Citrus Sinensis ID: 001845

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------
MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPIAPRPPAPVPPTPSVAQPVPPAAPSNDPGAMLAGLL
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHcccccccccccHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHEEEEccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccEEcccccEEEEEEEEEccEEEEEEEEEEccccccccEEEEEccccccEEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEEccEEEEccccccccHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHccccEEccccccccccEEEEEEEEEccccEEEEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccc
ccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHccccccccccEEcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccEEccccEEEEccEEEEEEEEccccccEEEEEEEEcccccccccEEEEEccccccEEcccccccccccccEEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHccccEEccccccccccEEEEEEEEEcccccEEEEEEEcccHHHccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcc
malsgmrgLSVFISDirncpnkeqERLRVDKELGNIRtrfknekglspyekkKYVWKMLYIYMLGYDVDFGHMEAVslisapkypekqVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVgniggrefaeslaPDVQKLIissscrplVRKKAALCLLRLyrknpdvvnvDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHeaywsclpkcdvpqeytyygipspwlqvKTMRalqyfptvedpntrRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIavrepnirylglenMTRMLMVTDVHDIIKRHQAQIitslkdpdisIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEkfapdlswYVDVILQLIDKagdfvsddiWFRVVQFVTNNEDLQPYAAAKAReyldkpaihETMVKVSAYLLGEYSHllarrpgcspkEIFSIIheklptvsMSTVAILLSTYAKILMhtqpadpelQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAempkfperqsslikkaedvevDTAEQSAIKLRAQQQQTSTALVVAdqssangtspvnqlglvkvpsmsssviysskwdfdqsrsststsspspspdllgdllgplaiegppvageseqnVVSGLEGVAAVDAAAIVPVtvqtnavepiGNIAERFHALClkdsgvlyedpyvqigikaewrghHGRLVLFlgnkntsplfsvqalilppshlkmelslvpetippraqvqcplevmnlrpsrdvaVLDFSYKFNTNMVNVKLRLPAVLNKFLQPitvsaeeffpqwrslsgpplklqevvrgvrpmpllEMANLFnschlivcpgldpnpnnlvastTFYSESTRAMLCLTRietdpadrtqlrmtvasgdptlTFELKEFIKEQLVsipiaprppapvpptpsvaqpvppaapsndpgamlagll
malsgmrglsvfisdirncpnkeqerlrvdkelgnirtrfknekglspyekkKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLiissscrplvRKKAALCLLRlyrknpdvvnvDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYfptvedpntrRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAqiitslkdpdisIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVAdqssangtspvnqlglVKVPSMSSSVIYSSKWDFDQSrsststsspspspDLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFfpqwrslsgpplklQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIetdpadrtqlrmtvasgdptlTFELKEFIKEQLVSIPIAPRPPAPVPPTPSVAQPVPPAAPSNDPGAMLAGLL
MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPsmsssviyssKWDFDQSRsststsspspspdllgdllgplAIEGPPVAGESEQNVVSGLEGvaavdaaaivpvtvQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIpiaprppapvpptpsvaqpvppaapSNDPGAMLAGLL
*********SVFISDIRN****************NIRTRFK**KGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAE**********************************************************************************************************************VVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIP************************************
*****MR*LSVFISDIRNCPNKEQERLRVDKELGNIRT**********YEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILA******************************************************************************************************************************************************IAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPS********************CPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSL********************EMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQL*****************************NDPGAMLAGLL
MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKL***********VVADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKW******************DLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPIAPRPPAPVPPTPSVAQPVPPAAPSNDPGAMLAGLL
*****MRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIK**********************************************************************************************************************************VEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPIA**********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPIAPRPPAPVPPTPSVAQPVPPAAPSNDPGAMLAGLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1006 2.2.26 [Sep-21-2011]
Q8LPK41013 AP-2 complex subunit alph yes no 0.991 0.984 0.809 0.0
Q8LPL61012 AP-2 complex subunit alph yes no 0.991 0.985 0.805 0.0
P18484938 AP-2 complex subunit alph yes no 0.895 0.960 0.380 0.0
P17427938 AP-2 complex subunit alph yes no 0.895 0.960 0.380 0.0
Q0VCK5938 AP-2 complex subunit alph yes no 0.894 0.959 0.384 0.0
P91926940 AP-2 complex subunit alph yes no 0.894 0.957 0.371 0.0
P17426977 AP-2 complex subunit alph no no 0.909 0.936 0.377 0.0
Q29N38939 AP-2 complex subunit alph yes no 0.899 0.963 0.372 0.0
O95782977 AP-2 complex subunit alph yes no 0.907 0.934 0.375 0.0
O94973939 AP-2 complex subunit alph no no 0.897 0.961 0.377 1e-177
>sp|Q8LPK4|AP2A2_ARATH AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD PE=1 SV=1 Back     alignment and function desciption
 Score = 1677 bits (4342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1020 (80%), Positives = 901/1020 (88%), Gaps = 23/1020 (2%)

Query: 3    LSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIY 62
            ++GMRGLSVFISD+RNC NKE ERLRVDKELGNIRT FKNEK L+PY+KKKYVWKMLYI+
Sbjct: 1    MTGMRGLSVFISDVRNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIH 60

Query: 63   MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNET 122
            MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFL+LAINTVRNDIIGRNET
Sbjct: 61   MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVRNDIIGRNET 120

Query: 123  FQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVD 182
            FQCLALT+VGNIGGR+FAESLAPDVQKL+ISSSCRPLVRKKAALCLLRL+RKNPD VNVD
Sbjct: 121  FQCLALTLVGNIGGRDFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLFRKNPDAVNVD 180

Query: 183  GWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVPQEY 231
            GWADRMAQLLDERDLGVLTSS SLLVALVSNNHEAY SCLPKC           DVPQEY
Sbjct: 181  GWADRMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERLARNQDVPQEY 240

Query: 232  TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVL 291
            TYYGIPSPWLQVK MRALQYFPT+EDP+TR++LFEVLQRILMGTDVVKNVNKNNASHAVL
Sbjct: 241  TYYGIPSPWLQVKAMRALQYFPTIEDPSTRKALFEVLQRILMGTDVVKNVNKNNASHAVL 300

Query: 292  FEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQ 351
            FEAL+LVMHLDAEKEMMSQC+ALLGKFI+VREPNIRYLGLENMTRMLMVTDV DIIK+HQ
Sbjct: 301  FEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYLGLENMTRMLMVTDVQDIIKKHQ 360

Query: 352  AQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAIL 411
            +QIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA+F+MREELSLKAAIL
Sbjct: 361  SQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREELSLKAAIL 420

Query: 412  AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPA 471
            AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAA+KAREY+DK A
Sbjct: 421  AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAASKAREYMDKIA 480

Query: 472  IHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMH 531
            IHETMVKVSAY+LGEY HLLAR+PGCS  E+FSI+HEKLPTVS  T+ ILLSTYAK+LMH
Sbjct: 481  IHETMVKVSAYILGEYGHLLARQPGCSASELFSILHEKLPTVSTPTIPILLSTYAKLLMH 540

Query: 532  TQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSS 591
             QP DPELQ ++WA+F KYESCI+VEIQQRAVEYF LS+KG A MD+LAEMPKFPERQSS
Sbjct: 541  AQPPDPELQKKVWAVFKKYESCIDVEIQQRAVEYFELSKKGPAFMDVLAEMPKFPERQSS 600

Query: 592  LIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSSSV 651
            LIKKAE+VE DTA+QSAIKLRA QQQ S A+V+AD    NG  P      +KVP +S S 
Sbjct: 601  LIKKAENVE-DTADQSAIKLRA-QQQPSNAIVLADPQPVNGAPPP-----LKVPILSGST 653

Query: 652  IYSS-KWDFDQSRSSTSTSSP-SPSPDLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVA- 708
               S          + S   P +PSPDLL DLLGPLAIE PP A   EQ+   G EGV  
Sbjct: 654  DPESVARSLSHPNGTLSNIDPQTPSPDLLSDLLGPLAIEAPPGAVSYEQHGPVGAEGVPD 713

Query: 709  AVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLV 768
             +D +AIVPV  QTN VE IGNIAERFHALCLKDSGVLYEDP++QIGIKAEWRGHHGRLV
Sbjct: 714  EIDGSAIVPVEEQTNTVELIGNIAERFHALCLKDSGVLYEDPHIQIGIKAEWRGHHGRLV 773

Query: 769  LFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLD 828
            LF+GNKNTSPL SVQALILPP+HL+++LS VP+TIPPRAQVQ PLEVMN+RPSRDVAVLD
Sbjct: 774  LFMGNKNTSPLTSVQALILPPAHLRLDLSPVPDTIPPRAQVQSPLEVMNIRPSRDVAVLD 833

Query: 829  FSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL 888
            FSYKF TN+V+ KLR+PA LNKFLQP+ +++EEFFPQWR++SGPPLKLQEVVRGVRP+ L
Sbjct: 834  FSYKFGTNVVSAKLRIPATLNKFLQPLQLTSEEFFPQWRAISGPPLKLQEVVRGVRPLAL 893

Query: 889  LEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVA 948
             EMANLFNS H+ +CPGLDPNPNNLVASTTFYSE+T AMLCL RIETDPADRTQLR+TV 
Sbjct: 894  PEMANLFNSFHVTICPGLDPNPNNLVASTTFYSETTGAMLCLARIETDPADRTQLRLTVG 953

Query: 949  SGDPTLTFELKEFIKEQLVSIPIAPRP--PAPVPPTPSVAQPVPPAAPSNDPGAMLAGLL 1006
            SGDPTLTFELKEFIKEQL++IP+  R   PA  P      QP  PAA ++DPGAMLAGLL
Sbjct: 954  SGDPTLTFELKEFIKEQLITIPMGSRALVPAAGPAPSPAVQPPSPAALADDPGAMLAGLL 1013
Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1 Back     alignment and function description
>sp|P18484|AP2A2_RAT AP-2 complex subunit alpha-2 OS=Rattus norvegicus GN=Ap2a2 PE=1 SV=3 Back     alignment and function description
>sp|P17427|AP2A2_MOUSE AP-2 complex subunit alpha-2 OS=Mus musculus GN=Ap2a2 PE=1 SV=2 Back     alignment and function description
>sp|Q0VCK5|AP2A2_BOVIN AP-2 complex subunit alpha-2 OS=Bos taurus GN=AP2A2 PE=1 SV=1 Back     alignment and function description
>sp|P91926|AP2A_DROME AP-2 complex subunit alpha OS=Drosophila melanogaster GN=alpha-Adaptin PE=1 SV=1 Back     alignment and function description
>sp|P17426|AP2A1_MOUSE AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1 Back     alignment and function description
>sp|Q29N38|AP2A_DROPS AP-2 complex subunit alpha OS=Drosophila pseudoobscura pseudoobscura GN=alpha-Adaptin PE=3 SV=1 Back     alignment and function description
>sp|O95782|AP2A1_HUMAN AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3 Back     alignment and function description
>sp|O94973|AP2A2_HUMAN AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1006
2254363631015 PREDICTED: AP-2 complex subunit alpha-2 0.994 0.985 0.879 0.0
2555730141018 AP-2 complex subunit alpha, putative [Ri 0.995 0.983 0.878 0.0
3565657131020 PREDICTED: AP-2 complex subunit alpha-2- 0.999 0.985 0.871 0.0
3565435341018 PREDICTED: AP-2 complex subunit alpha-2- 0.997 0.985 0.872 0.0
459351351080 putative adapitin protein [Ipomoea trifi 0.994 0.925 0.828 0.0
2241320921014 predicted protein [Populus trichocarpa] 0.994 0.986 0.865 0.0
2241030111015 predicted protein [Populus trichocarpa] 0.993 0.984 0.871 0.0
4494560781019 PREDICTED: AP-2 complex subunit alpha-1- 0.996 0.983 0.850 0.0
2978124031016 hypothetical protein ARALYDRAFT_489126 [ 0.992 0.982 0.812 0.0
152429641013 AP-2 complex subunit alpha-2 [Arabidopsi 0.991 0.984 0.809 0.0
>gi|225436363|ref|XP_002270388.1| PREDICTED: AP-2 complex subunit alpha-2 [Vitis vinifera] gi|297734861|emb|CBI17095.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1797 bits (4654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1021 (87%), Positives = 931/1021 (91%), Gaps = 21/1021 (2%)

Query: 1    MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLY 60
            MALSGMRGLSVFISDIRNC NKEQERLRVDKELGN+RTRFKNEKGL+PYEKKKYVWKMLY
Sbjct: 1    MALSGMRGLSVFISDIRNCQNKEQERLRVDKELGNVRTRFKNEKGLTPYEKKKYVWKMLY 60

Query: 61   IYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRN 120
            IYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRN
Sbjct: 61   IYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRN 120

Query: 121  ETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN 180
            ETFQCLALTMVGNIGGREFAESLAPDVQKL+ISSSCRPLVRKKAALCLLRLYRKNPDVVN
Sbjct: 121  ETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVN 180

Query: 181  VDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVPQ 229
            VDGW+DRMAQLLDERDLGVLTSSMSLLVALVSNNH+AYWSCLPKC           DVPQ
Sbjct: 181  VDGWSDRMAQLLDERDLGVLTSSMSLLVALVSNNHDAYWSCLPKCVKILERLARNQDVPQ 240

Query: 230  EYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA 289
            EYTYYGIP+PWLQVKTMRALQYFPT+EDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA
Sbjct: 241  EYTYYGIPTPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA 300

Query: 290  VLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKR 349
            VLFEALALVMHLDAEKEMMSQC+ALLGKFIAVREPNIRYLGLENMTRMLMV+DV DIIKR
Sbjct: 301  VLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVSDVQDIIKR 360

Query: 350  HQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAA 409
            HQAQIITSLKDPDISIRRRALDLLYGMCD+SNAKDIVEELLQYLS+ADFAMREELSLKAA
Sbjct: 361  HQAQIITSLKDPDISIRRRALDLLYGMCDISNAKDIVEELLQYLSSADFAMREELSLKAA 420

Query: 410  ILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDK 469
            ILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDK
Sbjct: 421  ILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDK 480

Query: 470  PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKIL 529
            PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIF IIHEKLPTVS STV ILLSTYAKIL
Sbjct: 481  PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFGIIHEKLPTVSTSTVPILLSTYAKIL 540

Query: 530  MHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQ 589
            MHTQP+DPELQNQIWAIF+KYESCI+VEIQQRAVEYFALSRKGAALMDILAEMPKFPERQ
Sbjct: 541  MHTQPSDPELQNQIWAIFSKYESCIDVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQ 600

Query: 590  SSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSS 649
            SSL+KKAED EVDTAEQSAIKLRA QQQTS ALVV DQ  ANGT  V QLGLV VPS ++
Sbjct: 601  SSLLKKAEDAEVDTAEQSAIKLRA-QQQTSNALVVTDQRPANGTPYVGQLGLVMVPSSAN 659

Query: 650  S---VIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVSGLEG 706
            +   +        + + S     SPSPS DLLGDLLGPLAIEGPP A    ++V+   EG
Sbjct: 660  ADHNLENQGPAQENGTLSQVDPQSPSPSADLLGDLLGPLAIEGPPGAAAPTEHVIPASEG 719

Query: 707  -VAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHG 765
                 DA A+ PV  QTN+V+PIGNIAERFHALCLKDSGVLYEDPY+QIGIKAEWR HHG
Sbjct: 720  DPNPADALALAPVDEQTNSVQPIGNIAERFHALCLKDSGVLYEDPYIQIGIKAEWRAHHG 779

Query: 766  RLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVA 825
            RLVLFLGNKNTS L SVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVA
Sbjct: 780  RLVLFLGNKNTSSLASVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVA 839

Query: 826  VLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRP 885
            VLDFSYKF T+ VNVKLRLPAVLNKFL PI+V+AEEFFPQWRSLSGPPLKLQEVVRGVRP
Sbjct: 840  VLDFSYKFGTSSVNVKLRLPAVLNKFLHPISVTAEEFFPQWRSLSGPPLKLQEVVRGVRP 899

Query: 886  MPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRM 945
            M LLEMANLFNS  L+VCPGLDPN NNLVASTTFYSESTRAMLCL RIETDPADRTQLRM
Sbjct: 900  MLLLEMANLFNSLRLMVCPGLDPNANNLVASTTFYSESTRAMLCLMRIETDPADRTQLRM 959

Query: 946  TVASGDPTLTFELKEFIKEQLVSIPIAPRPPAPVPPTPSVAQPVPPAAPSNDPGAMLAGL 1005
            TV+SGDPTLTFELKEFIKEQLVSIP A RPPA     P VAQP        DPGAMLAGL
Sbjct: 960  TVSSGDPTLTFELKEFIKEQLVSIPTATRPPA-----PEVAQPTSAVTSLTDPGAMLAGL 1014

Query: 1006 L 1006
            L
Sbjct: 1015 L 1015

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573014|ref|XP_002527437.1| AP-2 complex subunit alpha, putative [Ricinus communis] gi|223533172|gb|EEF34929.1| AP-2 complex subunit alpha, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356565713|ref|XP_003551082.1| PREDICTED: AP-2 complex subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356543534|ref|XP_003540215.1| PREDICTED: AP-2 complex subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|45935135|gb|AAS79593.1| putative adapitin protein [Ipomoea trifida] Back     alignment and taxonomy information
>gi|224132092|ref|XP_002328183.1| predicted protein [Populus trichocarpa] gi|222837698|gb|EEE76063.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103011|ref|XP_002312889.1| predicted protein [Populus trichocarpa] gi|222849297|gb|EEE86844.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456078|ref|XP_004145777.1| PREDICTED: AP-2 complex subunit alpha-1-like [Cucumis sativus] gi|449510835|ref|XP_004163776.1| PREDICTED: AP-2 complex subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297812403|ref|XP_002874085.1| hypothetical protein ARALYDRAFT_489126 [Arabidopsis lyrata subsp. lyrata] gi|297319922|gb|EFH50344.1| hypothetical protein ARALYDRAFT_489126 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242964|ref|NP_197670.1| AP-2 complex subunit alpha-2 [Arabidopsis thaliana] gi|75157386|sp|Q8LPK4.1|AP2A2_ARATH RecName: Full=AP-2 complex subunit alpha-2; AltName: Full=Adapter-related protein complex 2 subunit alpha-2; AltName: Full=Adaptor protein complex AP-2 subunit alpha-2; AltName: Full=Alpha-adaptin 2; AltName: Full=Clathrin assembly protein complex 2 alpha-C large chain; Short=At-aC-Ad; Short=At-alphaC-Ad gi|20466360|gb|AAM20497.1| alpha-adaptin C-like protein [Arabidopsis thaliana] gi|332005692|gb|AED93075.1| AP-2 complex subunit alpha-2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1006
TAIR|locus:21624191012 alpha-ADR "alpha-adaptin" [Ara 0.627 0.623 0.871 0.0
TAIR|locus:21575101013 AT5G22780 [Arabidopsis thalian 0.627 0.622 0.869 0.0
DICTYBASE|DDB_G0273501989 ap2a1-2 "adaptor-related prote 0.577 0.587 0.493 2.1e-182
DICTYBASE|DDB_G0273439989 ap2a1-1 "adaptor-related prote 0.577 0.587 0.493 2.1e-182
RGD|1306254977 Ap2a1 "adaptor-related protein 0.584 0.601 0.459 6.1e-170
UNIPROTKB|Q66HM2939 Ap2a2 "AP-2 complex subunit al 0.582 0.624 0.459 7.8e-170
MGI|MGI:101921977 Ap2a1 "adaptor-related protein 0.584 0.601 0.459 1.3e-169
UNIPROTKB|J9NWS6956 AP2A1 "Uncharacterized protein 0.584 0.615 0.459 2.1e-169
UNIPROTKB|F1PE67982 AP2A1 "Uncharacterized protein 0.584 0.598 0.459 3.4e-169
UNIPROTKB|F1RH60978 AP2A1 "Uncharacterized protein 0.584 0.601 0.459 3.4e-169
TAIR|locus:2162419 alpha-ADR "alpha-adaptin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2888 (1021.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 561/644 (87%), Positives = 601/644 (93%)

Query:     3 LSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIY 62
             ++GMRGLSVFISD+RNC NKE ERLRVDKELGNIRT FKNEK L+PY+KKKYVWKMLYI+
Sbjct:     1 MTGMRGLSVFISDVRNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIH 60

Query:    63 MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNET 122
             MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFL+LAINTVRNDIIGRNET
Sbjct:    61 MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVRNDIIGRNET 120

Query:   123 FQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVD 182
             FQCLALT+VGNIGGR+FAESLAPDVQKL+ISSSCRPLVRKKAALCLLRL+RKNPD VNVD
Sbjct:   121 FQCLALTLVGNIGGRDFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLFRKNPDAVNVD 180

Query:   183 GWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVPQEY 231
             GWADRMAQLLDERDLGVLTSS SLLVALVSNNHEAY SCLPKC           DVPQEY
Sbjct:   181 GWADRMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERLARNQDVPQEY 240

Query:   232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVL 291
             TYYGIPSPWLQVK MRALQYFPT+EDP+TR++LFEVLQRILMGTDVVKNVNKNNASHAVL
Sbjct:   241 TYYGIPSPWLQVKAMRALQYFPTIEDPSTRKALFEVLQRILMGTDVVKNVNKNNASHAVL 300

Query:   292 FEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQ 351
             FEAL+LVMHLDAEKEMMSQC+ALLGKFI+VREPNIRYLGLENMTRMLMVTDV DIIK+HQ
Sbjct:   301 FEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYLGLENMTRMLMVTDVQDIIKKHQ 360

Query:   352 AQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAIL 411
             +QIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA+F+MREELSLKAAIL
Sbjct:   361 SQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREELSLKAAIL 420

Query:   412 AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPA 471
             AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAA+KAREYLDK A
Sbjct:   421 AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAASKAREYLDKIA 480

Query:   472 IHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMH 531
             IHETMVKVSAY+LGEY HLLAR+PGCS  E+FSI+HEKLPT+S  T+ ILLSTYAK+LMH
Sbjct:   481 IHETMVKVSAYILGEYGHLLARQPGCSASELFSILHEKLPTISTPTIPILLSTYAKLLMH 540

Query:   532 TQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSS 591
              QP DPELQ ++WA+F KYESCI+VEIQQRAVEYF LS+KG A MD+LAEMPKFPERQSS
Sbjct:   541 AQPPDPELQKKVWAVFKKYESCIDVEIQQRAVEYFELSKKGPAFMDVLAEMPKFPERQSS 600

Query:   592 LIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSP 635
             LIKKAE+VE DTA+QSAIKLRAQQQ  S A+V+ADQ   NG  P
Sbjct:   601 LIKKAENVE-DTADQSAIKLRAQQQP-SNAMVLADQQPVNGAPP 642
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2157510 AT5G22780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273501 ap2a1-2 "adaptor-related protein complex 2, alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273439 ap2a1-1 "adaptor-related protein complex 2, alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1306254 Ap2a1 "adaptor-related protein complex 2, alpha 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66HM2 Ap2a2 "AP-2 complex subunit alpha-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:101921 Ap2a1 "adaptor-related protein complex 2, alpha 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWS6 AP2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PE67 AP2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RH60 AP2A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0VCK5AP2A2_BOVINNo assigned EC number0.38400.89460.9594yesno
P91926AP2A_DROMENo assigned EC number0.37180.89460.9574yesno
Q29N38AP2A_DROPSNo assigned EC number0.37200.89960.9637yesno
P18484AP2A2_RATNo assigned EC number0.38040.89560.9605yesno
Q8LPL6AP2A1_ARATHNo assigned EC number0.80560.99100.9851yesno
O95782AP2A1_HUMANNo assigned EC number0.37520.90750.9344yesno
Q8LPK4AP2A2_ARATHNo assigned EC number0.80980.99100.9842yesno
P17427AP2A2_MOUSENo assigned EC number0.38040.89560.9605yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-112
pfam02296113 pfam02296, Alpha_adaptin_C, Alpha adaptin AP2, C-t 3e-19
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 1e-17
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 4e-09
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 3e-08
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 3e-04
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  356 bits (916), Expect = e-112
 Identities = 178/550 (32%), Positives = 284/550 (51%), Gaps = 36/550 (6%)

Query: 28  RVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEK 87
           R+ +EL  I     N     P +KK+ V K++Y+ MLG D+ F   E V L+++  +  K
Sbjct: 3   RIQQELARIL----NSFRDDPRKKKEAVKKLIYLIMLGEDISFLFFEVVKLVASNDFTLK 58

Query: 88  QVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDV 147
           ++GY+    L  E+ D   L  N+++ D+   N   + LAL  +  I   E A  LAPD+
Sbjct: 59  RLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDI 118

Query: 148 QKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLL 207
           +KL++     P VRKKAAL +L+LYRK+PD+V  D     + +LL ++D GV++++++LL
Sbjct: 119 KKLLVDRD--PYVRKKAALAILKLYRKDPDLV-RDFLVPELKELLSDKDPGVVSAAVALL 175

Query: 208 VALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEV 267
             +  N+       LP   V +      + +PWLQVK +R L  +   +    +    E+
Sbjct: 176 YEIRKNDRLYLNKLLPLL-VRRLCNLLTVCNPWLQVKILRLLTRYAPQDPREPK----EL 230

Query: 268 LQRILMGTDVVKNVNK-NNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNI 326
           L+ IL         N   N+++AVL+EA+  ++HLD E E++   +  LG+ ++  + N+
Sbjct: 231 LEDIL---------NLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENL 281

Query: 327 RYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDI 385
           RY+ L N+ ++L       +  +H   II  LK D DISIR RALDLLY + D SN K+I
Sbjct: 282 RYVALRNLNKILE-KHPPAV--QHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEI 338

Query: 386 VEELLQYLS-TADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFR 444
           V+ELL+Y+S  AD   + +L      LAEKF  D  W +DV+L+L+  AG +V D+I   
Sbjct: 339 VKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEV 398

Query: 445 VVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFS 504
           +   +    +L+ Y      E L+           + ++LGEY  L+      SP ++  
Sbjct: 399 IRDIIRKYPELREYILEHLCELLED-IESPEARAAALWILGEYGELIPN----SPSDLLR 453

Query: 505 IIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKY--ESCIEVEIQQRA 562
            I E     S+     LL+   K+       D E+QN I  +      +   ++E++ RA
Sbjct: 454 SILEVFVLESLKVRLALLTALVKL--SLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRA 511

Query: 563 VEYFALSRKG 572
           VEY  L    
Sbjct: 512 VEYLRLLSLA 521

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|190271 pfam02296, Alpha_adaptin_C, Alpha adaptin AP2, C-terminal domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1006
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 99.96
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 99.6
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 99.48
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.14
PTZ00429746 beta-adaptin; Provisional 99.04
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.57
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.56
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.47
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.42
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 98.3
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.2
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.2
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.19
PRK09687280 putative lyase; Provisional 98.19
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.17
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.1
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.1
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.06
PRK09687280 putative lyase; Provisional 98.05
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.05
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.02
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.89
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.88
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.81
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.76
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.65
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 97.58
KOG18241233 consensus TATA-binding protein-interacting protein 97.4
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 97.35
PF05804708 KAP: Kinesin-associated protein (KAP) 97.35
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.33
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.32
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.25
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.25
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 97.23
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.14
PF05804708 KAP: Kinesin-associated protein (KAP) 97.11
KOG18241233 consensus TATA-binding protein-interacting protein 97.09
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 96.85
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.8
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.78
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.76
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.74
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.65
COG5096757 Vesicle coat complex, various subunits [Intracellu 96.65
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.5
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.44
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.35
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 96.34
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.22
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.06
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 95.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.69
KOG12401431 consensus Protein kinase containing WD40 repeats [ 95.65
COG1413335 FOG: HEAT repeat [Energy production and conversion 95.57
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.5
KOG1242569 consensus Protein containing adaptin N-terminal re 95.46
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.25
KOG04141251 consensus Chromosome condensation complex Condensi 95.16
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 95.13
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.72
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 94.57
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 94.47
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 94.45
KOG1242569 consensus Protein containing adaptin N-terminal re 94.38
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.36
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 94.06
COG50981128 Chromosome condensation complex Condensin, subunit 93.94
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.71
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.69
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.59
KOG09151702 consensus Uncharacterized conserved protein [Funct 93.14
TIGR02270410 conserved hypothetical protein. Members are found 93.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 92.99
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 92.96
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 92.75
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 92.43
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 92.39
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 92.34
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.22
KOG4224550 consensus Armadillo repeat protein VAC8 required f 91.76
KOG01681051 consensus Putative ubiquitin fusion degradation pr 91.67
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.54
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 91.39
COG50981128 Chromosome condensation complex Condensin, subunit 91.25
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 91.23
PF14806129 Coatomer_b_Cpla: Coatomer beta subunit appendage p 90.92
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 90.76
KOG04141251 consensus Chromosome condensation complex Condensi 90.58
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 89.9
TIGR02270410 conserved hypothetical protein. Members are found 89.3
PF08167165 RIX1: rRNA processing/ribosome biogenesis 89.1
COG5218885 YCG1 Chromosome condensation complex Condensin, su 88.95
KOG2025892 consensus Chromosome condensation complex Condensi 88.81
KOG09151702 consensus Uncharacterized conserved protein [Funct 88.69
COG1413335 FOG: HEAT repeat [Energy production and conversion 88.45
KOG2025 892 consensus Chromosome condensation complex Condensi 88.35
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 88.33
PF13251182 DUF4042: Domain of unknown function (DUF4042) 88.28
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 88.25
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 88.22
KOG12481176 consensus Uncharacterized conserved protein [Funct 87.52
KOG1293678 consensus Proteins containing armadillo/beta-caten 87.46
KOG4224550 consensus Armadillo repeat protein VAC8 required f 87.11
PF1036392 DUF2435: Protein of unknown function (DUF2435) 87.06
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 86.98
PF14500262 MMS19_N: Dos2-interacting transcription regulator 86.8
KOG4199461 consensus Uncharacterized conserved protein [Funct 86.78
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 86.47
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 86.16
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 85.68
PF07718140 Coatamer_beta_C: Coatomer beta C-terminal region; 85.0
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 84.28
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 83.56
PF1036392 DUF2435: Protein of unknown function (DUF2435) 82.23
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 82.2
KOG2137700 consensus Protein kinase [Signal transduction mech 81.34
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 81.05
KOG2062929 consensus 26S proteasome regulatory complex, subun 80.19
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 80.19
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-194  Score=1612.56  Aligned_cols=905  Identities=49%  Similarity=0.779  Sum_probs=811.5

Q ss_pred             CCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCC
Q 001845            3 LSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAP   82 (1006)
Q Consensus         3 ~~~mrgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~   82 (1006)
                      +++||||+.||+|||+|+++|+|+|||++|+++||++|+..|.|++|+||||||||+||||+|||++|||||+++|++|+
T Consensus         7 ~~gmrGL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~   86 (938)
T KOG1077|consen    7 GDGMRGLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSN   86 (938)
T ss_pred             CCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcC
Confidence            47899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             CcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHH
Q 001845           83 KYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRK  162 (1006)
Q Consensus        83 ~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRK  162 (1006)
                      +|+||+||||++++++++++|++.|++|+|+|||.|.||.++||||+++||||++||++.+.++|.|+|+|+++.+||||
T Consensus        87 kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkq  166 (938)
T KOG1077|consen   87 KYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQ  166 (938)
T ss_pred             CccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCC-----------CCC-cc
Q 001845          163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVP-QE  230 (1006)
Q Consensus       163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l-----------~~~-~e  230 (1006)
                      |||+|++|+||++||++..++|.++|..+|+|+|.||++++.+++..|++.+|+.|+.|++..           ..+ .|
T Consensus       167 kaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qd  246 (938)
T KOG1077|consen  167 KAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQD  246 (938)
T ss_pred             HHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhh
Confidence            999999999999999999889999999999999999999999999999999999998887765           455 89


Q ss_pred             ccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCC---cccccccCCChhHHHHHHHHHHHhcCCcHHH
Q 001845          231 YTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASHAVLFEALALVMHLDAEKEM  307 (1006)
Q Consensus       231 y~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~---~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l  307 (1006)
                      |+||++|+||+|+|++|+|+.|++.+|+..+..+.++++++|+.++   .+++++|+|+.|||+||||++++|+++++++
T Consensus       247 YTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l  326 (938)
T KOG1077|consen  247 YTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL  326 (938)
T ss_pred             ceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence            9999999999999999999999998999999999999999997776   5689999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc-CcChhHHHHHHHHhhhccCcccHHHHH
Q 001845          308 MSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIV  386 (1006)
Q Consensus       308 ~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n~~Nv~~Iv  386 (1006)
                      +.+|++.|+.||+++++|+||++|++|++|+...+.+++|+.|++.|+.+|+ ++|.|||+||+||||.|||.+|++.||
T Consensus       327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV  406 (938)
T KOG1077|consen  327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV  406 (938)
T ss_pred             HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH
Confidence            9999999999999999999999999999999998888999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 001845          387 EELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREY  466 (1006)
Q Consensus       387 ~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~  466 (1006)
                      .||+.|+..+|+.+|+|++.|+++|+|||++|++||||++++|++.+|++++||||+|++|||+|+|++|.||+++++++
T Consensus       407 ~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~  486 (938)
T KOG1077|consen  407 AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEY  486 (938)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001845          467 LDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAI  546 (1006)
Q Consensus       467 L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~v  546 (1006)
                      |+.+.+||.|+|+++|||||||++|.++|+++|..+|.+|+++|+.|++.||+++||+++|    |.+.+||+++.|.++
T Consensus       487 Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiK----l~nl~PEi~~~v~~v  562 (938)
T KOG1077|consen  487 LQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIK----LINLFPEIKSNVQKV  562 (938)
T ss_pred             HhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHH----HHhhChhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999    667789999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHHHhcch--HHHHHhhhcCCCCCccchhHhhhhhhcccchhHHHHHHHHhhhhhccchhc-
Q 001845          547 FNKYESCIEVEIQQRAVEYFALSRKG--AALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALV-  623 (1006)
Q Consensus       547 l~~~~~s~d~EvqqRA~eyl~Ll~~~--~~~~~vl~~mP~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  623 (1006)
                      |+.+.+..|+|+||||+||+.|.+..  |+++.||++||||++|+|+|++||+++.+.....+           +..+. 
T Consensus       563 Fq~~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~-----------~~~~~~  631 (938)
T KOG1077|consen  563 FQLYSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLR-----------AGAGPK  631 (938)
T ss_pred             HHhhcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCchhccc-----------cccCCc
Confidence            99999999999999999999999984  99999999999999999999999998876443221           00000 


Q ss_pred             -ccccCCCCCCCCcccccccccCCCCCccccCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcccccc
Q 001845          624 -VADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVS  702 (1006)
Q Consensus       624 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~dl~g~~~~~~~~~~~~~~~~~~~  702 (1006)
                       -+.+.++.+++.+   +++...  .                            ...|..++   .++|++ . ...+..
T Consensus       632 ~~~~~~~~~~~~tp---~~v~~~--s----------------------------~st~~~~v---~~~p~~-n-~t~~~~  673 (938)
T KOG1077|consen  632 TLANPPPVASEPTP---SKVSKR--S----------------------------NSTDPLSV---PSPPPP-N-NTISSV  673 (938)
T ss_pred             ccCCCCcccCCCCc---ccccCC--C----------------------------CCCCcccC---CCCCCC-C-CCccCC
Confidence             0011111111111   000000  0                            00111111   000000 0 000000


Q ss_pred             CCcCcccccccccCCcc-cccCCcCCCCchHHHHHhhhccCceeeecCCCeEEEEEEeEecceeEEEEEEeecCCCCcce
Q 001845          703 GLEGVAAVDAAAIVPVT-VQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFS  781 (1006)
Q Consensus       703 g~~~~~~~~~~~~~~~~-~~~~~l~p~~~~~~~~~~ll~~~~GvlYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~~~lt~  781 (1006)
                      |+..+++ + ...++.+ ++...+++  +|..+|+|||++++||||||+++|||+|++|++++|++.+|||||+++|+++
T Consensus       674 ~~~~~~~-d-i~s~~~~~~s~~~~p~--~~~~~f~r~~~k~~GVLfed~~iQIgvk~e~r~~~grl~LfygNkts~~lt~  749 (938)
T KOG1077|consen  674 NSQIPSV-D-IFSGLDGYYSRQILPG--NAFYGFTRFCSKDNGVLFEDSLIQIGVKSETRNNLGRLYLFYGNKTSVPLTS  749 (938)
T ss_pred             CCCCCch-h-hhcCccccccccCCCh--hhhhhhhhheeccCcEEeeccceeEEEeeeccCcCCeEEEEecccccccccc
Confidence            0000000 0 0000000 01122334  8999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCc----eeEEeecCCcccCCCCeeEEEEEEEecCCCCCCcEEEEEEeeCCceEEEE--eccCceeecccccc
Q 001845          782 VQALILPPSH----LKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVK--LRLPAVLNKFLQPI  855 (1006)
Q Consensus       782 f~~~~~~p~~----l~~~~~~~~~tI~p~~q~q~~v~v~~~~~~~~~P~l~i~y~~~g~~~~~~--LklPi~~~kf~~p~  855 (1006)
                      |+.++.+|..    +..+..|++++|+||.|+||.+++.|...|.++|++.|+|++||..+...  +++|+.++||++|.
T Consensus       750 ~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil~isfk~g~ti~~~ta~l~lp~~iskf~~Pt  829 (938)
T KOG1077|consen  750 LSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPILAISFKFGGTINLKTAILKLPVLISKFFQPT  829 (938)
T ss_pred             cceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeEEEEEEeCCchhhhhhceechhhHhhhcCcc
Confidence            9999988753    33333477799999999999999999999999999999999999887776  99999999999999


Q ss_pred             cCChhhHHHHhhhcCCCCcceeEeecCCCCCCHHHHHHHHhccceEEecCCCCCCCcEEEEEEEeecCCCceeEEEEEee
Q 001845          856 TVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIET  935 (1006)
Q Consensus       856 ~~~~~~F~~rW~~i~~~~~E~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~~~~Lvrie~  935 (1006)
                      .|+.++||.|||+++++.+|.|++|+..++.+...+++.+.+||+++|+++||||+|+|+||||||++ .|+|||+|||+
T Consensus       830 ~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~~VDpnp~nlv~agii~t~t-q~vgCL~RiEp  908 (938)
T KOG1077|consen  830 ELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLDNVDPNPSNLVGAGIIHTKS-QNVGCLLRIEP  908 (938)
T ss_pred             cccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhccCCCCccceEEEEEEeecc-eeeeeEEEecc
Confidence            99999999999999998889999999889999999999999999999999999999999999999999 59999999999


Q ss_pred             CcccCceEEEEEEeCCCchHHHHHHHHHHHh
Q 001845          936 DPADRTQLRMTVASGDPTLTFELKEFIKEQL  966 (1006)
Q Consensus       936 ~~~~~~~~ritvRs~~~~ls~~i~~~i~~~l  966 (1006)
                      +.++. ++|+|+||+++.+++.++++|+.++
T Consensus       909 n~~~~-~~rltvrss~~tlak~l~e~l~nqf  938 (938)
T KOG1077|consen  909 NAQAQ-MYRLTVRTSKPTLAKELVELLKNQF  938 (938)
T ss_pred             CCcce-EEEEEEecCCchHHHHHHHHHhhcC
Confidence            98777 9999999999999999999999875

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 1e-155
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 1e-155
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 7e-71
1qts_A247 Crystal Structure Of The Ap-2 Clathrin Adaptor Alph 1e-26
1b9k_A238 Alpha-Adaptin Appendage Domain, From Clathrin Adapt 2e-26
3hs8_A273 Intersectin 1-Peptide-Ap2 Alpha Ear Complex Length 4e-26
1w80_A250 Crystal Structure Of The Alpha-adaptin Appendage Do 6e-26
1qtp_A247 Crystal Structure Of The Ap-2 Clathrin Adaptor Alph 3e-25
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 5e-09
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 6e-09
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 1e-07
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure 
Iteration: 1

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/612 (45%), Positives = 399/612 (65%), Gaps = 26/612 (4%)
Query: 5   GMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYML 64
           GMRGL+VFISDIRNC +KE E  R++KEL NIR++FK +K L  Y KKKYV K+L+I++L
Sbjct: 9   GMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL 68
Query: 65  GYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQ 124
           G+D+DFGHMEAV+L+S+ +Y EKQ+GY+  S L+N N + +RL  N ++ND+  RN TF 
Sbjct: 69  GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFM 128
Query: 125 CLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGW 184
            LAL  + N+G RE AE+ A ++ K++++      V++ AALCLLRLYR +PD+V +  W
Sbjct: 129 GLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDW 188
Query: 185 ADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL-------------PKCDVPQEY 231
             R+  LL+++ LGV+T++ SL+  L   N E + + +                D+ Q+Y
Sbjct: 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDL-QDY 247
Query: 232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASH 288
           TYY +P+PWL VK +R LQ +P  EDP  R  L E L+ IL         K V  +NA +
Sbjct: 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307
Query: 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK 348
           AVLFEA++L++H D+E  ++ +    LG+F+  RE N+RYL LE+M  +      H+ +K
Sbjct: 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK 367
Query: 349 RHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLK 407
            H   +I +LK + D+S+R+RA+DLLY MCD SNA+ IV E+L YL TAD+++REE+ LK
Sbjct: 368 THIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427
Query: 408 AAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 467
            AILAEK+A D +WYVD IL LI  AGD+VS+++W+RV+Q V N +D+Q YAA    E L
Sbjct: 428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL 487
Query: 468 DKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527
             PA HE +VKV  Y+LGE+ +L+A  P  SP   F+++H K    S+ T A+LLSTY K
Sbjct: 488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547
Query: 528 ILMHTQPADPELQNQIWAIFNKYESC--IEVEIQQRAVEYFALSRKGAA--LMDILAEMP 583
            +       PE++  I  +          +VE+QQRAVEY  LS   +   L  +L EMP
Sbjct: 548 FV----NLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMP 603
Query: 584 KFPERQSSLIKK 595
            FPER+SS++ K
Sbjct: 604 PFPERESSILAK 615
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure
>pdb|1QTS|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha- Appendage Length = 247 Back     alignment and structure
>pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Clathrin Adaptor Ap2 Length = 238 Back     alignment and structure
>pdb|3HS8|A Chain A, Intersectin 1-Peptide-Ap2 Alpha Ear Complex Length = 273 Back     alignment and structure
>pdb|1W80|A Chain A, Crystal Structure Of The Alpha-adaptin Appendage Domain, From The Ap2 Adaptor Complex, Bound To 2 Peptides From Synaptojanin170 Length = 250 Back     alignment and structure
>pdb|1QTP|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha- Appendage Length = 247 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 0.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 0.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-136
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 2e-72
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 6e-72
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 2e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-04
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
 Score =  621 bits (1602), Expect = 0.0
 Identities = 280/614 (45%), Positives = 397/614 (64%), Gaps = 24/614 (3%)

Query: 4   SGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYM 63
            GMRGL+VFISDIRNC +KE E  R++KEL NIR++FK +K L  Y KKKYV K+L+I++
Sbjct: 8   EGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFL 67

Query: 64  LGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETF 123
           LG+D+DFGHMEAV+L+S+ +Y EKQ+GY+  S L+N N + +RL  N ++ND+  RN TF
Sbjct: 68  LGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTF 127

Query: 124 QCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDG 183
             LAL  + N+G RE AE+ A ++ K++++      V++ AALCLLRLYR +PD+V +  
Sbjct: 128 MGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187

Query: 184 WADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC------------DVPQEY 231
           W  R+  LL+++ LGV+T++ SL+  L   N E + + +                  Q+Y
Sbjct: 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDY 247

Query: 232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASH 288
           TYY +P+PWL VK +R LQ +P  EDP  R  L E L+ IL         K V  +NA +
Sbjct: 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307

Query: 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK 348
           AVLFEA++L++H D+E  ++ +    LG+F+  RE N+RYL LE+M  +      H+ +K
Sbjct: 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK 367

Query: 349 RHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLK 407
            H   +I +LK + D+S+R+RA+DLLY MCD SNA+ IV E+L YL TAD+++REE+ LK
Sbjct: 368 THIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427

Query: 408 AAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 467
            AILAEK+A D +WYVD IL LI  AGD+VS+++W+RV+Q V N +D+Q YAA    E L
Sbjct: 428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL 487

Query: 468 DKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527
             PA HE +VKV  Y+LGE+ +L+A  P  SP   F+++H K    S+ T A+LLSTY K
Sbjct: 488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547

Query: 528 ILMHTQPADPELQNQIWAIFNKYE--SCIEVEIQQRAVEYFALSRKG--AALMDILAEMP 583
            +       PE++  I  +          +VE+QQRAVEY  LS       L  +L EMP
Sbjct: 548 FVNL----FPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMP 603

Query: 584 KFPERQSSLIKKAE 597
            FPER+SS++ K +
Sbjct: 604 PFPERESSILAKLK 617
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Length = 273 Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Length = 247 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1006
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-163
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-96
d1kyfa1133 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, 9e-40
d1kyfa2114 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal 7e-39
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1006
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 99.93
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 99.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.69
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.54
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.43
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.33
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.2
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.16
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.15
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.15
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.9
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.89
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.84
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.82
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 98.81
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.81
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 98.77
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 98.75
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 98.72
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 98.59
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.59
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.52
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.5
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.47
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.47
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.43
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.1
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 97.78
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 97.44
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.27
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.84
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.26
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.24
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.22
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.11
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.44
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 91.83
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure