Citrus Sinensis ID: 001839

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

cccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHccccccHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEccccccccEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEcccccccEEEEEEEEEccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccc

cccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHcHHHHHHHEEEEEcccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHcccccccccccccccccccccccEEEEccccccccccEEEEccccccccEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccEccHHHHHHccccccEEEEEEEEcccccccEEEEEEEcccEEEEEEccccEEEEccccccHHHHHHHHHccccHHHHHHHccccHHHHHcccccccccHcHcHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHHHcccccc

magirlhviSPLVLVAVgkcardpsvfVRKCAANALPKLHELRQEEITSAIEEIVGILlndrspgvvGAAAAAFAsicpnnftligRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCiesshsekdvfdvnvaledngipsrtydseLVNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktndDVKLLLQctspllwshnSAVVLAAAGVhwimspkedVKRIVKPLLFILRSSGASKYVVLCNIQVFAKalphlfvphyedffvsssdsyqskALKLEILSSIVTESSISSVFKEFQdyirdpdrrfAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTsdiesgngeADVLIQSIISIKSiikqdpscheKLFRsldsikvpEARVMIIWMVGeyssvgvkIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCakggdmwtITRLFSYLLELAECDLNYDVRDRARFFKKLFShnlcsqvpeetnalqenkdlpLVLVECIFRKqenlaasepindrfylpgslsqivlhaapgyeplpkpcsslcddlgqfsnsidRTTAlgeewtgsssngtddpdtsgsldeesgsnydsqqsipglsdnsgtgdsasegdrncdpliqisdagiacsnengashsgfpdlegMMSKRALESwldeqpgssspsaseQIQVRQSSArisignigrqvkaksytlldpangnglKVYYSfsseastispqLVCLETFFENcssetmsevtlvdeeshkaldlADLTLATTassltsqsdlptlvpmeeitslepgqTMKRILEVRFHHHLLPLKLALhcngkklpvklrpdigyfikpvpmdMETFIEMESRLpgmfeyarsctftdhlgevdkdtdessllkdKYLVICESLASKMLSNANIFLVSVdmpvaakfddasglslrfsseilgnsvpCLITITvegkcseplkvsakvnceetVFGLNLLNRIVNFLVESSLNT

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALedngipsrtydselvNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktnddVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSivtessisSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFrsldsikvpeARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALgeewtgsssngtddpdtSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSsarisignigrqVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASsltsqsdlptlvPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLgevdkdtdessllkDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGaaaaafaSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKleilssivtessissvFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLiqsiisiksiikqDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKaldladltlattassltsqsdlPTLVPMEEITSLEPGQTMKRILEVRFhhhllplklalhCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYL************************DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQF*********************************************************************************************************************************SIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLV*******LDLADLTL*****************************TMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV******

***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC****************PLVLVECIFRKQENL*****INDRFYLPGSLSQIVLHAAPGYEPLP*****************************************************************************************************************************************************QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSE***********************************************QTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVD******SLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV*S****

MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGE*************************************************DRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALES**********************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSLNT

*AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE**TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCS**************************************************************************************************************************************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHK***LADLTLA***SSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVES****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1007	2.2.26 [Sep-21-2011]
Q9M2T1		987	AP3-complex subunit beta-	yes	no	0.966	0.985	0.582	0.0
Q13367		1082	AP-3 complex subunit beta	yes	no	0.494	0.460	0.331	1e-76
Q9JME5		1082	AP-3 complex subunit beta	yes	no	0.492	0.458	0.333	1e-75
Q32PG1		1084	AP-3 complex subunit beta	no	no	0.516	0.479	0.323	1e-75
Q7YRF1		1091	AP-3 complex subunit beta	no	no	0.484	0.447	0.329	7e-74
O00203		1094	AP-3 complex subunit beta	no	no	0.486	0.447	0.332	8e-73
Q556J8		1108	AP-3 complex subunit beta	yes	no	0.506	0.460	0.291	6e-63
Q9Z1T1		1105	AP-3 complex subunit beta	no	no	0.324	0.295	0.352	6e-53
Q759E2		781	AP-3 complex subunit beta	yes	no	0.434	0.560	0.274	2e-26
O13939		745	AP-3 complex subunit beta	yes	no	0.352	0.476	0.258	4e-26

>sp\|Q9M2T1\|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2	Back alignment and function desciption

 Score = 1123 bits (2904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1014 (58%), Positives = 747/1014 (73%), Gaps = 41/1014 (4%)

Query: 1    MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
            MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 1    MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60

Query: 61   DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
            D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 61   DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120

Query: 121  LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
            LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 121  LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180

Query: 179  LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
            L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 181  LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240

Query: 239  EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
            EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241  EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300

Query: 299  LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
            LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 301  LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360

Query: 359  IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK----LFRSLDSIKVPEARVM 414
            +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEK    LFRSLDSIKV  AR  
Sbjct: 361  VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420

Query: 415  IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 474
            IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 421  IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480

Query: 475  TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 533
             R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 481  KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538

Query: 534  FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 593
            F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 539  FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597

Query: 594  LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 650
               +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 598  AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648

Query: 651  PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 710
            PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 649  PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696

Query: 711  ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 770
            A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 697  AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756

Query: 771  SEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRF 830
             EV L DEES K  D ++ TL   A++  S +++PTL+PMEEI+ LEP Q+ KR+++VRF
Sbjct: 757  LEVNLEDEESMKVADSSEQTLVGKANA--SYNNIPTLIPMEEISCLEPHQSTKRLIQVRF 814

Query: 831  HHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFT 890
            HHHLLP++L LH N KK+PVKLRPD+GY +KP  M +E F+  ESRLPGMFEY+R CTF 
Sbjct: 815  HHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSRRCTFD 874

Query: 891  DHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRF 950
            DH+   D  T+     KDK+L ICES+  K+LSN+N+ LVSVD+PVA   +DA+GL LRF
Sbjct: 875  DHVK--DSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVANSLEDATGLRLRF 929

Query: 951  SSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESS 1004
            SS+IL + +P LITITVEGKC+E L ++ K+NCEETVFGLNLLNRI NF+VE S
Sbjct: 930  SSKILSSEIPLLITITVEGKCTEVLNLTVKINCEETVFGLNLLNRIANFMVEPS 983

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q13367\|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2	Back alignment and function description

>sp\|Q9JME5\|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2	Back alignment and function description

>sp\|Q32PG1\|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1	Back alignment and function description

>sp\|Q7YRF1\|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1	Back alignment and function description

>sp\|O00203\|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3	Back alignment and function description

>sp\|Q556J8\|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1	Back alignment and function description

>sp\|Q9Z1T1\|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2	Back alignment and function description

>sp\|Q759E2\|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2	Back alignment and function description

>sp\|O13939\|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl6 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1007
359486795		1140	PREDICTED: AP3-complex subunit beta-A-li	0.996	0.879	0.696	0.0
255584875		1121	conserved hypothetical protein [Ricinus	0.976	0.876	0.675	0.0
356501063		1129	PREDICTED: AP3-complex subunit beta-A-li	0.983	0.876	0.649	0.0
224109508		991	predicted protein [Populus trichocarpa]	0.976	0.991	0.665	0.0
357492243		1126	AP-3 complex subunit beta-2 [Medicago tr	0.977	0.873	0.645	0.0
356551707		1129	PREDICTED: AP3-complex subunit beta-A-li	0.983	0.876	0.649	0.0
449459904		1127	PREDICTED: AP3-complex subunit beta-A-li	0.972	0.868	0.603	0.0
18410287		987	AP3-complex subunit beta-A [Arabidopsis	0.966	0.985	0.582	0.0
240255649		1115	AP3-complex subunit beta-A [Arabidopsis	0.966	0.872	0.582	0.0
16604671		987	putative AP3-complex beta-3A adaptin sub	0.966	0.985	0.580	0.0

>gi\|359486795\|ref\|XP_002278568.2\| PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera] gi\|296086225\|emb\|CBI31666.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1338 bits (3464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1011 (69%), Positives = 810/1011 (80%), Gaps = 8/1011 (0%)

Query: 1    MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
            MAGIRL VI+P+VLVAV KCARDPSV+VRKCAANALPKLH+LR EE T A+EEIVGILLN
Sbjct: 129  MAGIRLLVIAPIVLVAVEKCARDPSVYVRKCAANALPKLHDLRIEENTPALEEIVGILLN 188

Query: 61   DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
            D SPGVVGAAAAAF S+CPNN +LIGRNYR LC++LPDVEEWGQILLIEILLR+V+A HG
Sbjct: 189  DHSPGVVGAAAAAFTSVCPNNLSLIGRNYRRLCEVLPDVEEWGQILLIEILLRFVIAKHG 248

Query: 121  LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
            LV+ESIM    C ESS SEKD  D+N A E DNG   R + SELVN+VSR YIEG  EYL
Sbjct: 249  LVQESIMFQSCCTESSQSEKDGSDINSAFEEDNGDTGRGFMSELVNMVSRCYIEGPDEYL 308

Query: 180  TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
            +R S  N  SS L+ + F SG+ NDDVK+LLQCTSPLLWSHNSAVVLAAAGVHWIM+P+E
Sbjct: 309  SRLSYINEVSSGLDRSCFMSGRGNDDVKMLLQCTSPLLWSHNSAVVLAAAGVHWIMAPRE 368

Query: 240  DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
            DVKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF PH+EDFF+SSSDSYQ KALKL
Sbjct: 369  DVKRIVKPLLFLLRSSHVSKYVVLCNIQVFAKAMPFLFAPHFEDFFISSSDSYQIKALKL 428

Query: 300  EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
            EILSSI  +SSISS+F+EFQDYIRDPDRRFAADTV AIGLCA++LPK+AN C+EGLLAL 
Sbjct: 429  EILSSIAMDSSISSIFQEFQDYIRDPDRRFAADTVTAIGLCAQRLPKVANICLEGLLALT 488

Query: 360  RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK----LFRSLDSIKVPEARVMI 415
            R+E L  D    + E ++LIQ+I+SI++I+KQDP  HEK    L RSLDSIKVP AR +I
Sbjct: 489  REEYLIGDFVCMDEETNILIQAIMSIEAILKQDPPAHEKVIVQLVRSLDSIKVPAARAII 548

Query: 416  IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 475
            IW++GEY+++G  IPRMLTTVL YLA CF SEA ETKLQILNT +KVLLCAKG D+WT  
Sbjct: 549  IWIIGEYNTIGEIIPRMLTTVLTYLARCFASEAQETKLQILNTAVKVLLCAKGKDLWTFK 608

Query: 476  RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 535
             + SY+LELA+CDL+YDVRDRA   K+L S  L   + EET+ L + KD+P +L ECIFR
Sbjct: 609  SVLSYVLELAKCDLSYDVRDRAHILKELMSCYLGQDLEEETDCLPQ-KDIPQILAECIFR 667

Query: 536  KQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALG 595
             Q    + EPIN RFYLPGSLSQIVLHAAPGYEPLPKPCS LC+DL Q  N +      G
Sbjct: 668  GQRKPMSPEPINFRFYLPGSLSQIVLHAAPGYEPLPKPCSLLCNDLHQRLNVVQGIEGSG 727

Query: 596  EEWTGSSSNGTDDPDT-SGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQ 654
            E  T S S  TDDPD  S S +EES S Y SQ SI   S +   G S SE D N DPLIQ
Sbjct: 728  EGATNSDSYETDDPDMLSQSANEESTSGYSSQNSISRSSGSDEPG-SESEDDDNVDPLIQ 786

Query: 655  ISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARIS 714
             SD GI+   + G S SG   +E +MSK+ LESWLDEQPG S P+ S+Q QVR+SSARIS
Sbjct: 787  FSDVGISNKKQTGVSQSGSDSMEELMSKQTLESWLDEQPGLSDPNLSKQSQVRRSSARIS 846

Query: 715  IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 774
            IG+IG +VK K Y LLDP NGNGL+V YSFSSE S++SPQLVC+E  FENCS+E+MS+V 
Sbjct: 847  IGDIGGRVKPKIYGLLDPTNGNGLRVNYSFSSEVSSMSPQLVCVELIFENCSAESMSKVL 906

Query: 775  LVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 834
            LVDEES+K LD  D +L  T SS+ SQ+D+P LV MEEI S+EPGQ+ K IL+V FHHHL
Sbjct: 907  LVDEESNKGLDSEDQSLVATESSMPSQNDVPNLVYMEEIASIEPGQSTKCILQVCFHHHL 966

Query: 835  LPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLG 894
            LP+KLAL CNGKK PVKLRPDIGYFIKP+PMD+E F+  ES LPGMFEY R CTFTDH+ 
Sbjct: 967  LPVKLALWCNGKKYPVKLRPDIGYFIKPLPMDVEVFVNKESHLPGMFEYERRCTFTDHIR 1026

Query: 895  EVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEI 954
            E++ D  +SSL KDK+LVIC+SLA KMLSNAN+FLVSVDMPVA+  DDASGL LRFSSEI
Sbjct: 1027 EMNSDKGDSSLTKDKFLVICKSLAVKMLSNANLFLVSVDMPVASNLDDASGLRLRFSSEI 1086

Query: 955  LGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESSL 1005
            L NS+PCLITIT+EG CSEPL V+ KVNCEETVFGLNLLNRIVNFLVE S+
Sbjct: 1087 LSNSIPCLITITIEGNCSEPLNVTIKVNCEETVFGLNLLNRIVNFLVEPSI 1137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255584875\|ref\|XP_002533153.1\| conserved hypothetical protein [Ricinus communis] gi\|223527048\|gb\|EEF29234.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356501063\|ref\|XP_003519348.1\| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]	Back alignment and taxonomy information

>gi\|224109508\|ref\|XP_002315219.1\| predicted protein [Populus trichocarpa] gi\|222864259\|gb\|EEF01390.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357492243\|ref\|XP_003616410.1\| AP-3 complex subunit beta-2 [Medicago truncatula] gi\|355517745\|gb\|AES99368.1\| AP-3 complex subunit beta-2 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356551707\|ref\|XP_003544215.1\| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]	Back alignment and taxonomy information

>gi\|449459904\|ref\|XP_004147686.1\| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus] gi\|449503249\|ref\|XP_004161908.1\| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18410287|ref|NP_567022.1| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|306531058|sp|Q9M2T1.2|AP3BA_ARATH RecName: Full=AP3-complex subunit beta-A; AltName: Full=Adapter-related protein complex 3 subunit beta-A; AltName: Full=Adaptor protein complex AP-3 subunit beta-A; AltName: Full=Beta-3B-adaptin; AltName: Full=Clathrin assembly protein complex 3 beta-A large chain gi|332645869|gb|AEE79390.1| AP3-complex subunit beta-A [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|240255649\|ref\|NP_974443.4\| AP3-complex subunit beta-A [Arabidopsis thaliana] gi\|332645870\|gb\|AEE79391.1\| AP3-complex subunit beta-A [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|16604671\|gb\|AAL24128.1\| putative AP3-complex beta-3A adaptin subunit [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1007
TAIR\|locus:2099961		1115	PAT2 "protein affected traf	0.751	0.678	0.558	1.6e-212
FB\|FBgn0003210		1178	rb "ruby" [Drosophila melanoga	0.684	0.584	0.300	2.4e-65
RGD\|1308950		1082	Ap3b2 "adaptor-related protein	0.282	0.262	0.342	3e-61
MGI\|MGI:1100869		1082	Ap3b2 "adaptor-related protein	0.280	0.260	0.344	6.2e-61
UNIPROTKB\|F1P7W8		1084	AP3B2 "Uncharacterized protein	0.535	0.497	0.281	2.7e-60
UNIPROTKB\|E1BW97		1100	AP3B1 "Uncharacterized protein	0.284	0.26	0.336	2.8e-60
UNIPROTKB\|F1RI97		1082	F1RI97 "Uncharacterized protei	0.280	0.260	0.347	8.1e-60
UNIPROTKB\|F1PVY2		1090	AP3B1 "AP-3 complex subunit be	0.543	0.501	0.281	8.2e-60
UNIPROTKB\|B7ZKS0		1101	AP3B2 "AP-3 complex subunit be	0.540	0.494	0.274	1.2e-59
UNIPROTKB\|E5RJ68		1045	AP3B1 "AP-3 complex subunit be	0.574	0.554	0.287	1.7e-59

TAIR\|locus:2099961 PAT2 "protein affected trafﬁcking 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2054 (728.1 bits), Expect = 1.6e-212, P = 1.6e-212
 Identities = 443/793 (55%), Positives = 545/793 (68%)

Query:     1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
             MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct:   129 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 188

Query:    61 DRSPGVVGXXXXXXXSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
             D SPGVVG       SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct:   189 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 248

Query:   121 LVKESIMSSLLCIESS-HSEKDVF--DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
             LV+ES+M S+    S+   EKD    D+ +  ED G  S ++D  LV+LVS+ YI+G  E
Sbjct:   249 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGG-KSDSFDVNLVSLVSKCYIQGPDE 307

Query:   178 YLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237
             YL+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P
Sbjct:   308 YLSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAP 367

Query:   238 KEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297
              EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA 
Sbjct:   368 LEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAY 427

Query:   298 KXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357
             K                 +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLA
Sbjct:   428 KLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLA 487

Query:   358 LIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEK----LFRSLDSIKVPEARV 413
             L+RQE    D ES +GEA VL             DP  HEK    LFRSLDSIKV  AR 
Sbjct:   488 LVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARA 547

Query:   414 MIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWT 473
              IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   
Sbjct:   548 TIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHM 607

Query:   474 ITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVEC 532
             + R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE 
Sbjct:   608 LKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEH 665

Query:   533 IFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTT 592
             +F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+  
Sbjct:   666 VFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDK-- 722

Query:   593 ALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS-EGDRN--C 649
                +    +  +G+++   +G  DE   S+YDS+ S  G SD S  GD  +   D N   
Sbjct:   723 ---QREAAADLDGSEESSETG--DENGSSDYDSESS-NG-SDFSSEGDERTVSNDANDPA 775

Query:   650 DPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQS 709
              PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S
Sbjct:   776 APLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSS 823

Query:   710 SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSET 769
              A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E 
Sbjct:   824 YAKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEP 883

Query:   770 MSEVTLVDEESHK 782
             + EV L DEES K
Sbjct:   884 ILEVNLEDEESMK 896

GO:0005634 "nucleus" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0080171 "lytic vacuole organization" evidence=IMP

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0051453 "regulation of intracellular pH" evidence=IMP

FB\|FBgn0003210 rb "ruby" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|1308950 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1100869 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P7W8 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BW97 AP3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RI97 F1RI97 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PVY2 AP3B1 "AP-3 complex subunit beta-1" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZKS0 AP3B2 "AP-3 complex subunit beta-2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E5RJ68 AP3B1 "AP-3 complex subunit beta-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2T1	AP3BA_ARATH	No assigned EC number	0.5828	0.9662	0.9858	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018474001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1118 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1007
pfam01602		522	pfam01602, Adaptin_N, Adaptin N terminal region	5e-40
PTZ00429		746	PTZ00429, PTZ00429, beta-adaptin; Provisional	6e-16
pfam01602		522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-14
COG5096		757	COG5096, COG5096, Vesicle coat complex, various su	2e-10
COG5096		757	COG5096, COG5096, Vesicle coat complex, various su	5e-06
PTZ00429		746	PTZ00429, PTZ00429, beta-adaptin; Provisional	5e-05

>gnl\|CDD\|216598 pfam01602, Adaptin_N, Adaptin N terminal region	Back alignment and domain information

 Score =  155 bits (394), Expect = 5e-40
 Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 25/309 (8%)

Query: 207 KLLLQCTSPLLWSHNSAVVLAAAGV-HWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLC 264
           K LL+    LL + N+AV+  A      +    E +   V  L   +       +YV L 
Sbjct: 228 KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALR 287

Query: 265 NIQVFAKALPH-LFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR 323
           N+    +  P  +       F + + D    +   L++L  +V ES++  + KE   Y+ 
Sbjct: 288 NLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVS 347

Query: 324 D-PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI 382
           +  D  F    V AIG  A K P  A  C++ LL     ELL+        E       +
Sbjct: 348 EIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLL-----ELLSLAGSYVVDEI------V 396

Query: 383 ISIKSIIKQDPSCHE----KLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 438
             I+ II++ P   E     L   L+ I+ PEAR   +W++GEY  +   IP   + +L+
Sbjct: 397 EVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGEL---IPNSPSDLLR 453

Query: 439 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRA 497
            +   F  E+++ +L +L   +K  L     D      +   +L LA +   + ++RDRA
Sbjct: 454 SILEVFVLESLKVRLALLTALVK--LSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRA 511

Query: 498 RFFKKLFSH 506
             + +L S 
Sbjct: 512 VEYLRLLSL 520

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl\|CDD\|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional	Back alignment and domain information

>gnl\|CDD\|216598 pfam01602, Adaptin_N, Adaptin N terminal region	Back alignment and domain information

>gnl\|CDD\|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1007
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	100.0
PTZ00429		746	beta-adaptin; Provisional	100.0
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	100.0
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	100.0
COG5096		757	Vesicle coat complex, various subunits [Intracellu	100.0
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	100.0
PF14796		145	AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit	100.0
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	100.0
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	99.93
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	99.84
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	99.65
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.64
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	99.48
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.57
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.16
PTZ00429		746	beta-adaptin; Provisional	98.07
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.94
PRK09687		280	putative lyase; Provisional	97.86
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.59
PRK09687		280	putative lyase; Provisional	97.32
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.12
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.86
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.8
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.7
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.48
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.45
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.38
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.18
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.0
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.78
PF14764		459	SPG48: AP-5 complex subunit, vesicle trafficking	95.77
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.59
KOG0413		1529	consensus Uncharacterized conserved protein relate	95.46
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.38
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.28
KOG0212		675	consensus Uncharacterized conserved protein [Funct	95.18
PF05804		708	KAP: Kinesin-associated protein (KAP)	95.11
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	94.73
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.59
KOG2259		823	consensus Uncharacterized conserved protein [Funct	94.52
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	94.51
TIGR02270		410	conserved hypothetical protein. Members are found	94.42
smart00809		104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	94.26
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.1
PF14807		104	AP4E_app_platf: Adaptin AP4 complex epsilon append	94.01
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.69
KOG1824		1233	consensus TATA-binding protein-interacting protein	93.65
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	93.61
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.57
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	93.36
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	93.03
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	92.6
KOG1242		569	consensus Protein containing adaptin N-terminal re	92.59
PF05804		708	KAP: Kinesin-associated protein (KAP)	91.91
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	91.88
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.72
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	91.1
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	90.96
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	90.51
TIGR02270		410	conserved hypothetical protein. Members are found	89.0
PF14797		130	SEEEED: Serine-rich region of AP3B1, clathrin-adap	88.88
KOG1824		1233	consensus TATA-binding protein-interacting protein	88.51
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	88.07
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.08
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	86.85
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	85.84
COG5098		1128	Chromosome condensation complex Condensin, subunit	85.42
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.41
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	85.31
COG1413		335	FOG: HEAT repeat [Energy production and conversion	85.05
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	84.83
KOG1242		569	consensus Protein containing adaptin N-terminal re	84.59
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	84.59
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	84.44
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	84.29
PF02883		115	Alpha_adaptinC2: Adaptin C-terminal domain; InterP	84.09
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.0
KOG0212		675	consensus Uncharacterized conserved protein [Funct	83.67
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	82.59
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	81.04
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	80.57
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	80.34
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	80.06

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.6e-180  Score=1544.00  Aligned_cols=816  Identities=36%  Similarity=0.549  Sum_probs=666.2

Q ss_pred             CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001839            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (1007)
Q Consensus         1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~   80 (1007)
                      |||||||+|+||+|+|||+|++|++|||||+|||||+|||+++| +++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus       132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence            79999999999999999999999999999999999999999999 77889999999999999999999999999999999


Q ss_pred             CccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 001839           81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD  160 (1007)
Q Consensus        81 rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~  160 (1007)
                      |++||||||||||++|+|+|||||+++|+||+||||  ++|++|+.|-...                  ++.+.     +
T Consensus       211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~~------------------e~n~~-----~  265 (968)
T KOG1060|consen  211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSSL------------------EDNGR-----S  265 (968)
T ss_pred             HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCcccccccc------------------ccCcc-----c
Confidence            999999999999999999999999999999999985  6799987542221                  11110     0


Q ss_pred             hhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHH
Q 001839          161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED  240 (1007)
Q Consensus       161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~  240 (1007)
                      ..           .++.+              + ...+++.+|+||++||++++|||||+|++||||||++|||++|+.+
T Consensus       266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~  319 (968)
T KOG1060|consen  266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ  319 (968)
T ss_pred             cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence            00           00000              0 0113467999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 001839          241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD  320 (1007)
Q Consensus       241 l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~  320 (1007)
                      +..+++||+|||++++++||++|++|+.|+.++|.+|.||++.||++++||++||.+||+||++|+|++|+..||+||++
T Consensus       320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~  399 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT  399 (968)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH--
Q 001839          321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK--  398 (1007)
Q Consensus       321 Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~--  398 (1007)
                      |+.+.|.+|++.||+|||+||.++-.++++||+||+.||++           .++.||.|+|++||.|||++|..|.+  
T Consensus       400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence            99999999999999999999999999999999999999994           36779999999999999999999966  


Q ss_pred             --HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 001839          399 --LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR  476 (1007)
Q Consensus       399 --L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~  476 (1007)
                        |++++++|..|.|||+||||+||||.   .+|.++|||||+++|+|.+|.++||+|||+++||||+.++.    ++++
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl  541 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL  541 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence              88899999999999999999999995   58999999999999999999999999999999999999976    5889


Q ss_pred             HHHHHHHHHccCCChhHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhcCCCCCCC-CCCCCcccccCCc
Q 001839          477 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS  555 (1007)
Q Consensus       477 L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS  555 (1007)
                      ++|||++|++||.+||+|||||||++|+.+..               .+ .++++.+|.+.+|++. ++.++.|+|++||
T Consensus       542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs  605 (968)
T KOG1060|consen  542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------AL-SKHAREIFLASKPAPVLESSFKDRHYQLGS  605 (968)
T ss_pred             HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence            99999999999999999999999999998731               12 5788888877766665 8899999999999


Q ss_pred             HHHHhhccCCCCccCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001839          556 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN  635 (1007)
Q Consensus       556 LS~~~~~~~~gY~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~se~~~~~~~s~~~~~~~~s~~~~~~~~~~~s~~  635 (1007)
                      +||+++++++||+|||+|+...++..+      .+   .+++.|++++|++++..+++++++++++++++..++++    
T Consensus       606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~----  672 (968)
T KOG1060|consen  606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREG----  672 (968)
T ss_pred             HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCcccccc----
Confidence            999999999999999999999887200      11   23566888888775443333233333322222111111    


Q ss_pred             CCCCCCCCCCCCCCCC-cccccccccccCCCCCCCCCCCCC----cccccchhcccccccCCCCCCC--C-----Cchhh
Q 001839          636 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGFPD----LEGMMSKRALESWLDEQPGSSS--P-----SASEQ  703 (1007)
Q Consensus       636 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ld~~~~~~~--~-----~~~~~  703 (1007)
                       +++..++++.++++. .-+.+.++.+.++.+++++..++.    +.+..+.++....+++..+.+.  .     .+.++
T Consensus       673 -ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~  751 (968)
T KOG1060|consen  673 -GEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA  751 (968)
T ss_pred             -cccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence             100111111111000 000000000000000000000000    0110111122235555544332  1     12222


Q ss_pred             h---HhhccccceeecccCc-cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 001839          704 I---QVRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE  779 (1007)
Q Consensus       704 ~---~~~~s~~~~~~~~~~~-~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~  779 (1007)
                      .   .+.....+.+.....+ .++.|++||||++.|+||.++|+|+|+|    +  |+++++|+|.++.++.+||+    
T Consensus       752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l----  821 (968)
T KOG1060|consen  752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL----  821 (968)
T ss_pred             ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence            1   1222222322222223 4778999999999999999999999999    2  99999999999999999999    


Q ss_pred             cchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcCCCCccceEEEEEcCCeeeeEEecCcccc
Q 001839          780 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF  859 (1007)
Q Consensus       780 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~~~~~~~l~~~~~~~~v~i~p~vgel  859 (1007)
                        ++|.||+                  |++|.+|++|+||+++++.|||||||+||.+.|+||+.+|  .|+++|||||+
T Consensus       822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~  879 (968)
T KOG1060|consen  822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL  879 (968)
T ss_pred             --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence              3799995                  9999999999999999999999999999999999999999  99999999999


Q ss_pred             cccccCCHHHHHHHhhcCCCCcccccceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001839          860 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK  939 (1007)
Q Consensus       860 ~~p~~ms~~~f~~~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~  939 (1007)
                      ++|+.|++++|+||||+|+|||||  .|.+..                             ++..||++.||++      
T Consensus       880 ~~~v~~~~~~~~~E~~~L~gln~~--~~~l~~-----------------------------~~~~an~~~~~~g------  922 (968)
T KOG1060|consen  880 VQPVRMSEEDFKKERGKLGGLNEH--VIQLEN-----------------------------PNPSANVLFVPSG------  922 (968)
T ss_pred             hccccCCHHHHHhhhhhhcccchh--heeeec-----------------------------ccchhhhhcccCC------
Confidence            999999999999999999999999  444431                             0558999999974      


Q ss_pred             cCCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHhh
Q 001839          940 FDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1000 (1007)
Q Consensus       940 ~~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1000 (1007)
                            ..+||||||+|+++|||+||++  +       ||+|||||||||+||||+|.++|
T Consensus       923 ------~~~rFa~~tlss~~~~llT~~~--k-------~l~ince~~ViG~~ll~~~~~~~  968 (968)
T KOG1060|consen  923 ------SSHRFAGQTLSSKSLVLLTVDE--K-------TLEINCEKTVIGSMLLNEVSNAL  968 (968)
T ss_pred             ------cceeeeeeeccCCceEEEEeeh--h-------eeEecchhhhHHHHHHHHHHhhC
Confidence                  3599999999999999999998  4       78999999999999999999975

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1007
1w63_B		584	Ap1 Clathrin Adaptor Core Length = 584		1e-16
2vgl_B		591	Ap2 Clathrin Adaptor Core Length = 591		1e-16
2xa7_B		592	Ap2 Clathrin Adaptor Core In Active Complex With Ca		1e-16

>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584

Back alignment and structure

Iteration: 1

Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 131/308 (42%), Gaps = 31/308 (10%) Query: 213 TSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLLFILRSSGASKYVVL 263 +P L NSAVVL+A V ++S D +K++ PL+ +L + +YV L Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTLLSAEPEPQYVPL 303 Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323 NI + + P + + FFV +D K K E ++Y Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363 Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383 + D F V AIG CA K+ + A CV LL LI+ ++ E+ D+ Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKY-- 421 Query: 384 XXXXXXXXDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 439 P+ +E L +LDS PEAR +IW+VGEY+ +L + L Sbjct: 422 ---------PNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSDNADELLESFLD- 471 Query: 440 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 499 F E+ + +LQ+L +K+ L + ++ S L + D N D+RDR Sbjct: 472 ---GFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLS--LATQDSD-NPDLRDRGYI 525 Query: 500 FKKLFSHN 507 + +L S + Sbjct: 526 YWRLLSTD 533

PyMOL of 1w63

>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591

Back alignment and structure

>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1007
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	9e-58
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	1e-29
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	4e-24
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	5e-10
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-04

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591	Back alignment and structure

 Score =  208 bits (532), Expect = 9e-58
 Identities = 118/499 (23%), Positives = 212/499 (42%), Gaps = 76/499 (15%)

Query: 23  DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82
           DP+  +R   A A+  +  +R ++IT  + E +   L D  P V   AA   A +   N 
Sbjct: 97  DPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152

Query: 83  TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142
                           + E      ++ L   +  S+ +V  + +++L  I  SH   ++
Sbjct: 153 --------------AQMVEDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196

Query: 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKT 202
            D+N    +  + +    +E   +        + + L+  +  + R              
Sbjct: 197 LDLNPQNINKLLTALNECTEWGQIF-------ILDCLSNYNPKDDR-------------- 235

Query: 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILR 253
             + + + +  +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L 
Sbjct: 236 --EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293

Query: 254 SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313
                +YV L NI +  +  P +     + FFV  +D    K  KL+I+  + ++++I+ 
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353

Query: 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373
           V  E ++Y  + D  F    V AIG CA K+ + A  CV  LL LI+             
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ-----------TK 402

Query: 374 EADVLIQSIISIKSIIKQDPSCHE----KLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI 429
              V+ ++I+ I+ I ++ P+ +E     L  +LDS+  P+AR  +IW+VGEY+      
Sbjct: 403 VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA 462

Query: 430 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD- 488
                 +L+     F  E+ + +L +L   +K+ L            L   +L LA  D 
Sbjct: 463 DE----LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQDS 514

Query: 489 LNYDVRDRARFFKKLFSHN 507
            N D+RDR   + +L S +
Sbjct: 515 DNPDLRDRGYIYWRLLSTD 533

PyMOL of 2vgl

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1007
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-42
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-41
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1007
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	100.0
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.51
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.32
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.32
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.27
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.22
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.86
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.8
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.73
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.71
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.61
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.55
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.22
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.01
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.88
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.75
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.48
d1e42a1		120	Beta2-adaptin AP2 ear domain, N-terminal subdomain	97.46
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.33
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.06
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.87
d2dwya1		129	ADP-ribosylation factor binding protein Gga1 domai	94.41
d1p4ua_		145	ADP-ribosylation factor binding protein Gga3 domai	94.22
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.01
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	90.85
d2jaka1		343	Serine/threonine-protein phosphatase 2A regulatory	81.42

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure