Citrus Sinensis ID: 001803

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010-

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

ccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHccccccccHHHHHHHHHHHHHHcHHHHHccccccHHccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHccccccccccccccccccEEEccccccccccEEEEEEcccccccccccEEEEEEEEEccccccccEEEEcccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEcccccccEEEEEEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccc

cccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccHHccccHHHHHHHcccccccccccccccccccccccEEEEccccccccccEEEEccccccccEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccEccHHHHHHccccccEEEEEEEEcccccccEEEEEEEcccEEEEEEccccEEEEEcccccHHHHHHHHHccccHHHHHHEcccHHHHHHcccccccccHcHcHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccEEEEEEHEcccccEEEEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHHHcccccc

magirlhviSPLVLVAVgkcardpsvfVRKCAANALPKLHELRQEEITSAIEEIVGILlndrspgvvGAAAAAFAsicpnnftligRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCiesshsekdvfdvnvaledngipsrtydseLVNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktndDVKLLLQctspllwshnSAVVLAAAGVhwimspkedVKRIVKPLLFILRSSGASKYVVLCNIQVFAKalphlfvphyedffvsssdsyqskALKLEILSSIVTESSISSVFKEFQdyirdpdrrfAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTsdiesgngeADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSldsikvpeARVMIIWMVGeyssvgvkIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCakggdmwtITRLFSYLLELAECDLNYDVRDRARFFKKLFShnlcsqvpeetnalqenkdlpLVLVECIFRKqenlaasepindrfylpgslsqivlhaapgyeplpkpcsslcddlgqfsnsidRTTAlgeewtgsssngtddpdtsgsldeesgsnydsqqsipglsdnsgtgdsasegdrncdpliqisdagiacsnengashsgfpdlegMMSKRALESwldeqpgssspsaseQIQVRQSSArisignigrqvkaksytlldpangnglKVYYSfsseastispqLVCLETFFENcssetmsevtlvdeeshkaldlADLTLATTassltsqsdlptlvpmeeitslepgqTMKRILEVRFHHHLLPLKLALhcngkklpvklrpdigyfikpvpmdMETFIEMESRLpgmfeyarsctftdhlgevdkdtdessllkdKYLVICESLASKMLSNANIFLVSVdmpvaakfddasglslrfsseilgnsvpCLITITvegkcseplkvsakvnceetVFGLNLLNRIVNFLVESSLNT

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALedngipsrtydselvNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktnddVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSivtessisSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLfrsldsikvpEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALgeewtgsssngtddpdtSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSsarisignigrqVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASsltsqsdlptlvPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLgevdkdtdessllkDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGaaaaafaSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKleilssivtessissvFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLiqsiisiksiikqDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKaldladltlattassltsqsdlPTLVPMEEITSLEPGQTMKRILEVRFhhhllplklalhCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYL************************DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQF*********************************************************************************************************************************SIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLV*******LDLADLTL*****************************TMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV******

***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC****************PLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPK****************************************************************************************************************************************************QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTL******************************************PGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVES****

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGE*************************************************DRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALES**********************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

*AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE*LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDI*SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPC***************************************************************************************************************************************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHK***LAD*TLA*T*SSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVES****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1011	2.2.26 [Sep-21-2011]
Q9M2T1		987	AP3-complex subunit beta-	yes	no	0.966	0.989	0.585	0.0
Q13367		1082	AP-3 complex subunit beta	yes	no	0.496	0.463	0.333	3e-78
Q32PG1		1084	AP-3 complex subunit beta	no	no	0.518	0.483	0.325	3e-77
Q9JME5		1082	AP-3 complex subunit beta	yes	no	0.494	0.462	0.335	4e-77
Q7YRF1		1091	AP-3 complex subunit beta	no	no	0.486	0.450	0.331	9e-76
O00203		1094	AP-3 complex subunit beta	no	no	0.488	0.451	0.333	1e-74
Q556J8		1108	AP-3 complex subunit beta	yes	no	0.508	0.463	0.291	1e-64
Q9Z1T1		1105	AP-3 complex subunit beta	no	no	0.327	0.299	0.352	3e-54
Q759E2		781	AP-3 complex subunit beta	yes	no	0.437	0.565	0.272	3e-28
P52303		949	AP-1 complex subunit beta	no	no	0.424	0.452	0.259	2e-27

>sp\|Q9M2T1\|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2	Back alignment and function desciption

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1014 (58%), Positives = 751/1014 (74%), Gaps = 37/1014 (3%)

Query: 1    MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
            MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 1    MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60

Query: 61   DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
            D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 61   DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120

Query: 121  LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
            LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 121  LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180

Query: 179  LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
            L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 181  LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240

Query: 239  EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
            EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241  EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300

Query: 299  LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
            LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 301  LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360

Query: 359  IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
            +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 361  VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420

Query: 419  IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
            IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 421  IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480

Query: 479  TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
             R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 481  KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538

Query: 538  FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
            F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 539  FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597

Query: 598  LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
               +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 598  AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648

Query: 655  PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
            PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 649  PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696

Query: 715  ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
            A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 697  AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756

Query: 775  SEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRF 834
             EV L DEES K  D ++ TL   A++  S +++PTL+PMEEI+ LEP Q+ KR+++VRF
Sbjct: 757  LEVNLEDEESMKVADSSEQTLVGKANA--SYNNIPTLIPMEEISCLEPHQSTKRLIQVRF 814

Query: 835  HHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFT 894
            HHHLLP++L LH N KK+PVKLRPD+GY +KP  M +E F+  ESRLPGMFEY+R CTF 
Sbjct: 815  HHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSRRCTFD 874

Query: 895  DHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRF 954
            DH+   D  T+     KDK+L ICES+  K+LSN+N+ LVSVD+PVA   +DA+GL LRF
Sbjct: 875  DHVK--DSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVANSLEDATGLRLRF 929

Query: 955  SSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESS 1008
            SS+IL + +P LITITVEGKC+E L ++ K+NCEETVFGLNLLNRI NF+VE S
Sbjct: 930  SSKILSSEIPLLITITVEGKCTEVLNLTVKINCEETVFGLNLLNRIANFMVEPS 983

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q13367\|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2	Back alignment and function description

>sp\|Q32PG1\|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1	Back alignment and function description

>sp\|Q9JME5\|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2	Back alignment and function description

>sp\|Q7YRF1\|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1	Back alignment and function description

>sp\|O00203\|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3	Back alignment and function description

>sp\|Q556J8\|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1	Back alignment and function description

>sp\|Q9Z1T1\|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2	Back alignment and function description

>sp\|Q759E2\|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2	Back alignment and function description

>sp\|P52303\|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1011
359486795		1140	PREDICTED: AP3-complex subunit beta-A-li	0.996	0.883	0.699	0.0
255584875		1121	conserved hypothetical protein [Ricinus	0.976	0.880	0.678	0.0
356501063		1129	PREDICTED: AP3-complex subunit beta-A-li	0.983	0.880	0.653	0.0
224109508		991	predicted protein [Populus trichocarpa]	0.976	0.995	0.668	0.0
357492243		1126	AP-3 complex subunit beta-2 [Medicago tr	0.977	0.877	0.649	0.0
356551707		1129	PREDICTED: AP3-complex subunit beta-A-li	0.983	0.880	0.653	0.0
449459904		1127	PREDICTED: AP3-complex subunit beta-A-li	0.972	0.872	0.607	0.0
18410287		987	AP3-complex subunit beta-A [Arabidopsis	0.966	0.989	0.585	0.0
240255649		1115	AP3-complex subunit beta-A [Arabidopsis	0.966	0.876	0.585	0.0
16604671		987	putative AP3-complex beta-3A adaptin sub	0.966	0.989	0.583	0.0

>gi\|359486795\|ref\|XP_002278568.2\| PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera] gi\|296086225\|emb\|CBI31666.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1350 bits (3495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1011 (69%), Positives = 814/1011 (80%), Gaps = 4/1011 (0%)

Query: 1    MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
            MAGIRL VI+P+VLVAV KCARDPSV+VRKCAANALPKLH+LR EE T A+EEIVGILLN
Sbjct: 129  MAGIRLLVIAPIVLVAVEKCARDPSVYVRKCAANALPKLHDLRIEENTPALEEIVGILLN 188

Query: 61   DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
            D SPGVVGAAAAAF S+CPNN +LIGRNYR LC++LPDVEEWGQILLIEILLR+V+A HG
Sbjct: 189  DHSPGVVGAAAAAFTSVCPNNLSLIGRNYRRLCEVLPDVEEWGQILLIEILLRFVIAKHG 248

Query: 121  LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
            LV+ESIM    C ESS SEKD  D+N A E DNG   R + SELVN+VSR YIEG  EYL
Sbjct: 249  LVQESIMFQSCCTESSQSEKDGSDINSAFEEDNGDTGRGFMSELVNMVSRCYIEGPDEYL 308

Query: 180  TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
            +R S  N  SS L+ + F SG+ NDDVK+LLQCTSPLLWSHNSAVVLAAAGVHWIM+P+E
Sbjct: 309  SRLSYINEVSSGLDRSCFMSGRGNDDVKMLLQCTSPLLWSHNSAVVLAAAGVHWIMAPRE 368

Query: 240  DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
            DVKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF PH+EDFF+SSSDSYQ KALKL
Sbjct: 369  DVKRIVKPLLFLLRSSHVSKYVVLCNIQVFAKAMPFLFAPHFEDFFISSSDSYQIKALKL 428

Query: 300  EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
            EILSSI  +SSISS+F+EFQDYIRDPDRRFAADTV AIGLCA++LPK+AN C+EGLLAL 
Sbjct: 429  EILSSIAMDSSISSIFQEFQDYIRDPDRRFAADTVTAIGLCAQRLPKVANICLEGLLALT 488

Query: 360  RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
            R+E L  D    + E ++LIQ+I+SI++I+KQDP  HEKVI+QL RSLDSIKVP AR +I
Sbjct: 489  REEYLIGDFVCMDEETNILIQAIMSIEAILKQDPPAHEKVIVQLVRSLDSIKVPAARAII 548

Query: 420  IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479
            IW++GEY+++G  IPRMLTTVL YLA CF SEA ETKLQILNT +KVLLCAKG D+WT  
Sbjct: 549  IWIIGEYNTIGEIIPRMLTTVLTYLARCFASEAQETKLQILNTAVKVLLCAKGKDLWTFK 608

Query: 480  RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
             + SY+LELA+CDL+YDVRDRA   K+L S  L   + EET+ L + KD+P +L ECIFR
Sbjct: 609  SVLSYVLELAKCDLSYDVRDRAHILKELMSCYLGQDLEEETDCLPQ-KDIPQILAECIFR 667

Query: 540  KQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALG 599
             Q    + EPIN RFYLPGSLSQIVLHAAPGYEPLPKPCS LC+DL Q  N +      G
Sbjct: 668  GQRKPMSPEPINFRFYLPGSLSQIVLHAAPGYEPLPKPCSLLCNDLHQRLNVVQGIEGSG 727

Query: 600  EEWTGSSSNGTDDPDT-SGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQ 658
            E  T S S  TDDPD  S S +EES S Y SQ SI   S +   G S SE D N DPLIQ
Sbjct: 728  EGATNSDSYETDDPDMLSQSANEESTSGYSSQNSISRSSGSDEPG-SESEDDDNVDPLIQ 786

Query: 659  ISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARIS 718
             SD GI+   + G S SG   +E +MSK+ LESWLDEQPG S P+ S+Q QVR+SSARIS
Sbjct: 787  FSDVGISNKKQTGVSQSGSDSMEELMSKQTLESWLDEQPGLSDPNLSKQSQVRRSSARIS 846

Query: 719  IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 778
            IG+IG +VK K Y LLDP NGNGL+V YSFSSE S++SPQLVC+E  FENCS+E+MS+V 
Sbjct: 847  IGDIGGRVKPKIYGLLDPTNGNGLRVNYSFSSEVSSMSPQLVCVELIFENCSAESMSKVL 906

Query: 779  LVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 838
            LVDEES+K LD  D +L  T SS+ SQ+D+P LV MEEI S+EPGQ+ K IL+V FHHHL
Sbjct: 907  LVDEESNKGLDSEDQSLVATESSMPSQNDVPNLVYMEEIASIEPGQSTKCILQVCFHHHL 966

Query: 839  LPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLG 898
            LP+KLAL CNGKK PVKLRPDIGYFIKP+PMD+E F+  ES LPGMFEY R CTFTDH+ 
Sbjct: 967  LPVKLALWCNGKKYPVKLRPDIGYFIKPLPMDVEVFVNKESHLPGMFEYERRCTFTDHIR 1026

Query: 899  EVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEI 958
            E++ D  +SSL KDK+LVIC+SLA KMLSNAN+FLVSVDMPVA+  DDASGL LRFSSEI
Sbjct: 1027 EMNSDKGDSSLTKDKFLVICKSLAVKMLSNANLFLVSVDMPVASNLDDASGLRLRFSSEI 1086

Query: 959  LGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSL 1009
            L NS+PCLITIT+EG CSEPL V+ KVNCEETVFGLNLLNRIVNFLVE S+
Sbjct: 1087 LSNSIPCLITITIEGNCSEPLNVTIKVNCEETVFGLNLLNRIVNFLVEPSI 1137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255584875\|ref\|XP_002533153.1\| conserved hypothetical protein [Ricinus communis] gi\|223527048\|gb\|EEF29234.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356501063\|ref\|XP_003519348.1\| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]	Back alignment and taxonomy information

>gi\|224109508\|ref\|XP_002315219.1\| predicted protein [Populus trichocarpa] gi\|222864259\|gb\|EEF01390.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357492243\|ref\|XP_003616410.1\| AP-3 complex subunit beta-2 [Medicago truncatula] gi\|355517745\|gb\|AES99368.1\| AP-3 complex subunit beta-2 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356551707\|ref\|XP_003544215.1\| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]	Back alignment and taxonomy information

>gi\|449459904\|ref\|XP_004147686.1\| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus] gi\|449503249\|ref\|XP_004161908.1\| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18410287|ref|NP_567022.1| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|306531058|sp|Q9M2T1.2|AP3BA_ARATH RecName: Full=AP3-complex subunit beta-A; AltName: Full=Adapter-related protein complex 3 subunit beta-A; AltName: Full=Adaptor protein complex AP-3 subunit beta-A; AltName: Full=Beta-3B-adaptin; AltName: Full=Clathrin assembly protein complex 3 beta-A large chain gi|332645869|gb|AEE79390.1| AP3-complex subunit beta-A [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|240255649\|ref\|NP_974443.4\| AP3-complex subunit beta-A [Arabidopsis thaliana] gi\|332645870\|gb\|AEE79391.1\| AP3-complex subunit beta-A [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|16604671\|gb\|AAL24128.1\| putative AP3-complex beta-3A adaptin subunit [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1011
TAIR\|locus:2099961		1115	PAT2 "protein affected traf	0.755	0.685	0.527	1.8e-190
FB\|FBgn0003210		1178	rb "ruby" [Drosophila melanoga	0.429	0.368	0.329	6.5e-61
MGI\|MGI:1333879		1105	Ap3b1 "adaptor-related protein	0.551	0.504	0.275	6.3e-58
RGD\|1308950		1082	Ap3b2 "adaptor-related protein	0.247	0.231	0.325	1.1e-55
DICTYBASE\|DDB_G0274003		1108	ap3b-2 "beta adaptin" [Dictyos	0.164	0.149	0.347	1.4e-55
DICTYBASE\|DDB_G0272578		1108	ap3b-1 "beta adaptin" [Dictyos	0.164	0.149	0.347	1.4e-55
MGI\|MGI:1100869		1082	Ap3b2 "adaptor-related protein	0.247	0.231	0.325	1.8e-55
UNIPROTKB\|F1RI97		1082	F1RI97 "Uncharacterized protei	0.247	0.231	0.329	2.3e-54
UNIPROTKB\|F1P7W8		1084	AP3B2 "Uncharacterized protein	0.247	0.230	0.325	3.2e-54
UNIPROTKB\|J9P1J6		1102	AP3B2 "Uncharacterized protein	0.247	0.226	0.325	7.3e-54

TAIR\|locus:2099961 PAT2 "protein affected trafﬁcking 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1846 (654.9 bits), Expect = 1.8e-190, P = 1.8e-190
 Identities = 419/794 (52%), Positives = 517/794 (65%)

Query:     1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
             MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct:   129 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 188

Query:    61 DRSPGVVGXXXXXXXSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
             D SPGVVG       SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct:   189 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 248

Query:   121 LVKESIMSSLLCIESS-HSEKDVF--DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
             LV+ES+M S+    S+   EKD    D+ +  ED G  S ++D  LV+LVS+ YI+G  E
Sbjct:   249 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGG-KSDSFDVNLVSLVSKCYIQGPDE 307

Query:   178 YLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237
             YL+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P
Sbjct:   308 YLSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAP 367

Query:   238 KEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297
              EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA 
Sbjct:   368 LEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAY 427

Query:   298 KXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357
             K                 +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLA
Sbjct:   428 KLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLA 487

Query:   358 LIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARV 417
             L+RQE    D ES +GEA VL             DP  HEKV+IQLFRSLDSIKV  AR 
Sbjct:   488 LVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARA 547

Query:   418 MIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWT 477
              IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   
Sbjct:   548 TIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHM 607

Query:   478 ITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVEC 536
             + R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE 
Sbjct:   608 LKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEH 665

Query:   537 IFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTT 596
             +F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+  
Sbjct:   666 VFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDK-- 722

Query:   597 ALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS-EGDRN--C 653
                +    +  +G+++   +G  DE   S+YDS+ S  G SD S  GD  +   D N   
Sbjct:   723 ---QREAAADLDGSEESSETG--DENGSSDYDSESS-NG-SDFSSEGDERTVSNDANDPA 775

Query:   654 DPLIQISDAGIACSNENGASHSGFPDL---EGMMSKRALESWLDEQPGSSSPSASEQIQV 710
              PLIQIS+  ++   E   S     DL   +   +     S L+    S +  +   +  
Sbjct:   776 APLIQISETSVSADQEELRSRRAL-DLWLDDQPSTSNQTPSALNSNQSSYAKISIGDVGS 834

Query:   711 R---QSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQL-VCLETFF 766
             R   +S + +  GN G  +K     L + +N + L V      E S+  P L V LE   
Sbjct:   835 RVKPKSYSLVDPGN-GSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPILEVNLEDE- 892

Query:   767 ENCSSETMSEVTLV 780
             E+      SE TLV
Sbjct:   893 ESMKVADSSEQTLV 906

GO:0005634 "nucleus" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0080171 "lytic vacuole organization" evidence=IMP

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0051453 "regulation of intracellular pH" evidence=IMP

FB\|FBgn0003210 rb "ruby" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:1333879 Ap3b1 "adaptor-related protein complex 3, beta 1 subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308950 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274003 ap3b-2 "beta adaptin" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0272578 ap3b-1 "beta adaptin" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1100869 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RI97 F1RI97 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P7W8 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P1J6 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2T1	AP3BA_ARATH	No assigned EC number	0.5857	0.9663	0.9898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1011
pfam01602		522	pfam01602, Adaptin_N, Adaptin N terminal region	1e-41
PTZ00429		746	PTZ00429, PTZ00429, beta-adaptin; Provisional	3e-16
pfam01602		522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-14
COG5096		757	COG5096, COG5096, Vesicle coat complex, various su	2e-11
COG5096		757	COG5096, COG5096, Vesicle coat complex, various su	5e-06
PTZ00429		746	PTZ00429, PTZ00429, beta-adaptin; Provisional	5e-05

>gnl\|CDD\|216598 pfam01602, Adaptin_N, Adaptin N terminal region	Back alignment and domain information

 Score =  160 bits (407), Expect = 1e-41
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 21/309 (6%)

Query: 207 KLLLQCTSPLLWSHNSAVVLAAAGV-HWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLC 264
           K LL+    LL + N+AV+  A      +    E +   V  L   +       +YV L 
Sbjct: 228 KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALR 287

Query: 265 NIQVFAKALPH-LFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR 323
           N+    +  P  +       F + + D    +   L++L  +V ES++  + KE   Y+ 
Sbjct: 288 NLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVS 347

Query: 324 D-PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI 382
           +  D  F    V AIG  A K P  A  C++ LL     ELL+        E       +
Sbjct: 348 EIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLL-----ELLSLAGSYVVDEI------V 396

Query: 383 ISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
             I+ II++ P   E ++  L   L+ I+ PEAR   +W++GEY  +   IP   + +L+
Sbjct: 397 EVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGEL---IPNSPSDLLR 453

Query: 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRA 501
            +   F  E+++ +L +L   +K  L     D      +   +L LA +   + ++RDRA
Sbjct: 454 SILEVFVLESLKVRLALLTALVK--LSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRA 511

Query: 502 RFFKKLFSH 510
             + +L S 
Sbjct: 512 VEYLRLLSL 520

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl\|CDD\|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional	Back alignment and domain information

>gnl\|CDD\|216598 pfam01602, Adaptin_N, Adaptin N terminal region	Back alignment and domain information

>gnl\|CDD\|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1011
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	100.0
PTZ00429		746	beta-adaptin; Provisional	100.0
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	100.0
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	100.0
COG5096		757	Vesicle coat complex, various subunits [Intracellu	100.0
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	100.0
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	100.0
PF14796		145	AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit	100.0
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	99.95
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	99.91
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	99.79
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.75
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	99.52
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.86
PTZ00429		746	beta-adaptin; Provisional	98.21
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.17
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.12
PRK09687		280	putative lyase; Provisional	97.93
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.69
PRK09687		280	putative lyase; Provisional	97.68
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.29
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	97.24
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.19
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.99
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	96.87
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.82
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.78
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.77
COG5096		757	Vesicle coat complex, various subunits [Intracellu	96.73
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.71
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.62
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.52
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.51
KOG0413		1529	consensus Uncharacterized conserved protein relate	96.46
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.44
PF14764		459	SPG48: AP-5 complex subunit, vesicle trafficking	96.19
KOG2259		823	consensus Uncharacterized conserved protein [Funct	96.08
KOG1824		1233	consensus TATA-binding protein-interacting protein	95.78
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.72
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.62
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	95.58
PF05804		708	KAP: Kinesin-associated protein (KAP)	95.48
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.41
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.3
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	95.24
PF05804		708	KAP: Kinesin-associated protein (KAP)	94.94
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.56
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.49
TIGR02270		410	conserved hypothetical protein. Members are found	94.34
smart00809		104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	94.32
PF14807		104	AP4E_app_platf: Adaptin AP4 complex epsilon append	94.19
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.94
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	93.89
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	93.88
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.81
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	93.52
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	93.19
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.02
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	92.92
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	92.83
KOG0212		675	consensus Uncharacterized conserved protein [Funct	92.53
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	92.02
KOG1824		1233	consensus TATA-binding protein-interacting protein	91.85
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.8
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	91.73
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	91.51
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.17
TIGR02270		410	conserved hypothetical protein. Members are found	89.69
PF14797		130	SEEEED: Serine-rich region of AP3B1, clathrin-adap	89.38
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	89.13
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	88.1
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	87.03
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	86.34
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	86.29
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	86.23
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	86.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.04
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	85.77
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	85.3
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	84.74
PF02883		115	Alpha_adaptinC2: Adaptin C-terminal domain; InterP	84.03
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.03
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	82.8
COG5098		1128	Chromosome condensation complex Condensin, subunit	82.3
COG1413		335	FOG: HEAT repeat [Energy production and conversion	81.85
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	81.69
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	80.05

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.2e-179  Score=1536.80  Aligned_cols=820  Identities=36%  Similarity=0.551  Sum_probs=670.7

Q ss_pred             CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001803            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (1011)
Q Consensus         1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~   80 (1011)
                      |||||||+|+||||+|||+|++|++|||||+|||||+|||+++| +++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus       132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence            79999999999999999999999999999999999999999999 88889999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 001803           81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD  160 (1011)
Q Consensus        81 r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~  160 (1011)
                      |++||||||||||++|+|+|||||+++|+||+||||  ++|++|+.|-...                  ++.+     .+
T Consensus       211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~~------------------e~n~-----~~  265 (968)
T KOG1060|consen  211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSSL------------------EDNG-----RS  265 (968)
T ss_pred             HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCcccccccc------------------ccCc-----cc
Confidence            999999999999999999999999999999999985  6799986432211                  1110     00


Q ss_pred             hhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 001803          161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED  240 (1011)
Q Consensus       161 ~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~  240 (1011)
                      ..           ..+.+              + ....++.+|+||++||++++|||||+|++||||||++|||+||+.+
T Consensus       266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~  319 (968)
T KOG1060|consen  266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ  319 (968)
T ss_pred             cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence            00           00000              0 0113467999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 001803          241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD  320 (1011)
Q Consensus       241 l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~  320 (1011)
                      ...+++||+|||++++++||++|++|+.|+.++|.+|.||++.||++.+||++||.+||+||++|+|++|+..|++||++
T Consensus       320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~  399 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT  399 (968)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHH
Q 001803          321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI  400 (1011)
Q Consensus       321 Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii  400 (1011)
                      |+++.|.+|++.||+|||+||.++-.++++||+||+.||++           .++.||.|+|++||.|||++|..|.+++
T Consensus       400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence            99999999999999999999999999999999999999984           4678999999999999999999999999


Q ss_pred             HHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 001803          401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR  480 (1011)
Q Consensus       401 ~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~  480 (1011)
                      .+|++.++.|..|.|||+|+|||||||.   .+|.++|||||+++|+|.+|.++||+|||+++||||+.++.    .+++
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl  541 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL  541 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence            9999999999999999999999999994   68999999999999999999999999999999999999976    5889


Q ss_pred             HHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCC-CCCCCccCcCCCc
Q 001803          481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS  559 (1011)
Q Consensus       481 L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS  559 (1011)
                      ++||||+|++||.+||+|||||||++|+.+.               ..+ .++++.+|.+.+|++. ++.+++|+|++||
T Consensus       542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~---------------~~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs  605 (968)
T KOG1060|consen  542 LVQYVFELARYDLSYDIRDRARFLRQLISPL---------------EAL-SKHAREIFLASKPAPVLESSFKDRHYQLGS  605 (968)
T ss_pred             HHHHHHHHhccCCCcchhHHHHHHHHHhccH---------------HHH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence            9999999999999999999999999999873               122 5788888877766665 8899999999999


Q ss_pred             HHHHhhccCCCCccCCCCCCCcCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001803          560 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN  639 (1011)
Q Consensus       560 LS~~~~~~~~gY~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~s~~~~~~~~s~~~~~~~~~~~s~~  639 (1011)
                      +||+++++++||+|||+|+...++..+      .+   .+++.|++++|++++.+++++++++++++++++.+++     
T Consensus       606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e-----  671 (968)
T KOG1060|consen  606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSRE-----  671 (968)
T ss_pred             HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCccccc-----
Confidence            999999999999999999999887200      11   2356688888876543332323333332222211111     


Q ss_pred             CCCCCCCCCCCCCCCC-cccccccccccCCCCCCCCCCCCC----cccccchhccccccCCCCCCCC--C-----Cchhh
Q 001803          640 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGFPD----LEGMMSKRALESWLDEQPGSSS--P-----SASEQ  707 (1011)
Q Consensus       640 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ld~~~~~~~--~-----~~~~~  707 (1011)
                      ++++..++++.++++. .-+.+.++.+.++.+++++..++.    +.+..+.++....+++..+.+.  .     .+.++
T Consensus       672 ~ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~  751 (968)
T KOG1060|consen  672 GGEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA  751 (968)
T ss_pred             ccccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence            1111111111111000 000000000000000000000000    0010111122235555543322  1     12222


Q ss_pred             hh---hhccccceeeccccc-cccCcceecccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 001803          708 IQ---VRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE  783 (1011)
Q Consensus       708 ~~---~~~s~~~~~~~~~~~-~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~  783 (1011)
                      ..   +.....+.+.....+ .++.|++||||++.|+||.++|+|+|+|    +  |+++++|+|.++.++.+||+    
T Consensus       752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l----  821 (968)
T KOG1060|consen  752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL----  821 (968)
T ss_pred             ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence            21   222222222222222 4778999999999999999999999999    2  99999999999999999999    


Q ss_pred             cchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEEecCcccc
Q 001803          784 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF  863 (1011)
Q Consensus       784 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~~~~~~~~~~l~~~~~~~~v~i~p~vgel  863 (1011)
                        ++|+||+                  |++|.+|++|+||+++++.|||||||+||.+.|+||+.+|  .|+++|||||+
T Consensus       822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~  879 (968)
T KOG1060|consen  822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL  879 (968)
T ss_pred             --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence              3799994                  9999999999999999999999999999999999999999  99999999999


Q ss_pred             cccccCCHHHHHHHhhcCCCCccccceeecccCcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001803          864 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK  943 (1011)
Q Consensus       864 ~~p~~ms~~~f~~~~~~L~GM~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~  943 (1011)
                      ++|+.|++++|+||||+|+|||||  .|.+..                             ++..||++.||++      
T Consensus       880 ~~~v~~~~~~~~~E~~~L~gln~~--~~~l~~-----------------------------~~~~an~~~~~~g------  922 (968)
T KOG1060|consen  880 VQPVRMSEEDFKKERGKLGGLNEH--VIQLEN-----------------------------PNPSANVLFVPSG------  922 (968)
T ss_pred             hccccCCHHHHHhhhhhhcccchh--heeeec-----------------------------ccchhhhhcccCC------
Confidence            999999999999999999999999  444431                             0558999999974      


Q ss_pred             cCCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHHh
Q 001803          944 FDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1004 (1011)
Q Consensus       944 ~~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1004 (1011)
                            ..+||||||+|+++|||+||++  +       ||+|||||||||+||||+|.++|
T Consensus       923 ------~~~rFa~~tlss~~~~llT~~~--k-------~l~ince~~ViG~~ll~~~~~~~  968 (968)
T KOG1060|consen  923 ------SSHRFAGQTLSSKSLVLLTVDE--K-------TLEINCEKTVIGSMLLNEVSNAL  968 (968)
T ss_pred             ------cceeeeeeeccCCceEEEEeeh--h-------eeEecchhhhHHHHHHHHHHhhC
Confidence                  3599999999999999999998  3       78999999999999999999975

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain	Back alignment and domain information

>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1011
1w63_B		584	Ap1 Clathrin Adaptor Core Length = 584		5e-19
2xa7_B		592	Ap2 Clathrin Adaptor Core In Active Complex With Ca		1e-18
2vgl_B		591	Ap2 Clathrin Adaptor Core Length = 591		1e-18

>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584

Back alignment and structure

Iteration: 1

Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 27/308 (8%) Query: 213 TSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLLFILRSSGASKYVVL 263 +P L NSAVVL+A V ++S D +K++ PL+ +L + +YV L Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTLLSAEPEPQYVPL 303 Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323 NI + + P + + FFV +D K K E ++Y Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363 Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383 + D F V AIG CA K+ + A CV LL LI+ ++ E+ D+ Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKY-- 421 Query: 384 XXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443 P+ +E VI L +LDS PEAR +IW+VGEY+ +L + L Sbjct: 422 ---------PNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSDNADELLESFLD- 471 Query: 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503 F E+ + +LQ+L +K+ L + ++ S L + D N D+RDR Sbjct: 472 ---GFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLS--LATQDSD-NPDLRDRGYI 525 Query: 504 FKKLFSHN 511 + +L S + Sbjct: 526 YWRLLSTD 533

PyMOL of 1w63

>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592

Back alignment and structure

>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1011
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	4e-60
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	1e-31
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	3e-26
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	6e-10
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-04

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591	Back alignment and structure

 Score =  215 bits (550), Expect = 4e-60
 Identities = 119/499 (23%), Positives = 214/499 (42%), Gaps = 72/499 (14%)

Query: 23  DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82
           DP+  +R   A A+  +  +R ++IT  + E +   L D  P V   AA   A +   N 
Sbjct: 97  DPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152

Query: 83  TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142
                           + E      ++ L   +  S+ +V  + +++L  I  SH   ++
Sbjct: 153 --------------AQMVEDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196

Query: 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKT 202
            D+N    +  + +    +E   +        + + L+  +  + R              
Sbjct: 197 LDLNPQNINKLLTALNECTEWGQIF-------ILDCLSNYNPKDDR-------------- 235

Query: 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILR 253
             + + + +  +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L 
Sbjct: 236 --EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293

Query: 254 SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313
                +YV L NI +  +  P +     + FFV  +D    K  KL+I+  + ++++I+ 
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353

Query: 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373
           V  E ++Y  + D  F    V AIG CA K+ + A  CV  LL LI+             
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ-----------TK 402

Query: 374 EADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI 433
              V+ ++I+ I+ I ++ P+ +E +I  L  +LDS+  P+AR  +IW+VGEY+      
Sbjct: 403 VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA 462

Query: 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD- 492
                 +L+     F  E+ + +L +L   +K+ L            L   +L LA  D 
Sbjct: 463 DE----LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQDS 514

Query: 493 LNYDVRDRARFFKKLFSHN 511
            N D+RDR   + +L S +
Sbjct: 515 DNPDLRDRGYIYWRLLSTD 533

PyMOL of 2vgl

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1011
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-44
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-43
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1011
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	100.0
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.27
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.06
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.03
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.98
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.97
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.37
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.33
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.26
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.22
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.15
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.06
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.79
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.06
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.97
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.79
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.39
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.17
d1e42a1		120	Beta2-adaptin AP2 ear domain, N-terminal subdomain	96.07
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.04
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	92.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.46
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.67
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	81.56

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure