888777777555666667
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 777 LCKSQKIFEANKLLEDMADKHITPN--HVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 777 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
+...++-+.|..+|+..+++ +..+ ...|..+++.-..-|++..+..+-+++.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77788888888888866543 3333 45788888888888888888888777765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0037 Score=67.63 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF--GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYN 387 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 387 (1012)
+.+.+....+++.+....+++++..++-+.... ....-..|..++|..|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555556666665556666666666555442 111122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 388 SLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544454554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.038 Score=54.68 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDKGLVP--DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK 675 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 675 (1012)
.....+...|++.+|...|+.+....+.. .......++.++.+.|++++|...++++++..+......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 33444555666666666666665442211 1233444555666666666666666666654322222222222211111
Q ss_pred c-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 676 S-------------GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 676 ~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
. +...+|...|+.++ .-|=......+|...+..+... + ...-..++.-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 0 11222333333332 2222333334444333333221 0 0011224455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 785 (1012)
|.+.|.+..|..-++.+++..|... .+...++.+|.+.|..+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 6666777777777777777666655 455556666666666553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.005 Score=64.16 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
..+.+++-+|.+.+++.+|++..++++... |+|..++..-+.++...|+++.|+..|+++++ +.|++.....-+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 467788899999999999999999999998 78999999999999999999999999999999 899998877766664
Q ss_pred Hhc--CCHHHHHHHHHHHHH
Q 001797 953 YEA--GNIDKATRFLESMIK 970 (1012)
Q Consensus 953 ~~~--g~~~~A~~~~~~~~~ 970 (1012)
.+. ...+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 432 234556788888887
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=52.25 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=44.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTY 805 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 805 (1012)
...|++++|++.|+++++..|.+..++..++.+|.+.|++++|.++++++... .|+...|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 35677888888888888888887777778888888888888888888887763 4553333
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.26 Score=48.18 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCHHHHHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-----GVEPDGVIYSMM 878 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 878 (1012)
..++++..+.-.|.+.-...++.+..+...+.++.....|++.-.+.|+.+.|..+|+...+. ++.-...+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666666777777777777777544556667777777777888888888777755431 222223333444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
...+.-++++.+|...+.+++..+ +.++..-++-+-++.-.|+..+|++..+.+.+ ..|.+.....++-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence 456667778888888888888776 55677777777777778888888888888877 567776666555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0068 Score=63.33 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 665 TYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK-SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
+|..++....+.+..+.|+.+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555566666666555331 1122333333333222 34444466666655544 444445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 744 CRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
...++.+.|+.+|++.+..-+... ..|...+..-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666665555433222 3555555555555665555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0066 Score=62.04 Aligned_cols=93 Identities=6% Similarity=0.026 Sum_probs=56.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhcc
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEPD----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 920 (1012)
..+.|++++|+..|+..++. .|+ +..+..++.+|...|++++|...|+++++.. .+..+.++..++.++...
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 34456666777666666652 232 2455666677777777777777777776653 112345556666667677
Q ss_pred ccHHHHHHHHHHHhhCCCCCCHH
Q 001797 921 EEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
|++++|.+.|+++.+ ..|+..
T Consensus 231 g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 231 GDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred CCHHHHHHHHHHHHH--HCcCCH
Confidence 777777777777666 345544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.37 Score=49.11 Aligned_cols=220 Identities=19% Similarity=0.141 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCchhhHHHHHHHHHhcCcHHHHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQ--KGLASTSSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 787 (1012)
.+....+...+.......... ....+......+...+++..+...+..... ..+.....+..++..+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555432110 234555555666666667777666666665 34444456666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 788 KLLEDMADKHITPNHVTYTILID-YHCKAGTMKDAEHLLVEMQKRVLKP----NFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 788 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
+.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++++++...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 6666665532222 111222222 45566666666666666543 222 122233333334455666666666666
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 863 MVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 863 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+... ... ....+..+...+...+++++|...+....... +.....+..++..+...|+++++...+.+...
T Consensus 193 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 111 23445555555555666666666666665553 11234444444444444555666655555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.058 Score=59.08 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+++.....++|.+|..+.++..+
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcc
Confidence 44455556666666665555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.36 Score=47.23 Aligned_cols=130 Identities=13% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH-----HHHHH
Q 001797 666 YNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFV-----YCTLV 740 (1012)
Q Consensus 666 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~-----~~~l~ 740 (1012)
.+.++..+...|.+.-...+++++.++..+.+......+...-.+.|+.+.|...|++..+..-..|..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4456666666677777777777777765555666666677777777777777777775544322222222 22233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
..+.-.+++..|...+.+.+..++.++.+.|.-+-+..-.|+..+|.+.++.|+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556777777777777777777666666555555556777777777777766
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0072 Score=50.72 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 001797 319 LINGFMKQGNLQEAFRLKNEMVTFGI-KLNLFTYNALIGGICKAG--------EIEKAKGLMTEMLRLGINPDTQTYNSL 389 (1012)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 389 (1012)
.|.-++..|++..-..+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33334444444444444444444444 444444444444443321 122333444444444444444444444
Q ss_pred HHHH
Q 001797 390 IEGC 393 (1012)
Q Consensus 390 i~~~ 393 (1012)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.012 Score=49.34 Aligned_cols=85 Identities=12% Similarity=0.255 Sum_probs=63.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Q 001797 197 ILNDLLRANKLKLFWKVYDVMLEAKV-TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLV 275 (1012)
Q Consensus 197 ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~ 275 (1012)
.+..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..--.++. -.++-..+.+|+.|+..+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i---------e~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI---------ENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH---------HHHHHHHHHHHHHHHHhccC
Confidence 44555666888888888888888888 789999999988887644221111 01234678888899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 001797 276 PDCFTYSLMVDGFCK 290 (1012)
Q Consensus 276 p~~~~~~~li~~~~~ 290 (1012)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.84 Score=50.68 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY 811 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 811 (1012)
+..+|...++--...|+++...-+|+..+-....-+..|...+......|+.+-|..++....+-..+..+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34578888888888999999999999887765555677777888888889988888888777665444333322222223
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHccCChhHHH---HHHHHHHHcCCCCC--HHHHHHHH-HHHHh
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFR-TYTSLLHGYAGIGKRSEMF---ALFDEMVERGVEPD--GVIYSMMV-DAYLK 884 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~--~~~~~~l~-~~~~~ 884 (1012)
.-..|++..|..+++.+.+. . |+.. .-..-+....+.|+.+.+. .++....+....+. ...+...+ -.+.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 34578999999999998875 4 5443 2223345556778887777 44444333111221 11222222 22445
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc
Q 001797 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 921 (1012)
.++.+.|..++.++.+.- |++...|..+++....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 678899999999998874 778888888888776665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.52 Score=47.98 Aligned_cols=221 Identities=19% Similarity=0.132 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 677 GELERARELFDGIFAKGLTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432110 2344555555566666666666666665531 123333445555555556666666666
Q ss_pred HHHHHHHcCCCchhhHHHHHH-HHHhcCcHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 755 LFLEMVQKGLASTSSFNALLN-GLCKSQKIFEANKLLEDMADKHITP----NHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.+.......+.+......... .+...|++++|...+++... ..| ....+......+...++.++|...+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 666666655554333333333 56666666666666666644 222 22233333333455666666666666666
Q ss_pred HCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 830 KRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 830 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.. ... ....+..+...+...+++++|...+..... ..|+ ...+..+...+...|..+++...+.+.....
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 53 222 244555666666666666666666666664 2332 3334444444445555666666666666553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.096 Score=57.43 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 001797 191 LLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMI 270 (1012)
Q Consensus 191 ~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~ 270 (1012)
...+.+-+..+...|.+++|.++- ++.....-|.-+...-..+=+++-|++.+.+++++ .+=+-+.-++++.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL--RYLELISELEERK 627 (1081)
T ss_pred cccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 333444445566667766665431 12222233555555555555667777776666543 2223334455666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001797 271 HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKK 303 (1012)
Q Consensus 271 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (1012)
++|-.|+.+.. .+.++-.|++.+|.++|.+
T Consensus 628 ~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 628 KRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 77777776543 3445557777777777754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0091 Score=61.06 Aligned_cols=85 Identities=14% Similarity=0.011 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 001797 746 DGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHI--TPNHVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 820 (1012)
.|++++|+..|+.+++..|.+. .++..++..|...|++++|...|+.+++... +.....+..++..+...|+.++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444432 3444444444444444444444444443210 0012233333334444444444
Q ss_pred HHHHHHHHHH
Q 001797 821 AEHLLVEMQK 830 (1012)
Q Consensus 821 A~~~~~~~~~ 830 (1012)
|...|+++.+
T Consensus 236 A~~~~~~vi~ 245 (263)
T PRK10803 236 AKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.41 Score=46.45 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 736 YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA 815 (1012)
Q Consensus 736 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 815 (1012)
|..-..+|....++++|...+.++.+-.-.+ .++.-- .+.++.|.-+.+++.+ ++.-...|+.-...|...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnn-rslfhA------AKayEqaamLake~~k--lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENN-RSLFHA------AKAYEQAAMLAKELSK--LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-ccHHHH------HHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHh
Confidence 4444556666677777777666665321111 111111 1112223333333322 111122334444556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHH
Q 001797 816 GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-----DGVIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 890 (1012)
|..+-|-..+++.-+. .+.-++++|+.+|++...--... ..+.+.....+|.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 6666655555544321 11223344444444443210000 11234444566777777777
Q ss_pred HHHHHHHHHHc-----CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 891 TIKLVDEMFLR-----GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKE--IKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 891 A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
|-..+.+-... ..+.-...+...+-.+.-..++..|.+.++.--+-+ ..|++......+-..+..|+.+++.+
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKK 248 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHH
Confidence 77766554332 122234556667777777888999998888754322 22333222222223567888888777
Q ss_pred HHHH
Q 001797 964 FLES 967 (1012)
Q Consensus 964 ~~~~ 967 (1012)
++..
T Consensus 249 vl~s 252 (308)
T KOG1585|consen 249 VLSS 252 (308)
T ss_pred HHcC
Confidence 6554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=55.42 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=55.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-hcChHHHHHHHHHHHhCCCCCCHHHH
Q 001797 203 RANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEK-VGAIDEAFELKESMIHKGLVPDCFTY 281 (1012)
Q Consensus 203 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~ 281 (1012)
+.|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--+ ..+-+-|++++++|...|+.||..++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~ 141 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETE 141 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 356667777778889999999999999999998876 4332 23344433222 22334566666666666666666666
Q ss_pred HHHHHHHHh
Q 001797 282 SLMVDGFCK 290 (1012)
Q Consensus 282 ~~li~~~~~ 290 (1012)
..+++.|.+
T Consensus 142 ~~ll~iFG~ 150 (228)
T PF06239_consen 142 QMLLNIFGR 150 (228)
T ss_pred HHHHHHhcc
Confidence 666666633
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=50.51 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHH
Q 001797 638 FCKQGFIKEAFQLHEKMCESG--ITPNIVTYNALIDGLCKSGELERARELFDGIFAK--GLTPT---VVTYTTIIDGYCK 710 (1012)
Q Consensus 638 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~~~ 710 (1012)
+....+.++|+..+.+-+.+- ...-..++..+..+.+..|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666554431 1112334555556666666666554433222211 00111 1223333333333
Q ss_pred cCCHHHHHHHHHHhhhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--Cch----hhHHHHHHHHHhc
Q 001797 711 SGNLTEAFQLVNEMPSR-GVTPD---NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL--AST----SSFNALLNGLCKS 780 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~-~~~pd---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~ 780 (1012)
.-++.+++.+-..-... |..|. ......+..++...+.++++++.|+.+.+... .++ .++..|+..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333443333322111 11221 11233344455555556666666665544211 111 4555566666666
Q ss_pred CcHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-ChHHHHHHHHH
Q 001797 781 QKIFEANKLLEDMAD----KHITPNHVTY-----TILIDYHCKAGTMKDAEHLLVEMQK----RVLKP-NFRTYTSLLHG 846 (1012)
Q Consensus 781 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~ 846 (1012)
.++++|.-+..+..+ .++..-..-| ..|.-++...|...+|.+.-++..+ .|..+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666665544444332 1111111112 2233334455555555555444332 22111 11122344555
Q ss_pred HHccCChhHHHHHHHHHH
Q 001797 847 YAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~ 864 (1012)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.83 Score=48.42 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKG-LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLV 740 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~ 740 (1012)
..+|..+++.-.+..-++.|+++|-++.+.+ +.+++..+++++..++ .|++.-|..+|+--... .||.. --...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4456677777777777899999999998877 6678888888888765 67888899999876553 34444 334556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLAS--TSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.-+...++-+.|..+|+..++.--.. ...|..++.--..-|+...+..+-+++.+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66678889999999999776643322 36777788877888888888877777766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.02 Score=52.45 Aligned_cols=86 Identities=10% Similarity=-0.115 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001797 813 CKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
...|++++|..+|+-+...+ .-+..-|..|+.++-..+++++|+..|..+...+. -|+......+.+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44555555555555444321 11333344444455555555555555554443221 13333444455555555555555
Q ss_pred HHHHHHHH
Q 001797 893 KLVDEMFL 900 (1012)
Q Consensus 893 ~~~~~~~~ 900 (1012)
..|+.+..
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.99 Score=51.88 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNE--VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
.-.-++.+++...++-|..+-.. .+..++. ...-..++-+.+.|++++|...+-+-+.. +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 44566777888888888776543 2323332 22333445567889999999888777643 2332 345556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001797 359 CKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGAC 438 (1012)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 438 (1012)
....++..-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-+++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6667777777888888888754 45555678888888888877766665443 2211 112445566666777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001797 439 RVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMT 480 (1012)
Q Consensus 439 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (1012)
-+-.+... +......++. ..+++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 66554432 3334444433 5678888888887664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0091 Score=47.63 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
..|.+.+++++|.++++.++..+|.++..+...+.++.+.|++.+|.+.+++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777663
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.034 Score=53.17 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCHhHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 310 NPNEVVYTTLINGFMKQ-----GNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
..+..+|..++..|.+. |.++=....+..|.+.|+..|..+|+.|++.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF 97 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence 34555555555555432 44444444445555555555555555555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.4 Score=51.11 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 906 NQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 906 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+.-.+.+++.+..-.|++++|.+++++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 444555666777777777777777777765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.068 Score=53.91 Aligned_cols=150 Identities=10% Similarity=0.030 Sum_probs=79.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYT----ILIDYHCKAGTMKD 820 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 820 (1012)
..|+..+|...++++++..|.+.-++..--.++.-.|+...-...+++++.. ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4566666666677777766666666666666666666666666666666543 233332221 22333445666666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD----GVIYSMMVDAYLKEGNMMKTIKLVD 896 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 896 (1012)
|++..++..+. .+.|.....++.+.+...|+..++.++..+-.. ..+.. ...|-+.+-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666665543 122444555566666666666666665544322 11100 0112223333445556666666665
Q ss_pred H
Q 001797 897 E 897 (1012)
Q Consensus 897 ~ 897 (1012)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.64 Score=46.10 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++..|.+.|.+..|..-++.+++. .+.. ...+..+..+|...|-.++|.+.-.-+.. ..|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~--N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA--NYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCCc
Confidence 456677777777777777777776 2322 34455566777777777777777666654 355544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.5 Score=47.37 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH-CCCccChhHHHHhhhhhhcccccccccccHHHHH
Q 001797 958 IDKATRFLESMIK-FGWVADSTVMMDLVKQDQNDANSENTSNSWKEAA 1004 (1012)
Q Consensus 958 ~~~A~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1012)
...+.++++.+.. .| .+..-|...++-...++.++++...+|-|.
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 5667788888776 66 788888888888888888888887777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=61.17 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG----VIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+...++.++.+|.+.|++++|+..|+++++ +.|+. ..|++++.+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777777777777777777775 55543 24677777777777777777777777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0064 Score=49.30 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--Cc---cC-HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRG--LV---LN-QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
++..++.+|...|++++|++.++++++.. .+ ++ ..++..++.++...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555666666666666666666655431 01 11 34556666666666666666666666543
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.14 Score=55.19 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 854 SEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 854 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
.+|.++.+.+++ +.| |+.....++.++.-.|+++.|..+++++...+ |..+.+|...+..+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555554 333 44445555555555555666666666666554 44455555566666666666666666666
Q ss_pred HhhCCCCCCH
Q 001797 933 MGDKEIKLSH 942 (1012)
Q Consensus 933 ~~~~g~~p~~ 942 (1012)
+.+ +.|..
T Consensus 398 alr--LsP~~ 405 (458)
T PRK11906 398 SLQ--LEPRR 405 (458)
T ss_pred Hhc--cCchh
Confidence 554 44543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.039 Score=54.95 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHhhhhC
Q 001797 106 FSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDG 185 (1012)
Q Consensus 106 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~ 185 (1012)
.+-.+.-+..+|+|..|...|..++..+|... ..+.++.-|+.++...|++++|...|..+.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 34455667788999999999999999888643 355778889999999999999999999997776
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001797 186 GSVPGL-LCCNSILNDLLRANKLKLFWKVYDVMLEA 220 (1012)
Q Consensus 186 ~~~~~~-~~~~~ll~~l~~~~~~~~a~~~~~~m~~~ 220 (1012)
+-.|.. .+.-.|..++.+.|+.++|...|+++.+.
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666654 66777778888888888888888888765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.35 Score=52.27 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=31.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVER-GVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.|..++-+.|+.+||++.++++++. .......+...|+.+|...+.+.++..++.+--+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3455555556666666666665541 11112234445556666666666666666554433
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=2.7 Score=48.79 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc---CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKS---QKIFEANKLLEDMADKHITPNHVTYTILIDYHC----KAGTMKD 820 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~ 820 (1012)
+.+.|..++.+..+.+..+. ...++.+|... .+...|.++|....+.|. ...+-.+..+|. -..+.+.
T Consensus 308 d~~~A~~~~~~aA~~g~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cHHHHHHHHHHHHhcCCchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHH
Confidence 45566666666666554333 22233333322 345677777777766552 222223333222 2236777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHh----cCChHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVD---AYLK----EGNMMKTIK 893 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~----~g~~~~A~~ 893 (1012)
|..++.+..+.| .|...--......+.. ++++.+.-.+..+.+.+.+--...-..+.. .... ..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 888887777765 3322222223333333 667766666666665444321111111111 1111 236777888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhcc----ccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 001797 894 LVDEMFLRGLVLNQNVYTSLANSLCKE----EEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAG----NIDKATRFL 965 (1012)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~ 965 (1012)
.+.+....| +......|++.|..- .+++.|...|..+..++ ....+.+..+++.| ++..|.+++
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 888888887 777888888877655 45888998888887643 33444444454433 267888888
Q ss_pred HHHHHCC
Q 001797 966 ESMIKFG 972 (1012)
Q Consensus 966 ~~~~~~g 972 (1012)
+.....+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 8877644
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.078 Score=52.87 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHIT--PNHVTYTILI 809 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 809 (1012)
.|+.-+.. .+.|++..|...|...++..|.++ .++..|+..+...|++++|...|..+.+.... .-+.++..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555544 467788899999998888888766 78888888888888888888888888764211 1345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 001797 810 DYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888888888888888774
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.12 Score=52.82 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001797 673 LCKSGELERARELFDGIFAK--GLTPTVVTYTTIIDGYCKSGNLTEAFQL 720 (1012)
Q Consensus 673 ~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l 720 (1012)
+....+.++|+..|.+.+.+ +...-..++..+..+.++.|++++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 45567777777777777654 1111223555666677777777766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.47 Score=50.54 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHcCCCchhhHHHHHH
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRG---VTPDNFVYCTLVDGCCR---DGNMEKALSLFLE-MVQKGLASTSSFNALLN 775 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~---~~pd~~~~~~l~~~~~~---~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~ 775 (1012)
.++-.|....+++..+++++.+...- +.-...+-..++-++.+ .|+.++|+.++.. +...+...+.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666777777777777766420 00011122233334444 6666666666666 33333444455655555
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChh-
Q 001797 776 GLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRS- 854 (1012)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~- 854 (1012)
.|-.. |. +.+ ..+ ....++|+..|.+.-+ +.|+...=..++..+...|...
T Consensus 226 IyKD~---------~~---~s~-~~d-------------~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------FL---ESN-FTD-------------RESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------HH---HcC-ccc-------------hHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCccc
Confidence 54321 00 000 001 1125566666665543 2344332222222222233211
Q ss_pred ---HHHHHH---HH-HHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 855 ---EMFALF---DE-MVERGV---EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 855 ---~A~~~~---~~-~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
+..++- .. ..+.|. ..+-..+..++.+..-.|+.++|.+.+++|....
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 222221 11 112222 2244556677788888899999999999998774
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.93 Score=44.97 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
.+...|.+.|.+..|..-+++|++. .+.. ...+-.+..+|...|..++|.+.-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4556678888888888888888774 2222 2245566777888888888877655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.7 Score=45.42 Aligned_cols=62 Identities=21% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 735 VYCTLVDGCCRDGNM---EKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
++..++.+|...+.. ++|..+.+.+....++.+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455556666555543 34555666665666665666655555555566677777777776654
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.058 Score=46.39 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=66.2
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCK 919 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 919 (1012)
.-+....|+.+.|++.|.+.+. +-| .+..|++-+.++.-.|+.++|++-++++++..-+.. ...|..-+..|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456677888888888888875 444 567788888888888888888888888887742222 3445566677778
Q ss_pred cccHHHHHHHHHHHhhCC
Q 001797 920 EEEFYKVLKLLDEMGDKE 937 (1012)
Q Consensus 920 ~g~~~~A~~~~~~~~~~g 937 (1012)
.|+.+.|..-|+.+.+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 888888888887777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.44 Score=48.05 Aligned_cols=122 Identities=10% Similarity=0.082 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDA 821 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 821 (1012)
.....|++.+|...|..+....+....+...++.+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44567888888888888888888777777888888888888888888877753321111111111222333333333333
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
..+-+++-. .+.|...-..+...+...|+.++|.+.+=.+++
T Consensus 223 ~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333321 112444444555555555555555555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.068 Score=56.05 Aligned_cols=141 Identities=15% Similarity=0.051 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGI 850 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 850 (1012)
..-++.|.+.|++..|...|++++.. +. |.+.-+.++..... . .-..++..|.-+|.+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKL 270 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhh
Confidence 34577888888888888888876542 00 11111112221111 1 1223567788889999
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH-HH
Q 001797 851 GKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV-LK 928 (1012)
Q Consensus 851 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 928 (1012)
+++.+|+..-++.++ ..| +....+.-+.+|...|+++.|+..|+++++.. |.|..+-..|+.+-.+..++.+. .+
T Consensus 271 ~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 444 77788888899999999999999999999987 77788888888777777666655 67
Q ss_pred HHHHHhh
Q 001797 929 LLDEMGD 935 (1012)
Q Consensus 929 ~~~~~~~ 935 (1012)
+|..|..
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 8888875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.018 Score=46.58 Aligned_cols=62 Identities=13% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVER--GVEP---D-GVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+|+.++..|...|++++|+..|+++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666541 1111 1 34566666777777777777777776654
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.46 Score=48.26 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH----HHHHHHHHccCC
Q 001797 777 LCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY----TSLLHGYAGIGK 852 (1012)
Q Consensus 777 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~ 852 (1012)
....|+..+|...++++++. .+.|..++...-+++.-.|+...-...++++... ..||...| ..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34455666666666666653 4445555555556666666666666666665543 23333222 123344455666
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CccCHHHHHHHHHHHhccccHHHHHH
Q 001797 853 RSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG---LVLNQNVYTSLANSLCKEEEFYKVLK 928 (1012)
Q Consensus 853 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 928 (1012)
+++|.+..++..+ +.| |......+...+...|+..++.++..+-...- .-.-...|-..+-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 6666666666554 333 44444455555556666666666655443321 00112334444555555566666666
Q ss_pred HHHH
Q 001797 929 LLDE 932 (1012)
Q Consensus 929 ~~~~ 932 (1012)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 6655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.2 Score=46.55 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh-----hCCCCCCHHHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG-----DKEIKLSHATC 945 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~ 945 (1012)
....++..+...|++++|...+++++... |.+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556677788888888888888888886 7788888888888888888888888888764 34777776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.69 Score=44.02 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
++|..|+.-+...|+.++|..+|+-+....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456666666777777777777777666553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.27 Score=53.10 Aligned_cols=154 Identities=10% Similarity=0.025 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHH---HcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 748 NMEKALSLFLEMV---QKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHL 824 (1012)
Q Consensus 748 ~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 824 (1012)
..+.|..+|.+++ +.+|....+|..++.++...- -.|..+ ......+|.++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-------------~~g~~~-------------~~~~~~~a~~~ 326 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-------------LHGKSE-------------LELAAQKALEL 326 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-------------HhcCCC-------------chHHHHHHHHH
Confidence 3567788888888 666666677766666554210 000100 12234455556
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 001797 825 LVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL 903 (1012)
Q Consensus 825 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 903 (1012)
.++..+. -+.|+.....++.+....|+++.|..+|+++.. +.|+ ..+|...+..+.-.|+.++|.+.+++++...
T Consensus 327 A~rAvel-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs- 402 (458)
T PRK11906 327 LDYVSDI-TTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE- 402 (458)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 6666553 233566666666666666667777777777664 5553 3455556666666677777777777766664
Q ss_pred ccC--HHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 904 VLN--QNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 904 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
|.. ..+....++.|+. ...++|+++|-+
T Consensus 403 P~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 211 1222222333333 335556665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2 Score=49.49 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.++..+++..+.+.+..+.+..-+ .++..|..++..+.+.+..+...+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355566667777777776666533 267777888888887776665555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.099 Score=46.82 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc---cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 872 GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV---LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 872 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
+..+..-+....+.|++++|++.++.+..+- | -...+...|+.+|.+.|++++|+..+++.++ +.|+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCC
Confidence 3445555666678888888888888888773 3 3356777788888888888888888888887 6776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.17 Score=47.01 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEM 339 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (1012)
...++..+...|++++|..+...+.... |-|...|..+|.+|...|+..+|++.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344455555666666666666665543 445555666666666666666666655555
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.082 Score=56.86 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS---SFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.++.+..+|...|++++|+..|+++++.+|.+.. +|+.++.+|...|+.++|++.+++.++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554442 255555555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.39 Score=54.28 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChhHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhcCChHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYT-SLLHGYAGIGKRSEMFALFDEMVER--GVEP-DGVIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 890 (1012)
....+.|.+++..+.+. -|+...|. .-++.+...|+.++|++.|+++.+. ..+. ....+.-+++++.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34556666666666653 34444443 3345556667777777777665431 1111 22334455666667777777
Q ss_pred HHHHHHHHHHcCCccCHHHHHH-HHHHHhccccH-------HHHHHHHHHHh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTS-LANSLCKEEEF-------YKVLKLLDEMG 934 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~ 934 (1012)
|.+.+.++.+.. .-+...|.. .+-++...|+. ++|.+++.++.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777777777664 112222222 33445556666 66666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=4.2 Score=45.43 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 662 NIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVD 741 (1012)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~ 741 (1012)
+..+|...++.-.+.|+.+....+|+...-- +..=...|--.+.-....|+.+-|..++....+--.+....+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567778888888889999888888887642 111223344445555556888888777766554433323333222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHH---HHHHHHHhCCCCCCHH--HHHHHHHH-HHhc
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEAN---KLLEDMADKHITPNHV--TYTILIDY-HCKA 815 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~~-~~~~ 815 (1012)
.+-..|++..|..+++.+.+..|....+-..-+....+.|+.+.+. +++....+....+... .+...+.. +.-.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 3345678899999998888877554455556666777788888877 4444443322222111 11122221 2335
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC
Q 001797 816 GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIG 851 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 851 (1012)
++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6788888888888775 5666667777776665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.27 Score=46.01 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=76.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPD-----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
++-+.+.|++++|..-|.++++. .+|. ...|.+-+-++.+.++++.|++-..++++.+ |....+...-+.+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 34567788888888888888873 2221 2345555677888999999999999999887 434555566677888
Q ss_pred ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 919 KEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+..++++|++-|+++++ +.|......-.+..
T Consensus 180 k~ek~eealeDyKki~E--~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcchHHHHHHHHh
Confidence 99999999999999988 67876655544443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.45 Score=53.77 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------HHHHHHHHHH----ccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR------TYTSLLHGYA----GIGKRSEMFALFDEMVERGVEPDGVIYS 876 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 876 (1012)
.++....-.|+-+.+++++.+..+.+---.+. .|...+..++ .....+.|.+++..+.+ .-|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHH
Confidence 45555556677777777776655421111111 2222232222 24577889999999986 456655554
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcC--Cc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 001797 877 -MMVDAYLKEGNMMKTIKLVDEMFLRG--LV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS- 951 (1012)
Q Consensus 877 -~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~- 951 (1012)
.-+..+...|+.++|++.++++.... .+ .....+..++.++.-.++|++|.+.+.++.+. ..-+...|.++.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 44588889999999999999877521 11 33456777999999999999999999999874 34455555555555
Q ss_pred HHhcCCH-------HHHHHHHHHHHH
Q 001797 952 VYEAGNI-------DKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~-------~~A~~~~~~~~~ 970 (1012)
+...|+. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7788888 888888888776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=39.29 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 913 (1012)
+..++..|...|++++|+++++++++.. |.|..+|..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 3444444555555555555555555443 4444444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.19 Score=43.32 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH---VTYTILIDYHCKAGTM 818 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 818 (1012)
+....|+.+.|++.|.+.+...|..+.+||.-+.++--+|+.++|++-+++.++..-.... ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3456677777777777777777777777777777777777777777777776653211111 2333444455566666
Q ss_pred HHHHHHHHHHHHCC
Q 001797 819 KDAEHLLVEMQKRV 832 (1012)
Q Consensus 819 ~~A~~~~~~~~~~~ 832 (1012)
+.|..-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.6 Score=41.16 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
..|-.-..+|-...++++|...+.+..+. ...|...|. ....++.|.-+.+++.+. +--+..|+.-..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555556777788888888888777642 122222221 123456666666666543 22234455666778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHhcCC
Q 001797 359 CKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKR---N--LSPTAYTCNVIINGLCRCSD 433 (1012)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g~ 433 (1012)
..+|..+-|-..+++..+. ..+-++++|+++|++.... + ...-...+....+++.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888887777776542 2344555555555554321 1 00011223344455556666
Q ss_pred HHHHHHHHHHHHHCCC----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001797 434 LEGACRVFEEMIACGL----KPNN-FVYTTLIQAHLRQNRFEEAINILKGM 479 (1012)
Q Consensus 434 ~~~A~~~~~~~~~~g~----~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (1012)
+++|-..|.+-..... -++. ..|-..|-.+.-..++..|...++..
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 6665544443221100 0111 12333444444455666666666553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.50 E-value=7.4 Score=46.06 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=97.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCh
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHI-TPN-------HVTYTILIDYHCKAGTMKDAEHLLV--------EMQKRVLKPNF 837 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 837 (1012)
+...+-.+++..|...++.+.+..- .|+ +..+...+-.+-..|+.+.|+..|. .....+...+.
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 3444567899999999988875321 111 2222223333446799999999997 33333333333
Q ss_pred HHHHH--HHHHHHccCC--hhH--HHHHHHHHHH-cCCCC--CHHHHHHHH-HHHHh--cCChHHHHHHHHHHHHcC---
Q 001797 838 RTYTS--LLHGYAGIGK--RSE--MFALFDEMVE-RGVEP--DGVIYSMMV-DAYLK--EGNMMKTIKLVDEMFLRG--- 902 (1012)
Q Consensus 838 ~~~~~--l~~~~~~~g~--~~~--A~~~~~~~~~-~~~~p--~~~~~~~l~-~~~~~--~g~~~~A~~~~~~~~~~~--- 902 (1012)
.++.. ++..+...+. .++ +.++++.+.. ..-.| +..++..++ .++.. .-...++...+.+.++..
T Consensus 448 ~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~ 527 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNK 527 (608)
T ss_pred HHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHh
Confidence 33332 2233333332 222 5556665443 11222 233444443 33321 112335655555544432
Q ss_pred CccC---HHHHHHHHHHHhccccHHHHHHHHHHHhhCC-CCCCHHHHHH------HHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 903 LVLN---QNVYTSLANSLCKEEEFYKVLKLLDEMGDKE-IKLSHATCCI------LISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 903 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~------ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
...+ ...++.++..+. .|+..+..+......... -.|+.....| ++.. +..+|+.++|.....+..+
T Consensus 528 ~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 528 LGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0111 223444555555 777777666555543211 1244444433 2222 5678999999998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.033 Score=38.93 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
.+|..++..|...|++++|++.++++++ ..|+++..+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 4788999999999999999999999998 7899988776654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.8 Score=40.13 Aligned_cols=181 Identities=14% Similarity=0.030 Sum_probs=109.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-VTYTILIDYHCKAGTMKDA 821 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 821 (1012)
|-..|-+.-|+--|.+.+...|+-+.++|.|+--+...|+++.|.+.|+...+. .|.. .+..+-.-++.-.|+++-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence 345566777788888888999999999999999999999999999999999884 4422 2222222234457899988
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHH--ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYA--GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
.+-+.+.-+. -+.|+ |.+ ++.|. ..-++.+|..-+.+=.+ +...+..-|+ ++..|...=..+ .+++++.
T Consensus 153 q~d~~~fYQ~-D~~DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~-iV~~yLgkiS~e---~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQD-DPNDP--FRS-LWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWN-IVEFYLGKISEE---TLMERLK 223 (297)
T ss_pred HHHHHHHHhc-CCCCh--HHH-HHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHH-HHHHHHhhccHH---HHHHHHH
Confidence 8877766553 22233 222 22332 23356666654443222 2322222232 223332221222 2223332
Q ss_pred HcCCccC-------HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 900 LRGLVLN-------QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 900 ~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
... ..+ ..+|..|+.-+...|+.++|..+++-+..
T Consensus 224 a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 224 ADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 221 111 35677788888889999999988887765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.30 E-value=15 Score=48.29 Aligned_cols=316 Identities=9% Similarity=0.041 Sum_probs=164.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001797 563 TLIDGHCKEGNVKEAFSTFRCM----LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF 638 (1012)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 638 (1012)
.+..+-.+.+.+..|.-.++.- .+. .....-|..+...|...++++....+...-.. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4555666778888888888873 221 11223344455588888888887777664221 122 23345556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 001797 639 CKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTI-IDGYCKSGNLTEA 717 (1012)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A 717 (1012)
...|++..|...|+.+.+.+ ++....++.++......|.++......+..... ..+....|+.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999998764 234667777777777778888877766666543 22333333332 2333566677766
Q ss_pred HHHHHHhhhCCCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHc--------CCCch--hhHHHHHHHHHhcCcH
Q 001797 718 FQLVNEMPSRGVTPDNFVYCT--LVDGCCRDG--NMEKALSLFLEMVQK--------GLAST--SSFNALLNGLCKSQKI 783 (1012)
Q Consensus 718 ~~l~~~~~~~~~~pd~~~~~~--l~~~~~~~g--~~~~A~~~~~~~~~~--------~~~~~--~~~~~l~~~~~~~g~~ 783 (1012)
..... .. +..+|.. ++....+.. +.-.-.+..+.+.+. ..... ..|..+...+.-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 65544 11 1112222 222222111 111111122222111 11111 3344444333221111
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----ChHHHHHHHHHHHccC
Q 001797 784 FEANKLLEDMADKHITPNH------VTYTILIDYHCKAGTMKDAEHLLVE-MQKRVLKP-----NFRTYTSLLHGYAGIG 851 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g 851 (1012)
... +... +..++. .-|..-+..-....+..+-+--+++ +......| -..+|...++...+.|
T Consensus 1611 ~~~----~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1611 NSI----EELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHH----HHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 111 1110 112211 1222222111111112222222222 11111122 2447888888888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 001797 852 KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV 904 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 904 (1012)
+++.|...+-.+.+.+ . +..+.-.+..+...|+...|+.++++.++...+
T Consensus 1685 ~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999998887777643 3 345566778888999999999999999877543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.55 Score=42.20 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
..+.|++++|++.|+.+....|.+. .+...|+.+|.+.|++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666666666666666655444 45555666666666666666666666664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.2 Score=43.28 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=89.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGK 852 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 852 (1012)
-+......|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..+....-.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3444567888888888888887752 334456667888888999999999888876542111112222223344444555
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccc
Q 001797 853 RSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 853 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 921 (1012)
..+...+-.+.. -.| |...-..++..+...|+.++|.+.+-.++.++.. .|..+-..|+..+..-|
T Consensus 219 ~~~~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 554444444443 345 6667777788888888888888887777776322 34444555555444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.6 Score=40.02 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHH------HHHHHhc
Q 001797 851 GKRSEMFALFDEMVER--GVEPDG---VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTS------LANSLCK 919 (1012)
Q Consensus 851 g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~~~ 919 (1012)
.++++|+..|+++.+. |-..+. ..+...+..-...+++.+|+++|+++....+..+..-|.. -+-++..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5677777777777662 212121 2222333444567889999999999887754433322322 2333444
Q ss_pred cccHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 920 EEEFYKVLKLLDEMGDKEIKLSHATC--CILISSVYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 920 ~g~~~~A~~~~~~~~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~ 971 (1012)
.++.--+...+++-.+ +.|.-... .-++..+...=+-.+...+-+.+.+.
T Consensus 208 ~~D~v~a~~ALeky~~--~dP~F~dsREckflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred cccHHHHHHHHHHHHh--cCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4676667777777766 56754332 33444554433333344444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.6 Score=40.16 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=82.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFR-TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGV---IYSMMVDAYLKEGN 887 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 887 (1012)
+.+.|..++|+.-|..+.+.|...=+. ............|+..+|...|.++-.....|... .-..-...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345677777777777777654432111 22233445567788888888888876533333221 11122355677788
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
+++...-.+.+...+-|.....--.|+-+-.+.|++.+|.++|..+......|.+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 88877777777666644445556667778888888888888888876544455443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.3 Score=37.18 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=81.4
Q ss_pred hcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChH
Q 001797 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTY---TSLINAHFRAGNVK 243 (1012)
Q Consensus 167 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~ 243 (1012)
-.|.+++..++....+.. .+..-+|.++.-...+-+-+-..++++.+-. -.|.... -.++.+|.+.|...
T Consensus 14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH
Confidence 357777788888776432 4556666666666655555555555555532 2333332 34566666655432
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 001797 244 AAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGF 323 (1012)
Q Consensus 244 ~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (1012)
.-...-++.+.++|+-+.-.+++.+..+.+ .+++.....+..+|
T Consensus 87 -----------------------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay 130 (161)
T PF09205_consen 87 -----------------------------------EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAY 130 (161)
T ss_dssp -----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHH
Confidence 223445667778888888888888887643 67788888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCC
Q 001797 324 MKQGNLQEAFRLKNEMVTFGIK 345 (1012)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~ 345 (1012)
.+.|+..+|.+++.++-+.|++
T Consensus 131 ~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 131 KKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHhcchhhHHHHHHHHHHhchH
Confidence 9999999999999999888854
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.9 Score=40.70 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhc
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS--VYEA 955 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~--~~~~ 955 (1012)
..+...|++++|...++..+......+ ..+-..|+.+....|.+++|.+.++.... ++.......+++ +...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHHHc
Confidence 555666666666666666654420000 12222355666666666666666655432 222333333333 5666
Q ss_pred CCHHHHHHHHHHHHHCCCccChhHHH
Q 001797 956 GNIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
|+.++|+.-|+..+...-.|....+.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~~~~~l 198 (207)
T COG2976 173 GDKQEARAAYEKALESDASPAAREIL 198 (207)
T ss_pred CchHHHHHHHHHHHHccCChHHHHHH
Confidence 66666666666666655444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.73 E-value=6.9 Score=41.53 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 704 IIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 704 li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
.|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+... ..+|-.|...+..+.+.|+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCH
Confidence 3444556666666666655553 35666666677777777777665554321 23345555666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 784 FEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLL 825 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 825 (1012)
.+|..+..++ + +..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666665552 1 123445566666666666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.033 Score=36.15 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHH
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 787 (1012)
|+++++.+|.+..+|+.|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56778888888888888888888888888875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.6 Score=44.92 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 780 SQKIFEANKLLEDMADKHITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 780 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
..+.+.-++.-.+.++ +.|+.. .|..|. --......+|++++++..+.|- ..+..- ......|.
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~------ 245 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH------ 245 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc------
Confidence 3344444455555554 445443 232222 2234557888888888776431 011000 00011111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhC
Q 001797 859 LFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 859 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.++........|-..+-..++.++.+.|+.+||++.++.+.+.... .+-.+...|+.++...+.+.++..++.+-.+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1122222233344445567889999999999999999999987422 24568889999999999999999999997653
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.7 Score=41.01 Aligned_cols=92 Identities=8% Similarity=0.025 Sum_probs=67.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
+...+...|++++|..-++..+....+.+ ...-..|+......|.+++|++.++.....+ -.+.....-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence 45667788899999888888774222111 1223356678888999999999988877665 2445566678889999
Q ss_pred ccHHHHHHHHHHHhhC
Q 001797 921 EEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~ 936 (1012)
|+.++|+..|++.++.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 9999999999998874
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=11 Score=43.25 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001797 632 SSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKS 711 (1012)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 711 (1012)
+--+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-.++-++.. .+..|..++..|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333444556666677766665543 4566666666667777777776555443332 234555666677777
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
|+.++|.+++.+... .. -...+|.+.|++.+|.++
T Consensus 758 ~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 777777776665432 11 345566666666666554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=8.5 Score=41.70 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCccChhHH
Q 001797 907 QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL-SHATCCILISSV--YEAGNIDKATRFLESMIKFGWVADSTVM 980 (1012)
Q Consensus 907 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 980 (1012)
...+..|+.+++-+|++++|...+..+.. +-| ..+.-..+++.| .+.|+...|...+++-....++|....+
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aat--l~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~ev 693 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAAT--LLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEV 693 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH--hhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccCcchhh
Confidence 35677899999999999999999977654 222 222233344455 4789999999988887777777765544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=7.1 Score=45.42 Aligned_cols=128 Identities=14% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCccCHHHHH
Q 001797 840 YTSLLHGYAGIG-----KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE---GNMMKTIKLVDEMFLRGLVLNQNVYT 911 (1012)
Q Consensus 840 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 911 (1012)
...++.+|.+.. +.+.|..++.+..+.|.+ + ....++.++..- .+...|.++|..+...| ......
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~ 364 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIY 364 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHH
Confidence 344444444422 444566666665553321 2 222233333222 23456666666666665 333333
Q ss_pred HHHHHHh----ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 001797 912 SLANSLC----KEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVA 975 (1012)
Q Consensus 912 ~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 975 (1012)
.++.+|. -..+.+.|..+++++.+.| .|........+..+.. ++++.+.-.+..+...|+.-
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 3333322 2245566666666665544 2221111111111222 55555555555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.7 Score=37.82 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-HHHHH--HHHHHhcCChhHHH
Q 001797 258 AIDEAFELKESMIHKGLVPDCF-TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV-VYTTL--INGFMKQGNLQEAF 333 (1012)
Q Consensus 258 ~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~ 333 (1012)
+.++|+.-|..+.+.|...-.+ .--.........|+...|...|++.-.....|-.. -.-.| .-.+...|.|+...
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 3445555555555555543332 22233455677888888888888887654444332 11112 22345677787777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 334 RLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
...+.+...|-+.-...-..|.-+-.+.|++.+|.+.|+.+......|
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 777777665544445555666666677888888888888777543333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.13 E-value=9.3 Score=40.57 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001797 599 LIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678 (1012)
Q Consensus 599 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 678 (1012)
.+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-..+... .-++.-|-.++..|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555544442 34666666666666666666655443221 1123455566666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001797 679 LERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNE 723 (1012)
Q Consensus 679 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 723 (1012)
..+|..+...+ + +..-+..|.+.|++.+|.+...+
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666555541 1 12334555666666666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.06 Score=34.96 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhccccHHHHH
Q 001797 896 DEMFLRGLVLNQNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 896 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
+++++.. |.++.+|..|+.+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 445555555555555555555553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.78 E-value=19 Score=43.81 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH--HHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRT--YTSLLH 845 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~ 845 (1012)
..|.+.++.+...+.+++|.-.|+..-+. ...+.+|..+|++.+|..+..++.. ..+... -..|+.
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHH
Confidence 34444455555555555555555443210 1223445555555555555544431 112111 123444
Q ss_pred HHHccCChhHHHHHHHHH
Q 001797 846 GYAGIGKRSEMFALFDEM 863 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~ 863 (1012)
-+...+++-+|-++..+.
T Consensus 1008 ~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHcccchhHHHHHHHH
Confidence 455555555555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.098 Score=33.91 Aligned_cols=32 Identities=3% Similarity=0.200 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
..|..++.++...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3556666666666666666666666665 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.65 E-value=13 Score=40.59 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc--------
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP---DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL-------- 905 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 905 (1012)
..+|..++..+.+.|+++.|...+..+...+..+ .+......+..+...|+..+|+..++..+......
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3456666666666777776666666665422111 23334444555666666666666666665521110
Q ss_pred -------------------------CHHHHHHHHHHHhcc------ccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 906 -------------------------NQNVYTSLANSLCKE------EEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 906 -------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
-..++..++.-.... ++.+++.+.|.++.+ +.|+....+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHH
Confidence 022333444444444 777788888888877 67776665554444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.13 Score=33.42 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
.+|..++.++...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566666666666666666666666666 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.60 E-value=17 Score=41.85 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-.++-+.. .++--|.-.+..+.+.|
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcc
Confidence 333444556677777777777664 456666666677777777776655443322 12344555566666666
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLL 825 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 825 (1012)
+.++|.+++.+.-. .. -...+|.+.|++.+|.++.
T Consensus 759 n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666655321 11 3445566666666666543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.2 Score=39.76 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 001797 278 CFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGG 357 (1012)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 357 (1012)
..++..++.++++.|+.+....+++..-...+..... .+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666666666777666666666554322111100 000 11122345666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 001797 358 ICKAGEIEKAKGLMTEMLRL-GINPDTQTYNSLIEGCY 394 (1012)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 394 (1012)
|+..|++..|.++.+...+. +++-+..+|..|+....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777766553 44445666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.49 E-value=8.1 Score=37.70 Aligned_cols=131 Identities=9% Similarity=0.075 Sum_probs=66.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA-GTMKDA 821 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A 821 (1012)
|.+.+++++|...++..++ +|...|++..|.+..-++-+ .|... .++++|
T Consensus 83 cykk~~~~eAv~cL~~aie--------------Iyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~eka 133 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIE--------------IYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKA 133 (288)
T ss_pred HhhccChHHHHHHHHHHHH--------------HHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHH
Confidence 3455577777777766654 56666666655544333322 22211 344455
Q ss_pred HHHHHHHHHC--CCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH------HHHHHHHhcCChHH
Q 001797 822 EHLLVEMQKR--VLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYS------MMVDAYLKEGNMMK 890 (1012)
Q Consensus 822 ~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------~l~~~~~~~g~~~~ 890 (1012)
+..|+..-+. |-..+ ...+.-+...-...+++.+|+++|+++....+..+.--|. .-+-++.-..+.-.
T Consensus 134 I~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 134 IAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred HHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHH
Confidence 5555444331 11111 1223333344456678888888888887654443332222 11223333456666
Q ss_pred HHHHHHHHHHcC
Q 001797 891 TIKLVDEMFLRG 902 (1012)
Q Consensus 891 A~~~~~~~~~~~ 902 (1012)
+...+++-.+..
T Consensus 214 a~~ALeky~~~d 225 (288)
T KOG1586|consen 214 AQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHhcC
Confidence 666666666664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.73 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPDN-----FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
+...|++++|..-|.+.+.. +++.. +.|..-..++.+.+.++.|++-..++++.+|....++..-+.+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 45677777777777777764 33321 2344455566778888888888888888888877777777888888888
Q ss_pred HHHHHHHHHHHHhC
Q 001797 783 IFEANKLLEDMADK 796 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~ 796 (1012)
+++|++-|+++++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888874
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=13 Score=39.42 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 001797 855 EMFALFDEMVERGVEPDGVIYSMMVDAYLK----EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 855 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 902 (1012)
.|...+.++.+.+ +......++..|.. ..+.++|..+|++..+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555433 33333334433322 225556666666655555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.22 E-value=5.5 Score=34.98 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 798 (1012)
.++.....|+-++-.+++..+.+.+..++.....++.+|.+.|+..++.+++.++.+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555544444445555566666666666666666666555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.21 E-value=12 Score=39.04 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHcCCHHHHHHHHHHhhhCC--CCCCHH-----HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 001797 709 CKSGNLTEAFQLVNEMPSRG--VTPDNF-----VYCTLVDGCCRDG-NMEKALSLFLEMVQ 761 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~--~~pd~~-----~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 761 (1012)
.++|+.+.|..++.+..... ..|+.. .+...+......+ +++.|..+++++.+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46788888888888776532 233332 1111222223444 77777777766544
|
It is also involved in sporulation []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.38 Score=48.85 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 845 HGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 845 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+-|.++|.++||+..|...+. ..| ++.++.+-+.+|.+..++..|..-...++..+ ..-..+|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 445666666666666665553 444 55555555566666666666666665555543 11123444555555555666
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 001797 924 YKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~ 941 (1012)
.+|.+-++.+++ ++|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 5565
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.05 E-value=4.2 Score=37.25 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=14.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCK 779 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 779 (1012)
..+.......+++.++..++..+...+.++..|++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33344444444444444433333344444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.7 Score=39.14 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
...|..+|.+.+|+++.++.+..+ |-+...|..|...+...|+--.|.+.|+++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 356667777777777777777765 5666777777777777777766766666653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.97 E-value=24 Score=41.78 Aligned_cols=48 Identities=23% Similarity=0.067 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCC-------hhhHHHHHHHHHhcCCHHHHHHHHH
Q 001797 640 KQGFIKEAFQLHEKMCESGI-TPN-------IVTYNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
-.+++..|....+.+.+... .|+ ..++...+-.+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677777777777764311 111 1222222333445677888887776
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.97 E-value=3.2 Score=46.26 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=13.1
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
+...|..|+......|+++-|.+.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344455555555555555544444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.90 E-value=25 Score=41.66 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----H---HHHHHHHH-HHHHcCCHHHHHHHHHHhhhC----CCCCCHHHHHHH
Q 001797 672 GLCKSGELERARELFDGIFAKGLTPT----V---VTYTTIID-GYCKSGNLTEAFQLVNEMPSR----GVTPDNFVYCTL 739 (1012)
Q Consensus 672 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~---~~~~~li~-~~~~~g~~~~A~~l~~~~~~~----~~~pd~~~~~~l 739 (1012)
......++++|..+..++...-..|+ . ..++.+-. .....|++++|.++.+..... -..+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34456677777777777665311111 1 12333221 223467777777777766543 122234455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQK 762 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~ 762 (1012)
..+..-.|++++|..+.....+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH
Confidence 66666677777777776665543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.68 E-value=24 Score=40.96 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 001797 320 INGFMKQGNLQEAFRLKNEMVTFGIKL---NLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396 (1012)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 396 (1012)
|+.+.+.+.+++|+.+-+.... ..| -...+...|..+.-.|++++|-...-.|... +..-|---+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4555666667777666554432 222 2234555666666677777777776666532 444454444444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 397 NNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 443222111 1111111244556666655554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.5 Score=39.06 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHH
Q 001797 308 KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVT-FGIKLNLFTYNALIGGIC 359 (1012)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 359 (1012)
...|+..+..+++.+|+..|++..|+++.+...+ -+++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567888888888888888888888888877754 356666777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.53 E-value=8 Score=35.41 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 001797 318 TLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKA 361 (1012)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (1012)
.++..+.+.+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555555555555555544 24444555555555543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.50 E-value=24 Score=40.58 Aligned_cols=252 Identities=11% Similarity=0.059 Sum_probs=118.6
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhH-HHHHHHHHhcCc
Q 001797 709 CKSGNLTEAFQLVNEMPSRGVTP-----DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSF-NALLNGLCKSQK 782 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~~~p-----d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 782 (1012)
...|+..+|.+++.-..-..-.| ..-.+.++.-.++..| ....+++...++....+...+ ..|+-++...|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG--~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHG--RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcC--ccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35677777777777654331111 1113333433333333 346666666655544333222 234444554443
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCH-HHHHHHHHHHHHCCC-CCChHHHHH--HHHHHHccCChhHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTY--TILIDYHCKAGTM-KDAEHLLVEMQKRVL-KPNFRTYTS--LLHGYAGIGKRSEM 856 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~p~~~~~~~--l~~~~~~~g~~~~A 856 (1012)
-. .++|+.+.+.-...+.++= ..+.-+++-.|.. .+|+ ++|..... .....+... +.-++...|+-++|
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eai---edm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAI---EDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHH---HHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhh
Confidence 22 2333333322111222211 1122233333322 2222 33332111 112223332 33455667778888
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 857 FALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..+.++|... .+|- ..-...++.+|+-.|+..--.+++.-+.... ..|..-+..++-++.-..+.+.......-+.
T Consensus 521 d~lI~el~~d-kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~~s~V~lLs 598 (929)
T KOG2062|consen 521 DPLIKELLRD-KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQLPSTVSLLS 598 (929)
T ss_pred HHHHHHHhcC-CchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhchHHHHHHh
Confidence 8888888742 2331 1224456667777777665555555544443 4555556666666666677777776666554
Q ss_pred hCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 935 DKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 935 ~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+ ...|..-.-..+.-+ .|.---..+|+.+++-|.+
T Consensus 599 e-s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 599 E-SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred h-hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 4 244433222222222 2222234567777777766
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.40 E-value=3.1 Score=46.35 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHh------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 228 TYTSLINAHFRAGNVKAAQRVLFEMEEK------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLL 301 (1012)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 301 (1012)
-.+.++.-+-+.|..+.|+.+-..-..+ .|+++.|.+... ..++...|..|.+...++|+++-|.+.|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK------ELDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666666666666654433222 344444444422 2235667777777777777777777777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 302 KKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTE 373 (1012)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (1012)
.+..+ |..|.-.|.-.|+.+.-.++.+.....|- +|....++.-.|++++..+++.+
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76542 45566666666776666666666655541 33333444445555555544433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.39 E-value=13 Score=37.03 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 641 QGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 641 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
....++|+.-|++.++...+.. -.+...++..+.+.|++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456667777766665422211 2233445556666666666666666654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=19 Score=38.03 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C-
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAG----IGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE-----G- 886 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 886 (1012)
+..+|..+|+.+.+.|. ......|...|.. ..+..+|..+|+++.+.|..+.......+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 45666666665554432 2223334444433 337778888888887766554323344455444432 1
Q ss_pred -ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhc----cccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----
Q 001797 887 -NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCK----EEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAG----- 956 (1012)
Q Consensus 887 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g----- 956 (1012)
+...|...+.++...+ +......++..|.. ..+.++|..+|.++.+.|- ......+..+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~----~~a~~~~~~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD----GAACYNLGLMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCchh
Confidence 3347999999999987 66777777766643 4588999999999988663 33333344666555
Q ss_pred ----------CHHHHHHHHHHHHHCCCccChhHHH
Q 001797 957 ----------NIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 957 ----------~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
+...|...+......|.........
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7788888888888887666555554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=33 Score=40.57 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=60.8
Q ss_pred cCChhHHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 850 IGKRSEMFALFDEMVE-RGVEPDG--VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
..+.+.|..++..... .+..++. .++..++......+...+|...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 3455667777766543 2222221 223333333333322556666666544332 2333333333344467777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 927 LKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMI 969 (1012)
Q Consensus 927 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 969 (1012)
...+..|... ..-...-.||+.+.+...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777666442 23344455666666666777777777777753
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.96 Score=46.09 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
|.++|.+++|++.|...+. ..| +.+++..-..+|.+...+..|..-...++..+.....+|..-+.+-...|+..+|
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555555555555444 233 4455555555555555555555555555444433334444444444445555555
Q ss_pred HHHHHHHHh
Q 001797 787 NKLLEDMAD 795 (1012)
Q Consensus 787 ~~~~~~~~~ 795 (1012)
.+-++..++
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.8 Score=39.20 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV--TYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.++..++..|++.|+.++|.+.|.++.+....+... .+..++......|++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666677777777777776666654444332 445555666666666666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.21 E-value=20 Score=39.09 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH---hCCC--CC---CHHHHHHHHHHHHhcC
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA---DKHI--TP---NHVTYTILIDYHCKAG 816 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~p---~~~~~~~l~~~~~~~g 816 (1012)
...+...+..-.+.++....+++.....-.+.+.-.|++.+|.+++...- ..|. .| ....||.|.-.+.+.|
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~ 297 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG 297 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh
Confidence 33344444433343333333444555556677778888888888776542 1121 12 1234567766677777
Q ss_pred CHHHHHHHHHHHHH-------CCCCCCh-----------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 001797 817 TMKDAEHLLVEMQK-------RVLKPNF-----------RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMM 878 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~-------~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 878 (1012)
.+.-+..+|.++++ .|+.|.. .+|+ .+-.|...|++-.|.+.|.+.+.. +..++..|..|
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRl 375 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRL 375 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHH
Confidence 77777777776653 3444432 1222 234566788888888888887762 44567788888
Q ss_pred HHHHHh
Q 001797 879 VDAYLK 884 (1012)
Q Consensus 879 ~~~~~~ 884 (1012)
+.++..
T Consensus 376 AEcCim 381 (696)
T KOG2471|consen 376 AECCIM 381 (696)
T ss_pred HHHHHH
Confidence 876653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.38 Score=31.72 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+|..|+.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677778888888888888887754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.02 E-value=8.9 Score=35.41 Aligned_cols=51 Identities=14% Similarity=-0.090 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
..++.+.+..++.-+.-..|..+..-..-+..+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445666666666666655555555555555555666666666666666544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.8 Score=43.06 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 328 NLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
.++--...++.|.+.|+..|..+|+.|++.+
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 3444444455555555555555565555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.21 E-value=31 Score=37.53 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITP---NHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
..+..++....+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..+++...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566667777777777777777777766532111 233334455666677777777777766655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.94 E-value=57 Score=40.10 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDG 747 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g 747 (1012)
-.++.-.+.|-+++|..++..=.++ -...|.+..+-+.+.+.+++|.-+|+..=+ ...-+.+|..+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 3334444555566665554311111 122333334444455556665555554321 122344555566
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
+|.+|+.+..++..........-..|+.-+..+++.-+|-++..+.... | .-.+..||+...+++|.....
T Consensus 980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 6666666555443211111122245556666666666666666655431 1 122344555556666665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.68 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
++..|+..|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888999998888886543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.59 E-value=24 Score=35.21 Aligned_cols=203 Identities=15% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Q 001797 693 GLTPTVVTYTTIIDG-YCKSGNLTEAFQLVNEMPSRGVTPDN---FVYCTLVDGCCRDGNMEKALSLFLEMVQKG----- 763 (1012)
Q Consensus 693 ~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~~~~~~~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 763 (1012)
+..||+..-+..-.. -.+...+++|+.-|++..+..-.... .....++....+.|++++..+.|.+++.--
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445555443332211 12344677777777776653111111 134455666667777777776666654310
Q ss_pred -CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---
Q 001797 764 -LASTSSFNALLNGLCKSQKIFEANKLLEDMADKH-ITPNHV----TYTILIDYHCKAGTMKDAEHLLVEMQKRVLK--- 834 (1012)
Q Consensus 764 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 834 (1012)
-.+....+.+++.-....+.+--.++++.-++.- -..+.. +-+.|...|...|.+.+-.++++++...-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 0111334444444444444444444443322210 001111 2234555555555555555555555432111
Q ss_pred -CC-------hHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCCHHHHHHHH----HHHHhcCChHHHHHHH
Q 001797 835 -PN-------FRTYTSLLHGYAGIGKRSEMFALFDEMVE-RGVEPDGVIYSMMV----DAYLKEGNMMKTIKLV 895 (1012)
Q Consensus 835 -p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~ 895 (1012)
.| ..+|..-+..|-...+-.....+|++.+. ...-|.+.+...+- ....+.|++++|-.-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 11 12333334444455555555555555543 23334443332222 3344555555554433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.7 Score=41.89 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 643 FIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG----------------ELERARELFDGIFAKGLTPTVVTYTTIID 706 (1012)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 706 (1012)
.++-.-..+..|.+-|+.-|..+|+.|++.+-+.. +-+-+++++++|...|+.||..+-..+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444555556666666666666655443321 12345666666666666666666666666
Q ss_pred HHHHcCC
Q 001797 707 GYCKSGN 713 (1012)
Q Consensus 707 ~~~~~g~ 713 (1012)
++.+.+-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 6665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.54 E-value=3.3 Score=42.35 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD-----KHITPNHVTYTILI 809 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 809 (1012)
++..++..+...|+.+.+.+.+++++...|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4555666666667777777777777777777677777777777777777777766666543 45666665544443
Q ss_pred H
Q 001797 810 D 810 (1012)
Q Consensus 810 ~ 810 (1012)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.42 E-value=12 Score=34.49 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPDGV-IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 921 (1012)
++..-...++.+++..++..+.- +.|... .-..-++.+...|+|.+|+.+++.+.... +..+..-..++.++...|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA-PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHcC
Confidence 33444677889999999888875 667543 33344577888999999999999987775 444555555666666666
Q ss_pred cHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 922 EFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 922 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
+.+= .....++.+. +.++....+++.+....+...|..
T Consensus 93 D~~W-r~~A~evle~---~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSW-RRYADEVLES---GADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred ChHH-HHHHHHHHhc---CCChHHHHHHHHHHHhccccchhh
Confidence 5442 2233344442 224555566666665555555444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.49 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|..++.++...|++++|.+.++++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.21 E-value=39 Score=37.22 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHC
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSD-LEGACRVFEEMIAC 447 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~ 447 (1012)
..|+..|...+.-+-+.+.+.+.-.+|.+|.... +.++..|..-.......+. ++.|..+|.+.+..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 4477777777776666666777777777777765 4555555554444444443 77777777777765
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.5 Score=38.59 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER 866 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 866 (1012)
+++|...|+++.. ..|+...|+.-+... .+|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4455555555554 456666666555443 2344455555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.87 E-value=6.2 Score=37.00 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK-----------IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 749 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
+++|+.-|++++..+|....++..++.+|...+. +++|.+.|++..+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 5667777888888888888888888888876653 5666677777776 579999998877765
Q ss_pred HHHHHHHHHHHHHCCC
Q 001797 818 MKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~ 833 (1012)
.+|-++..++.+.+.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 346677777766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.81 E-value=59 Score=38.73 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=45.6
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCH----H---HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCch-----hhHHHHH
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPDN----F---VYCTLVDG-CCRDGNMEKALSLFLEMVQKGLAST-----SSFNALL 774 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~pd~----~---~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 774 (1012)
.....++++|..++.++...-..|+. . .+..+-.. ....|+++.|.++.+..+..-|... ..+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567777777777776543112111 1 23333222 2345667777777766665544322 3444555
Q ss_pred HHHHhcCcHHHHHHHHHHHH
Q 001797 775 NGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 775 ~~~~~~g~~~~A~~~~~~~~ 794 (1012)
.+..-.|++++|..+.....
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 505 EAAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHHhchHHHHHHHHHHHH
Confidence 55555666666665554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.69 E-value=25 Score=36.93 Aligned_cols=128 Identities=14% Similarity=0.188 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHhcCC--
Q 001797 295 EDAKLLLKKMYDLKLNPNEVVYTTLINGFMK--QG----NLQEAFRLKNEMVTFGI---KLNLFTYNALIGGICKAGE-- 363 (1012)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~-- 363 (1012)
.+...+++.+.+.|+..+..+|.+..-..-. .. ....|..+++.|.+... .++-+.+.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777777776666543222221 12 24456667777766431 2333444444433 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHH
Q 001797 364 --IEKAKGLMTEMLRLGINPDTQ-TYNSLIEGCYRENN---MAKAYELLVDMKKRNLSPTAYTCNVI 424 (1012)
Q Consensus 364 --~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~l 424 (1012)
.+.+..+++.+...|+..+.. .+.+-+-+++.... ...+.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234455555555555544222 22222222221111 23455555555555555544444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.37 E-value=4.7 Score=38.63 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG--VIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
.+..++.-|++.|+.++|.+.|.++.+....|.. ..+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555543333322 2334444445555555555555444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.3 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.+..++.++...|++++|++.+++++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.1 Score=28.88 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.|..++.+|...|++++|++.++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.32 E-value=7.9 Score=37.97 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
.+.++..++...|++-++++....++... |.+..+|..-+.+....-+.++|..-+.++++ +.|.-.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 45667788899999999999999999986 77889999999999999999999999999987 666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.47 E-value=6.8 Score=40.13 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVT-----FGIKLNLFTYNAL 354 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 354 (1012)
++..++..+...|+++.+...+++..... +-+...|..++.+|.+.|+...|+..++++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667777777778888888887777765 56677777777788777877777777777654 3555554444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.42 E-value=29 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=11.3
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCH
Q 001797 376 RLGINPDTQTYNSLIEGCYRENNM 399 (1012)
Q Consensus 376 ~~g~~p~~~~~~~li~~~~~~g~~ 399 (1012)
+.++.|+...|..+++.+.+.|++
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCH
Confidence 344444444444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.35 E-value=29 Score=32.56 Aligned_cols=134 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 001797 403 YELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK 482 (1012)
Q Consensus 403 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 482 (1012)
.++++.+.+.+++|+...+..+++.+.+.|.+..-..+ +..++-+|.......+-.+ .+....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34556666777788888888888888888876554444 3444445544333322111 22333444444444432
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 483 GVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML 550 (1012)
Q Consensus 483 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (1012)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113455666677777777777776654221 22222344444445554444444444333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.17 E-value=16 Score=32.36 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 869 EPDGVIYSMMVDAYLKEGN---MMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 869 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+...+...+++++.+..+ ..+.+.+++.+++...| ........|+-++++.++|++++++.+.+++ .+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcHH
Confidence 5677788888899887764 55678888888874333 2345666788889999999999999999988 6888776
Q ss_pred HHHHHH
Q 001797 945 CCILIS 950 (1012)
Q Consensus 945 ~~~ll~ 950 (1012)
...+-.
T Consensus 107 a~~Lk~ 112 (149)
T KOG3364|consen 107 ALELKE 112 (149)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.12 E-value=42 Score=36.47 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001797 118 LFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGV 181 (1012)
Q Consensus 118 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~ 181 (1012)
.+.+++..+...+..+ +|..++. +++ ..|....++-.+...+...|+...|.++.+++
T Consensus 9 ~Y~~~q~~F~~~v~~~-Dp~~l~~-ll~----~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH-DPNALIN-LLQ----KNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHH-HHH----HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777766655 4443332 222 23456677888889999999999999988887
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.42 E-value=64 Score=35.65 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 001797 592 DLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALID 671 (1012)
Q Consensus 592 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 671 (1012)
|.....+++..+...-++.-...+..+|+.-| .+...|..++.+|... ..++-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444455555555555555555555555532 2444555555555554 334455555555554322 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHh
Q 001797 672 GLCKSGELERARELFDGIFAKGLTP--T---VVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCR 745 (1012)
Q Consensus 672 ~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~ 745 (1012)
.|-+ ++.+.+..+|.++..+-++. + ...|..++.. -..+.+..+.+...+... |..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 55555555555555431110 0 1123333321 123444444444444332 222223334444445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhh
Q 001797 746 DGNMEKALSLFLEMVQKGLASTSS 769 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~~~ 769 (1012)
..++.+|++++..+++.+-.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhH
Confidence 566666666666555555444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.40 E-value=52 Score=34.58 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCCCch----hhHHHHHHHHHhcCc---
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCR--DG----NMEKALSLFLEMVQKGLAST----SSFNALLNGLCKSQK--- 782 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~--- 782 (1012)
+.+.+++.|.+.|+.-+..+|.+..-.... .. ...+|.++|+.|.+..|--+ ..+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555544432222211 11 23455666666666544211 122222111 1222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 001797 783 -IFEANKLLEDMADKHITPNHV-TYTILIDYHCKAG---TMKDAEHLLVEMQKRVLKPNFRTYTSLL 844 (1012)
Q Consensus 783 -~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 844 (1012)
.+.+..+|+.+.+.|+..+.. -+.+-+-+++... ...++.++++.+.+.|+++....|..++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 233445555555555544322 2222222221111 1335555666666666665555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.28 E-value=12 Score=38.19 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q 001797 658 GITPNIVTYNALIDGLCKSGELERARELFDGIFAK---GLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF 734 (1012)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~ 734 (1012)
|.+....+...++..-....+++.+..++-++... -..|+.. -.+.+.. +-.-++++++.++..=+.-|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 33334444444554445556677777766666532 0011111 1122222 23346667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
+++.+++.+.+.+++.+|..+...++....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 888888888888888877777766665543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.83 E-value=30 Score=31.47 Aligned_cols=50 Identities=10% Similarity=-0.111 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 746 DGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.++.+++..++..+.-..|.....-..-+..+...|+|.+|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555666666555555555554444455555566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.53 E-value=49 Score=33.50 Aligned_cols=197 Identities=12% Similarity=0.164 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch--------hhHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCC-CHHHHH
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST--------SSFNALLNGLCKSQKIFEANKLLEDMAD---KHITP-NHVTYT 806 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p-~~~~~~ 806 (1012)
+.+-..+.+++++|+..+.+++.+|.... .+...+...|...|++..-.+......+ .--.| ......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44455667778888888888877764322 3445567777777776655544433221 11111 222334
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCHHHHH
Q 001797 807 ILIDYHC-KAGTMKDAEHLLVEMQKRVLKPNFR-----TYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEPDGVIYS 876 (1012)
Q Consensus 807 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~ 876 (1012)
.|+..+. ....++.-+.+.....+.....+.. .-..++..+.+.|.+.+|+.+.+..+. ..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 4444442 2334555555555555422211111 112345566666666666665554432 22233322221
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcC----CccCHHHHHHHHHH--HhccccHHHHHHHHHHHhh
Q 001797 877 -MMVDAYLKEGNMMKTIKLVDEMFLRG----LVLNQNVYTSLANS--LCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 -~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 935 (1012)
.-..+|.+..+..++..-+..+.... +||-.....-|..+ .|...++.-|..+|-++.+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 11245555555555555544443331 33333333333322 4445555666666555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.79 E-value=3.3 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
....++-++.+.|++++|.+..+.+++ ++|++.....+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345667778888888888888888887 78887776665433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.66 E-value=1e+02 Score=36.52 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001797 522 NLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKE 571 (1012)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 571 (1012)
+......+|.-+.+.|++++|.++..+..+. .......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3334456677777888888888887444332 233444555556666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.62 E-value=1.5 Score=27.91 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=12.6
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhh
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
..++.++.+.|++++|.+.++++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.45 E-value=22 Score=39.85 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=49.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001797 813 CKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..+.+ |..|+-++...|+-+--.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45566666666554332 345566666666666666666666655432 223333444455544444
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
++-....+.| . .+.-..+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444443 1 11122345556666666665544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.25 E-value=57 Score=33.30 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 737 CTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
......|..+|.+.+|.++.++++..+|-+...+..|+..+...|+--.|.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455666777777777777777766666666666666666666666665555554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.15 E-value=0.78 Score=47.08 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=82.3
Q ss_pred HHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
....|.+++|+++|...++ +.| ....|..-..++.+.++...|++-+..++..+ +....-|.--+.+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHH
Confidence 3456778888888887775 444 34455566677788888888888888777775 4445556666667777788888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 001797 926 VLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVA 975 (1012)
Q Consensus 926 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 975 (1012)
|.+.+..+.+. .-+...-.|+-...-..+..++-...+++.++..-++
T Consensus 201 aa~dl~~a~kl--d~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~ 248 (377)
T KOG1308|consen 201 AAHDLALACKL--DYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIK 248 (377)
T ss_pred HHHHHHHHHhc--cccHHHHHHHHHhccchhhhhhchhHHHHHHHHhccc
Confidence 88888877774 3444445555555556666666666666666654443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.50 E-value=8.8 Score=42.56 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.|++...+.|...+|..++.+.+... ...+-++..+++++....+.+.|++.++.++++.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34444444444444444444444321 1233344444444444455555555555544443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.40 E-value=1.8 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.0
Q ss_pred HHHHHhccccHHHHHHHHHHHhh
Q 001797 913 LANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 913 l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|+.+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.37 E-value=23 Score=35.13 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCc-----cCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 873 VIYSMMVDAYLKEGNMM-------KTIKLVDEMFLRGLV-----LNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
..+..+++.|...|+.+ .|.+.|.++...... ....+...++....+.|++++|.+++.+++.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34555566666666633 333334443333211 1134444555666666666666666666654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.29 E-value=16 Score=35.43 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 882 YLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 882 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+.+.+...+|+...+.-.+.. |.+...-..+.+.||-.|+|++|...++-+.
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344444444444444444333 3334444444444444444444444444433
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.22 E-value=2.2 Score=46.24 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=44.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHH
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYS-MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
+.+.++.|+.++.++++ +.|+...|. .-..++.+.+++..|+.-+.++++.. |.-...|..-+.++.+.+.+.+|.
T Consensus 16 ~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHH
Confidence 34445555555555553 444333322 22244455555555555555555544 323344444444555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHH
Q 001797 928 KLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 928 ~~~~~~~~~g~~p~~~~~~~l 948 (1012)
..++.... +.|+.+...-.
T Consensus 93 ~~l~~~~~--l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 93 LDLEKVKK--LAPNDPDATRK 111 (476)
T ss_pred HHHHHhhh--cCcCcHHHHHH
Confidence 55555544 44554444333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=73 Score=33.24 Aligned_cols=219 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCChhh
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEI----EKAKGLMTEMLRLGINPDTQT 385 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~ 385 (1012)
.+|..+....+..+...|. .++...+..+.. .+|...-...+.++++.|+. +++...+..+... .|+...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3555555556666666554 333333444433 23555555556666666652 3555666555332 345444
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001797 386 YNSLIEGCYRENNM-----AKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLI 460 (1012)
Q Consensus 386 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 460 (1012)
-...+.++...+.. ..+...+..+.. .++..+-...+.++.+.|+ ++|...+-.+++. +|..+-..-+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444444443321 122233322222 2244444555555555554 3455555555542 3333333333
Q ss_pred HHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH
Q 001797 461 QAHLRQN-RFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 461 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
.++.+.+ ....+...+..+.. .++...-..-+.++.+.|+ ..|...+.+..+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 3333321 12344444444443 2344444445555555554 334444444443311 122334444444443
Q ss_pred HHHHHHHHHHHH
Q 001797 540 QAADRYFQEMLN 551 (1012)
Q Consensus 540 ~~A~~~~~~~~~ 551 (1012)
+|...+..+.+
T Consensus 252 -~a~p~L~~l~~ 262 (280)
T PRK09687 252 -TLLPVLDTLLY 262 (280)
T ss_pred -hHHHHHHHHHh
Confidence 34444444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.06 E-value=1.7 Score=44.73 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHH
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 890 (1012)
....|.+++|+++|...+.. .++....|..-..++.+.++...|++-+..+++ +.||. .-|-.-..+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 34678888999988888765 345566777777888888888888888888875 66654 334444455566789999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|...+..+.+.++ +..+-..|-.+.-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~--dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDY--DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccc--cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 9999988888873 444444444555555666665555555544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.92 E-value=6.2 Score=38.62 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=74.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPDGVIY-SMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
.+.|....+++.|+..|.+++. +.|...+| .+-+.++.+..+++.+..-..++++.. |.......-++.+......
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcc
Confidence 3457778899999999998885 78877554 467788899999999999999999885 4456778889999999999
Q ss_pred HHHHHHHHHHHhh
Q 001797 923 FYKVLKLLDEMGD 935 (1012)
Q Consensus 923 ~~~A~~~~~~~~~ 935 (1012)
+++|++.+.++..
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999999853
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.69 E-value=1.3e+02 Score=35.51 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 560 IYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGK 608 (1012)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 608 (1012)
.+..+|+.+.-.|++++|-...-.|... +...|...+..+...++
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 3444455555555555555555555443 33444444433333333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.55 E-value=20 Score=35.32 Aligned_cols=115 Identities=14% Similarity=-0.006 Sum_probs=75.6
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
...+++.|+..|.+.+. +.|+..+ |..-+..+.+..+++.+..-..++++..|........++.+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 34567777777777665 4666643 45556667778888888888888888888777777888888888888888888
Q ss_pred HHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 789 LLEDMAD----KHITPNHVTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 789 ~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
.+.+..+ ..+++....+..|..+--+.=...+..++.+
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 8877743 2233444455555544333333334444333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=95 Score=33.94 Aligned_cols=122 Identities=8% Similarity=0.033 Sum_probs=65.4
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 393 CYRENNMAKAYELLVDMKKR-NLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEE 471 (1012)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 471 (1012)
....|+.-.|-+-+...+.+ .-.|+..... .......|+++.+...+...... +.....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34456665554433333332 2223333222 23344567777777776654432 23344566667777777777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001797 472 AINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANG 518 (1012)
Q Consensus 472 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 518 (1012)
|..+-+.|+...+. +......-.-..-..|-++++.-.++++..-+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777765544 33322222222334566677777777665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.19 E-value=12 Score=36.01 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---ccCHHHHHHHHHHHhccccHHHH
Q 001797 855 EMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL---VLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 855 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
+|.+.|-++...+.--++.....|+..|. ..+.++|+.++.++++..- .+|+.++..|+.++.+.|++++|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444433222234444444443332 3455555555555554421 23455555555555555555554
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.16 E-value=76 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLV 895 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~ 895 (1012)
|+.....++..|.+.|++.+|...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 6777788888889999888888766
|
; PDB: 3LKU_E 2WPV_G. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.0 bits (229), Expect = 3e-19
Identities = 30/308 (9%), Positives = 88/308 (28%), Gaps = 10/308 (3%)
Query: 540 QAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVL 599
Q A +P + L+ + ++ + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 600 IHGLSRCGKIHEALEVFSELQD---KGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCE 656
++ A + K + + Y++++ G+ +QG KE + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 657 SGITPNIVTYNALIDGLCKSG-ELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLT 715
+G+TP++++Y A + + + + + + +GL + ++ ++ L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLN 775
++ P L+ L L + + L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 776 GLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835
+ + +++ T + + + +++ V +
Sbjct: 314 SRVCVVSVEKPTLPSKEVKHARKTLKT------LRDQWEKALCRALRETKNRLEREVYEG 367
Query: 836 NFRTYTSL 843
F Y L
Sbjct: 368 RFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 1e-18
Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 4/264 (1%)
Query: 395 RENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNF 454
R + A L ++ SP ++ L+ + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 455 VYTTLIQAHLRQNRFEEAINIL---KGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCL 511
+ L ++ A ++L G K L + YN+++ G + ++ L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 512 VEMTANGLKPNLYTYGAFIREYTKTGN-MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570
+ GL P+L +Y A ++ + +R ++M G+ + L+ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVIT 630
+K LP S L+ + ++ L+ + +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308
Query: 631 YSSLISGFCKQGFIKEAFQLHEKM 654
+ L S C K E
Sbjct: 309 HMELASRVCVVSVEKPTLPSKEVK 332
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 4e-17
Identities = 56/387 (14%), Positives = 124/387 (32%), Gaps = 16/387 (4%)
Query: 229 YTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGF 288
+ + F++G KA R ++E ++ + A L++ P + ++
Sbjct: 44 LKAKLQMPFQSGEFKALTR-RLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102
Query: 289 CKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRL---KNEMVTFGIK 345
L+ + + +L+ + + L A L +
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162
Query: 346 LNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYE- 404
L L YNA++ G + G ++ ++ + G+ PD +Y + ++ R++ A E
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 405 LLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHL 464
L M + L A V+++ R + L+ +V P + L++
Sbjct: 223 CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 465 RQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLC-KAKKMEDARSCLVEMTANGLKPNL 523
++ + + L + + L S +C + + S V+ LK
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
Query: 524 YT-----YGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTL--IDGHCKEGNVKE 576
A + R+ C + +++ L + +G E
Sbjct: 343 DQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQG---E 399
Query: 577 AFSTFRCMLGRGILPDLKTYSVLIHGL 603
+F+T L + G
Sbjct: 400 SFTTLARELSARTFSRHVVQRQRVSGQ 426
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 2e-15
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 4/194 (2%)
Query: 779 KSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLK---P 835
+ + ++ + A HLLV + K
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTI-KL 894
Y +++ G+A G E+ + + + G+ PD + Y+ + ++ TI +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 895 VDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYE 954
+++M GL L L + + V K+ L+ VY
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 955 AGNIDKATRFLESM 968
+ +
Sbjct: 284 KDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 3e-14
Identities = 31/290 (10%), Positives = 86/290 (29%), Gaps = 10/290 (3%)
Query: 719 QLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGL 777
L + +P L+ +++ + + Q L A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 778 CKSQKIFEANKLLE---DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLK 834
+ ++ A+ LL K Y ++ + G K+ ++L ++ L
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 835 PNFRTYTSLLHGYAGIGKRSEMFA-LFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIK 893
P+ +Y + L + + ++M + G++ + ++++ + + K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 894 LVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH-----ATCCIL 948
+ L + + L + ++ KL + + +
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 949 ISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSN 998
+ SV + K + +K + +++ +N E
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEG 367
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 2e-09
Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 4/177 (2%)
Query: 819 KDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMM 878
+ A L ++ P LL G A + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 879 VDAYLKEGNM---MKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935
L + + + + +L ++Y ++ ++ F +++ +L + D
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 936 KEIKLSHATCCILISSVYEAGNIDKA-TRFLESMIKFGWVADSTVMMDLVKQDQNDA 991
+ + + + R LE M + G + L+ ++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 7e-09
Identities = 30/262 (11%), Positives = 72/262 (27%), Gaps = 26/262 (9%)
Query: 161 LIDGYRKIGFLDDAAIVF--FGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVML 218
L A + + + L N+++ R K V ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 219 EAKVTPDVYTYTSLINAHFRAGN-VKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPD 277
+A +TPD+ +Y + + R +R L +M ++ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA---------------- 236
Query: 278 CFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKN 337
++++ + L+ + P V + L+ + +L
Sbjct: 237 -LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 338 EMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYREN 397
+ T + L +C +EK E+ +T +L + +
Sbjct: 296 PLKTLQCLFEKQLHMELASRVCVV-SVEKPTLPSKEVKHA-----RKTLKTLRDQWEKAL 349
Query: 398 NMAKAYELLVDMKKRNLSPTAY 419
A ++ +
Sbjct: 350 CRALRETKNRLEREVYEGRFSL 371
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 4e-18
Identities = 108/769 (14%), Positives = 213/769 (27%), Gaps = 251/769 (32%)
Query: 164 GYRKI--GFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAK 221
Y+ I F D V + C + D+ ++ L + D ++ +
Sbjct: 17 QYKDILSVFEDA-------FVDN-------FDCKDVQ-DMPKS---ILSKEEIDHIIMS- 57
Query: 222 VTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT- 280
D + T + + + Q+ + E+ + F L + + P T
Sbjct: 58 --KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI----NYKF-LMSPIKTEQRQPSMMTR 110
Query: 281 -YSLMVDGFCKN---------KRLEDAKLLLKKMYDLKLNPNEVVY-------TTLINGF 323
Y D + RL+ L + + +L+ N ++ T +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 324 MKQGNLQEAFRLKNEMVTFGIK-LNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD 382
+Q F I LNL + ++ + +L D
Sbjct: 171 CLSYKVQCKM-------DFKIFWLNL-------------KNCNSPETVLEMLQKLLYQID 210
Query: 383 TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAY-TCNVIINGLCRCSDLE---GAC 438
+ S + +N+ + +R L Y C +++ + +C
Sbjct: 211 -PNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 439 RVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGL 498
++ + TT RF++ + L T + L
Sbjct: 267 KI--------------LLTT---------RFKQVTDFLSAATTT-----HISLDHHSMTL 298
Query: 499 CKAKKMEDARSCLVEMTANGLKPN--------LYTYGAFIREYTKTGNMQAADRYFQEML 550
+ L + L L IR+ T D + + +
Sbjct: 299 TPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-----WDNW--KHV 350
Query: 551 NCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPD-----LKTYSVLIHGLSR 605
NC II ++L + ++ F + P S++ + +
Sbjct: 351 NC-DKLTTIIESSL--NVLEPAEYRKMFDRL------SVFPPSAHIPTILLSLIWFDVIK 401
Query: 606 CGKIHEALEVFSELQDKGLV---PDVITYS--SLISGFCKQGFIKEAFQLHEKMCESGIT 660
+ + V ++L LV P T S S+ + ++ + LH + +
Sbjct: 402 ----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--LENEYALHRSIVDH--- 452
Query: 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGY-CKSGNLTEAFQ 719
YN + + D F Y+ I G+ K+ E
Sbjct: 453 -----YN-IPKTFDSDDLIP---PYLDQYF----------YSHI--GHHLKNIEHPERMT 491
Query: 720 LVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSL-FLEMVQKGLASTSSFNA---LLN 775
L V+ L FLE QK ++++NA +LN
Sbjct: 492 LFRM-----------VF----------------LDFRFLE--QKIRHDSTAWNASGSILN 522
Query: 776 GLCKSQKIFEANKLLEDMA--DKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833
L+ + +I N Y L++ L ++++ ++
Sbjct: 523 -------------TLQQLKFYKPYICDNDPKYERLVN---------AILDFLPKIEENLI 560
Query: 834 KPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAY 882
YT LL AL D I+ +A+
Sbjct: 561 CSK---YTDLLR-----------IALMA--------EDEAIFE---EAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 3e-14
Identities = 93/617 (15%), Positives = 189/617 (30%), Gaps = 158/617 (25%)
Query: 456 YTTLIQAHLRQN-----RFEEAINILKGMTGKGVLPDVFCYNSLISGL-----CKAKKME 505
Y ++ ++ ++ K + K + + +SG K E
Sbjct: 18 YKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 506 DARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRY--FQEMLNCGIAPNDIIYTT 563
+ VE L+ N Y F+ KT Q + + E + N +
Sbjct: 77 EMVQKFVE---EVLRIN---YK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--- 126
Query: 564 LIDGHCKEGNV--KEAFSTFRCMLGRGILPDLKTYS-VLIHGLSRCGKIHEALEVFSELQ 620
+ NV + + R L L+ VLI G+ GK AL+V
Sbjct: 127 ------AKYNVSRLQPYLKLRQALLE-----LRPAKNVLIDGVLGSGKTWVALDV---CL 172
Query: 621 DKGLV---PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK-S 676
+ I + +L C + ++ +K+ I PN + + D
Sbjct: 173 SYKVQCKMDFKIFWLNL--KNCNS--PETVLEMLQKLL-YQIDPN---WTSRSDHSSNIK 224
Query: 677 GELERARELFDGIFAKGLTPTV------VTYTTIIDGY---CK------------SGNLT 715
+ + + V + + CK +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 716 EAFQLVNEMPSRGVTPD-------NFVYCTLVD----GCCRDGNMEKALSLFLEMVQKGL 764
+ + S +TPD ++ C D N + LS+ E ++ GL
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TTN-PRRLSIIAESIRDGL 341
Query: 765 A-----STSSFNALLNGLCKSQKIFEAN---KLLEDMA----DKHITPNHVTYTIL---I 809
A + + L + S + E K+ + ++ HI +++ +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--LLSLIWFDV 399
Query: 810 DYHCKAGTMKDAEHLLVEMQKR-VLKPNFRTYTSLLHG-YAGI-GKRSEMFALFDEMVE- 865
D ++ ++ K +++ + T + Y + K +AL +V+
Sbjct: 400 IK-------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 866 ----RGVEP--------DGVIYSMMVDAY-LKEGNMMKTIKLVDEMFL---------RGL 903
+ + D YS + + LK + + L +FL R
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 904 VLNQNVYTSLANSL----------CKEEEFYKVLKLLDEMGD-----KEIKLSHATCCIL 948
N S+ N+L C + Y+ +L++ + D +E + +L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYE--RLVNAILDFLPKIEENLICSKYTDLL 568
Query: 949 -ISSVYEAGNI-DKATR 963
I+ + E I ++A +
Sbjct: 569 RIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 79/518 (15%), Positives = 147/518 (28%), Gaps = 181/518 (34%)
Query: 11 SFIRTRTKISRLKSMQ-----FSTSQTSLHSN--------EEAAKEITNFL--------- 48
+ + + L+ +Q + TS + E+ L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 49 -------NENHWESLIESSKL----RNKLNPDVVQSVLQHSHVN--------DPKRLLGF 89
N W + S K+ R K D + S +H++ P +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSL 306
Query: 90 F-NWTSTQLG-IPPNLHSFSYLAMMLCNSRLFGAA--SGV----------IDRMIATRRS 135
+ + +P + + + + + + G+ D++ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL-----SIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 136 SYQILESFLMCYRERNVSGGVVFEML-IDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCC 194
S +LE YR+ F+ L + F A I P
Sbjct: 362 SLNVLEPAE--YRKM-------FDRLSV-------FPPSAHI------------P----- 388
Query: 195 NSILNDLLRANKLKLFW---KVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFE 251
L L W DVM+ ++ Y SL+ + + + E
Sbjct: 389 ---------TILLSLIWFDVIKSDVMVVVN---KLHKY-SLVEKQPKESTISIPS-IYLE 434
Query: 252 MEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP 311
++ K ++ + L H+ +V D Y++ F + D Y
Sbjct: 435 LKVK---LENEYAL-----HRSIV-DH--YNIP-KTFDSD----DLIPPYLDQY------ 472
Query: 312 NEVVYTTLINGF-MKQGNLQEAFRLKNEMVTFGIKLNL-FTYNALIGGICKAGEIEKAKG 369
Y+ + G +K E L + L+ F L I A G
Sbjct: 473 ---FYSHI--GHHLKNIEHPERMTLFRM-----VFLDFRF----LEQKIRHDSTAWNASG 518
Query: 370 LMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLC 429
+ L+ + Y I +N+ YE LV+ L P N+I
Sbjct: 519 SILNTLQ-----QLKFYKPYI----CDND--PKYERLVNAILDFL-PKIEE-NLIC---S 562
Query: 430 RCSDLEGACRVFEEMIACGL-KPNNFVYTTLIQAHLRQ 466
+ +DL + L + ++ +AH +Q
Sbjct: 563 KYTDL----------LRIALMAEDEAIF---EEAH-KQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 6e-06
Identities = 48/377 (12%), Positives = 107/377 (28%), Gaps = 118/377 (31%)
Query: 630 TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG-ELERARELFDG 688
Y ++S F + F+ K + + +I++ ID + S + LF
Sbjct: 17 QYKDILSVF-EDAFVDN---FDCKDVQD-MPKSILS-KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 689 IFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGN 748
+ +K + + F V E + + Y L+
Sbjct: 71 LLSKQ------------------EEMVQKF--VEE----VLRIN---YKFLMS------- 96
Query: 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTIL 808
+ E Q + T + + L ++F +V+
Sbjct: 97 -----PIKTEQRQPSM-MTRMYIEQRDRLYNDNQVF--------------AKYNVS---- 132
Query: 809 IDYHCKAGTMKDAEHLLVEMQKRV--LKPNFRTYTSLLHGYAGIGKRS---EMFALFDEM 863
+++++ + L+P L+ G G GK +
Sbjct: 133 ------------RLQPYLKLRQALLELRPA--KNV-LIDGVLGSGKTWVALD--VCLSYK 175
Query: 864 VERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS------- 916
V+ + D I+ +L N +++ + ++ N +TS ++
Sbjct: 176 VQC--KMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLR 226
Query: 917 ----------LCKEEEFYKVLKLLDEMGDKE-IKLSHATCCILI----SSVYEAGNIDKA 961
L K + + L +L + + + + +C IL+ V + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 962 TRFLESMIKFGWVADST 978
T D
Sbjct: 287 THISLDHHSMTLTPDEV 303
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 53/502 (10%), Positives = 125/502 (24%), Gaps = 78/502 (15%)
Query: 223 TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYS 282
T + L + G+ A+ +L + + + + ++
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173
Query: 283 LMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF 342
+ F K+++ + L+ D + + + N A E +
Sbjct: 174 GETNPFRKDEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229
Query: 343 GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKA 402
K ++ L+ + E ++ D SL + +
Sbjct: 230 DAK-CYEAFDQLVSNHLLTADEEWDL-VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287
Query: 403 YELLVDMKK--RNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNF-VYTTL 459
D L ++ + L S + +++ + P N VY
Sbjct: 288 LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLH 345
Query: 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLIS------------GLC--KAKKME 505
+ + + N L+ G+ K+
Sbjct: 346 LASLHESGEKNKLY---------------LISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390
Query: 506 DARSCLVEMTANGLKPN-LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPND------ 558
+AR + ++ + P + F + G A + +
Sbjct: 391 EARRYFSK--SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLF 446
Query: 559 --IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRC----GKIHEA 612
+ + L GN+ A + + +L++ L + A
Sbjct: 447 LGMQHMQL-------GNILLANEYLQ--SSYALFQY---DPLLLNELGVVAFNKSDMQTA 494
Query: 613 LEVFS---ELQDKGLVPD---VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV-T 665
+ F L K + T+++L + K A + ++ N
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANV 552
Query: 666 YNALIDGLCKSGELERARELFD 687
+ A+ A
Sbjct: 553 HTAIALVYLHKKIPGLAITHLH 574
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 30/267 (11%)
Query: 326 QGNLQEAFRLKNEMVTF----GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381
G+ Q+ + ++ ++F Y A + + + ++ P
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVL----DEIKPSSAP 63
Query: 382 DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVII-NGLCRCSDLEGACRV 440
+ Q E + L R++ T T ++ + + + A R
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 441 FEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPD---VFCYNSLISG 497
+ + +Q L+ +R + A LK M + D + +S
Sbjct: 124 LHQGD------SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL 175
Query: 498 LCKAKKMEDARSCLVEMTA-NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAP 556
+K++DA EM L A + G +AA+ QE L+
Sbjct: 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC--HMAQGRWEAAEGVLQEALD--KDS 231
Query: 557 NDI-IYTTLIDGHCKEGNVKEAFSTFR 582
L+ G E + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYL 258
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 38/286 (13%), Positives = 79/286 (27%), Gaps = 59/286 (20%)
Query: 228 TYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDG 287
T+ + ++ G + Q + +KV + E F S ++ P+
Sbjct: 96 TWGNYAWVYYHMGRLSDVQIYV----DKVKHVCEKF----SSPYRIESPELDCEEGWTRL 147
Query: 288 FCKNKRLEDAKLLLKKMYDLKLNPNEV-VYTTLINGFMKQGNL---QEAFRLKNEMVTFG 343
C + E AK+ +K L+ P + L + N Q A + +
Sbjct: 148 KCGGNQNERAKVCFEKA--LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-- 203
Query: 344 IKLNLFTYNALIGGICKA-----GEIEKAKGLMTEMLRLGINPD-TQTYNSLI-----EG 392
+ + L+ E + + L+ E L P T S +
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKD 261
Query: 393 CYRE-------------------NNMAKAY-ELLVDMKKRNLSPTAYTCNVIINGLCRCS 432
+ + Y + + + ++
Sbjct: 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL-------E 314
Query: 433 DLEGACRVFEEMIACGLKPNNF-VYTTLIQAHLRQNRFEEAINILK 477
+ A ++ N F V + L H +++EEA +
Sbjct: 315 LIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQ 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 68/384 (17%), Positives = 140/384 (36%), Gaps = 52/384 (13%)
Query: 325 KQGNLQEAFRLKNEMVTFGIKLN---LFTYNALIGGICKA-GEIEKAKGLMTEMLRLGIN 380
+ G+ + A R ++ + L+ I ++++ T ++ N
Sbjct: 11 QAGDFEAAERHCMQL----WRQEPDNTGVLL-LLSSIHFQCRRLDRSAHFSTLAIK--QN 63
Query: 381 PD-TQTYNSLIEGCYRENNMAKA---YELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEG 436
P + Y++L + +A Y + +K Y + L D+EG
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--IDGY--INLAAALVAAGDMEG 119
Query: 437 ACRVFEEMIACGLKPNNF-VYTTLIQAHLRQNRFEEAINILKGMTGKGVL--PD-VFCYN 492
A + + + P+ + V + L R EEA K + P+ ++
Sbjct: 120 AVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYL----KAIETQPNFAVAWS 173
Query: 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTY----GAFIREYTKTGNMQAADRYFQE 548
+L ++ A + L PN G + A +
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNV---LKEARIFDRAVAAYLR 228
Query: 549 MLNCGIAPND-IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDL-KTYSVLIHGLSRC 606
L+ ++PN +++ L + ++G + A T+R + + P Y L + L
Sbjct: 229 ALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEK 284
Query: 607 GKIHEALEVFSE-LQDKGLVPD-VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV 664
G + EA + ++ L+ L P + ++L + +QG I+EA +L+ K E + P
Sbjct: 285 GSVAEAEDCYNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA 339
Query: 665 -TYNALIDGLCKSGELERARELFD 687
++ L L + G+L+ A +
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYK 363
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1012 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 2e-06
Identities = 51/363 (14%), Positives = 113/363 (31%), Gaps = 17/363 (4%)
Query: 433 DLEGACRVFEEMIACGLKPNNF-VYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVF-C 490
D E A R ++ +P+N V L H + R + + + + P +
Sbjct: 14 DFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEA 69
Query: 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML 550
Y++L + + ++++A A Y +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 551 NCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610
+ +A +S L + G+I
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVFNAQGEIW 186
Query: 611 EALEVFSELQDKGLVPDVI-TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNAL 669
A+ F + L P+ + Y +L + + A + + + V + L
Sbjct: 187 LAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNL 243
Query: 670 IDGLCKSGELERARELFDGIFAKGLTPTVV-TYTTIIDGYCKSGNLTEAFQLVNEMPSRG 728
+ G ++ A + + L P Y + + + G++ EA N
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 729 VTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788
T + + L + GN+E+A+ L+ + ++ ++ + L + L + K+ EA
Sbjct: 302 PTHADSLNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 789 LLE 791
+
Sbjct: 361 HYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 21/384 (5%)
Query: 459 LIQAHLRQNRFEEAINILKGMTGKGVLPD-VFCYNSLISGLCKAKKMEDARSCLVEMTAN 517
L + FE A + + PD L S + ++++ + A
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AI 60
Query: 518 GLKPNLY-TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576
P L Y Y + G +Q A +++ L D
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLIS 636
+ + L +++ + + +A + + + +S+L
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGC 177
Query: 637 GFCKQGFIKEAFQLHEKMCESGITPNIV-TYNALIDGLCKSGELERARELFDGIFAKGLT 695
F QG I A EK + PN + Y L + L ++ +RA + +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234
Query: 696 PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALS 754
V + + Y + G + A + + P YC L + G++ +A
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV-TYTILIDYHC 813
+ ++ S N L N + I EA +L + P ++ L
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQ 350
Query: 814 KAGTMKDAEHLLVEMQKRVLKPNF 837
+ G +++A E + + P F
Sbjct: 351 QQGKLQEALMHYKEAIR--ISPTF 372
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1012 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.73 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.65 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.64 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.58 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.19 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.16 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.15 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.02 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.95 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.77 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.85 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.2 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.49 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-30 Score=188.63 Aligned_cols=379 Identities=13% Similarity=0.053 Sum_probs=178.0
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99629967899999999729999889989999999982499999999999997599997897899999999964998999
Q 001797 568 HCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEA 647 (1012)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 647 (1012)
+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...+.+.....+. +..++..+...+...|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCC
T ss_conf 998699999999999999868-998999999999999869999999999999985999-899999999996420002222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999998889987866599999999953999999999999886899989999999999999729998999999983329
Q 001797 648 FQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR 727 (1012)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 727 (1012)
+..+....+... ................+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 222221211222-222222222222222222222222211122222-222222222222221100013567888874025
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99989999999999998069999999999999985998645699999999831869999999999886899989778999
Q 001797 728 GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTI 807 (1012)
Q Consensus 728 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 807 (1012)
.+.+...+..+...+...|++++|...++++++..|....++..++..+...|++++|...+++..... +.....+..
T Consensus 165 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 242 (388)
T d1w3ba_ 165 -QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf -861068998636301024719999999999998494649999997155220052999999999857775-547999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999952998899999999997799977677999999998069966899999999983988898899999999996299
Q 001797 808 LIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 808 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 887 (1012)
++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++.+... .+.+...+..++.++...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf 999999878999999999999984-9998999999999999748799999999865404-87300101579999998789
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCC
Q ss_conf 5789999999998398668899999999875006487899999999547998798879999999-986199
Q 001797 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGN 957 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~ 957 (1012)
+++|+..++++++.. |.+..++..++.++...|++++|++.++++++ +.|+.+..+..++. |.+.||
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999868-89899999999999985999999999999997--099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-29 Score=185.83 Aligned_cols=383 Identities=14% Similarity=0.098 Sum_probs=237.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999950998999999999998999989998999999999629967899999999729999889989999999982499
Q 001797 529 FIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGK 608 (1012)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 608 (1012)
+...+.+.|++++|...++.+++.. |.+...+..++..+...|++++|...++.+++.. +.+..++..++..+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC
T ss_conf 9999998699999999999999868-9989999999999998699999999999999859-9989999999999642000
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999759999789789999999996499899999999998889987866599999999953999999999999
Q 001797 609 IHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDG 688 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (1012)
+++|+..+......... ...............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 22222222212112222-22222222222222222222222211122222-22222222222222110001356788887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 88689998999999999999972999899999998332999989999999999998069999999999999985998645
Q 001797 689 IFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 689 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
..... +.....+..+...+...|++++|...+++..... +.+...+..++..+...|++++|...+++.....+....
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 40258-6106899863630102471999999999999849-464999999715522005299999999985777554799
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999983186999999999988689998977899999999952998899999999997799977677999999998
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYA 848 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 848 (1012)
.+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|...++..... .+.+...+..++..+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHH
T ss_conf 99999999998789999999999999849-998999999999999748799999999865404-8730010157999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 0699668999999999839888-9889999999999629957899999999983986688999999998750064
Q 001797 849 GIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
..|++++|+..++++++ ..| +...+..++.+|...|++++|+..++++++.. |.+...|..++.+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf 87899999999999998--688989999999999998599999999999999709-9989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.6e-20 Score=128.34 Aligned_cols=127 Identities=7% Similarity=-0.005 Sum_probs=79.8
Q ss_pred HHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHH
Q ss_conf 9529988999999999977-999776779999999980699668999999999839888-98899999999996299578
Q 001797 813 CKAGTMKDAEHLLVEMQKR-VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 890 (1012)
...+...+|...+.++... ....+...+..++..+...|++++|+..+++++.. .| +...+..++.++...|++++
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~ 224 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 224 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCHH
T ss_conf 8765799999999999997130122211103688888888775500211122222--22221110133301221111013
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 999999999839866889999999987500648789999999954799879887
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
|+..++++++.. |.+..+|..++.+|...|++++|++.++++++ +.|++..
T Consensus 225 A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~ 275 (323)
T d1fcha_ 225 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRG 275 (323)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC--
T ss_pred HHHHHHHHHHHH-HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 788877899884-32499999999999987899999999999997--0975700
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-19 Score=126.36 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 96689999999998398-88988999999999962995789999999998398668899999999875006487899999
Q 001797 852 KRSEMFALFDEMVERGV-EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLL 930 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 930 (1012)
.+.++...+.++++... .++...+..++..+...|++++|+..+++++... |.+...|..++.++...|++++|++.+
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 7999999999999971301222111036888888887755002111222222-222111013330122111101378887
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHH
Q ss_conf 999547998798879999999-9861997789999999997
Q 001797 931 DEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 931 ~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+++++ +.|+.+..+..++. |...|++++|+..+++.++
T Consensus 230 ~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 78998--8432499999999999987899999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-14 Score=98.25 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999980699999999999999859986456999999998318-69999999999886899989778999999999
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ-KIFEANKLLEDMADKHITPNHVTYTILIDYHC 813 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 813 (1012)
.+..+...+.+.+.+++|+..++++++.+|....+|+..+.++...| ++++|+..++..++.. +.+..+|..++..+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999999588669999999999987988769999999999983767999999999999887-742268988758888
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC-----
Q ss_conf 529988999999999977999776779999999980699668999999999839888-98899999999996299-----
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGN----- 887 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 887 (1012)
..|++++|+..+.++.+. .+.+...|..++..+...|++++|+..++++++ +.| +...|..++.++...+.
T Consensus 124 ~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 505378899887555432-100468899887788888866789999999998--79744999988999998745631023
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf -578999999999839866889999999987500648789999999954
Q 001797 888 -MMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 888 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+++|+..+.++++.. |.+...|..++..+...| .+++.+.++++.+
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 5477679999999849-885699999877988627-1889999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.6e-15 Score=98.78 Aligned_cols=212 Identities=7% Similarity=0.000 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999997299989999999833299998-9999999999998069-999999999999985998645699999999
Q 001797 700 TYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRDG-NMEKALSLFLEMVQKGLASTSSFNALLNGL 777 (1012)
Q Consensus 700 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 777 (1012)
.+..+...+.+.+.+++|+.++++++.. .| +...|.....++...| ++++|+..++.+++.+|....+|..++.++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999588669999999999987--98876999999999998376799999999999988774226898875888
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-----
Q ss_conf 831869999999999886899989778999999999529988999999999977999776779999999980699-----
Q 001797 778 CKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGK----- 852 (1012)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 852 (1012)
...|++++|++.++++++. -+.+...|..++..+...|++++|+..++++++. .+.+...|..++..+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-DVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8505378899887555432-1004688998877888888667899999999987-9744999988999998745631023
Q ss_pred -HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q ss_conf -668999999999839888-9889999999999629957899999999983986-68899999999875
Q 001797 853 -RSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLC 918 (1012)
Q Consensus 853 -~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 918 (1012)
+++|+..+.++++ ..| +...|..+...+. ....+++...++...+.... .+...+..++.+|.
T Consensus 201 ~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 54776799999998--49885699999877988-62718899999999972877578999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3e-12 Score=83.91 Aligned_cols=93 Identities=8% Similarity=-0.034 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q ss_conf 99999980699668999999999839888---9889999999999629957899999999983----98-6688999999
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEP---DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR----GL-VLNQNVYTSL 913 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l 913 (1012)
.++..+...|++++|...+.+........ ....+..++.++...|++++|...++++... +. +.....+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999986044898999999999762246667778899999999875879999999999998876426674799999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 998750064878999999995
Q 001797 914 ANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 914 ~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+.+|...|++++|.+.+++++
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998789999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=6.7e-13 Score=87.68 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHH
Q ss_conf 99999995299889999999999779997---767799999999806996689999999998----39888-98899999
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKP---NFRTYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEP-DGVIYSMM 878 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l 878 (1012)
..+..+...|+.++|...+.+........ ....+..++..+...|++++|...+++++. .+..| ....+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999986044898999999999762246667778899999999875879999999999998876426674799999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999962995789999999998
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+.+|...|++++|.+.+++.++
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987899999999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=7.8e-15 Score=99.02 Aligned_cols=233 Identities=7% Similarity=-0.076 Sum_probs=156.4
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCHHHH
Q ss_conf 72999899999998332999989999999999998069--99999999999998599864569-9999999831869999
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDG--NMEKALSLFLEMVQKGLASTSSF-NALLNGLCKSQKIFEA 786 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 786 (1012)
..|.+++|+.+++..... .+.+...+..+..++...+ +++++...+.++++.+|.....+ ...+..+...+.+++|
T Consensus 85 ~~~~~~~al~~~~~~l~~-~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 877899999999999986-8886798988648998843042899999999998559212111105789998744552899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999988689998977899999999952998899999999997799977677999999998069966899999999983
Q 001797 787 NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER 866 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 866 (1012)
+..++.+++.+ +.+...|..++.++...|++++|...+.+.... .|.. ......+...+..+++...+...+..
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999988718-987999999999999826889899988776776--8999---99999998824414889999988771
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 98889889999999999629957899999999983986688999999998750064878999999995479987988799
Q 001797 867 GVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 867 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
. .+....+..++..+...|+..+|+..+.+..... |.+..++..++.++...|++++|++.++++.+ ++|+...++
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~ 313 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL 313 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHH
T ss_conf 8-6605678879999999866999999999887629-13799999999999878999999999999998--796639999
Q ss_pred HHHHH-HH
Q ss_conf 99999-98
Q 001797 947 ILISS-VY 953 (1012)
Q Consensus 947 ~l~~~-~~ 953 (1012)
.-++. +.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.1e-14 Score=96.45 Aligned_cols=204 Identities=10% Similarity=-0.079 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999980699999999999999859986456999999998318699999999998868999897789999999995
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 814 (1012)
++..++..|...|++++|+..|+++++..|....++..++.+|...|++++|+..|+++++.. +.+...+..++.++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 999999999987999999999998543499988999600427888777887523446899987-6111158889999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC----CCHHH
Q ss_conf 29988999999999977999776779999999980699668999999999839888988999999999962----99578
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE----GNMMK 890 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~ 890 (1012)
.|++++|...+++..+.. +.+......+...+...+..+.+..+...... ..+....+. ++..+... +..+.
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 766799999999998653-00078889999999885358789999987640--314443455-77888888777778999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999983986688999999998750064878999999995479987988799
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
+...+....... +.....|..++.++...|++++|.+.+++++. ..|++...+
T Consensus 194 ~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 246 (259)
T d1xnfa_ 194 LKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNFVEH 246 (259)
T ss_dssp HHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHH
T ss_conf 999999866408-45099999999999987899999999999998--399779999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1e-14 Score=98.33 Aligned_cols=229 Identities=6% Similarity=-0.053 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf 9999999999886899989999999999999729--9989999999833299998999999-999999806999999999
Q 001797 679 LERARELFDGIFAKGLTPTVVTYTTIIDGYCKSG--NLTEAFQLVNEMPSRGVTPDNFVYC-TLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 679 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~ 755 (1012)
+++|..+++.+.... +.+...|..+..++...+ ++++|+..+.++.... +++...+. .....+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999868-886798988648998843042899999999998559-212111105789998744552899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999859986456999999998318699999999998868999897789999999995299889999999999779997
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
++.+++.+|.+..+|..++.++...|++++|...+....+. .|.. ......+...+..+++...+.+.... .++
T Consensus 167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~-~~~ 240 (334)
T d1dcea1 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG-RAE 240 (334)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS-CCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHCCHHHHHHHHHHHHHH-CCC
T ss_conf 99988718987999999999999826889899988776776--8999---99999998824414889999988771-866
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 76779999999980699668999999999839888-98899999999996299578999999999839866889999999
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLA 914 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 914 (1012)
+...+..++..+...|++++|...+.+..+ ..| +...+..++.++...|++++|+..++++.+.. |.+...|..|.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~ 317 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLR 317 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 056788799999998669999999998876--291379999999999987899999999999999879-66399999999
Q ss_pred HHHH
Q ss_conf 9875
Q 001797 915 NSLC 918 (1012)
Q Consensus 915 ~~~~ 918 (1012)
..+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9986
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.3e-11 Score=80.19 Aligned_cols=221 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999997599997897899999999964998--------------999999999988899878665999999999
Q 001797 609 IHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFI--------------KEAFQLHEKMCESGITPNIVTYNALIDGLC 674 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 674 (1012)
.+.+..+|+++....+. ++..|...+..+...++. +++..++++.++...+.+...+...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999987779-99999999999987073688777876310245999999999998749987999999999998
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 53999999999999886899989999999999999729998999999983329999899999999999980699999999
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
..|+++.|..+|++++..........|...+....+.|+.+.|..+++.+..................+...|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 61338999999999998715786999999999999827868899999999980888679999999999876557789999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999985998645699999999831869999999999886---89998977899999999952998899999999997
Q 001797 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD---KHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
+|+.++...|.+...+...+......|+.+.|..+|++.+. .........|...+......|+.+.+..+++++.+
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999998610038899999999998698689999999999827898689999999999999984999999999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.1e-12 Score=86.35 Aligned_cols=196 Identities=12% Similarity=-0.037 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997299989999999833299998999999999999806999999999999998599864569999999983
Q 001797 700 TYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCK 779 (1012)
Q Consensus 700 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 779 (1012)
.+..+...|.+.|++++|+..|++.+.. .+-+..++..++.++...|++++|+..|+++++..|....++..++.++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999879999999999985434-999889996004278887778875234468999876111158889999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH----HH
Q ss_conf 18699999999998868999897789999999995299889999999999779997767799999999806996----68
Q 001797 780 SQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKR----SE 855 (1012)
Q Consensus 780 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~ 855 (1012)
.|++++|...++..++.. +.+......+...+...+..+.+..+....... .+....+. ++..+...... +.
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 766799999999998653-000788899999998853587899999876403--14443455-77888888777778999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999839888-98899999999996299578999999999839
Q 001797 856 MFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 856 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
+...+..... ..| ....+..++..|...|++++|+..+++++...
T Consensus 194 ~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 194 LKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999998664--084509999999999998789999999999999839
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=1.7e-09 Score=67.72 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----H
Q ss_conf 56999999998318699999999998868-----9998977899999999952998899999999997799977-----6
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADK-----HITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN-----F 837 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~ 837 (1012)
..|...+..|...+++++|.+.|.++.+. ..+....+|..++.+|.+.|++++|...+++......... .
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999886999999999999999987599889999999999999980885888999997667765325320589
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHH-CCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH----
Q ss_conf 7799999999806-996689999999998-3988898----89999999999629957899999999983986688----
Q 001797 838 RTYTSLLHGYAGI-GKRSEMFALFDEMVE-RGVEPDG----VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQ---- 907 (1012)
Q Consensus 838 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 907 (1012)
.++..++..+... |++++|+..++++.+ .....+. .++..++.++...|++++|+..++++.... +.+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~-~~~~~~~~ 196 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 99999888676478789999889999999987337603334688999999998173999999999999868-13324555
Q ss_pred ---HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Q ss_conf ---999999998750064878999999995479987------98879999999986--1997789999999997
Q 001797 908 ---NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL------SHATCCILISSVYE--AGNIDKATRFLESMIK 970 (1012)
Q Consensus 908 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 970 (1012)
..+...+.++...|++..|...++++.+ +.| .......++..+.. .+++++|+..|+++.+
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 6999999999999984659999999999997--59774443999999999999983689999999999988754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.7e-09 Score=65.21 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999998069999999999999985998645699999999831869999999999
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLED 792 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 792 (1012)
++..++.++...|++++|++.|+++++.+|....+|..++.++.+.|++++|...|++
T Consensus 38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~k 95 (192)
T d1hh8a_ 38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999999858914678789999998552346678899999854249999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.5e-09 Score=68.05 Aligned_cols=120 Identities=12% Similarity=0.116 Sum_probs=80.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999980699668999999999839888-988999999999962995789999999998398668899999999875
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+...++.+.+.|++++|+..|+++++ +.| +...|..++.++...|++++|+..++++++.. |.+..+|..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 99999999995899999998660211--000113332456788874054212888899999875-446687799999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHCCCHHHHHHH
Q ss_conf 006487899999999547998798879999999---9861997789999
Q 001797 919 KEEEFYKVLKLLDEMGDKEIKLSHATCCILISS---VYEAGNIDKATRF 964 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~---~~~~g~~~~A~~~ 964 (1012)
..|++++|.+.++++.. +.|+++.....+.. ....+.+++|...
T Consensus 90 ~~g~~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 94999999998999987--299979999999999999998989999757
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=7.1e-11 Score=75.84 Aligned_cols=55 Identities=11% Similarity=-0.052 Sum_probs=18.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99981399989999999998599998841199999999814998789999999998
Q 001797 391 EGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIA 446 (1012)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 446 (1012)
..+...|++++|...|.+..+.. |.+...|+.++..+...|+..+|...|.+.+.
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99998024789999999999878-99659999999999986999999999999981
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.14 E-value=9.3e-08 Score=57.61 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 957899999999983
Q 001797 887 NMMKTIKLVDEMFLR 901 (1012)
Q Consensus 887 ~~~~A~~~~~~~~~~ 901 (1012)
+.++|+.++++..+.
T Consensus 197 d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 197 NFKEALARYSKACEL 211 (265)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 034445467665303
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.7e-11 Score=78.31 Aligned_cols=59 Identities=12% Similarity=-0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999963997799999999998699988666999999998139998999999999859
Q 001797 353 ALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKR 412 (1012)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (1012)
.++..+...|++++|...+.+..... +.+...|+.+...+...|+..+|...|.+....
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999998024789999999999878-996599999999999869999999999999817
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.3e-08 Score=61.20 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999987500648789999999954
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.++..++.++...|++++|.+.+.++..
T Consensus 121 e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 121 EVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999997899999999999983
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.8e-09 Score=67.57 Aligned_cols=97 Identities=8% Similarity=-0.082 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf 8999999999999806999999999999998599864569999999983186999999999988689998-977899999
Q 001797 731 PDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILI 809 (1012)
Q Consensus 731 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 809 (1012)
|+...+...+..+...|++++|+..|.++++..|..+.+|..++.+|.+.|++++|+..++.+++. .| +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 649999999999998699999999999999859998999981789874100000124788888871--887389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q ss_conf 99995299889999999999
Q 001797 810 DYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.++...|++++|+..|+++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
T ss_conf 99998799999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=5e-10 Score=70.91 Aligned_cols=47 Identities=17% Similarity=-0.061 Sum_probs=14.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 80699999999999999859986456999999998318699999999
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLL 790 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 790 (1012)
...|++++|+..|+++++..|....+|..++.+|...|++++|...|
T Consensus 49 ~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~ 95 (201)
T d2c2la1 49 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95 (201)
T ss_dssp HHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 41000001247888888718873899999999999879999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=7e-09 Score=64.17 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999980699668999999999839888-9889999999999629957899999999983986688999999998750
Q 001797 841 TSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCK 919 (1012)
Q Consensus 841 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 919 (1012)
...+..+...|++++|+..|.++++ ..| ++..|..++.++...|++++|+..++++++.. |.+...|..++.++..
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf 9999999996999999999999886--199601343000110110000112100134677740-2202677889999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 064878999999995479987988799999999
Q 001797 920 EEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 920 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 952 (1012)
.|++++|+..++++.+ +.|+++.....++.+
T Consensus 84 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLK--HEANNPQLKEGLQNM 114 (117)
T ss_dssp TTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 1279999999999998--498989999999978
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.02 E-value=3e-07 Score=54.61 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 778999999999779
Q 001797 958 IDKATRFLESMIKFG 972 (1012)
Q Consensus 958 ~~~A~~~~~~~~~~~ 972 (1012)
.++|.+.+++....|
T Consensus 234 ~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 234 EKQAIENFKKGCKLG 248 (265)
T ss_dssp STTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=6.6e-08 Score=58.49 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=32.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHH
Q ss_conf 999529988999999999977999776779999999980699668999999999839888-9889999999999629957
Q 001797 811 YHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMM 889 (1012)
Q Consensus 811 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 889 (1012)
.+.+.|++++|+..|+++++. .+.+...|..++.++...|++++|...|+++++ +.| +...|..++.++...|+++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 999958999999986602110-001133324567888740542128888999998--75446687799999999949999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999999983
Q 001797 890 KTIKLVDEMFLR 901 (1012)
Q Consensus 890 ~A~~~~~~~~~~ 901 (1012)
+|+..++++...
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999989999872
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=9.2e-08 Score=57.63 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999962995789999999998398668899999999875006487899999999547998798879999999
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 951 (1012)
|..++.+|.+.|++++|+..+++++... |.+..+|..++.++...|++++|+..++++.+ +.|+++.....+..
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 9999999886421101100000001002-23103467779999872229999999999997--29898999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.78 E-value=4.2e-07 Score=53.76 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999962995789999999998398668899999999875006487899999999547998798879999999
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 951 (1012)
+..++.+|...|++++|+..+++++... |.+..+|..++.++...|++++|++.+.+++. +.|+++.....+..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 9849999877622011000223222013-10488999889999882789999999999998--59898999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6.5e-07 Score=52.65 Aligned_cols=84 Identities=12% Similarity=-0.033 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 79999999980699668999999999839888-98899999999996299578999999999839866889999999987
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
+|..++.+|.+.|++++|+..++.+++ +.| +...+..++.+|...|++++|+..++++++.. |.+..+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 999999998864211011000000010--022310346777999987222999999999999729-89899999999999
Q ss_pred HCCCCHHH
Q ss_conf 50064878
Q 001797 918 CKEEEFYK 925 (1012)
Q Consensus 918 ~~~g~~~~ 925 (1012)
...+...+
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.76 E-value=4.3e-08 Score=59.58 Aligned_cols=87 Identities=14% Similarity=0.049 Sum_probs=36.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999980699668999999999839888-9889999999999629957899999999983986688999999998750064
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
+..+.+.|++++|...++++++ ..| +...|..++.++...|++++|+..++++++.. |.+..+|..++.+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCC
T ss_conf 9999987605899998861011--211110012335456410125877410000011111-1000003789999999789
Q ss_pred HHHHHHHHHHH
Q ss_conf 87899999999
Q 001797 923 FYKVLKLLDEM 933 (1012)
Q Consensus 923 ~~~A~~~~~~~ 933 (1012)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.74 E-value=4.8e-07 Score=53.44 Aligned_cols=75 Identities=9% Similarity=-0.052 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999999999962995789999999998398668899999999875006487899999999547998798879999999
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 951 (1012)
++..++.+|.+.|++++|+..++++++.. |.+..+|..++.++...|++++|+..+.++++ +.|++......+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 99619999998465301110100010000-00012467768999996899999999999998--29898999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.67 E-value=2.4e-07 Score=55.15 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q ss_conf 99999999962995789999999998398668899999999875006487899999999547998798879999999-98
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VY 953 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~ 953 (1012)
+..++..+.+.|++++|+..+++++... |.+..+|..++.++...|++++|+..++++++ +.|+....+..++. |.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHH
T ss_conf 9999999998760589999886101121-11100123354564101258774100000111--11100000378999999
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 6199778999999999
Q 001797 954 EAGNIDKATRFLESMI 969 (1012)
Q Consensus 954 ~~g~~~~A~~~~~~~~ 969 (1012)
..|++++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
T ss_conf 9789999999999981
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.64 E-value=4e-07 Score=53.92 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 999999999629957899999999983986688999999998750064878999999995479987988799
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
+..++.++.+.|++++|+..++++++.. |.+..+|..++.++...|++++|+..+.++++ +.|++....
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~ 148 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQ 148 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHH
T ss_conf 9989999986402101366655443100-02236777699999980479999999999998--598999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.4e-07 Score=56.54 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 9999980699668999999999839888-9889999999999629---95789999999998398668-89999999987
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEG---NMMKTIKLVDEMFLRGLVLN-QNVYTSLANSL 917 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 917 (1012)
+++.+...+++++|.+.|++++. ..| ++.++..++.++.+.+ +.++|+.++++++.....++ ..++..++.+|
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98873699999999999999883--2999899999999999985126789999999999986069931999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 5006487899999999547998798879999
Q 001797 918 CKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 918 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
...|++++|++.++++++ +.|++.....+
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCCHHHHHH
T ss_conf 997316999999999997--69098999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.61 E-value=1.2e-06 Score=51.00 Aligned_cols=84 Identities=6% Similarity=-0.052 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 779999999980699668999999999839888-9889999999999629957899999999983986688999999998
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS 916 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 916 (1012)
..+..++.++.+.|++++|+..+.++++ +.| +...|..++.++...|++++|+..++++++.. |.+..+...+..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 9999899999864021013666554431--000223677769999998047999999999999859-8999999999999
Q ss_pred HHCCCCHH
Q ss_conf 75006487
Q 001797 917 LCKEEEFY 924 (1012)
Q Consensus 917 ~~~~g~~~ 924 (1012)
........
T Consensus 155 ~~~l~~~~ 162 (169)
T d1ihga1 155 KQKIKAQK 162 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999899
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.60 E-value=5.4e-06 Score=47.27 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 79999999980699668999999999839888-98899999999996299578999999999839866889999999987
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
.|..++.+|...|++++|+..++++++ +.| +...+..++.++...|++++|+..++++++.. |.+..+...+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 998499998776220110002232220--131048899988999988278999999999999859-89899999999999
Q ss_pred HCCCCH
Q ss_conf 500648
Q 001797 918 CKEEEF 923 (1012)
Q Consensus 918 ~~~g~~ 923 (1012)
...+..
T Consensus 143 ~~~~~~ 148 (168)
T d1kt1a1 143 KKAKEH 148 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999869
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.56 E-value=3.7e-06 Score=48.27 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 79999999980699668999999999839888-988999999999962995789999999998398668899999999
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
++..++.+|.+.|++++|++.+.++++ +.| +...|..++.++...|++++|+..++++++.. |.+..+...+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 996199999984653011101000100--000001246776899999689999999999999829-898999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=5.4e-07 Score=53.12 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 878999999995479987988799999
Q 001797 923 FYKVLKLLDEMGDKEIKLSHATCCILI 949 (1012)
Q Consensus 923 ~~~A~~~~~~~~~~g~~p~~~~~~~l~ 949 (1012)
+++|.+.++++++ +.|++..++..+
T Consensus 102 ~~~A~~~~~kal~--l~P~~~~~~~~L 126 (145)
T d1zu2a1 102 FDLATQFFQQAVD--EQPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCC--CCCCHHHHHHHH
T ss_conf 7876312110002--598889999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=9.3e-07 Score=51.75 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999980699668999999999839888-988999999999962995789999999998
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
++..+...|++++|+..|.++++. .| +...+..++.+|...|++++|+..++++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999859999999999999884--964589998688999881860778999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.43 E-value=9.9e-07 Score=51.60 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 0699668999999999839888-988999999999962995789999999998398668899999999875006487
Q 001797 849 GIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFY 924 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 924 (1012)
..|++++|+..+++.++ ..| +...+..++..|+..|++++|...++.+.+.. |.+...+..++..+...+..+
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCH
T ss_conf 88899999999999999--789999999999999998799999999999999869-973899999999998346637
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.36 E-value=6.7e-07 Score=52.60 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999999999998599864569999999983186999999999988
Q 001797 747 GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 747 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 794 (1012)
|++++|+..+++.++..|.+...+..++..++..|++++|...++...
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999999999789999999999999998799999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.33 E-value=1.9e-05 Score=44.09 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCCCHHHHH
Q ss_conf 999999875006487899
Q 001797 910 YTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~ 927 (1012)
|..++.++...|+..+|+
T Consensus 104 ~~~l~~al~~~Gr~~eAl 121 (179)
T d2ff4a2 104 WTQLITAYYLSDRQSDAL 121 (179)
T ss_dssp HHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHCCHHHHH
T ss_conf 999999999855799999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.14 E-value=9.1e-06 Score=45.95 Aligned_cols=38 Identities=8% Similarity=-0.123 Sum_probs=20.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 06999999999999998599864569999999983186
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
+.+.+++|+..++.+++.+|.+..++..++.++...++
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~ 46 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ 46 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87369999999999986188310899999999987621
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.96 E-value=7.1e-05 Score=40.72 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHCCCCHHHHHHHHHHHHH-CCCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Q ss_conf 6779999--9999806996689999999998-398889----------88999999999962995789999999998---
Q 001797 837 FRTYTSL--LHGYAGIGKRSEMFALFDEMVE-RGVEPD----------GVIYSMMVDAYLKEGNMMKTIKLVDEMFL--- 900 (1012)
Q Consensus 837 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~-~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 900 (1012)
...|..+ +..+...|++++|+..|+++++ ..-.|+ ...|..++.+|...|++++|...+++.+.
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999859999999999999986844201020012102799999999999982863001576643553043
Q ss_pred -------CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf -------39866889999999987500648789999999954
Q 001797 901 -------RGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 901 -------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
...+....++..++.+|...|++++|++.++++.+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 100245544311278775269999988888888999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=6.7e-05 Score=40.89 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999999996299578999999999839------866889999999987500648789999999954799879887999
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRG------LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
+..++..+.+.|++++|+..++++++.. .+....++..|+.++.+.|++++|++.++++++ +.|+++....
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~ 84 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHH
T ss_conf 9999999999779999999999999988653014764789999872688865773988878877988--6929799999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.00038 Score=36.46 Aligned_cols=294 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99998489997898799999999945994689999999986899988867999999999459966899999999869998
Q 001797 266 KESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIK 345 (1012)
Q Consensus 266 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (1012)
+.++.+.=-.|+..-...+++.|.+.|.++.|..++..+.. |..++..+.+.+++..|.+.+....
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~----- 67 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN----- 67 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-----
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHHHHHHHCCHHHHHHHHHHCC-----
T ss_conf 45699987589857899999999878779999999986789---------9999999970315999999998808-----
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 68998999999999639977999999999986999886669999999981399989999999998599998841199999
Q 001797 346 LNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVII 425 (1012)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 425 (1012)
+..+|..+...+.+.....-+ .+.......+......++..|-..|.+++...+++...... ..+...++.++
T Consensus 68 -~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~ 140 (336)
T d1b89a_ 68 -STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 140 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf -899999999999727287899-----99998753578878999999987698599999999997577-44467999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999814998789999999998899979899----------9999999996199889999999966399998998899999
Q 001797 426 NGLCRCSDLEGACRVFEEMIACGLKPNNFV----------YTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLI 495 (1012)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 495 (1012)
..|++. ...++.+.+...+...+..- |..++-.|.+.|.++.|..+.-.-.. +.......+
T Consensus 141 ~lyak~----~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~-----~~~~~~~f~ 211 (336)
T d1b89a_ 141 ILYSKF----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT-----DAWKEGQFK 211 (336)
T ss_dssp HHHHTT----CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT-----TTCCHHHHH
T ss_pred HHHHHH----CHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCH-----HHHHHHHHH
T ss_conf 999986----94999999986023599999999988748749999999855879999999997654-----456699999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99990799889999999999889997531299999999950998999999999998999989998999999999629967
Q 001797 496 SGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVK 575 (1012)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 575 (1012)
..+.+..+.+...+......+. .+...+.++......-+.....+.++. .+++.
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------------~~~l~ 265 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK----------------------VKQLP 265 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH----------------------TTCTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHH----------------------CCCCH
T ss_conf 9997247869999999999975----999999999985657998999999985----------------------38807
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8999999997299998899899999999824999999999999
Q 001797 576 EAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618 (1012)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 618 (1012)
-....++.....+ +....+++...|...++++.-....+.
T Consensus 266 li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 266 LVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7999999999818---099999999998671246789999987
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00058 Score=35.38 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999980699668999999999839-----8889-889999999999629957899999999983986688999999
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERG-----VEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 913 (1012)
.++..+...|++++|+.+|+++++.. ..++ ..++..++.++.+.|++++|+..++++++.. |.+..++..+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 9999999977999999999999998865301476478999987268886577398887887798869-2979999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.20 E-value=0.0029 Score=31.28 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 578999999999839
Q 001797 888 MMKTIKLVDEMFLRG 902 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~ 902 (1012)
.++|.+++++..+.+
T Consensus 75 ~~~A~~~~~~aa~~g 89 (133)
T d1klxa_ 75 LRKAAQYYSKACGLN 89 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 578888875000257
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.0073 Score=28.97 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 889889999999999629---95789999999998398668-89999999987500648789999999954799879887
Q 001797 869 EPDGVIYSMMVDAYLKEG---NMMKTIKLVDEMFLRGLVLN-QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 869 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+...+...+++++.+.. +.++++.+++.+...+ |.+ ...+..|+.+|.+.|++++|.+.++++++ +.|++..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHH
T ss_conf 9881019999999982796889999999999998549-505999999999999987329999999999982--3998499
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 001797 945 CCILISS 951 (1012)
Q Consensus 945 ~~~l~~~ 951 (1012)
...+...
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.011 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=6.6
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q ss_conf 9999875006487899999
Q 001797 912 SLANSLCKEEEFYKVLKLL 930 (1012)
Q Consensus 912 ~l~~~~~~~g~~~~A~~~~ 930 (1012)
.++....+.|.++.|+...
T Consensus 418 ~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 418 QLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
T ss_conf 9999999879846999999
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