Citrus Sinensis ID: 001849

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-----

MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISDVEMSVDGREVREVREVREVQRGWRTILGLVNPYTLCSNSPTNEWVEVVD

ccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEEEccccccccccccccccccEEEccccccccccccccccHHHHccccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccEEccccccccHHcHHHccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHcccccccccEEEEcccccccccHHHHHccccccccccEEEEEEcccccccccHHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEcccccEEEEccccccccccEEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEccccccccHHcccccccccEEEEEcccccccccccccccccccEEEEEcccccEEccccccccccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccccEEEEcccHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccEEEEccEEEccccccEEEEEEHHHHHccHHEEEcccccccccccccccccEEccc

cccHHHHHHHHHcccEEEEEccccccccccccccccEEEEEEcccccccccccHHHHHHcccEEEEccccccccccHHHHHHHHHHHccEEEEEEEcccccccccccccccHHEEEEEcccccHccccccHHHHHHHHHHHHHcccHHHcccccHHcccccEEEEccccccHHcccccccccccccEccEEEEcccccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHcccccccEEEEEEcccccccccccccccHHHcEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEEcccHHHHHHHccccccccHcccccccEEEEccccccccccHHHccHHHEEEcccccccccccccccccEEEEEccccccEcccccccccccEEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEcccccHccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccccHccccHHHccHHHcccccccccccEEEcccccccccccccccccccccccccccccccccEEEEcccccHccccHHccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccccHcccccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHHccccccccccccEEEEccccccccccccHcccccccccccccccccEEEEcccccHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHcccccccccccccEccEEEcccccccccccccccHHHHHHHHcccccccHcccccccccccccEEEEEEcc

MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIrgdydgvqrfgdlydiQHLRTFLPvilsnskpgylapsmlpkllklqSLRVFSLrgyrilelpdsvgdlrYLRYLNlsgteirtlpESVSKLYNLHSLLLEDCDRLEKLCADMGnlvklhhlknsntksleempvgigRLTCLQTLCSFvvgkdsgsglRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEmgvldmlkphtnleqfcikgyggmkfptwlgdssfsklvtlkfkncdmctalpsvgqlpslkhltvRGMSKvkrlgsefygddspipfprletlrfedlqewedsiphgssqgverfpkLRELRILRCSKlkgtfpehlpALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWesatghlgsqnsvvcrdtsnqvflagplkpqlpKLEELILSTKEQTYIWKShdgllqdvcslksleirscpklqsLVAEEEKDQQQQLYELLEYLRLSYCEGlvklpqsslslsslreIEIYGCrslvsfpevalpsklkkIEISSCDalkslpeawmcdtnssleileisgcdsltyiagvqlppslkrlkichcdnirtltveegiqcssgrrytSSLLEhleiyscpsltcifsknelpatleslevgnlppsLKLLLVWGCSKLESIAEMLdnntslekinisgcgnlqtlpsglhnlCQLQEISiascgnlvsspegglpcAKLAMLAIYNCKRLEALPKGLHNLKSLQElrigkgvalpsleedglptnLHVLLINGNMEIWKSMIERgrgfhrfsslrqltimncdddmvsfppkaddkgsgtvlplpasltylriegfpnlerlTSSIVDLqnltglvlgncpklkyfpekglpssllqlsinrcplieekcrkdggQYWDLLthiprveisdvemsvdgrevrevrEVREVQRGWRTILGlvnpytlcsnsptnewvevvd

MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIlelpdsvgdlrYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVgkdsgsglRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTAlpsvgqlpslkhlTVRGMSKVKRlgsefygddspipfPRLETLRFEDLQEWEdsiphgssqgverfpkLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFlagplkpqlpKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLtveegiqcssgRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLThiprveisdvemsvdgrevrevrevrevqrgwrtilglvnpytlcsnsptnewvevvd

MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGplkpqlpkleelilSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAeeekdqqqqlyelleylrlSYCEGLVKLPQsslslsslREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISDVEMSVDGrevrevrevrevQRGWRTILGLVNPYTLCSNSPTNEWVEVVD

*****SDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEW************ERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLV********QQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF*********GTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISDVEMSVDGREVREVREVREVQRGWRTILGLVNPYTLCSNSPTNEWV****

MHDLVSDLAQWAAGEMYFTMEYTSE*****RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGS**R**ETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESAT**LGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEE***QQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPE*****TNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEG*******RYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKS******GFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISDVEMSVDGR**REVREVREVQRGWRTILGLVNPYTLCSNSPTNEWVEVVD

*HDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISDVEMSVDGREVREVREVREVQRGWRTILGLVNPYTLCSNSPTNEWVEVVD

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1005	2.2.26 [Sep-21-2011]
Q9LRR5		1424	Putative disease resistan	yes	no	0.871	0.615	0.306	1e-93
Q9LRR4		1054	Putative disease resistan	no	no	0.4	0.381	0.392	5e-72
Q7XA42		979	Putative disease resistan	N/A	no	0.454	0.466	0.302	2e-48
Q7XBQ9		970	Disease resistance protei	N/A	no	0.434	0.450	0.331	1e-44
Q7XA39		988	Putative disease resistan	N/A	no	0.433	0.441	0.316	2e-43
Q7XA40		992	Putative disease resistan	N/A	no	0.465	0.471	0.313	2e-42
P0DI18		1049	Probable disease resistan	no	no	0.340	0.326	0.292	1e-10
P0DI17		1049	Probable disease resistan	no	no	0.340	0.326	0.292	1e-10
Q38834		852	Disease resistance RPP13-	no	no	0.255	0.301	0.282	1e-08
Q9RBS2		1024	Protein PopC OS=Ralstonia	no	no	0.286	0.281	0.259	2e-07

>sp\|Q9LRR5\|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1	Back alignment and function desciption

 Score =  345 bits (884), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 310/1010 (30%), Positives = 470/1010 (46%), Gaps = 134/1010 (13%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLA+  +G+  F +E     +         RH S+ R   D    F  +   + 
Sbjct: 487  MHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEF 542

Query: 61   LRTFLPVILSNSKPGYLAPSML------PKLLKLQSLRVFSLRGYRILELPDSVGDLRYL 114
            LRT LP     + P  L    L      P L  L  LR+ SL  Y+I  LP S+  L+ L
Sbjct: 543  LRTILPF----NSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLL 598

Query: 115  RYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEE 174
            RYL+LS T+I+ LPE V  L NL +LLL +C  L  L   +  L+ L  L    T  L E
Sbjct: 599  RYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVE 657

Query: 175  MPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD 234
            MP GI +L  LQ L +FV+G+ SG+GL ELK L+ LRGTL IS L+NV    +A+DA L 
Sbjct: 658  MPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLK 717

Query: 235  RKENLKELWLRWTLYGS------YSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTW 288
            RK  L  L L+WT+ GS      ++  A  +  VL ML+PH +L+ FCI+ Y G  FP W
Sbjct: 718  RKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKW 777

Query: 289  LGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY---GDDSPI 345
            LGDSSF  + ++   +C++C +LP VGQLPSLK+L++   + ++++G +F+    +   +
Sbjct: 778  LGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGV 837

Query: 346  PFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLV 405
            PF  L+ L+F  +  W++ I      G+  FP L++L I RC  L+  FPE LP+   + 
Sbjct: 838  PFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVT 895

Query: 406  IEGCEELLV---------SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCR----- 451
            I  C    V         S++++P     I S  ++ +  S TG+  S  S   +     
Sbjct: 896  ISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRREL-SSPTGNPKSDASTSAQPGFAS 954

Query: 452  ----DTSNQV-----FLAGPLKPQLPKLEE-------LILSTKEQTYIWKSHDGLLQDVC 495
                +  N+V       + P   Q    ++       L    +E   I   + G + D+ 
Sbjct: 955  SSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLGSLPQQFEEPAVISARYSGYISDIP 1014

Query: 496  S-----LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSS 550
            S     +    +   PK +  +       Q   Y +   +        +K  Q     + 
Sbjct: 1015 STLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQYGIKSSVPSPRSSEAIKPSQYDDDETD 1074

Query: 551  LREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDS 610
            +  +++     L+  P+      L+ + I SCD L SLPE  + ++  +L  L I  C S
Sbjct: 1075 MEYLKVTDISHLMELPQ-----NLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIACHS 1128

Query: 611  LTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEI-YSCPSLTC 669
            L    G   P +LK L I  C   + L   E +Q +  R Y  S LE+L I  SC +L  
Sbjct: 1129 LESFPGSHPPTTLKTLYIRDC---KKLNFTESLQPT--RSY--SQLEYLFIGSSCSNLV- 1180

Query: 670  IFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI---AEMLDNNTSLEKINISGCGN 726
                   P +L         P L+ L +  C   ++    A + D+  +LE + I  C N
Sbjct: 1181 -----NFPLSLF--------PKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPN 1227

Query: 727  LQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLK 786
            L+T                         P+GGLP  KL+ + + NCK+L+ALP+ L  L 
Sbjct: 1228 LETF------------------------PQGGLPTPKLSSMLLSNCKKLQALPEKLFGLT 1263

Query: 787  SLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGR-GFHRFSSLRQLTIM 845
            SL  L I K   + ++   G P+NL  L I+    +   +  R   G     +LR L I 
Sbjct: 1264 SLLSLFIIKCPEIETIPGGGFPSNLRTLCIS----LCDKLTPRIEWGLRDLENLRNLEID 1319

Query: 846  NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSIVDLQNLTGLVLGN 904
              ++D+ SFP +           LP S+  LRI  F NL+ L      D + +  + +  
Sbjct: 1320 GGNEDIESFPEEG---------LLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISG 1370

Query: 905  CPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEI 954
            C KL+   ++ LP  L  L I+ C L+ E   +   +++ +L +IP VEI
Sbjct: 1371 CDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEI 1418

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LRR4\|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1	Back alignment and function description

>sp\|Q7XA42\|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2	Back alignment and function description

>sp\|Q7XBQ9\|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1	Back alignment and function description

>sp\|Q7XA39\|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1	Back alignment and function description

>sp\|Q7XA40\|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2	Back alignment and function description

>sp\|P0DI18\|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1	Back alignment and function description

>sp\|P0DI17\|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1	Back alignment and function description

>sp\|Q38834\|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2	Back alignment and function description

>sp\|Q9RBS2\|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1005
284026888		1424	CC-NBS-LRR protein [Quercus suber]	0.902	0.636	0.414	1e-174
400131587		1388	FB_MR5 [Malus x robusta]	0.868	0.628	0.411	1e-161
225449649		1418	PREDICTED: putative disease resistance p	0.888	0.629	0.395	1e-156
356554923		1399	PREDICTED: putative disease resistance R	0.874	0.628	0.384	1e-148
224059584		1418	cc-nbs-lrr resistance protein [Populus t	0.901	0.638	0.388	1e-143
225450023		1396	PREDICTED: putative disease resistance p	0.861	0.620	0.369	1e-142
147766392		1471	hypothetical protein VITISV_007674 [Viti	0.870	0.594	0.367	1e-141
225450003		1452	PREDICTED: putative disease resistance R	0.898	0.621	0.378	1e-139
359487416		1472	PREDICTED: putative disease resistance p	0.870	0.594	0.363	1e-138
359487225		1373	PREDICTED: putative disease resistance R	0.856	0.627	0.375	1e-138

>gi\|284026888\|gb\|ADB66335.1\| CC-NBS-LRR protein [Quercus suber]	Back alignment and taxonomy information

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 400/965 (41%), Positives = 564/965 (58%), Gaps = 58/965 (6%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLAQW AG  YF +E   + N+Q + S   RHLS++   YDG ++F  + + +H
Sbjct: 491  MHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAISEFKH 550

Query: 61   LRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNL 119
            LRTFLP++       YL+  ++ +LL KLQ+LRV SL GYRI+ LP ++GDL++LRYL+L
Sbjct: 551  LRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDL 610

Query: 120  SGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI 179
            S T++R+LP S+S LYNL +LLLE+C  L+ L  D G L  L HL    +  LE MP+ I
Sbjct: 611  SCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSI 670

Query: 180  GRLTCLQTLCSFVVGK-DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
            G L+ LQTL +FVVGK DS   +REL  L  LRGTLCIS LENV    +A D+ L  K++
Sbjct: 671  GNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLYGKQD 730

Query: 239  LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
            L E+ + W+   + S++ ET++ VL+ML+P+  L++  +K YGG KFPTW+GD SFS LV
Sbjct: 731  LNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLV 790

Query: 299  TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDL 358
             L+F+NCD C +LP VGQLP LK L ++GM+ VK +G EFYG+    PF  LETL FED+
Sbjct: 791  LLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFEDM 850

Query: 359  QEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSS 418
              W + IP G +   E F  L +L I+RC  L    P+HLP+L+ LVI GC  ++VSVS+
Sbjct: 851  PRWVNWIPLGVN---EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSN 907

Query: 419  LPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL-ILST 477
            LP LC  +I GCK+V  ES+ G  GS  S+     S        L   + K+E L I+ +
Sbjct: 908  LPMLCVLVIEGCKRVECESSVG-FGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDS 966

Query: 478  KEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEG 537
            ++ T +W+     L  +  L+ L I  CP L S  A            +L+ +++  C G
Sbjct: 967  EKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPA-------SGFPSMLKVIQIKSCSG 1019

Query: 538  LVK-LPQSSLSL---SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWM 593
            L   LP+ +L     + L  + +  C S+ S     LP+ LKK+EIS C  L+ + +   
Sbjct: 1020 LKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGE 1079

Query: 594  CDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTS 653
              ++SS    E     S T+         L+ L I  C ++ TLT       SSG+    
Sbjct: 1080 GSSSSSGMHDEDINNRSKTH---------LQYLDIKSCPSLTTLT-------SSGK--LP 1121

Query: 654  SLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNN 713
            + L HL +  CP L C+ S  +LPA L+ LE+ ++            SKL+ IAE L  N
Sbjct: 1122 ATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSI------------SKLQKIAERLHQN 1169

Query: 714  TSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCK 773
            TSLE I I  C  L++LP  LHNL +L++  I  C +  S P  GLP + L +L I NCK
Sbjct: 1170 TSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCK 1228

Query: 774  RLEALPKGLHNLKSLQELRIGKGV-ALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRG 832
             L+ALP G+ NL SLQ+L I   + +LPS +E GLPTNL + L   +++ +K M E   G
Sbjct: 1229 NLKALPNGMRNLTSLQKLDISHRLDSLPSPQE-GLPTNL-IELNMHDLKFYKPMFE--WG 1284

Query: 833  FHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSI 891
              + +SL +L+I     D+ S+P    ++ +G ++ LP SL+ L I  F NLE L+    
Sbjct: 1285 LQQPTSLIKLSIHGECLDVDSYP---GERENGVMMLLPNSLSILCISYFQNLECLSPKGF 1341

Query: 892  VDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPR 951
             +L +L  L + NC KL   P++GLP SL QL I  CPL+ + C  + GQ W  + HIP 
Sbjct: 1342 QNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPC 1401

Query: 952  VEISD 956
            V I +
Sbjct: 1402 VLIDN 1406

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|400131587\|emb\|CCH50986.1\| FB_MR5 [Malus x robusta]	Back alignment and taxonomy information

>gi\|225449649\|ref\|XP_002262753.1\| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356554923\|ref\|XP_003545790.1\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224059584\|ref\|XP_002299919.1\| cc-nbs-lrr resistance protein [Populus trichocarpa] gi\|222847177\|gb\|EEE84724.1\| cc-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225450023\|ref\|XP_002272823.1\| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi\|451798994\|gb\|AGF69195.1\| disease resistance protein At3g14460-like protein 2 [Vitis labrusca]	Back alignment and taxonomy information

>gi\|147766392\|emb\|CAN67818.1\| hypothetical protein VITISV_007674 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225450003\|ref\|XP_002272221.1\| PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359487416\|ref\|XP_002272889.2\| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359487225\|ref\|XP_002268551.2\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1005
TAIR\|locus:2091662		1424	AT3G14460 [Arabidopsis thalian	0.405	0.286	0.401	3.2e-89
TAIR\|locus:2091672		1054	AT3G14470 [Arabidopsis thalian	0.4	0.381	0.402	2.5e-77
UNIPROTKB\|O48647		1802	O48647 "XA1" [Oryza sativa (ta	0.600	0.335	0.244	2.1e-23
TAIR\|locus:2163426		1187	TAO1 "target of AVRB operation	0.301	0.255	0.257	1.2e-15
TAIR\|locus:2094498		1981	AT3G25510 [Arabidopsis thalian	0.342	0.173	0.262	3.4e-13
TAIR\|locus:2053405		1215	AT2G14080 [Arabidopsis thalian	0.357	0.295	0.248	3.1e-14
TAIR\|locus:2147992		1189	AT5G11250 [Arabidopsis thalian	0.290	0.245	0.272	1.7e-13
TAIR\|locus:2129236		1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.369	0.285	0.239	3.2e-08
TAIR\|locus:2117617		549	PIRL4 "plant intracellular ras	0.102	0.187	0.377	4e-12
TAIR\|locus:2205804		1556	AT1G27180 [Arabidopsis thalian	0.384	0.248	0.238	7.5e-08

TAIR\|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 688 (247.2 bits), Expect = 3.2e-89, Sum P(2) = 3.2e-89
 Identities = 171/426 (40%), Positives = 244/426 (57%)

Query:     1 MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
             MHDL++DLA+  +G+  F +E   + N  +  S   RH S+ R   D    F  +   + 
Sbjct:   487 MHDLMNDLAKAVSGDFCFRLE---DDNIPEIPST-TRHFSFSRSQCDASVAFRSICGAEF 542

Query:    61 LRTFLPVILSNSKPGY-LAPSMLPKLLK-LQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
             LRT LP     S     L   +L  LL  L  LR+ SL  Y+I  LP S+  L+ LRYL+
Sbjct:   543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLD 602

Query:   119 LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
             LS T+I+ LPE V  L NL +LLL +C  L  L   +  L+ L  L    T  L EMP G
Sbjct:   603 LSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMPPG 661

Query:   179 IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
             I +L  LQ L +FV+G+ SG+GL ELK L+ LRGTL IS L+NV    +A+DA L RK  
Sbjct:   662 IKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721

Query:   239 LKELWLRWTLYGS------YSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDS 292
             L  L L+WT+ GS      ++  A  +  VL ML+PH +L+ FCI+ Y G  FP WLGDS
Sbjct:   722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDS 781

Query:   293 SFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY-GDDSP--IPFPR 349
             SF  + ++   +C++C +LP VGQLPSLK+L++   + ++++G +F+ G+++   +PF  
Sbjct:   782 SFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841

Query:   350 LETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGC 409
             L+ L+F  +  W++ I      G+  FP L++L I RC  L+  FPE LP+   + I  C
Sbjct:   842 LQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDC 899

Query:   410 EELLVS 415
                 VS
Sbjct:   900 PLRAVS 905

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR\|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]	Back alignment and assigned GO terms

TAIR\|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010803001	SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (1418 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1005
PLN03210		1153	PLN03210, PLN03210, Resistant to P	1e-13
PLN03210		1153	PLN03210, PLN03210, Resistant to P	2e-09
PLN03210		1153	PLN03210, PLN03210, Resistant to P	5e-09
PLN03210		1153	PLN03210, PLN03210, Resistant to P	5e-06
PRK15386		426	PRK15386, PRK15386, type III secretion protein Gog	5e-05
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
pfam13855		60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

 Score = 75.3 bits (185), Expect = 1e-13
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 36/245 (14%)

Query: 536 EGLVKL--PQSSL--------SLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDAL 585
           E LVKL    S L        SL+ LR I++ G ++L   P++++ + L+ +++S C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 586 KSLPEAWMCDTNSSLEILEISGCDSLTYI-AGVQLPPSLKRLKICHCD----------NI 634
             LP +      + LE L++S C++L  +  G+ L  SL RL +  C           NI
Sbjct: 671 VELPSS--IQYLNKLEDLDMSRCENLEILPTGINL-KSLYRLNLSGCSRLKSFPDISTNI 727

Query: 635 RTLTVEEGIQCSSGRRYTSSL-LEHL-EIYSCPSLTCIFSKNELPAT-LESLEVGNLPPS 691
             L ++E    ++   + S+L LE+L E+  C   +    +   P T L ++    L PS
Sbjct: 728 SWLDLDE----TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM----LSPS 779

Query: 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNL 751
           L  L +     L  +   + N   LE + I  C NL+TLP+G+ NL  L+ + ++ C  L
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838

Query: 752 VSSPE 756
            + P+
Sbjct: 839 RTFPD 843

syringae 6; Provisional. Length = 1153

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|206026 pfam13855, LRR_8, Leucine rich repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1005
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.94
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.94
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.94
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.93
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.91
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.87
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.61
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.61
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.51
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.45
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.45
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.44
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.14
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.12
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG4341		483	consensus F-box protein containing LRR [General fu	98.89
KOG4341		483	consensus F-box protein containing LRR [General fu	98.86
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.74
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.73
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.64
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.59
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
PRK15386		426	type III secretion protein GogB; Provisional	98.53
PLN03150		623	hypothetical protein; Provisional	98.52
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.48
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.44
PLN03150		623	hypothetical protein; Provisional	98.4
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.38
PRK15386		426	type III secretion protein GogB; Provisional	98.34
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.13
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.12
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	97.93
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.76
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	97.75
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	97.74
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.54
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.51
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.46
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.42
KOG1947		482	consensus Leucine rich repeat proteins, some prote	97.3
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.29
KOG1947		482	consensus Leucine rich repeat proteins, some prote	97.26
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.25
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.9
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.49
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.43
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.37
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.28
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.05
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.99
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.91
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.59
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.31
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.82
KOG0473		326	consensus Leucine-rich repeat protein [Function un	94.61
KOG0473		326	consensus Leucine-rich repeat protein [Function un	94.6
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.9
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.58
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	92.07
smart00370		26	LRR Leucine-rich repeats, outliers.	92.07
KOG3864		221	consensus Uncharacterized conserved protein [Funct	91.98
KOG3864		221	consensus Uncharacterized conserved protein [Funct	91.94
smart00370		26	LRR Leucine-rich repeats, outliers.	87.2
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	87.2

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

Probab=100.00  E-value=3e-41  Score=423.98  Aligned_cols=227  Identities=14%  Similarity=0.090  Sum_probs=159.4

Q ss_pred             ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEE
Q 001849          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL  603 (1005)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  603 (1005)
                      ++|+.|++++|...+.+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....++..+  ..+++|+.|
T Consensus       380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L  457 (968)
T PLN00113        380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQML  457 (968)
T ss_pred             CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEE
Confidence            6788888888888788888888999999999999876655553 4567889999999987666666544  567888999


Q ss_pred             EEeCCCCCCcccCCCCCCCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhccc
Q 001849          604 EISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL  683 (1005)
Q Consensus       604 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~  683 (1005)
                      ++++|.....++.....++|+.|++++|...+.+|..                                           
T Consensus       458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-------------------------------------------  494 (968)
T PLN00113        458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-------------------------------------------  494 (968)
T ss_pred             ECcCceeeeecCcccccccceEEECcCCccCCccChh-------------------------------------------
Confidence            9988876655555444456666666666433322210                                           


Q ss_pred             ccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCccc
Q 001849          684 EVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAK  763 (1005)
Q Consensus       684 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  763 (1005)
                       +.. .++|++|++++|...+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|+..+.+|..+..+++
T Consensus       495 -~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        495 -LGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             -hhh-hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence             011 146777777777777777777777777888888877777777777777777888888877766677777767777


Q ss_pred             ccccccccccccccCccccCCCcccceeecccCCCC
Q 001849          764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVAL  799 (1005)
Q Consensus       764 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l  799 (1005)
                      |+.|++++|+..+.+|.. +.+..+....+.+|+.+
T Consensus       573 L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        573 LVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL  607 (968)
T ss_pred             cCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence            777788877777777653 22233334444454433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1005
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		8e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Iteration: 1

Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 32/214 (14%) Query: 562 LVSFPEVALPSKLKKIEISSCDA--LKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQL 619 L FP+ A +L ++ + DA L LP+ + LE L ++ A + Sbjct: 93 LPQFPDQAF--RLSHLQHXTIDAAGLXELPDT--XQQFAGLETLTLARNPLRALPASIAS 148 Query: 620 PPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSK-NELPA 678 L+ L I C + L +SG EH + + SL ++ LPA Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASG--------EHQGLVNLQSLRLEWTGIRSLPA 200 Query: 679 T------LESLEVGNLP-----------PSLKLLLVWGCSKLESIAEMLDNNTSLEKINI 721 + L+SL++ N P P L+ L + GC+ L + + L+++ + Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 Query: 722 SGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSP 755 C NL TLP +H L QL+++ + C NL P Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

PyMOL of 4fcg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1005
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	8e-17
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-06
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-13
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-12
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	7e-04
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	8e-04
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-04
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	2e-06
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	8e-05
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-04
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	8e-06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	5e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

 Score = 89.6 bits (223), Expect = 2e-19
 Identities = 28/109 (25%), Positives = 45/109 (41%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
               +   L +L+   L    I  LP S+ +L+ L+ L +  + +  L  ++  L  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           L L  C  L       G    L  L   +  +L  +P+ I RLT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

PyMOL of 4fcg

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1005
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1dcea3		124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1a9na_		162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 12/230 (5%)

Query: 104 LPDSVGDL--RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCD-RLEKLCADMGNLVK 160
            PD  G L  + +       + +          + +  + L +    +  L   +    K
Sbjct: 13  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 161 LHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLE 220
           L +L     +  + +   + + + L  L        S   L+          + C    E
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-------LLSSCSRLDE 125

Query: 221 NVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGY 280
                      +  +            L  S  R+   +  +  +++   NL    +   
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 281 GGMKFPTWLGDSSFSKLVTLKFKNCDMCT--ALPSVGQLPSLKHLTVRGM 328
             +K   +      + L  L    C       L  +G++P+LK L V G+
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1005
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.86
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.85
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.84
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.76
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.7
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.64
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.54
d2ifga3		156	High affinity nerve growth factor receptor, N-term	99.52
d2ifga3		156	High affinity nerve growth factor receptor, N-term	99.51
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.84
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.71
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.7e-31  Score=161.56  Aligned_cols=85  Identities=19%  Similarity=0.352  Sum_probs=64.3

Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEEC
Q ss_conf             69974399922899843691114989785997438877436833340135535122355311000031005378988973
Q 001849           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (1005)
Q Consensus        87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L  166 (1005)
                      .+.+|++|+++++.|+.+ +.+..+++|++|++++|.++.+|. ++++++|++|++++|. +..++ .++.+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEEC
T ss_pred             HHCCCCEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCC
T ss_conf             957878998999898776-242458999989681881798863-3477110103013433-32222-1112334333443


Q ss_pred             CCCCCCCCCC
Q ss_conf             5886654332
Q 001849          167 SNTKSLEEMP  176 (1005)
Q Consensus       167 ~~n~~~~~lp  176 (1005)
                      +++. ...++
T Consensus       118 ~~~~-~~~~~  126 (384)
T d2omza2         118 FNNQ-ITDID  126 (384)
T ss_dssp             CSSC-CCCCG
T ss_pred             CCCC-CCCCC
T ss_conf             3222-22222

PyMOL of d2omza2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure