Citrus Sinensis ID: 001852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.956 | 0.902 | 0.334 | 1e-174 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.957 | 0.965 | 0.360 | 1e-167 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.920 | 0.933 | 0.345 | 1e-162 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.856 | 0.895 | 0.354 | 1e-158 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.746 | 0.881 | 0.371 | 1e-150 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.851 | 0.969 | 0.345 | 1e-147 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.746 | 0.925 | 0.376 | 1e-145 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.800 | 0.903 | 0.357 | 1e-144 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.728 | 0.888 | 0.372 | 1e-144 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.815 | 0.943 | 0.334 | 1e-140 |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 612 bits (1577), Expect = e-174, Method: Compositional matrix adjust.
Identities = 322/962 (33%), Positives = 534/962 (55%), Gaps = 2/962 (0%)
Query: 44 GKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVR 103
G+ LH+ +K + + + L + Y G L A VFD+M ++ +WN + L
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163
Query: 104 LGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVF 163
L E G F M+S V P S +L AC Q+H + GL
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTV 223
Query: 164 VGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREG 223
V L+ Y G ++ ARRVF+ + +++ SW +++ N E + L+ M G
Sbjct: 224 VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG 283
Query: 224 VCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEAR 283
+ F++V+++C E+ +G G V+K GF V N+L+S++ + G++ A
Sbjct: 284 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 343
Query: 284 CIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVD 343
IF +M RD +++N++I+ S G +++++ F M G E +S T ++L+ AC +
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403
Query: 344 NLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVA 403
L G+ +H KL SN + LL +Y++ E A F E + V WN ++
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463
Query: 404 SHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHD 463
++ + ++ +IF M ++ + N T+ S L C G + G+ IH+ +I
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 523
Query: 464 NLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMR 523
N V + L+ MYAK G + A + +D V+W +I G+++ DKAL +++M
Sbjct: 524 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 524 EEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL 583
+ G + + N + AC L G IH ++GF S QN+L+T+Y++CG +
Sbjct: 584 DRGIRSDEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 584 NSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643
S FE +++ WNA+++ G EE L++ V+M G+ + F+ + AA
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Query: 644 AKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWN 703
++ A +++G Q+H + TK G+D + V NA + MY KCG I D + + + +SWN
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762
Query: 704 ILISVFARHGYFQKAIETFDEML-KYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTE 762
+I+ +++HG+ +A+++FD+M+ V+P+HVT V +LSAC+H GLVDKG+ Y+ +M +E
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822
Query: 763 FGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKK 822
+G+ EH VC++D+L R+G L+ A+ FI +MP+ P+ LVWR+LL++ +H N+E+ +
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882
Query: 823 AAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVN 882
AA HL EL+P D ++YVL SN+ A + +WD + R++M +KK+P SW++ K+ ++
Sbjct: 883 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942
Query: 883 SFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLAL 942
SF +GD +HP + I+ ++L K E GYV D L + EQK+ ++ HSE+LA+
Sbjct: 943 SFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAI 1002
Query: 943 AFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLD 1002
+FGL++ P I + KNLRVC+DCH+ KF+SK+ R II+RD YRFHHF GG CSC D
Sbjct: 1003 SFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD 1062
Query: 1003 YW 1004
YW
Sbjct: 1063 YW 1064
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust.
Identities = 358/992 (36%), Positives = 560/992 (56%), Gaps = 31/992 (3%)
Query: 36 SQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWN 95
S + + + H+ K + V+ N LIN Y + G AR VFD+M +N SW
Sbjct: 12 SCVGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWA 71
Query: 96 NTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFM-VSEGIQVHGFSV 154
+SG R G ++E++ F +M+ G+ S+L AC G + + G Q+HG
Sbjct: 72 CIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMF 131
Query: 155 KVGLLCDVFVGTSLLHFY-GTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVV 213
K+ D V L+ Y G + A F ++ V+N VSW S++ Y G
Sbjct: 132 KLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAF 191
Query: 214 DLYRYMRREGVCCNENTFAAVITS-CGLTENDL-LGYLFLGHVIKFGFHYTVPVANSLIS 271
++ M+ +G E TF +++T+ C LTE D+ L + + K G + V + L+S
Sbjct: 192 RIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVS 251
Query: 272 MFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTT 331
F GS+ AR +F+ M R+ ++ N ++ +++ K F M + +++ +
Sbjct: 252 AFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPES 310
Query: 332 FSTLLSACGSVD-----NLKWGRGIHGLAVKLAL-NSNVWVCNTLLAMYSEAGRSEDAKF 385
+ LLS+ LK GR +HG + L + V + N L+ MY++ G DA+
Sbjct: 311 YVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARR 370
Query: 386 VFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGF 445
VF M+++DSVSWNS++ Q+ +I+A++ + +M + L T S+L++C+ +
Sbjct: 371 VFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKW 430
Query: 446 VVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGG 505
G+ IH + +G+ N+ V NAL+++YA++G ++E +++F MP+ D V+WN++IG
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 490
Query: 506 --HSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNP--GDL--LIHGMPIHTHIV 559
SE+ P+ A+ + + G +N ITF++VL A + G+L IHG+ + +I
Sbjct: 491 LARSERSLPE-AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549
Query: 560 LTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHGQGEEVL 618
+N+LI Y KCG+++ IF +AE+ ++VTWN+MI+ + + L
Sbjct: 550 -----DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKAL 604
Query: 619 KLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678
L+ M TG D F + L+A A +A LE G ++H + + + D V +A +DMY
Sbjct: 605 DLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMY 664
Query: 679 GKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEML--KYVKPDHVTF 736
KCG + LR R SWN +IS +ARHG ++A++ F+ M PDHVTF
Sbjct: 665 SKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTF 724
Query: 737 VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP 796
V +LSAC+H GL+++G +++ +M+ +G+ IEH C+ D+LGR+G L + E FI KMP
Sbjct: 725 VGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMP 784
Query: 797 VTPNDLVWRSLL-ASSKIHG-NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854
+ PN L+WR++L A + +G EL KKAAE LF+L+P + +YVL N+ AA GRW+D+
Sbjct: 785 MKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDL 844
Query: 855 ENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYV 914
R++M +KK+ SWV KDGV+ F GD SHPD + IY KL+EL + +++AGYV
Sbjct: 845 VKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYV 904
Query: 915 PDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGST--IRIFKNLRVCSDCHSVYK 972
P T FAL D ++E KE L HSE+LA+AF ++ + ST IRI KNLRVC DCHS +K
Sbjct: 905 PQTGFALYDLEQENKEEILSYHSEKLAVAF-VLAAQRSSTLPIRIMKNLRVCGDCHSAFK 963
Query: 973 FISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
+ISKI R+IILRD RFHHF G CSC D+W
Sbjct: 964 YISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 336/972 (34%), Positives = 531/972 (54%), Gaps = 48/972 (4%)
Query: 43 VGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLV 102
+GK HA + + F N LI+MY K G L YAR VFDKM D++ SWN+ ++
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 103 R-----LGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFM-VSEGIQVHGFSVKV 156
+ + Q++ F + V + + +S +L C SG++ SE HG++ K+
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF--HGYACKI 174
Query: 157 GLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLY 216
GL D FV +L++ Y +G + + + +FEEMP R+VV W ++ AYL+ G E +DL
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 217 RYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNF 276
G+ NE T + G ++D G V F AN GN
Sbjct: 235 SAFHSSGLNPNEITLRLLARISG-DDSDA------GQVKSF--------AN------GN- 272
Query: 277 GSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLL 336
D+ V + I N +S Y HSG LKCF M E + TF +L
Sbjct: 273 ----------DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
Query: 337 SACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSV 396
+ VD+L G+ +H +A+KL L+ + V N+L+ MY + + A+ VF MSERD +
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382
Query: 397 SWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSAL-AACSDPGFVVQGKIIHAL 455
SWNS++A Q+ ++A+ +F +L+ + T TS L AA S P + K +H
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVH 442
Query: 456 VITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKA 515
I + + V AL+ Y+++ M EA+ +F D V WNA++ G+++ + K
Sbjct: 443 AIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKT 501
Query: 516 LKAYKRMREEGTPMNYITFANVLGACLNPGDLLI--HGMPIHTHIVLTGFESHKYVQNSL 573
LK + M ++G + T A V C G L G +H + + +G++ +V + +
Sbjct: 502 LKLFALMHKQGERSDDFTLATVFKTC---GFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 558
Query: 574 ITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR 633
+ MY KCGD++++ + F+ + + V W MI+ +G+ E + +MR GV D
Sbjct: 559 LDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDE 618
Query: 634 FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ 693
F+++ A++ L LE+G Q+H A KL DPFV + +DMY KCG I D + +
Sbjct: 619 FTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKR 678
Query: 694 PVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKG 752
+WN ++ A+HG ++ ++ F +M +KPD VTF+ +LSAC+H GLV +
Sbjct: 679 IEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEA 738
Query: 753 LQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSK 812
++ +M ++G+ IEH C+ D LGR+G + +AE I M + + ++R+LLA+ +
Sbjct: 739 YKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACR 798
Query: 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPAC 872
+ G+ E K+ A L EL+P D S+YVL SN+ AA +WD+++ R M +K+KK P
Sbjct: 799 VQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGF 858
Query: 873 SWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHN 932
SW++ K+ ++ F + D S+ TE IY K++++ + IK+ GYVP+T F L D +EE+KE
Sbjct: 859 SWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERA 918
Query: 933 LWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHH 992
L+ HSE+LA+AFGL+++P + IR+ KNLRVC DCH+ K+I+K+ R I+LRD RFH
Sbjct: 919 LYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHR 978
Query: 993 FYGGECSCLDYW 1004
F G CSC DYW
Sbjct: 979 FKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 307/867 (35%), Positives = 499/867 (57%), Gaps = 7/867 (0%)
Query: 143 VSEGIQVHGFSVKVGLLCDV-FVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMV 201
VS+G Q+H K ++ F+ L+ YG G ++ A +VF+EMP R +W +++
Sbjct: 96 VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIG 155
Query: 202 AYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHY 261
AY+ NG P + LY MR EGV ++F A++ +C + G ++K G+H
Sbjct: 156 AYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHS 215
Query: 262 TVPVANSLISMFGNFGSVKEARCIFDSMHVR-DTISWNSMISVYSHSGLCDQSLKCFHWM 320
T + N+L+SM+ + AR +FD + D + WNS++S YS SG ++L+ F M
Sbjct: 216 TGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM 275
Query: 321 RHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSN-VWVCNTLLAMYSEAGR 379
G NS T + L+AC K G+ IH +K + +S+ ++VCN L+AMY+ G+
Sbjct: 276 HMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGK 335
Query: 380 SEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAA 439
A+ + ++M+ D V+WNSL+ +VQ+ Y +AL+ FS+M+ + V+ TS +AA
Sbjct: 336 MPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Query: 440 CSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTW 499
++ G +HA VI G NL VGN L+ MY+K + + F M +D ++W
Sbjct: 396 SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISW 455
Query: 500 NALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIV 559
+I G+++ + +AL+ ++ + ++ ++ + ++L A +LI IH HI+
Sbjct: 456 TTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLI-VKEIHCHIL 514
Query: 560 LTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLK 619
G +QN L+ +Y KC ++ + +FE + K+ V+W +MI+++AL+G E ++
Sbjct: 515 RKGLLD-TVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVE 573
Query: 620 LLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679
L +M TG+ D +L L+AAA L+ L +G ++H + GF L+ + A +DMY
Sbjct: 574 LFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYA 633
Query: 680 KCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEML-KYVKPDHVTFVS 738
CG++ + + + L + +I+ + HG + A+E FD+M + V PDH++F++
Sbjct: 634 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 693
Query: 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVT 798
LL AC+H GL+D+G + M E+ + EH VC++D+LGR+ + EA F+ M
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753
Query: 799 PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858
P VW +LLA+ + H E+ + AA+ L EL+P + + VL SNV A GRW+DVE VR
Sbjct: 754 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 813
Query: 859 RQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEEL-KKMIKEAGYVPDT 917
+M + ++K P CSW++ V+ F D SHP+++ IY KL E+ +K+ +E GYV DT
Sbjct: 814 AKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADT 873
Query: 918 SFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKI 977
F L + DE +K L HSER+A+A+GL+ +P+ + +RI KNLRVC DCH+ K +SK+
Sbjct: 874 KFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKL 933
Query: 978 VRRRIILRDPYRFHHFYGGECSCLDYW 1004
RR I++RD RFHHF G CSC D W
Sbjct: 934 FRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/802 (37%), Positives = 445/802 (55%), Gaps = 53/802 (6%)
Query: 254 VIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDT--ISWNSMISVYSHSGLCD 311
++ FG T+ + + LIS + + G + A + D WNS+I Y +G +
Sbjct: 51 LLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCAN 109
Query: 312 QSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLL 371
+ L F M + ++ TF + ACG + +++ G H L++ SNV+V N L+
Sbjct: 110 KCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALV 169
Query: 372 AMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQK--QRLVN 429
AMYS DA+ VF EMS D VSWNS++ S+ + K AL++FS M + R N
Sbjct: 170 AMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDN 229
Query: 430 YVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFR 489
+T + L C+ G GK +H +T + N+ VGN LV MYAK GMM EA VF
Sbjct: 230 -ITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288
Query: 490 IMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFA-------------N 536
M +D V+WNA++ G+S+ + A++ +++M+EE M+ +T++
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYE 348
Query: 537 VLGAC-------LNPGDL--------------LIHGMPIHTHIVL-------TGFESHKY 568
LG C + P ++ L+HG IH + + G
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 569 VQNSLITMYAKCGDLNSSNYIFEGLA--EKNSVTWNAMIAANALHGQGEEVLKLLVKM-- 624
V N LI MYAKC ++++ +F+ L+ E++ VTW MI + HG + L+LL +M
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 625 RHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDP-FVTNAAMDMYGKCGE 683
+ F++S L A A LA L G Q+H A + + P FV+N +DMY KCG
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528
Query: 684 IGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSA 742
I D + + + ++W L++ + HGY ++A+ FDEM + K D VT + +L A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588
Query: 743 CNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDL 802
C+H G++D+G++Y+N M T FGV G EH C++DLLGR+GRL A I +MP+ P +
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648
Query: 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862
VW + L+ +IHG VEL + AAE + EL + D SY L SN+ A GRW DV +R M
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708
Query: 863 WNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQ 922
+KK+P CSWV+ G +F +GD +HP + IY L + + IK+ GYVP+T FAL
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH 768
Query: 923 DTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRI 982
D D+E+K+ L+ HSE+LALA+G++ +P+G+ IRI KNLRVC DCH+ + ++S+I+ I
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDI 828
Query: 983 ILRDPYRFHHFYGGECSCLDYW 1004
ILRD RFHHF G CSC YW
Sbjct: 829 ILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/860 (34%), Positives = 483/860 (56%), Gaps = 5/860 (0%)
Query: 148 QVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM-PVRNVVSWTSLMVAYLDN 206
++H + +GL F L+ Y + + VF + P +NV W S++ A+ N
Sbjct: 25 RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKN 84
Query: 207 GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVA 266
G E ++ Y +R V ++ TF +VI +C + +G L ++ GF + V
Sbjct: 85 GLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVG 144
Query: 267 NSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQE 326
N+L+ M+ G + AR +FD M VRD +SWNS+IS YS G +++L+ +H +++
Sbjct: 145 NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIV 204
Query: 327 INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFV 386
+S T S++L A G++ +K G+G+HG A+K +NS V V N L+AMY + R DA+ V
Sbjct: 205 PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRV 264
Query: 387 FQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFV 446
F EM RDSVS+N+++ +++ E +++++F L + + + +T +S L AC +
Sbjct: 265 FDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFK-PDLLTVSSVLRACGHLRDL 323
Query: 447 VQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGH 506
K I+ ++ G V N L+ +YAK G M A+ VF M +DTV+WN++I G+
Sbjct: 324 SLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Query: 507 SEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESH 566
+ + +A+K +K M ++IT+ ++ DL G +H++ + +G
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKF-GKGLHSNGIKSGICID 442
Query: 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRH 626
V N+LI MYAKCG++ S IF + ++VTWN +I+A G L++ +MR
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRK 502
Query: 627 TGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGD 686
+ V D + L A LA G ++H + G++ + + NA ++MY KCG + +
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562
Query: 687 VLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNH 745
R+ + R ++W +I + +G +KA+ETF +M K + PD V F++++ AC+H
Sbjct: 563 SSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSH 622
Query: 746 GGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWR 805
GLVD+GL + M T + + IEH C++DLL RS ++++AE FI MP+ P+ +W
Sbjct: 623 SGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWA 682
Query: 806 SLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNK 865
S+L + + G++E A++ + + EL+P D +L SN AA +WD V +R+ +
Sbjct: 683 SVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKH 742
Query: 866 IKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTD 925
I K P SW++ V+ F GD S P +E IY LE L ++ + GY+PD Q+ +
Sbjct: 743 ITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLE 802
Query: 926 EEQKEHNL-WNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIIL 984
EE+++ L HSERLA+AFGL+N+ G+ +++ KNLRVC DCH V K ISKIV R I++
Sbjct: 803 EEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILV 862
Query: 985 RDPYRFHHFYGGECSCLDYW 1004
RD RFH F G CSC D W
Sbjct: 863 RDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/752 (37%), Positives = 435/752 (57%), Gaps = 3/752 (0%)
Query: 254 VIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQS 313
V K G + L+S+F +GSV EA +F+ + + + +++M+ ++ D++
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 314 LKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAM 373
L+ F MR+ E F+ LL CG L+ G+ IHGL VK + +++ L M
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 374 YSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTF 433
Y++ + +A+ VF M ERD VSWN++VA + Q+ AL++ +M ++ +++T
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITI 239
Query: 434 TSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK 493
S L A S + GK IH + G + + ALV MYAK G + A+Q+F M +
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE 299
Query: 494 RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMP 553
R+ V+WN++I + + E P +A+ +++M +EG ++ L AC + GDL G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLE-RGRF 358
Query: 554 IHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQ 613
IH V G + + V NSLI+MY KC +++++ +F L + V+WNAMI A +G+
Sbjct: 359 IHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418
Query: 614 GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNA 673
+ L +MR V D F+ + A A+L++ +HG+ + D + FVT A
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478
Query: 674 AMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK-YVKPD 732
+DMY KCG I I +R +WN +I + HG+ + A+E F+EM K +KP+
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538
Query: 733 HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792
VTF+S++SAC+H GLV+ GL+ + M + + ++H ++DLLGR+GRL EA FI
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598
Query: 793 NKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWD 852
+MPV P V+ ++L + +IH NV A+KAAE LFEL+P D +VL +N+ A W+
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658
Query: 853 DVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAG 912
V VR M ++K P CS V+ K+ V+SF G +HPD++ IYA LE+L IKEAG
Sbjct: 659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718
Query: 913 YVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYK 972
YVPDT+ L + + KE L HSE+LA++FGL+N+ G+TI + KNLRVC+DCH+ K
Sbjct: 719 YVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATK 777
Query: 973 FISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
+IS + R I++RD RFHHF G CSC DYW
Sbjct: 778 YISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 297/831 (35%), Positives = 465/831 (55%), Gaps = 27/831 (3%)
Query: 196 WTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVI 255
W L+ + + + E V Y M G+ + F A++ + ++ LG HV
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 256 KFGFHY-TVPVANSLISMF---GNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCD 311
KFG+ +V VAN+L++++ G+FG+V + +FD + R+ +SWNS+IS +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYK---VFDRISERNQVSWNSLISSLCSFEKWE 181
Query: 312 QSLKCFHWMRHVGQEINSTTFSTLLSACGSV---DNLKWGRGIHGLAVKLALNSNVWVCN 368
+L+ F M E +S T ++++AC ++ + L G+ +H ++ N ++ N
Sbjct: 182 MALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIIN 240
Query: 369 TLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV 428
TL+AMY + G+ +K + RD V+WN++++S Q+E+ ++AL+ M+ +
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 429 NYVTFTSALAACSDPGFVVQGKIIHALVITMG-LHDNLIVGNALVSMYAKSGMMSEAKQV 487
+ T +S L ACS + GK +HA + G L +N VG+ALV MY + ++V
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 488 FRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREE-GTPMNYITFANVLGACLNPGD 546
F M R WNA+I G+S+ E +AL + M E G N T A V+ AC+ G
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG- 419
Query: 547 LLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIA 606
IH +V G + ++VQN+L+ MY++ G ++ + IF + +++ VTWN MI
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479
Query: 607 ANALHGQGEEVLKLLVKM----RHTGVYFDRFSLSEG-------LAAAAKLAVLEEGHQL 655
E+ L LL KM R R SL L + A L+ L +G ++
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
Query: 656 HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYF 715
H A K D V +A +DMY KCG + ++ Q + ++WN++I + HG
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 716 QKAIETFDEML-KYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC 774
Q+AI+ M+ + VKP+ VTF+S+ +AC+H G+VD+GL+ + M ++GV +H C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 775 IIDLLGRSGRLAEAETFINKMPVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPS 833
++DLLGR+GR+ EA +N MP N W SLL +S+IH N+E+ + AA++L +L+P+
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719
Query: 834 DDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPD 893
S YVL +N+ ++ G WD VRR M ++K+P CSW++ D V+ F GD SHP
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779
Query: 894 TEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGS 953
+E + LE L + +++ GYVPDTS L + +E++KE L HSE+LA+AFG++N+ G+
Sbjct: 780 SEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGT 839
Query: 954 TIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
IR+ KNLRVC+DCH KFISKIV R IILRD RFH F G CSC DYW
Sbjct: 840 IIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 279/749 (37%), Positives = 433/749 (57%), Gaps = 18/749 (2%)
Query: 263 VPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFH-WMR 321
V ++ L++++ G+V AR FD + RD +WN MIS Y +G + ++CF +M
Sbjct: 86 VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145
Query: 322 HVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSE 381
G + TF ++L AC +V + G IH LA+K +V+V +L+ +YS
Sbjct: 146 SSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202
Query: 382 DAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACS 441
+A+ +F EM RD SWN++++ + Q +AL + SN L R ++ VT S L+AC+
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-SNGL---RAMDSVTVVSLLSACT 258
Query: 442 DPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNA 501
+ G +G IH+ I GL L V N L+ +YA+ G + + ++VF M RD ++WN+
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318
Query: 502 LIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLL----IHGMPIHTH 557
+I + E+P +A+ ++ MR + +T ++ GD+ + G +
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378
Query: 558 IVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEV 617
L + N+++ MYAK G ++S+ +F L + ++WN +I+ A +G E
Sbjct: 379 WFLEDIT----IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEA 434
Query: 618 LKLLVKMRHTG-VYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMD 676
+++ M G + ++ + L A ++ L +G +LHG K G LD FV + D
Sbjct: 435 IEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLAD 494
Query: 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEML-KYVKPDHVT 735
MYGKCG + D L + Q + WN LI+ HG+ +KA+ F EML + VKPDH+T
Sbjct: 495 MYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHIT 554
Query: 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795
FV+LLSAC+H GLVD+G + M T++G+ ++H C++D+ GR+G+L A FI M
Sbjct: 555 FVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM 614
Query: 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855
+ P+ +W +LL++ ++HGNV+L K A+EHLFE++P +VL SN+ A+ G+W+ V+
Sbjct: 615 SLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVD 674
Query: 856 NVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVP 915
+R ++K P S ++ + V F G+ +HP E +Y +L L+ +K GYVP
Sbjct: 675 EIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVP 734
Query: 916 DTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFIS 975
D F LQD ++++KEH L +HSERLA+AF LI +P +TIRIFKNLRVC DCHSV KFIS
Sbjct: 735 DHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFIS 794
Query: 976 KIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
KI R II+RD RFHHF G CSC DYW
Sbjct: 795 KITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 277/828 (33%), Positives = 453/828 (54%), Gaps = 9/828 (1%)
Query: 181 ARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGL 240
A +F++ P R+ S+ SL+ + +G E L+ + R G+ + + F++V+
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 241 TENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSM 300
++L G IKFGF V V SL+ + + K+ R +FD M R+ ++W ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 301 ISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLAL 360
IS Y+ + + D+ L F M++ G + NS TF+ L G +H + VK L
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225
Query: 361 NSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSN 420
+ + V N+L+ +Y + G A+ +F + + V+WNS+++ + + ++AL +F +
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285
Query: 421 MLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGM 480
M ++ +F S + C++ + + +H V+ G + + AL+ Y+K
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345
Query: 481 MSEAKQVFR-IMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLG 539
M +A ++F+ I + V+W A+I G + + ++A+ + M+ +G N T++ +L
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405
Query: 540 ACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSV 599
A P +I +H +V T +E V +L+ Y K G + + +F G+ +K+ V
Sbjct: 406 AL--P---VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIV 460
Query: 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAAKLAVLEEGHQLHGL 658
W+AM+A A G+ E +K+ ++ G+ + F+ S L AA A + +G Q HG
Sbjct: 461 AWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGF 520
Query: 659 ATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKA 718
A K D V++A + MY K G I + + ++ +SWN +IS +A+HG KA
Sbjct: 521 AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 580
Query: 719 IETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777
++ F EM K VK D VTF+ + +AC H GLV++G +Y++ M + + EH C++D
Sbjct: 581 LDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVD 640
Query: 778 LLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837
L R+G+L +A I MP +WR++LA+ ++H EL + AAE + + P D ++
Sbjct: 641 LYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA 700
Query: 838 YVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHI 897
YVL SN+ A +G W + VR+ M +KK+P SW++ K+ SF GD SHP + I
Sbjct: 701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQI 760
Query: 898 YAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRI 957
Y KLE+L +K+ GY PDTS+ LQD D+E KE L HSERLA+AFGLI +P+GS + I
Sbjct: 761 YMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLI 820
Query: 958 FKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYG-GECSCLDYW 1004
KNLRVC DCH V K I+KI R I++RD RFHHF G CSC D+W
Sbjct: 821 IKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | ||||||
| 359494657 | 1724 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.573 | 0.671 | 0.0 | |
| 147801010 | 1166 | hypothetical protein VITISV_016374 [Viti | 0.982 | 0.845 | 0.670 | 0.0 | |
| 297850056 | 1038 | hypothetical protein ARALYDRAFT_889039 [ | 0.984 | 0.951 | 0.619 | 0.0 | |
| 224096620 | 908 | predicted protein [Populus trichocarpa] | 0.903 | 0.998 | 0.687 | 0.0 | |
| 357457743 | 1125 | Pentatricopeptide repeat-containing prot | 0.980 | 0.874 | 0.604 | 0.0 | |
| 4966374 | 1027 | >F3O9.28 [Arabidopsis thaliana] | 0.955 | 0.933 | 0.608 | 0.0 | |
| 356543252 | 934 | PREDICTED: pentatricopeptide repeat-cont | 0.929 | 0.998 | 0.627 | 0.0 | |
| 449464496 | 938 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.997 | 0.613 | 0.0 | |
| 238478502 | 937 | PPR repeat domain-containing protein [Ar | 0.932 | 0.998 | 0.620 | 0.0 | |
| 334182623 | 928 | PPR repeat domain-containing protein [Ar | 0.907 | 0.981 | 0.620 | 0.0 |
| >gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1392 bits (3602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/995 (67%), Positives = 800/995 (80%), Gaps = 6/995 (0%)
Query: 16 LYFLLNHPDPEISC-----FYQKGFSQITNESVGKALHALCIKGLVSFSVFYNNTLINMY 70
++ H D I C F KGFS+IT++ GKALHA CI G V+ +F NTLINMY
Sbjct: 730 VFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMY 789
Query: 71 FKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLIS 130
KFG + +ARYVFD+M +N+ASW+ +SG VR+GLY+E+VG F +M GV P G +++
Sbjct: 790 SKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVA 849
Query: 131 SLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV 190
SL++AC SG+M EG QVHGF VK G+L DV+VGT+L+HFYG+ G + A+++FEEMP
Sbjct: 850 SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPD 909
Query: 191 RNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLF 250
NVVSWTSLMV Y D+G+P EV+++Y+ MR+EGV N+NTFA V +SCGL E+ +LGY
Sbjct: 910 HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 969
Query: 251 LGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLC 310
LGH+I++GF +V VANSLISMF +F SV+EA +FD M+ D ISWN+MIS Y+H GLC
Sbjct: 970 LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 1029
Query: 311 DQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTL 370
+SL+CFHWMRH+ E NSTT S+LLS C SVDNLKWGRGIHGL VKL L+SNV +CNTL
Sbjct: 1030 RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 1089
Query: 371 LAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY 430
L +YSEAGRSEDA+ VFQ M+ERD +SWNS++A +VQD K +D LKI + +LQ +++N+
Sbjct: 1090 LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNH 1149
Query: 431 VTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRI 490
VTF SALAACS+P +++ KI+HAL+I G HD LIVGNALV+MY K GMM EAK+V +
Sbjct: 1150 VTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 1209
Query: 491 MPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIH 550
MP+ D VTWNALIGGH+E EEP++A+KAYK +RE+G P NYIT +VLGAC P DLL H
Sbjct: 1210 MPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKH 1269
Query: 551 GMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANAL 610
GMPIH HIVLTGFES YV+NSLITMYAKCGDLNSSNYIF+GL K+ +TWNAM+AANA
Sbjct: 1270 GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 1329
Query: 611 HGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFV 670
HG GEE LK+ +MR+ GV D+FS S GLAA A LAVLEEG QLHGL KLGF+ D V
Sbjct: 1330 HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 1389
Query: 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-V 729
TNAAMDMYGKCGE+ DVL++ PQP++R RLSWNILIS FARHG FQKA ETF EMLK
Sbjct: 1390 TNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 1449
Query: 730 KPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789
KPDHVTFVSLLSACNHGGLVD+GL YY++MT EFGV GIEHCVCIIDLLGRSGRL+ AE
Sbjct: 1450 KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE 1509
Query: 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATG 849
FI +MPV PNDL WRSLLA+ +IHGN+ELA+K AEHL ELDPSDDS+YVLYSNVCA +G
Sbjct: 1510 GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSG 1569
Query: 850 RWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIK 909
+W+DVEN+R++MG N IKK+PACSWVK KD V+SFGMG+ HP I AKL EL KM K
Sbjct: 1570 KWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTK 1629
Query: 910 EAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHS 969
EAGYVPDTSFAL D DEEQKE+NLWNHSERLALAFGLIN+PE ST+RIFKNLRVC DCHS
Sbjct: 1630 EAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHS 1689
Query: 970 VYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
VYKF+S IV R+I+LRDPYRFHHF GG+CSC DYW
Sbjct: 1690 VYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1382 bits (3578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/992 (67%), Positives = 798/992 (80%), Gaps = 6/992 (0%)
Query: 16 LYFLLNHPDPEISC-----FYQKGFSQITNESVGKALHALCIKGLVSFSVFYNNTLINMY 70
++ H D I C F KGFS+IT++ GKALHA CI G V+ +F NTLINMY
Sbjct: 80 VFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMY 139
Query: 71 FKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLIS 130
KFG + +ARYVFD+M +N+ASW+ +SG VR+GLY+E+VG F +M GV P G +++
Sbjct: 140 SKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVA 199
Query: 131 SLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV 190
SL++AC SG+M EG QVHGF VK G+L DV+VGT+L+HFYG+ G + A+++FEEMP
Sbjct: 200 SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPD 259
Query: 191 RNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLF 250
NVVSWTSLMV Y D+G+P EV+++Y+ MR+EGV N+NTFA V +SCGL E+ +LGY
Sbjct: 260 HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 319
Query: 251 LGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLC 310
LGH+I++GF +V VANSLISMF +F SV+EA +FD M+ D ISWN+MIS Y+H GLC
Sbjct: 320 LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 379
Query: 311 DQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTL 370
+SL+CFHWMRH+ E NSTT S+LLS C SVDNLKWGRGIHGL VKL L+SNV +CNTL
Sbjct: 380 RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 439
Query: 371 LAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY 430
L +YSEAGRSEDA+ VFQ M+ERD +SWNS++A +VQD K +D LKI + +LQ +++N+
Sbjct: 440 LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNH 499
Query: 431 VTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRI 490
VTF SALAACS+P +++ KI+HAL+I G HD LIVGNALV+MY K GMM EAK+V +
Sbjct: 500 VTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 559
Query: 491 MPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIH 550
MP+ D VTWNALIGGH+E EEP++A+KAYK +RE+G P NYIT +VLGAC P DLL H
Sbjct: 560 MPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKH 619
Query: 551 GMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANAL 610
GMPIH HIVLTGFES YV+NSLITMYAKCGDLNSSNYIF+GL K+ +TWNAM+AANA
Sbjct: 620 GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 679
Query: 611 HGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFV 670
HG GEE LK+ +MR+ GV D+FS S GLAA A LAVLEEG QLHGL KLGF+ D V
Sbjct: 680 HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 739
Query: 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-V 729
TNAAMDMYGKCGE+ DVL++ PQP++R RLSWNILIS FARHG FQKA ETF EMLK
Sbjct: 740 TNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 799
Query: 730 KPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789
KPDHVTFVSLLSACNHGGLVD+GL YY++MT EFGV GIEHCVCIIDLLGRSGRL+ AE
Sbjct: 800 KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE 859
Query: 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATG 849
FI +MPV PNDL WRSLLA+ +IHGN+ELA+K AEHL ELDPSDDS+YVLYSNVCA +G
Sbjct: 860 GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSG 919
Query: 850 RWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIK 909
+W+DVEN+R++MG N IKK+PACSWVK KD V+SFGMG+ HP I AKL EL KM K
Sbjct: 920 KWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTK 979
Query: 910 EAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHS 969
EAGYVPDTSFAL D DEEQKE+NLWNHSERLALAFGLIN+PE ST+RIFKNLRVC DCHS
Sbjct: 980 EAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHS 1039
Query: 970 VYKFISKIVRRRIILRDPYRFHHFYGGECSCL 1001
VYKF+S IV R+I+LRDPYRFHHF GG+CSC+
Sbjct: 1040 VYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCV 1071
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp. lyrata] gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1292 bits (3343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/989 (61%), Positives = 768/989 (77%), Gaps = 1/989 (0%)
Query: 17 YFLLNHPDPEISCFYQKGFSQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCL 76
+ L +H +PE+SCF Q GFSQIT E+ G+ALHALC+KGLV SV + NTLINMY KFG +
Sbjct: 50 FSLSDHWNPELSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRV 109
Query: 77 GYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSAC 136
ARY+FDKM +N+ SWN MSG+VR+GLY E + FF +M G++P+ +I+SL++AC
Sbjct: 110 KPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTAC 169
Query: 137 DWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSW 196
SG M EG+QVHGF K GLL DV+V T++LH YG YG ++ +R+VFEEMP RNVVSW
Sbjct: 170 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 229
Query: 197 TSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIK 256
TSLMV Y D G P EV+D+Y+ MR EGV CNEN+ + VI+SCGL +++ LG +G VIK
Sbjct: 230 TSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIK 289
Query: 257 FGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKC 316
G + V NSLISMFGN G+V A IF+ + RDTISWNS+++ Y+ +G ++S +
Sbjct: 290 SGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRI 349
Query: 317 FHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSE 376
F+ MR E+NSTT STLLS G VD+ KWGRGIHGL VK+ +S V VCNTLL MY+
Sbjct: 350 FNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAG 409
Query: 377 AGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSA 436
AGRSE+A VF++M +D +SWNSL+AS V D + +DAL I +M++ + VNYVTFTSA
Sbjct: 410 AGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSA 469
Query: 437 LAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDT 496
LAAC P F +G+I+H LV+ GL DN I+GNALVSMY K G MS +++V MP+RD
Sbjct: 470 LAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDV 529
Query: 497 VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHT 556
V WNALIGG++E E+PDKAL A++ +R EG NYIT +VL ACL PGDLL G P+H
Sbjct: 530 VAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA 589
Query: 557 HIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEE 616
+IV GFES ++V+NSLITMYAKCGDL+SS +F GL ++ +TWNA++AANA HG GEE
Sbjct: 590 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEE 649
Query: 617 VLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMD 676
VLKL+ KMR G+ D+FS SEGL+AAAKLAVLEEG QLHGLA KLGF+LD F+ NAA D
Sbjct: 650 VLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAAD 709
Query: 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVT 735
MY KCGEIG+V+++ P V+R SWNILIS RHGYF++ ETF EML+ +KP HVT
Sbjct: 710 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVT 769
Query: 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795
FVSLL+AC+HGGLVD+GL YY+ + +FG+ IEHC+C+IDLLGRSGRLAEAETFI+KM
Sbjct: 770 FVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 829
Query: 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855
P+ PNDLVWRSLLAS KIH +++ +KAAE+L +L+P DDS +VL SN+ A TGRW+DVE
Sbjct: 830 PMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVE 889
Query: 856 NVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVP 915
NVR+QMG+ IKKK ACSWVK KD V+SFG+GD +HP T IYAKLE++KK+IKE+GYV
Sbjct: 890 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 949
Query: 916 DTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFIS 975
DTS ALQDTDEEQKEHNLWNHSERLALA+ L+++PEGST+RIFKNLR+CSDCHSVYKF+S
Sbjct: 950 DTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVS 1009
Query: 976 KIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
+++ RRI+LRD YRFHHF G CSC DYW
Sbjct: 1010 RVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa] gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/908 (68%), Positives = 742/908 (81%), Gaps = 1/908 (0%)
Query: 98 MSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVG 157
MSG VR G Y+ES+ FFNEM FGV+P+G+ ++SL++AC+ S +M+ EG+QVHGF VKVG
Sbjct: 1 MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60
Query: 158 LLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYR 217
LL DVFVGTSL+H YG YG A +VF+EM +NVVSWT+LMVAY+D G P V+++YR
Sbjct: 61 LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120
Query: 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG 277
MR EG+ CN+NT ++VI++C EN+LLGY LGHVIK+G V VANSLISMFG FG
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFG 180
Query: 278 SVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLS 337
SV+EA +F M DTISWNSMI+ Y +GLC +SL+CF WM V +EINSTT ST+L+
Sbjct: 181 SVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLA 240
Query: 338 ACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVS 397
CGSVDNLKWGRGIH L +K NSNV NTL+ MYS+AGR EDA+ VFQ M E+D +S
Sbjct: 241 GCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMIS 300
Query: 398 WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVI 457
WNS++A + QD +DALK+ + M +R NYVTFTSALAACSDP F +GKI+HALVI
Sbjct: 301 WNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVI 360
Query: 458 TMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALK 517
+GLH+N+IVGNALV++YAKSG+M EAK+VF+ MPKRD VTWNALIGGH++ EEPD+ALK
Sbjct: 361 HVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALK 420
Query: 518 AYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMY 577
A+K MREEG P+NYIT +NVLGACL P DLL HGMPIH I+LTGF+S +YVQNSLITMY
Sbjct: 421 AFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMY 480
Query: 578 AKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS 637
AKCGDLNSSN IF+ L KN+ WNAM+AANA HG EE LK L++MR GV D FS S
Sbjct: 481 AKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFS 540
Query: 638 EGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR 697
E LAAAAKLA+LEEG QLHGLA KLG D +PFV +A MDMYGKCGEI DVLRI P+P++R
Sbjct: 541 ECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINR 600
Query: 698 PRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYY 756
RLSWNIL S F+RHG+F+KA ETF EM+ VKPDHVTFVSLLSAC+HGG+V++GL YY
Sbjct: 601 SRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYY 660
Query: 757 NTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGN 816
++M EFG+PA I HCVCIIDLLGRSGR AEAETFI +MPV+P D VWRSLLA+ K HGN
Sbjct: 661 DSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGN 720
Query: 817 VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVK 876
+EL +KA E+L +LDPSDDS+YVLYSN+CA TG+W+DVE +RRQMG NKIKKKPACSWVK
Sbjct: 721 LELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVK 780
Query: 877 SKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNH 936
K+ ++ FGMGDHSHP IYAKLEELKKMIKEAGY+PD S+ALQDTDEEQKEHNLWNH
Sbjct: 781 LKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNH 840
Query: 937 SERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYGG 996
SERLALA+GLI+SPEGST++IFKNLRVC DCHSVYKF S I+ R+I+LRDPYRFH F GG
Sbjct: 841 SERLALAYGLISSPEGSTLKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGG 900
Query: 997 ECSCLDYW 1004
+CSC DYW
Sbjct: 901 QCSCTDYW 908
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1267 bits (3278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/989 (60%), Positives = 760/989 (76%), Gaps = 5/989 (0%)
Query: 18 FLLNHPDPEISCFYQKGFSQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLG 77
F+ NH +P++S F QKGFS+I+ +VGKALHALC+K ++ + FY NTL+NMY KFG +
Sbjct: 140 FIRNHSNPQVSRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIK 199
Query: 78 YARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACD 137
YA++VFDKM D+NDASWNN +SG VR+G Y +++ FF M GV P+ +I+S+++ACD
Sbjct: 200 YAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACD 259
Query: 138 WSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWT 197
SG M Q+HG+ VK GL+ +VFVGTSLLHFYGT+G +++A ++FEE+ N+VSWT
Sbjct: 260 RSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWT 319
Query: 198 SLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF 257
SLMV Y DNG EV+++YR++R G+ C NT A VI +CG+ + +GY LG VIK
Sbjct: 320 SLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKS 379
Query: 258 GFHYT-VPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKC 316
G + V VANSLISMFGN+ SV+EA +F++M RDTISWNS+I+ +H+G ++SL
Sbjct: 380 GLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGH 439
Query: 317 FHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSE 376
F WMR + + T S LL ACGS +LKWGRG+HGL K L SNV VCN+LL+MY++
Sbjct: 440 FFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQ 499
Query: 377 AGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSA 436
AG SEDA+ VF M RD +SWNS++ASHV+D KY A+ + ML+ ++ +NYVTFT+A
Sbjct: 500 AGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTA 559
Query: 437 LAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDT 496
L+AC + + + KI+HA VI +H NLI+GN LV+MY K G+M EA++V +IMP+RD
Sbjct: 560 LSACYN---LEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDV 616
Query: 497 VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHT 556
VTWNALIGGH++ ++P+ ++A+ MR EG NYIT N+LG C++P LL HGMPIH
Sbjct: 617 VTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHA 676
Query: 557 HIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEE 616
HIV+ GFE YVQ+SLITMYA+CGDLN+S+YIF+ LA KNS TWNA+ +ANA +G GEE
Sbjct: 677 HIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEE 736
Query: 617 VLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMD 676
LK + +MR+ GV D+FS S LA L VL+EG QLH KLGF+LD +V NA MD
Sbjct: 737 ALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMD 796
Query: 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVT 735
MYGKCGEI DV RI P P R + SWNILIS ARHG+F++A E F EML +KPDHVT
Sbjct: 797 MYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVT 856
Query: 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795
FVSLLSAC+HGGLVD+GL Y+++MT+EFGVP IEHCVCIIDLLGRSGRLAEAE FI+KM
Sbjct: 857 FVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKM 916
Query: 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855
PV PN+ VWRSLLA+ K+HGN+EL +KAA+ LFEL+ SDDS+YVLYSNVCA+T RW DVE
Sbjct: 917 PVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVE 976
Query: 856 NVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVP 915
NVR+QM +KKKPACSW+K K+ V +FGMGD HP + IYAKLEEL+KM +E G++P
Sbjct: 977 NVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMP 1036
Query: 916 DTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFIS 975
DTS+ALQDTDEEQKEHNLWNHSER+ALAFGLINS EGS +RIFKNLRVC DCHSV+K +S
Sbjct: 1037 DTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLVS 1096
Query: 976 KIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
KIV R+I++RD YRFHHF+GG+CSC DYW
Sbjct: 1097 KIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/985 (60%), Positives = 740/985 (75%), Gaps = 26/985 (2%)
Query: 21 NHPDPEISCFYQKGFSQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYAR 80
NH +PEISCF Q GFSQIT E+ G+A+HALC+KGLV SV + NTLINMY KFG + AR
Sbjct: 68 NHWNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPAR 127
Query: 81 YVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSG 140
++FD M +N+ SWN MSG+VR+GLY E + FF +M G++P+ +I+SL++AC SG
Sbjct: 128 HLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG 187
Query: 141 FMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLM 200
M EG+QVHGF K GLL DV+V T++LH YG YG ++ +R+VFEEMP RNVVSWTSLM
Sbjct: 188 SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLM 247
Query: 201 VAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFH 260
V Y D G P EV+D+Y+ ++ LG +G V+K G
Sbjct: 248 VGYSDKGEPEEVIDIYK-------------------------DESLGRQIIGQVVKSGLE 282
Query: 261 YTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWM 320
+ V NSLISM G+ G+V A IFD M RDTISWNS+ + Y+ +G ++S + F M
Sbjct: 283 SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLM 342
Query: 321 RHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRS 380
R E+NSTT STLLS G VD+ KWGRGIHGL VK+ +S V VCNTLL MY+ AGRS
Sbjct: 343 RRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRS 402
Query: 381 EDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAAC 440
+A VF++M +D +SWNSL+AS V D + +DAL + +M+ + VNYVTFTSALAAC
Sbjct: 403 VEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 462
Query: 441 SDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWN 500
P F +G+I+H LV+ GL N I+GNALVSMY K G MSE+++V MP+RD V WN
Sbjct: 463 FTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWN 522
Query: 501 ALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVL 560
ALIGG++E E+PDKAL A++ MR EG NYIT +VL ACL PGDLL G P+H +IV
Sbjct: 523 ALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVS 582
Query: 561 TGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKL 620
GFES ++V+NSLITMYAKCGDL+SS +F GL +N +TWNAM+AANA HG GEEVLKL
Sbjct: 583 AGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKL 642
Query: 621 LVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGK 680
+ KMR GV D+FS SEGL+AAAKLAVLEEG QLHGLA KLGF+ D F+ NAA DMY K
Sbjct: 643 VSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSK 702
Query: 681 CGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSL 739
CGEIG+V+++ P V+R SWNILIS RHGYF++ TF EML+ +KP HVTFVSL
Sbjct: 703 CGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSL 762
Query: 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTP 799
L+AC+HGGLVDKGL YY+ + +FG+ IEHC+C+IDLLGRSGRLAEAETFI+KMP+ P
Sbjct: 763 LTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKP 822
Query: 800 NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859
NDLVWRSLLAS KIHGN++ +KAAE+L +L+P DDS YVL SN+ A TGRW+DVENVR+
Sbjct: 823 NDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRK 882
Query: 860 QMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSF 919
QMG+ IKKK ACSWVK KD V+SFG+GD +HP T IYAKLE++KK+IKE+GYV DTS
Sbjct: 883 QMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQ 942
Query: 920 ALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVR 979
ALQDTDEEQKEHNLWNHSERLALA+ L+++PEGST+RIFKNLR+CSDCHSVYKF+S+++
Sbjct: 943 ALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIG 1002
Query: 980 RRIILRDPYRFHHFYGGECSCLDYW 1004
RRI+LRD YRFHHF G CSC DYW
Sbjct: 1003 RRIVLRDQYRFHHFERGLCSCKDYW 1027
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1239 bits (3205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/937 (62%), Positives = 728/937 (77%), Gaps = 4/937 (0%)
Query: 69 MYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVL 128
MY KFG + +A++VFDKM ++N+ASWNN MSG VR+G YQ+++ FF ML GVRP+ +
Sbjct: 1 MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60
Query: 129 ISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM 188
+SL++ACD SG M QVH +K GL CDVFVGTSLLHFYGT+G + + VF+E+
Sbjct: 61 AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120
Query: 189 PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGY 248
N+VSWTSLMV Y NG EV+ +YR +RR+GV CNEN A VI SCG+ + +LGY
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180
Query: 249 LFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSG 308
LG VIK G TV VANSLISMFGN S++EA C+FD M RDTISWNS+I+ H+G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240
Query: 309 LCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN 368
C++SL+ F MR+ + + T S LL CGS NL+WGRG+HG+ VK L SNV VCN
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300
Query: 369 TLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV 428
+LL+MYS+AG+SEDA+FVF +M ERD +SWNS++ASHV + Y AL++ MLQ ++
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT 360
Query: 429 NYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488
NYVTFT+AL+AC + + KI+HA VI +GLH NLI+GNALV+MY K G M+ A++V
Sbjct: 361 NYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVC 417
Query: 489 RIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLL 548
+IMP RD VTWNALIGGH++ +EP+ A++A+ +REEG P+NYIT N+L A L+P DLL
Sbjct: 418 KIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLL 477
Query: 549 IHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAAN 608
HGMPIH HIV+ GFE +VQ+SLITMYA+CGDLN+SNYIF+ LA KNS TWNA+++AN
Sbjct: 478 DHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSAN 537
Query: 609 ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDP 668
A +G GEE LKL++KMR+ G++ D+FS S A L +L+EG QLH L K GF+ +
Sbjct: 538 AHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESND 597
Query: 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY 728
+V NA MDMYGKCGEI DV RI PQP R + SWNILIS ARHG+FQ+A E F EML
Sbjct: 598 YVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDL 657
Query: 729 -VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAE 787
++PDHVTFVSLLSAC+HGGLVD+GL Y+++M+T+FGVP GIEHCVCIIDLLGR+G+L E
Sbjct: 658 GLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTE 717
Query: 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA 847
AE FINKMPV P DLVWRSLLA+ KIHGN+ELA+KAA+ LFELD SDDS+YVLYSNVCA+
Sbjct: 718 AENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCAS 777
Query: 848 TGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKM 907
T RW DVENVR+QM + IKKKPACSWVK K+ V +FGMGD HP IYAKLEELKK+
Sbjct: 778 TRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKI 837
Query: 908 IKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDC 967
I+EAGY+PDTS++LQDTDEEQKEHNLWNHSER+ALAFGLINS EGS +RIFKNLRVC DC
Sbjct: 838 IREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDC 897
Query: 968 HSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
HSV+K +S+I+ R+IILRD YRFHHF G+CSC DYW
Sbjct: 898 HSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cucumis sativus] gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/938 (61%), Positives = 728/938 (77%), Gaps = 2/938 (0%)
Query: 69 MYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVL 128
MY KFG + YA+ VFD+M ++N+ASWN+ MSG VR+G Y E+V FF ++ G++P+G +
Sbjct: 1 MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60
Query: 129 ISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM 188
I+SL++AC+ S M EG Q HGF++K GL+ DVFVGTS +HFY +YG ++ A+++F EM
Sbjct: 61 IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120
Query: 189 PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGY 248
P RNVVSWTSLMV+Y DNGS EV++ Y+ MR EG+CCNEN A VI+SCG + +LG+
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180
Query: 249 LFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSG 308
LGH +KFG V ANSLI MFG G + EA IF+ M+ RDTISWNS+IS + +
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240
Query: 309 LCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN 368
L ++S + FHWMR V +EIN TT S LLS CGSVD LKWG+G+HGLAVK L SN+ +CN
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCN 300
Query: 369 TLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV 428
TLL++YS+AGRS+DA+ +F+ M ERD +SWNS++A +VQD + + ALK+F+ ML ++ +
Sbjct: 301 TLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEI 360
Query: 429 NYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488
NYVTFTSALAAC DP F GKI+H V+ +GL D LI+GN L++ Y K M+EAK+VF
Sbjct: 361 NYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVF 420
Query: 489 RIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTP-MNYITFANVLGACLNPGDL 547
+ MPK D VTWNALIGG + E ++A+ A+K MRE T ++YIT N+LG+CL DL
Sbjct: 421 QRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDL 480
Query: 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAA 607
+ +G+PIH H V+TGF+ ++VQ+SLITMYAKCGDL+SS+YIF+ L K S WNA+IAA
Sbjct: 481 IKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAA 540
Query: 608 NALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLD 667
NA +G GEE LKL+V+MR G+ FD+F+ S L+ AA LA+LEEG QLHG KLGF+LD
Sbjct: 541 NARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELD 600
Query: 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK 727
F+ NAAMDMYGKCGE+ D LRI PQP DR RLSWN LIS+ ARHG F KA ETF +MLK
Sbjct: 601 HFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLK 660
Query: 728 Y-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLA 786
VKP+HV+FV LLSAC+HGGLVD+GL YY +MT+ +G+ GIEHCVC+IDLLGRSGRL
Sbjct: 661 LGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLV 720
Query: 787 EAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846
EAE FI +MP+ PNDLVWRSLLAS +I+ N++L +KAA+HL ELDPSDDS+YVLYSNV A
Sbjct: 721 EAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFA 780
Query: 847 ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKK 906
GRW+DVE+VR QMG +KI+KKPA SWVK K ++ FGMGD +HP E I KL L K
Sbjct: 781 TIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMK 840
Query: 907 MIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSD 966
++ EAGYVPDTS++LQDTDEEQKEHN+W+HSER+ALAFGLIN PEGST+RIFKNLRVC D
Sbjct: 841 IVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRVCGD 900
Query: 967 CHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
CHS +KF+S ++ R+I+LRDPYRFHHF G CSC DYW
Sbjct: 901 CHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana] gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/937 (62%), Positives = 720/937 (76%), Gaps = 1/937 (0%)
Query: 69 MYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVL 128
MY KFG + AR++FD M +N+ SWN MSG+VR+GLY E + FF +M G++P+ +
Sbjct: 1 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60
Query: 129 ISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM 188
I+SL++AC SG M EG+QVHGF K GLL DV+V T++LH YG YG ++ +R+VFEEM
Sbjct: 61 IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120
Query: 189 PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGY 248
P RNVVSWTSLMV Y D G P EV+D+Y+ MR EGV CNEN+ + VI+SCGL +++ LG
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180
Query: 249 LFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSG 308
+G V+K G + V NSLISM G+ G+V A IFD M RDTISWNS+ + Y+ +G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240
Query: 309 LCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN 368
++S + F MR E+NSTT STLLS G VD+ KWGRGIHGL VK+ +S V VCN
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300
Query: 369 TLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV 428
TLL MY+ AGRS +A VF++M +D +SWNSL+AS V D + +DAL + +M+ + V
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV 360
Query: 429 NYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488
NYVTFTSALAAC P F +G+I+H LV+ GL N I+GNALVSMY K G MSE+++V
Sbjct: 361 NYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVL 420
Query: 489 RIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLL 548
MP+RD V WNALIGG++E E+PDKAL A++ MR EG NYIT +VL ACL PGDLL
Sbjct: 421 LQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLL 480
Query: 549 IHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAAN 608
G P+H +IV GFES ++V+NSLITMYAKCGDL+SS +F GL +N +TWNAM+AAN
Sbjct: 481 ERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN 540
Query: 609 ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDP 668
A HG GEEVLKL+ KMR GV D+FS SEGL+AAAKLAVLEEG QLHGLA KLGF+ D
Sbjct: 541 AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDS 600
Query: 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY 728
F+ NAA DMY KCGEIG+V+++ P V+R SWNILIS RHGYF++ TF EML+
Sbjct: 601 FIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEM 660
Query: 729 -VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAE 787
+KP HVTFVSLL+AC+HGGLVDKGL YY+ + +FG+ IEHC+C+IDLLGRSGRLAE
Sbjct: 661 GIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAE 720
Query: 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA 847
AETFI+KMP+ PNDLVWRSLLAS KIHGN++ +KAAE+L +L+P DDS YVL SN+ A
Sbjct: 721 AETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFAT 780
Query: 848 TGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKM 907
TGRW+DVENVR+QMG+ IKKK ACSWVK KD V+SFG+GD +HP T IYAKLE++KK+
Sbjct: 781 TGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKL 840
Query: 908 IKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDC 967
IKE+GYV DTS ALQDTDEEQKEHNLWNHSERLALA+ L+++PEGST+RIFKNLR+CSDC
Sbjct: 841 IKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDC 900
Query: 968 HSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
HSVYKF+S+++ RRI+LRD YRFHHF G CSC DYW
Sbjct: 901 HSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana] gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1185 bits (3065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/912 (62%), Positives = 702/912 (76%), Gaps = 1/912 (0%)
Query: 86 MGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSE 145
M +N+ SWN MSG+VR+GLY E + FF +M G++P+ +I+SL++AC SG M E
Sbjct: 1 MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60
Query: 146 GIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLD 205
G+QVHGF K GLL DV+V T++LH YG YG ++ +R+VFEEMP RNVVSWTSLMV Y D
Sbjct: 61 GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120
Query: 206 NGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPV 265
G P EV+D+Y+ MR EGV CNEN+ + VI+SCGL +++ LG +G V+K G + V
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180
Query: 266 ANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ 325
NSLISM G+ G+V A IFD M RDTISWNS+ + Y+ +G ++S + F MR
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240
Query: 326 EINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKF 385
E+NSTT STLLS G VD+ KWGRGIHGL VK+ +S V VCNTLL MY+ AGRS +A
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300
Query: 386 VFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGF 445
VF++M +D +SWNSL+AS V D + +DAL + +M+ + VNYVTFTSALAAC P F
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360
Query: 446 VVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGG 505
+G+I+H LV+ GL N I+GNALVSMY K G MSE+++V MP+RD V WNALIGG
Sbjct: 361 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 420
Query: 506 HSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFES 565
++E E+PDKAL A++ MR EG NYIT +VL ACL PGDLL G P+H +IV GFES
Sbjct: 421 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 480
Query: 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMR 625
++V+NSLITMYAKCGDL+SS +F GL +N +TWNAM+AANA HG GEEVLKL+ KMR
Sbjct: 481 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 540
Query: 626 HTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG 685
GV D+FS SEGL+AAAKLAVLEEG QLHGLA KLGF+ D F+ NAA DMY KCGEIG
Sbjct: 541 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIG 600
Query: 686 DVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACN 744
+V+++ P V+R SWNILIS RHGYF++ TF EML+ +KP HVTFVSLL+AC+
Sbjct: 601 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 660
Query: 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVW 804
HGGLVDKGL YY+ + +FG+ IEHC+C+IDLLGRSGRLAEAETFI+KMP+ PNDLVW
Sbjct: 661 HGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVW 720
Query: 805 RSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864
RSLLAS KIHGN++ +KAAE+L +L+P DDS YVL SN+ A TGRW+DVENVR+QMG+
Sbjct: 721 RSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFK 780
Query: 865 KIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDT 924
IKKK ACSWVK KD V+SFG+GD +HP T IYAKLE++KK+IKE+GYV DTS ALQDT
Sbjct: 781 NIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDT 840
Query: 925 DEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIIL 984
DEEQKEHNLWNHSERLALA+ L+++PEGST+RIFKNLR+CSDCHSVYKF+S+++ RRI+L
Sbjct: 841 DEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVL 900
Query: 985 RDPYRFHHFYGG 996
RD YRFHHF G
Sbjct: 901 RDQYRFHHFERG 912
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | ||||||
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.932 | 0.998 | 0.610 | 2.60000020455e-317 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.960 | 0.906 | 0.335 | 6.8e-159 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.957 | 0.965 | 0.358 | 3.7e-158 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.720 | 0.730 | 0.354 | 3.1e-153 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.868 | 0.988 | 0.340 | 2.7e-139 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.551 | 0.745 | 0.408 | 1.8e-133 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.737 | 0.896 | 0.360 | 6e-133 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.745 | 0.924 | 0.374 | 1.2e-131 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.731 | 0.891 | 0.369 | 8.1e-131 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.857 | 0.887 | 0.326 | 8.4e-129 |
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3043 (1076.2 bits), Expect = 2.6e-317, P = 2.6e-317
Identities = 572/937 (61%), Positives = 710/937 (75%)
Query: 69 MYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVL 128
MY KFG + AR++FD M +N+ SWN MSG+VR+GLY E + FF +M G++P+ +
Sbjct: 1 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60
Query: 129 ISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM 188
I+SL++AC SG M EG+QVHGF K GLL DV+V T++LH YG YG ++ +R+VFEEM
Sbjct: 61 IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120
Query: 189 PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGY 248
P RNVVSWTSLMV Y D G P EV+D+Y+ MR EGV CNEN+ + VI+SCGL +++ LG
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180
Query: 249 LFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSG 308
+G V+K G + V NSLISM G+ G+V A IFD M RDTISWNS+ + Y+ +G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240
Query: 309 LCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN 368
++S + F MR E+NSTT STLLS G VD+ KWGRGIHGL VK+ +S V VCN
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300
Query: 369 TLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV 428
TLL MY+ AGRS +A VF++M +D +SWNSL+AS V D + +DAL + +M+ + V
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV 360
Query: 429 NYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488
NYVTFTSALAAC P F +G+I+H LV+ GL N I+GNALVSMY K G MSE+++V
Sbjct: 361 NYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVL 420
Query: 489 RIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLL 548
MP+RD V WNALIGG++E E+PDKAL A++ MR EG NYIT +VL ACL PGDLL
Sbjct: 421 LQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLL 480
Query: 549 IHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAAN 608
G P+H +IV GFES ++V+NSLITMYAKCGDL+SS +F GL +N +TWNAM+AAN
Sbjct: 481 ERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN 540
Query: 609 ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDP 668
A HG GEEVLKL+ KMR GV D+FS SEG EEG QLHGLA KLGF+ D
Sbjct: 541 AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDS 600
Query: 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY 728
F+ NAA DMY KCGEIG+V+++ P V+R SWNILIS RHGYF++ TF EML+
Sbjct: 601 FIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEM 660
Query: 729 -VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAE 787
+KP HVTFVSLL+AC+HGGLVDKGL YY+ + +FG+ IEHC+C+IDLLGRSGRLAE
Sbjct: 661 GIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAE 720
Query: 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA 847
AETFI+KMP+ PNDLVWRSLLAS KIHGN++ +KAAE+L +L+P DDS YVL SN+ A
Sbjct: 721 AETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFAT 780
Query: 848 TGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKM 907
TGRW+DVENVR+QMG+ IKKK ACSWVK KD V+SFG+GD +HP T IYAKLE++KK+
Sbjct: 781 TGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKL 840
Query: 908 IKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDC 967
IKE+GYV DTS ALQDTDEEQKEHNLWNHSERLALA+ L+++PEGST+RIFKNLR+CSDC
Sbjct: 841 IKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDC 900
Query: 968 HSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
HSVYKF+S+++ RRI+LRD YRFHHF G CSC DYW
Sbjct: 901 HSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 325/970 (33%), Positives = 532/970 (54%)
Query: 39 TNESV--GKALHALCIK-GLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWN 95
TN S+ G+ LH+ +K GL S + L + Y G L A VFD+M ++ +WN
Sbjct: 97 TNGSLDEGRKLHSQILKLGLDSNGCL-SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155
Query: 96 NTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVK 155
+ L L E G F M+S V P S +L AC Q+H +
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215
Query: 156 VGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDL 215
GL V L+ Y G ++ ARRVF+ + +++ SW +++ N E + L
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275
Query: 216 YRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGN 275
+ M G+ F++V+++C E+ +G G V+K GF V N+L+S++ +
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335
Query: 276 FGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTL 335
G++ A IF +M RD +++N++I+ S G +++++ F M G E +S T ++L
Sbjct: 336 LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 395
Query: 336 LSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDS 395
+ AC + L G+ +H KL SN + LL +Y++ E A F E +
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455
Query: 396 VSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHAL 455
V WN ++ ++ + ++ +IF M ++ + N T+ S L C G + G+ IH+
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515
Query: 456 VITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKA 515
+I N V + L+ MYAK G + A + +D V+W +I G+++ DKA
Sbjct: 516 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 575
Query: 516 LKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLIT 575
L +++M + G + + N + AC L G IH ++GF S QN+L+T
Sbjct: 576 LTTFRQMLDRGIRSDEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLPFQNALVT 634
Query: 576 MYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFS 635
+Y++CG + S FE +++ WNA+++ G EE L++ V+M G+ + F+
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694
Query: 636 LSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV 695
++G Q+H + TK G+D + V NA + MY KCG I D + +
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 754
Query: 696 DRPRLSWNILISVFARHGYFQKAIETFDEML-KYVKPDHVTFVSLLSACNHGGLVDKGLQ 754
+ +SWN +I+ +++HG+ +A+++FD+M+ V+P+HVT V +LSAC+H GLVDKG+
Sbjct: 755 TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 814
Query: 755 YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIH 814
Y+ +M +E+G+ EH VC++D+L R+G L+ A+ FI +MP+ P+ LVWR+LL++ +H
Sbjct: 815 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874
Query: 815 GNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSW 874
N+E+ + AA HL EL+P D ++YVL SN+ A + +WD + R++M +KK+P SW
Sbjct: 875 KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSW 934
Query: 875 VKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLW 934
++ K+ ++SF +GD +HP + I+ ++L K E GYV D L + EQK+ ++
Sbjct: 935 IEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIF 994
Query: 935 NHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFY 994
HSE+LA++FGL++ P I + KNLRVC+DCH+ KF+SK+ R II+RD YRFHHF
Sbjct: 995 IHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054
Query: 995 GGECSCLDYW 1004
GG CSC DYW
Sbjct: 1055 GGACSCKDYW 1064
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 356/992 (35%), Positives = 555/992 (55%)
Query: 36 SQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWN 95
S + + + H+ K + V+ N LIN Y + G AR VFD+M +N SW
Sbjct: 12 SCVGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWA 71
Query: 96 NTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFM-VSEGIQVHGFSV 154
+SG R G ++E++ F +M+ G+ S+L AC G + + G Q+HG
Sbjct: 72 CIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMF 131
Query: 155 KVGLLCDVFVGTSLLHFYGT-YGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVV 213
K+ D V L+ Y G + A F ++ V+N VSW S++ Y G
Sbjct: 132 KLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAF 191
Query: 214 DLYRYMRREGVCCNENTFAAVITS-CGLTENDL-LGYLFLGHVIKFGFHYTVPVANSLIS 271
++ M+ +G E TF +++T+ C LTE D+ L + + K G + V + L+S
Sbjct: 192 RIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVS 251
Query: 272 MFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTT 331
F GS+ AR +F+ M R+ ++ N ++ +++ K F M + +++ +
Sbjct: 252 AFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPES 310
Query: 332 FSTLLSACGSVD-----NLKWGRGIHGLAVKLAL-NSNVWVCNTLLAMYSEAGRSEDAKF 385
+ LLS+ LK GR +HG + L + V + N L+ MY++ G DA+
Sbjct: 311 YVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARR 370
Query: 386 VFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGF 445
VF M+++DSVSWNS++ Q+ +I+A++ + +M + L T S+L++C+ +
Sbjct: 371 VFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKW 430
Query: 446 VVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGG 505
G+ IH + +G+ N+ V NAL+++YA++G ++E +++F MP+ D V+WN++IG
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 490
Query: 506 --HSEKEEPDKALKAYKRMREEGTPMNYITFANVLGAC--LNPGDLLIHGMPIHTHIVLT 561
SE+ P+ A+ + + G +N ITF++VL A L+ G+L G IH +
Sbjct: 491 LARSERSLPE-AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGEL---GKQIHGLALKN 546
Query: 562 GFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHGQG-EEVLK 619
+N+LI Y KCG+++ IF +AE+ ++VTWN+MI+ +H + + L
Sbjct: 547 NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY-IHNELLAKALD 605
Query: 620 LLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679
L+ M TG D F + E G ++H + + + D V +A +DMY
Sbjct: 606 LVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYS 665
Query: 680 KCGEIGDVLRIA-PQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK--YVKPDHVTF 736
KCG + LR PV R SWN +IS +ARHG ++A++ F+ M PDHVTF
Sbjct: 666 KCGRLDYALRFFNTMPV-RNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTF 724
Query: 737 VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP 796
V +LSAC+H GL+++G +++ +M+ +G+ IEH C+ D+LGR+G L + E FI KMP
Sbjct: 725 VGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMP 784
Query: 797 VTPNDLVWRSLL-ASSKIHGN-VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854
+ PN L+WR++L A + +G EL KKAAE LF+L+P + +YVL N+ AA GRW+D+
Sbjct: 785 MKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDL 844
Query: 855 ENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYV 914
R++M +KK+ SWV KDGV+ F GD SHPD + IY KL+EL + +++AGYV
Sbjct: 845 VKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYV 904
Query: 915 PDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGST--IRIFKNLRVCSDCHSVYK 972
P T FAL D ++E KE L HSE+LA+AF ++ + ST IRI KNLRVC DCHS +K
Sbjct: 905 PQTGFALYDLEQENKEEILSYHSEKLAVAF-VLAAQRSSTLPIRIMKNLRVCGDCHSAFK 963
Query: 973 FISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
+ISKI R+IILRD RFHHF G CSC D+W
Sbjct: 964 YISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1259 (448.2 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 260/733 (35%), Positives = 416/733 (56%)
Query: 277 GSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLL 336
G VK D+ V + I N +S Y HSG LKCF M E + TF +L
Sbjct: 263 GQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
Query: 337 SACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSV 396
+ VD+L G+ +H +A+KL L+ + V N+L+ MY + + A+ VF MSERD +
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382
Query: 397 SWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSD-PGFVVQGKIIHAL 455
SWNS++A Q+ ++A+ +F +L+ + T TS L A S P + K +H
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVH 442
Query: 456 VITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKA 515
I + + V AL+ Y+++ M EA+ +F D V WNA++ G+++ + K
Sbjct: 443 AIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKT 501
Query: 516 LKAYKRMREEGTPMNYITFANVLGACLNPGDLLI--HGMPIHTHIVLTGFESHKYVQNSL 573
LK + M ++G + T A V C G L G +H + + +G++ +V + +
Sbjct: 502 LKLFALMHKQGERSDDFTLATVFKTC---GFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 558
Query: 574 ITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR 633
+ MY KCGD++++ + F+ + + V W MI+ +G+ E + +MR GV D
Sbjct: 559 LDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDE 618
Query: 634 FSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ 693
F+++ E+G Q+H A KL DPFV + +DMY KCG I D + +
Sbjct: 619 FTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKR 678
Query: 694 PVDRPRLS-WNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDK 751
++ ++ WN ++ A+HG ++ ++ F +M +KPD VTF+ +LSAC+H GLV +
Sbjct: 679 -IEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSE 737
Query: 752 GLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASS 811
++ +M ++G+ IEH C+ D LGR+G + +AE I M + + ++R+LLA+
Sbjct: 738 AYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAAC 797
Query: 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPA 871
++ G+ E K+ A L EL+P D S+YVL SN+ AA +WD+++ R M +K+KK P
Sbjct: 798 RVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPG 857
Query: 872 CSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEH 931
SW++ K+ ++ F + D S+ TE IY K++++ + IK+ GYVP+T F L D +EE+KE
Sbjct: 858 FSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKER 917
Query: 932 NLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFH 991
L+ HSE+LA+AFGL+++P + IR+ KNLRVC DCH+ K+I+K+ R I+LRD RFH
Sbjct: 918 ALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFH 977
Query: 992 HFYGGECSCLDYW 1004
F G CSC DYW
Sbjct: 978 RFKDGICSCGDYW 990
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
Identities = 299/879 (34%), Positives = 489/879 (55%)
Query: 130 SSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM- 188
S +S S ++E ++H + +GL F L+ Y + + VF +
Sbjct: 7 SPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66
Query: 189 PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSC-GLTENDLLG 247
P +NV W S++ A+ NG E ++ Y +R V ++ TF +VI +C GL + ++ G
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM-G 125
Query: 248 YLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHS 307
L ++ GF + V N+L+ M+ G + AR +FD M VRD +SWNS+IS YS
Sbjct: 126 DLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH 185
Query: 308 GLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVC 367
G +++L+ +H +++ +S T S++L A G++ +K G+G+HG A+K +NS V V
Sbjct: 186 GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245
Query: 368 NTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRL 427
N L+AMY + R DA+ VF EM RDSVS+N+++ +++ E +++++F L + +
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFK- 304
Query: 428 VNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQV 487
+ +T +S L AC + K I+ ++ G V N L+ +YAK G M A+ V
Sbjct: 305 PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364
Query: 488 FRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDL 547
F M +DTV+WN++I G+ + + +A+K +K M ++IT+ ++ DL
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADL 424
Query: 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAA 607
G +H++ + +G V N+LI MYAKCG++ S IF + ++VTWN +I+A
Sbjct: 425 KF-GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483
Query: 608 NALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLD 667
G L++ +MR + V D + G ++H + G++ +
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543
Query: 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK 727
+ NA ++MY KCG + + R+ + R ++W +I + +G +KA+ETF +M K
Sbjct: 544 LQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603
Query: 728 Y-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLA 786
+ PD V F++++ AC+H GLVD+GL + M T + + IEH C++DLL RS +++
Sbjct: 604 SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663
Query: 787 EAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846
+AE FI MP+ P+ +W S+L + + G++E A++ + + EL+P D +L SN A
Sbjct: 664 KAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723
Query: 847 ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKK 906
A +WD V +R+ + I K P SW++ V+ F GD S P +E IY LE L
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYS 783
Query: 907 MIKEAGYVPDTSFALQDTDEEQKEHNL-WNHSERLALAFGLINSPEGSTIRIFKNLRVCS 965
++ + GY+PD Q+ +EE+++ L HSERLA+AFGL+N+ G+ +++ KNLRVC
Sbjct: 784 LMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCG 843
Query: 966 DCHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
DCH V K ISKIV R I++RD RFH F G CSC D W
Sbjct: 844 DCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
Identities = 228/558 (40%), Positives = 331/558 (59%)
Query: 449 GKIIHALVITMGLHD-NLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHS 507
G I A + GL D N ++ N+L+ GM+ +A Q+FR M K D+V+W A+I G +
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK-DSVSWAAMIKGLA 246
Query: 508 EKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHK 567
+ +A++ ++ M+ +G M+ F +VL AC G + G IH I+ T F+ H
Sbjct: 247 QNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLG-AINEGKQIHACIIRTNFQDHI 305
Query: 568 YVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHT 627
YV ++LI MY KC L+ + +F+ + +KN V+W AM+ G+ EE +K+ + M+ +
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365
Query: 628 GVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDV 687
G+ D ++L + EEG Q HG A G V+N+ + +YGKCG+I D
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 688 LRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHG 746
R+ + R +SW ++S +A+ G + I+ FD+M+++ +KPD VT ++SAC+
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485
Query: 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRS 806
GLV+KG +Y+ MT+E+G+ I H C+IDL RSGRL EA FIN MP P+ + W +
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTT 545
Query: 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKI 866
LL++ + GN+E+ K AAE L ELDP + Y L S++ A+ G+WD V +RR M +
Sbjct: 546 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605
Query: 867 KKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDE 926
KK+P SW+K K ++SF D S P + IYAKLEEL I + GY PDTSF D +E
Sbjct: 606 KKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEE 665
Query: 927 EQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRD 986
K L HSERLA+AFGLI P G IR+ KNLRVC DCH+ K IS + R I++RD
Sbjct: 666 AVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRD 725
Query: 987 PYRFHHFYGGECSCLDYW 1004
RFH F G CSC D+W
Sbjct: 726 AVRFHRFKDGTCSCGDFW 743
|
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| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1249 (444.7 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
Identities = 272/755 (36%), Positives = 424/755 (56%)
Query: 260 HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHW 319
H N++IS G V AR +FD+M R ++W ++ Y+ + D++ K F
Sbjct: 76 HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135
Query: 320 M-RHVGQEI-NSTTFSTLLSACG-SVDNLKWGRGIHGLAVKLALNSNVW--VCNTLLAMY 374
M R + + TF+TLL C +V G+ +H AVKL ++N + V N LL Y
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQ-VHAFAVKLGFDTNPFLTVSNVLLKSY 194
Query: 375 SEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFT 434
E R + A +F+E+ E+DSV++N+L+ + +D Y +++ +F M Q + TF+
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254
Query: 435 SALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR 494
L A G+ +HAL +T G + VGN ++ Y+K + E + +F MP+
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314
Query: 495 DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554
D V++N +I +S+ ++ + +L ++ M+ G FA +L N L + G +
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQM-GRQL 373
Query: 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAA---NALH 611
H +L +S +V NSL+ MYAKC + IF+ L ++ +V+W A+I+ LH
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433
Query: 612 GQGEEVLKLLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVT 671
G G LKL KMR + + D+ + + G QLH + G + F
Sbjct: 434 GAG---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG 490
Query: 672 NAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VK 730
+ +DMY KCG I D +++ + DR +SWN LIS A +G + AI F +M++ ++
Sbjct: 491 SGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQ 550
Query: 731 PDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAET 790
PD V+ + +L+AC+H G V++G +Y+ M+ +G+ +H C++DLLGR+GR AEAE
Sbjct: 551 PDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEK 610
Query: 791 FINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP-SDDSSYVLYSNVCAATG 849
+++MP P++++W S+L + +IH N LA++AAE LF ++ D ++YV SN+ AA G
Sbjct: 611 LMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAG 670
Query: 850 RWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIK 909
W+ V +V++ M IKK PA SWV+ ++ F D +HP+ + I K+ EL I+
Sbjct: 671 EWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIE 730
Query: 910 EAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHS 969
GY PDTS +QD DE+ K +L HSERLA+AF LI++PEG I + KNLR C DCH+
Sbjct: 731 REGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHA 790
Query: 970 VYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
K ISKIV+R I +RD RFHHF G CSC DYW
Sbjct: 791 AIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
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| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 282/753 (37%), Positives = 431/753 (57%)
Query: 254 VIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQS 313
V K G + L+S+F +GSV EA +F+ + + + +++M+ ++ D++
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 314 LKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAM 373
L+ F MR+ E F+ LL CG L+ G+ IHGL VK + +++ L M
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 374 YSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTF 433
Y++ + +A+ VF M ERD VSWN++VA + Q+ AL++ +M ++ +++T
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITI 239
Query: 434 TSALAACSDPGFVVQGKIIHALVITMGLHDNLI-VGNALVSMYAKSGMMSEAKQVFRIMP 492
S L A S + GK IH + G D+L+ + ALV MYAK G + A+Q+F M
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGF-DSLVNISTALVDMYAKCGSLETARQLFDGML 298
Query: 493 KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGM 552
+R+ V+WN++I + + E P +A+ +++M +EG ++ L AC + GDL G
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLE-RGR 357
Query: 553 PIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHG 612
IH V G + + V NSLI+MY KC +++++ +F L + V+WNAMI A +G
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 613 QGEEVLKLLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTN 672
+ + L +MR V D F+ +HG+ + D + FVT
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 673 AAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK-YVKP 731
A +DMY KCG I I +R +WN +I + HG+ + A+E F+EM K +KP
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537
Query: 732 DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETF 791
+ VTF+S++SAC+H GLV+ GL+ + M + + ++H ++DLLGR+GRL EA F
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597
Query: 792 INKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851
I +MPV P V+ ++L + +IH NV A+KAAE LFEL+P D +VL +N+ A W
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657
Query: 852 DDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEA 911
+ V VR M ++K P CS V+ K+ V+SF G +HPD++ IYA LE+L IKEA
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717
Query: 912 GYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVY 971
GYVPDT+ L + + KE L HSE+LA++FGL+N+ G+TI + KNLRVC+DCH+
Sbjct: 718 GYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNAT 776
Query: 972 KFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
K+IS + R I++RD RFHHF G CSC DYW
Sbjct: 777 KYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
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| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 276/746 (36%), Positives = 428/746 (57%)
Query: 263 VPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFH-WMR 321
V ++ L++++ G+V AR FD + RD +WN MIS Y +G + ++CF +M
Sbjct: 86 VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145
Query: 322 HVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSE 381
G + TF ++L AC +V + G IH LA+K +V+V +L+ +YS
Sbjct: 146 SSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202
Query: 382 DAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACS 441
+A+ +F EM RD SWN++++ + Q +AL + SN L R ++ VT S L+AC+
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-SNGL---RAMDSVTVVSLLSACT 258
Query: 442 DPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNA 501
+ G +G IH+ I GL L V N L+ +YA+ G + + ++VF M RD ++WN+
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318
Query: 502 LIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLT 561
+I + E+P +A+ ++ MR + +T ++ GD+ + +
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC-RSVQGFTLRK 377
Query: 562 G-FESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKL 620
G F + N+++ MYAK G ++S+ +F L + ++WN +I+ A +G E +++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 437
Query: 621 LVKMRHTG-VYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679
M G + ++ + +G +LHG K G LD FV + DMYG
Sbjct: 438 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497
Query: 680 KCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEML-KYVKPDHVTFVS 738
KCG + D L + Q + WN LI+ HG+ +KA+ F EML + VKPDH+TFV+
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557
Query: 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVT 798
LLSAC+H GLVD+G + M T++G+ ++H C++D+ GR+G+L A FI M +
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617
Query: 799 PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858
P+ +W +LL++ ++HGNV+L K A+EHLFE++P +VL SN+ A+ G+W+ V+ +R
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677
Query: 859 RQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTS 918
++K P S ++ + V F G+ +HP E +Y +L L+ +K GYVPD
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737
Query: 919 FALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIV 978
F LQD ++++KEH L +HSERLA+AF LI +P +TIRIFKNLRVC DCHSV KFISKI
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKIT 797
Query: 979 RRRIILRDPYRFHHFYGGECSCLDYW 1004
R II+RD RFHHF G CSC DYW
Sbjct: 798 EREIIVRDSNRFHHFKNGVCSCGDYW 823
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| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 285/872 (32%), Positives = 462/872 (52%)
Query: 143 VSEGIQVHGF-SVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMV 201
+ G ++H S L D + T ++ Y G + +R VF+ + +N+ W +++
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVIS 159
Query: 202 AYLDNGSPIEVVDLYRYM-RREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFH 260
+Y N EV++ + M + + T+ VI +C + +G G V+K G
Sbjct: 160 SYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLV 219
Query: 261 YTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQS-LKCFHW 319
V V N+L+S +G G V +A +FD M R+ +SWNSMI V+S +G ++S L
Sbjct: 220 EDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEM 279
Query: 320 MRHVGQEI---NSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSE 376
M G + T T+L C + G+G+HG AVKL L+ + + N L+ MYS+
Sbjct: 280 MEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK 339
Query: 377 AGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV--NYVTFT 434
G +A+ +F+ + ++ VSWN++V + + ML V + VT
Sbjct: 340 CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 399
Query: 435 SALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR 494
+A+ C F+ K +H + N +V NA V+ YAK G +S A++VF + +
Sbjct: 400 NAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK 459
Query: 495 DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554
+WNALIGGH++ +P +L A+ +M+ G + T ++L AC L + G +
Sbjct: 460 TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRL-GKEV 518
Query: 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQG 614
H I+ E +V S++++Y CG+L + +F+ + +K+ V+WN +I +G
Sbjct: 519 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 578
Query: 615 EEVLKLLVKMRHTGVYFDRFSLSEGXXXXXXXXXXEEGHQLHGLATKLGFDLDPFVTNAA 674
+ L + +M G+ S+ G + H A K + D F+ +
Sbjct: 579 DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL 638
Query: 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYV-KPDH 733
+DMY K G I ++ ++ SWN +I + HG ++AI+ F+EM + PD
Sbjct: 639 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Query: 734 VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFIN 793
+TF+ +L+ACNH GL+ +GL+Y + M + FG+ ++H C+ID+LGR+G+L +A +
Sbjct: 699 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVA 758
Query: 794 KMPVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWD 852
+ D+ +W+SLL+S +IH N+E+ +K A LFEL+P +YVL SN+ A G+W+
Sbjct: 759 EEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWE 818
Query: 853 DVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAG 912
DV VR++M ++K CSW++ V SF +G+ E I + L+ I + G
Sbjct: 819 DVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMG 878
Query: 913 YVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYK 972
Y PDT D EE+K L HSE+LAL +GLI + EG+TIR++KNLR+C DCH+ K
Sbjct: 879 YRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAK 938
Query: 973 FISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
ISK++ R I++RD RFHHF G CSC DYW
Sbjct: 939 LISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00035690001 | SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (920 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1004 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-145 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-91 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-89 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-42 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-29 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 9e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 566 bits (1461), Expect = 0.0
Identities = 281/799 (35%), Positives = 444/799 (55%), Gaps = 7/799 (0%)
Query: 206 NGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPV 265
+G + + L M+ V +E+ + A+ C G + V +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 266 ANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ 325
N+++SMF FG + A +F M RD SWN ++ Y+ +G D++L +H M G
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 326 EINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKF 385
+ TF +L CG + +L GR +H V+ +V V N L+ MY + G A+
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 386 VFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGF 445
VF M RD +SWN++++ + ++ + ++ L++F M + + +T TS ++AC G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 446 VVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGG 505
G+ +H V+ G ++ V N+L+ MY G EA++VF M +D V+W A+I G
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 506 HSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFES 565
+ + PDKAL+ Y M ++ + IT A+VL AC GDL + G+ +H G S
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV-GVKLHELAERKGLIS 422
Query: 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMR 625
+ V N+LI MY+KC ++ + +F + EK+ ++W ++IA L+ + E L +M
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 626 HTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG 685
T + + +L L+A A++ L G ++H + G D F+ NA +D+Y +CG +
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 686 DVL-RIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSAC 743
+ D +SWNIL++ + HG A+E F+ M++ V PD VTF+SLL AC
Sbjct: 542 YAWNQFNSHEKD--VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLV 803
+ G+V +GL+Y+++M ++ + ++H C++DLLGR+G+L EA FINKMP+TP+ V
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863
W +LL + +IH +VEL + AA+H+FELDP+ Y+L N+ A G+WD+V VR+ M
Sbjct: 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
Query: 864 NKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQD 923
N + P CSWV+ K V++F D SHP + I LE + +K +G S ++ +
Sbjct: 720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779
Query: 924 TDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRII 983
E K+ HSERLA+AFGLIN+ G I + KNL +C +CH+ KFISKIVRR I
Sbjct: 780 I-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838
Query: 984 LRDPYRFHHFYGGECSCLD 1002
+RD +FHHF GECSC D
Sbjct: 839 VRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-145
Identities = 207/576 (35%), Positives = 327/576 (56%), Gaps = 5/576 (0%)
Query: 430 YVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFR 489
Y A A V K ++ V + G + + N ++ M+ K GM+ +A+++F
Sbjct: 126 YDALVEACIALKSIRCV---KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 490 IMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLI 549
MP+R+ +W +IGG + +A ++ M E+G+ TF +L A G
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 550 HGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANA 609
G +H ++ TG +V +LI MY+KCGD+ + +F+G+ EK +V WN+M+A A
Sbjct: 243 -GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 610 LHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPF 669
LHG EE L L +MR +GV D+F+ S + ++LA+LE Q H + GF LD
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEML-KY 728
A +D+Y K G + D + + + +SWN LI+ + HG KA+E F+ M+ +
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788
V P+HVTF+++LSAC + GL ++G + + +M+ + H C+I+LLGR G L EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 789 ETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848
I + P P +W +LL + +IH N+EL + AAE L+ + P ++YV+ N+ ++
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 849 GRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMI 908
GR + V + + PAC+W++ K +SF GD HP + IY KL+EL K I
Sbjct: 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601
Query: 909 KEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCH 968
E GYV + + L D DE++++ + HSE+LA+AFGLIN+ E + ++I ++ R+C DCH
Sbjct: 602 SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCH 661
Query: 969 SVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004
V KFI+ + +R I++RD RFHHF G+CSC DYW
Sbjct: 662 KVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 2e-91
Identities = 180/617 (29%), Positives = 310/617 (50%), Gaps = 10/617 (1%)
Query: 95 NNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSV 154
N+ + L G ++++ M V +L C+W V EG +V ++
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR-AVEEGSRVCSRAL 113
Query: 155 KVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVD 214
V +G ++L + +G + A VF +MP R++ SW L+ Y G E +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 215 LYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFG 274
LY M GV + TF V+ +CG + G HV++FGF V V N+LI+M+
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 275 NFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFST 334
G V AR +FD M RD ISWN+MIS Y +G C + L+ F MR + + + T ++
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 335 LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERD 394
++SAC + + + GR +HG VK +V VCN+L+ MY G +A+ VF M +D
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 395 SVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHA 454
+VSW ++++ + ++ AL+ ++ M Q + +T S L+AC+ G + G +H
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 455 LVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDK 514
L GL ++V NAL+ MY+K + +A +VF +P++D ++W ++I G +
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 515 ALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLI 574
AL +++M P N +T L AC G L+ G IH H++ TG ++ N+L+
Sbjct: 474 ALIFFRQMLLTLKP-NSVTLIAALSACARIGALMC-GKEIHAHVLRTGIGFDGFLPNALL 531
Query: 575 TMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF 634
+Y +CG +N + F EK+ V+WN ++ HG+G ++L +M +GV D
Sbjct: 532 DLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 635 SLSEGLAAAAKLAVLEEGHQL-HGLATKLGFDLDPFVTNAA--MDMYGKCGEIGDVLR-I 690
+ L A ++ ++ +G + H + K + + P + + A +D+ G+ G++ + I
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEK--YSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 691 APQPVDRPRLSWNILIS 707
P+ W L++
Sbjct: 649 NKMPITPDPAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 3e-89
Identities = 170/527 (32%), Positives = 273/527 (51%), Gaps = 16/527 (3%)
Query: 42 SVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTMSGL 101
G + + + S V N +++M+ +FG L +A YVF KM +++ SWN + G
Sbjct: 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162
Query: 102 VRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSAC----DWSGFMVSEGIQVHGFSVKVG 157
+ G + E++ ++ ML GVRP +L C D + G +VH V+ G
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-----RGREVHAHVVRFG 217
Query: 158 LLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYR 217
DV V +L+ Y G + AR VF+ MP R+ +SW +++ Y +NG +E ++L+
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277
Query: 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG 277
MR V + T +VI++C L ++ LG G+V+K GF V V NSLI M+ + G
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 278 SVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLS 337
S EA +F M +D +SW +MIS Y +GL D++L+ + M + T +++LS
Sbjct: 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 338 ACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVS 397
AC + +L G +H LA + L S V V N L+ MYS+ + A VF + E+D +S
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 398 WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVI 457
W S++A + + +AL F ML + N VT +AL+AC+ G ++ GK IHA V+
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 458 TMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALK 517
G+ + + NAL+ +Y + G M+ A F ++D V+WN L+ G+ + A++
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 518 AYKRMREEGTPMNYITFANVLGAC-----LNPGDLLIHGMPIHTHIV 559
+ RM E G + +TF ++L AC + G H M I
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 3e-49
Identities = 104/364 (28%), Positives = 183/364 (50%), Gaps = 16/364 (4%)
Query: 149 VHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGS 208
V+ G D ++ +L + G + ARR+F+EMP RN+ SW +++ +D G+
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204
Query: 209 PIEVVDLYRYMRREGVCCNENTFAAVI-TSCGLTENDLLGYLFLGH-----VIKFGFHYT 262
E L+R M +G TF ++ S GL G G V+K G
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGL------GSARAGQQLHCCVLKTGVVGD 258
Query: 263 VPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRH 322
V+ +LI M+ G +++ARC+FD M + T++WNSM++ Y+ G +++L ++ MR
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 323 VGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT-LLAMYSEAGRSE 381
G I+ TFS ++ + L+ + H ++ ++ V NT L+ +YS+ GR E
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRME 377
Query: 382 DAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACS 441
DA+ VF M ++ +SWN+L+A + + A+++F M+ + N+VTF + L+AC
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 442 DPGFVVQGK-IIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVT-W 499
G QG I ++ + + ++ + + G++ EA + R P + TV W
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497
Query: 500 NALI 503
AL+
Sbjct: 498 AALL 501
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 1e-44
Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 3/333 (0%)
Query: 211 EVVDLYRYMR-REGVCCNENTFAAVITSC-GLTENDLLGYLFLGHVIKFGFHYTVPVANS 268
E ++L+ + +T+ A++ +C L + ++ HV GF + N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY-WHVESSGFEPDQYMMNR 163
Query: 269 LISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEIN 328
++ M G + +AR +FD M R+ SW ++I +G ++ F M G +
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 329 STTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQ 388
TF +L A + + + G+ +H +K + + +V L+ MYS+ G EDA+ VF
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 389 EMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQ 448
M E+ +V+WNS++A + +AL ++ M ++ TF+ + S +
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343
Query: 449 GKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508
K HA +I G +++ ALV +Y+K G M +A+ VF MP+++ ++WNALI G+
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 509 KEEPDKALKAYKRMREEGTPMNYITFANVLGAC 541
KA++ ++RM EG N++TF VL AC
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 5e-42
Identities = 93/281 (33%), Positives = 146/281 (51%), Gaps = 11/281 (3%)
Query: 64 NTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLVRLGLYQESVGFFNEMLS-FGV 122
N ++ M+ K G L AR +FD+M ++N ASW + GLV G Y+E+ F EM
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 123 RPTGVLISSL-LSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKA 181
+ L SA S G Q+H +K G++ D FV +L+ Y G I A
Sbjct: 222 AEPRTFVVMLRASAGLGSARA---GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 182 RRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLT 241
R VF+ MP + V+W S++ Y +G E + LY MR GV ++ TF+ +I +
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF--S 336
Query: 242 ENDLLGYLFLGH--VIKFGFHYTVPVANS-LISMFGNFGSVKEARCIFDSMHVRDTISWN 298
LL + H +I+ GF + VAN+ L+ ++ +G +++AR +FD M ++ ISWN
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395
Query: 299 SMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSAC 339
++I+ Y + G ++++ F M G N TF +LSAC
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 7e-40
Identities = 97/367 (26%), Positives = 173/367 (47%), Gaps = 5/367 (1%)
Query: 38 ITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWNNT 97
+ +E +G+ +H +K + V N+LI MY G G A VF +M K+ SW
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 98 MSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVG 157
+SG + GL +++ + M V P + I+S+LSAC G + G+++H + + G
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG-DLDVGVKLHELAERKG 419
Query: 158 LLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYR 217
L+ V V +L+ Y I+KA VF +P ++V+SWTS++ N E + +R
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG 277
M + N T A +++C + G HV++ G + + N+L+ ++ G
Sbjct: 480 QMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 278 SVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLS 337
+ A F+S H +D +SWN +++ Y G +++ F+ M G + TF +LL
Sbjct: 539 RMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
Query: 338 ACGSVDNLKWG-RGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS-ERDS 395
AC + G H + K ++ N+ ++ + AG+ +A +M D
Sbjct: 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
Query: 396 VSWNSLV 402
W +L+
Sbjct: 658 AVWGALL 664
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-29
Identities = 95/360 (26%), Positives = 157/360 (43%), Gaps = 53/360 (14%)
Query: 43 VGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTMSGLV 102
G+ LH +K V F + LI+MY K G + AR VFD M +K +WN+ ++G
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 103 RLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDV 162
G +E++ + EM GV S ++ ++ Q H ++ G D+
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-LLEHAKQAHAGLIRTGFPLDI 360
Query: 163 FVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRRE 222
T+L+ Y +G + AR VF+ MP +N++SW +L+ Y ++G + V+++ M E
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 223 GVCCNENTFAAVITSC---GLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSV 279
GV N TF AV+++C GL+E + + H P A
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-----HRIKPRA------------- 462
Query: 280 KEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSAC 339
MH + MI + GL D++ + +R + ++ LL+AC
Sbjct: 463 ---------MH------YACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTAC 504
Query: 340 GSVDNLKWGRGIHGLAVKL------ALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER 393
NL+ GR A KL LN+ V LL +Y+ +GR +A V + + +
Sbjct: 505 RIHKNLELGRLA---AEKLYGMGPEKLNNYV----VLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 9e-24
Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 23/131 (17%)
Query: 870 PACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQK 929
P C W + K GD SHP EEL + IK G VP+T D D E+
Sbjct: 1 PGCVWSEGKK----TLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 930 EHN------LWNHSERLALAFGLINSPEGSTIRIFKNL-RVCSDCHSVYKFISKIVRRRI 982
N L +H+E+ ALA+GL+ T RI K L R+C DCH +++I+K R I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 983 ILRDPYRFHHF 993
I+RDP RFHHF
Sbjct: 105 IVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 35 FSQITNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDASW 94
FS++ K HA I+ + N L+++Y K+G + AR VFD+M KN SW
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 95 NNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGF 141
N ++G G ++V F M++ GV P V ++LSAC +SG
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-11
Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 77/371 (20%)
Query: 594 AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHT------GVYFDRFSLSEGLAAAAKLA 647
+ ++ N+ + A HGQ E+ LKLL M+ Y F L E A
Sbjct: 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV---- 102
Query: 648 VLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILIS 707
EEG ++ A L + NA + M+ + GE+ + + +R SWN+L+
Sbjct: 103 --EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 708 VFARHGYFQKAIETFDEML-KYVKPDHVTFVSLLSACNHGGLVD--KGLQYYNTMTTEFG 764
+A+ GYF +A+ + ML V+PD TF +L C GG+ D +G + + FG
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVH-AHVVRFG 217
Query: 765 VPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVT-------------------------- 798
++ +I + + G + A ++MP
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277
Query: 799 --------PNDLVWRSLLASSKIHGNVELAKK----AAEHLFELDPSDDSSYV-LYSNVC 845
P+ + S++++ ++ G+ L ++ + F +D S +S + +Y ++
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL- 336
Query: 846 AATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELK 905
G W + E V +++++ K A SW G G+ D K E
Sbjct: 337 ---GSWGEAEKV-----FSRMETKDAVSWTAMISGYEKNGLPD-----------KALETY 377
Query: 906 KMIKEAGYVPD 916
++++ PD
Sbjct: 378 ALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 7e-09
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 701 SWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSAC 743
++N LI + + G ++A++ F+EM K +KP+ T+ L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-08
Identities = 73/350 (20%), Positives = 144/350 (41%), Gaps = 48/350 (13%)
Query: 293 DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIH 352
D + ++IS + SG D + FH M + G E N TF L+ C + G +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 353 GLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYI 412
G+ + + V N L++ ++G + A V EM + I
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK---------------AETHPI 575
Query: 413 DALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALV 472
D +++T + + AC++ G V + K ++ ++ + V V
Sbjct: 576 DP--------------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 473 SMYAKSGMMSEAKQVFRIMPKR----DTVTWNALI--GGHSEKEEPDKALKAYKRMREEG 526
+ ++ G A ++ M K+ D V ++AL+ GH+ DKA + + R++G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEILQDARKQG 679
Query: 527 TPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSS 586
+ +++++++GAC N + + ++ I N+LIT A C + N
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWK-KALELYEDIKSIKLRPTVSTMNALIT--ALC-EGNQL 735
Query: 587 NYIFEGLAE-------KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629
E L+E N++T++ ++ A+ + L LL + + G+
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 293 DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSAC 339
D +++N++I Y G +++LK F+ M+ G + N T+S L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 56/363 (15%)
Query: 433 FTSALAACSDPGFV-VQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIM 491
+T+ ++ C+ G V ++ H +V G+ N+ AL+ A++G +++A + IM
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 492 P----KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPM--NYITFANVLGACLNPG 545
K D V +NALI + D+A M+ E P+ ++IT ++ AC N G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 546 D----LLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK----N 597
++ M IH + + E + NS ++ GD + + I++ + +K +
Sbjct: 594 QVDRAKEVYQM-IHEYNIKGTPEVYTIAVNS----CSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHG 657
V ++A++ G ++ ++L R G+ S S + A + ++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK------ 702
Query: 658 LATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLS-WNILISVFARHGYFQ 716
A+++Y I RP +S N LI+
Sbjct: 703 ----------------ALELYEDIKSIKL----------RPTVSTMNALITALCEGNQLP 736
Query: 717 KAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCI 775
KA+E EM + + P+ +T+ LL A D GL + + G+ + C CI
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCI 795
Query: 776 IDL 778
L
Sbjct: 796 TGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 8e-07
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 495 DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGAC 541
D VT+N LI G+ +K + ++ALK + M++ G N T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 192 NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSC 238
+VV++ +L+ Y G E + L+ M++ G+ N T++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-05
Identities = 80/355 (22%), Positives = 145/355 (40%), Gaps = 83/355 (23%)
Query: 219 MRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGS 278
M GV N +TF A+I C G V K FG +G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARA----------GQVAK---------------AFGAYG- 531
Query: 279 VKEARCIFDSMHVR-DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEI--NSTTFSTL 335
I S +V+ D + +N++IS SG D++ M+ I + T L
Sbjct: 532 ------IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 336 LSAC---GSVDN-LKWGRGIHGLAVK-------LALNSNVWVCNTLLAMYSEAGRSEDAK 384
+ AC G VD + + IH +K +A+NS C S+ G + A
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS----C-------SQKGDWDFAL 634
Query: 385 FVFQEMSER----DSVSWNSLV--ASHVQDEKYID-ALKIFSNMLQKQRLVNYVTFTSAL 437
++ +M ++ D V +++LV A H D +D A +I + ++ + V+++S +
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGD---LDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 438 AACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP----- 492
ACS+ + ++ + ++ L + NAL++ + E Q+ + +
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT------ALCEGNQLPKALEVLSEM 745
Query: 493 KR-----DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACL 542
KR +T+T++ L+ K++ D L + +E+G N + + G CL
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 469 NALVSMYAKSGMMSEAKQVFRIMPKR----DTVTWNALIGGH 506
N L+ Y K G + EA ++F M KR + T++ LI G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 701 SWNILISVFARHGYFQKAIETFDEMLK 727
++N LIS + + G ++A+E F EM +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 47/232 (20%)
Query: 328 NST--TFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKF 385
N T TF+ L+S C S ++ + L + L ++ + TL++ +++G+ DA F
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMF 492
Query: 386 -VFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPG 444
VF EM N+ V ++V TF + + C+ G
Sbjct: 493 EVFHEMV-------NAGVEANVH------------------------TFGALIDGCARAG 521
Query: 445 FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP------KRDTVT 498
V + + ++ + + + +V NAL+S +SG + A V M D +T
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 499 WNALIGGHSEKEEPDKALKAYKRMRE---EGTPMNYITFANVLGACLNPGDL 547
AL+ + + D+A + Y+ + E +GTP Y T A + +C GD
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY-TIA--VNSCSQKGDW 630
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 497 VTWNALIGGHSEKEEPDKALKAYKRMREEG 526
VT+N+LI G+ + + ++AL+ +K M+E+G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 701 SWNILISVFARHGYFQKAIETFDEMLKY-VKPD 732
++N LI + G ++A+E F EM + ++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 56/272 (20%)
Query: 698 PRLS-WNILISVFARHGYFQKAIETFDEMLKYV-----KPDHVTFVSLLSACNHGGLVDK 751
P LS +N+L+SV A + I+ +L+ V K D + +L+S C G VD
Sbjct: 435 PTLSTFNMLMSVCAS----SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 752 GLQYYNTMTTEFGVPAGIEHCV----CIIDLLGRSGRLAEA----ETFINKMPVTPNDLV 803
+ ++ M V AG+E V +ID R+G++A+A +K V P+ +V
Sbjct: 491 MFEVFHEM-----VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVV 544
Query: 804 WRSLLASSKIHGNVE-----LAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858
+ +L+++ G V+ LA+ AE +DP D + CA G+ D + V
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAE-THPIDP-DHITVGALMKACANAGQVDRAKEVY 602
Query: 859 RQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHP-DTEHIYAKLEELKKMIKEAGYVPDT 917
+ + IK P + VNS S D + + +++KK G PD
Sbjct: 603 QMIHEYNIKGTPEVYTI----AVNS-----CSQKGDWDFALSIYDDMKKK----GVKPDE 649
Query: 918 SF--ALQDTDEEQKEHNLWNHSERLALAFGLI 947
F AL D H+ L AF ++
Sbjct: 650 VFFSALVDVA---------GHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 6e-04
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 394 DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSD 442
D V++N+L+ + + K +ALK+F+ M ++ N T++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 9e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 497 VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMN 530
VT+N LI G + ++AL+ +K M+E G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.002
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 89 KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSAC 136
+ ++N + G + G +E++ FNEM G++P S L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629
VT+N++I+ G+ EE L+L +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1004 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.69 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.31 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.31 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.3 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.24 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.08 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.06 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.92 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.9 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.89 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.59 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.41 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.36 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.1 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.96 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.94 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.87 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.53 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.32 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.01 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.93 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.9 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.42 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.18 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.74 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.69 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.4 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.26 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.3 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.24 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.16 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.93 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 91.91 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.35 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 89.93 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.14 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.75 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.04 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.37 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.29 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 84.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.31 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 83.1 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 82.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.82 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.7 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.27 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 80.17 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-158 Score=1463.29 Aligned_cols=809 Identities=34% Similarity=0.615 Sum_probs=799.9
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHH
Q 001852 190 VRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSL 269 (1004)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 269 (1004)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 270 ISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
|.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN 429 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 429 (1004)
++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhC
Q 001852 430 YVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEK 509 (1004)
Q Consensus 430 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 509 (1004)
..||+.+|.+|+..|+++.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHH
Q 001852 510 EEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYI 589 (1004)
Q Consensus 510 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 589 (1004)
|++++|+++|++|.+.|+.||..||+++|.+|++. +.++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 001852 590 FEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPF 669 (1004)
Q Consensus 590 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 669 (1004)
|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCC
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~ 748 (1004)
++|+|+++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+. +.||.+||+.++.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 749 VDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
+++|+++|++|.+++++.|+.+||+||+++|+|+|+++||++++++||++||..+|++|+++|+.|||++.|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 001852 829 ELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMI 908 (1004)
Q Consensus 829 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 908 (1004)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|.|||||||++|++|.|++||++||++++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCCCCCcEEEeeccccccCCcccceeeeeeeeeEEEEeCCC
Q 001852 909 KEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPY 988 (1004)
Q Consensus 909 ~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 988 (1004)
++.||+||++.++++ +|++||+.|++||||||+|||||+||||+||||+||||||+|||+++||||||++|||||||++
T Consensus 765 ~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 765 KASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCC
Confidence 999999999998844 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCCC
Q 001852 989 RFHHFYGGECSCLD 1002 (1004)
Q Consensus 989 r~h~f~~g~csc~~ 1002 (1004)
|||||+||+|||||
T Consensus 844 rfh~f~~g~csc~d 857 (857)
T PLN03077 844 QFHHFKDGECSCGD 857 (857)
T ss_pred cceeCCCCcccCCC
Confidence 99999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-130 Score=1179.67 Aligned_cols=612 Identities=35% Similarity=0.617 Sum_probs=605.3
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC-CcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHH
Q 001852 392 ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ-RLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNA 470 (1004)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 470 (1004)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhc
Q 001852 471 LVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIH 550 (1004)
Q Consensus 471 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 550 (1004)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||.+++.+|+.. +....
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred ccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 001852 551 GMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVY 630 (1004)
Q Consensus 551 ~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 630 (1004)
|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHH
Q 001852 631 FDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFA 710 (1004)
Q Consensus 631 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 710 (1004)
||..||++++.+|++.|.+++|+++|..+.+.|+.||..++++|+++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 711 RHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
++|+.++|+++|++|.+. +.||.+||++++++|++.|++++|.++|+.|.+++++.|+..||+|||++|+|+|+++||.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 999999999999999998 9999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccC
Q 001852 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKK 869 (1004)
Q Consensus 790 ~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 869 (1004)
+++++||+.|+..+|++|+.+|+.+|+++.|+.+++++++++|++++.|+.|+|+|++.|+|++|.++++.|+++|++|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccC
Q 001852 870 PACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINS 949 (1004)
Q Consensus 870 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~ 949 (1004)
|||||||+++++|.|++||++||+.++||.+|++|..+|++.||+||+++++||+++++|++.|++||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeeccccccCCcccceeeeeeeeeEEEEeCCCccccccCcccCCCCCC
Q 001852 950 PEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004 (1004)
Q Consensus 950 ~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~r~h~f~~g~csc~~~w 1004 (1004)
|||+||||+||||||+|||+++||||+|+||||||||++|||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-97 Score=918.65 Aligned_cols=677 Identities=27% Similarity=0.455 Sum_probs=661.1
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhh
Q 001852 87 GDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGT 166 (1004)
Q Consensus 87 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 166 (1004)
+.++..++|.++.+|++.|++++|+.+|++|.+.|+.|+..+|..++++|.+.+.+. .+.++|..+.+.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVE-EGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHH-HHHHHHHHHHHcCCCCCchHHH
Confidence 356788899999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred hHHHHhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhh
Q 001852 167 SLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLL 246 (1004)
Q Consensus 167 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 246 (1004)
+|+.+|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCC
Q 001852 247 GYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQE 326 (1004)
Q Consensus 247 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 326 (1004)
+.++|..+++.|+.||..++|+||.+|+++|++++|.++|++|+.||.++||+||.+|++.|++++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHH
Q 001852 327 INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHV 406 (1004)
Q Consensus 327 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 406 (1004)
||..||+.+|.+|++.|+++.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHH
Q 001852 407 QDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQ 486 (1004)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 486 (1004)
+.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCc
Q 001852 487 VFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESH 566 (1004)
Q Consensus 487 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~ 566 (1004)
+|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||.++|.+|++. +.++.|+++|..+++.|+.+|
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~-g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI-GALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh-chHHHhHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999 999999999999999999999
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLAT-KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-DRPRLSWNILISVFARHGYFQKAIETFDE 724 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 724 (1004)
|.+++|.++++.|. +.|+.|+..+|++|+++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.|....++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999998 78999999999999999999999999999999996 79999999999999999999999999999
Q ss_pred HhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC
Q 001852 725 MLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI 769 (1004)
Q Consensus 725 m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 769 (1004)
+.+ +.| |...|..+.+.|...|++++|.++.+.|++. |+.+++
T Consensus 683 l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~ 726 (857)
T PLN03077 683 IFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDP 726 (857)
T ss_pred HHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCC
Confidence 888 466 5667888888999999999999999999985 877765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-68 Score=642.72 Aligned_cols=474 Identities=22% Similarity=0.396 Sum_probs=459.3
Q ss_pred CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcC-CCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH
Q 001852 291 VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVG-QEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT 369 (1004)
Q Consensus 291 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 369 (1004)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 370 LLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 370 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCC
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPM 529 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 529 (1004)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHH
Q 001852 530 NYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANA 609 (1004)
Q Consensus 530 ~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 609 (1004)
|..||++++.+|++. +.++.|+++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus 324 d~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCChhHHhHHHhhHHhcCChhhHh
Q 001852 610 LHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK-LGFDLDPFVTNAAMDMYGKCGEIGDVL 688 (1004)
Q Consensus 610 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~ 688 (1004)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|++|+++|+++|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 699999999999999999999999999
Q ss_pred hhcCCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 001852 689 RIAPQPV-DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVP 766 (1004)
Q Consensus 689 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 766 (1004)
++|++|+ .|+..+|++|+.+|+.+|+.+.|..+++++.+ ..| +..+|+.+++.|++.|++++|.++++.|.+. |+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 9999997 58999999999999999999999999999977 466 5679999999999999999999999999875 664
Q ss_pred C
Q 001852 767 A 767 (1004)
Q Consensus 767 p 767 (1004)
+
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 3
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=634.43 Aligned_cols=524 Identities=18% Similarity=0.205 Sum_probs=473.3
Q ss_pred cCCCcchhhHHHHHHHccCChhHHHHHhcccCCCChhh-----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHH
Q 001852 56 VSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDAS-----WNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLIS 130 (1004)
Q Consensus 56 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 130 (1004)
-.++...|..+++.|+++|++++|+++|++|+.+++.. ++.++.+|.+.|.+++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 45678899999999999999999999999998776654 45667779999999999999999974 9999999
Q ss_pred HHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC----CCchhHHHHHHHHHHhC
Q 001852 131 SLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP----VRNVVSWTSLMVAYLDN 206 (1004)
Q Consensus 131 ~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 206 (1004)
.+|++|++.+++. .+.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|++.
T Consensus 442 ~LL~a~~k~g~~e-~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDID-GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999 999999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHH--hcCCCChhhhhHHHHHhhCCCCHHHHHH
Q 001852 207 GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIK--FGFHYTVPVANSLISMFGNFGSVKEARC 284 (1004)
Q Consensus 207 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 284 (1004)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6899999999999999999999999999
Q ss_pred HHhhCCC----CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Q 001852 285 IFDSMHV----RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLAL 360 (1004)
Q Consensus 285 ~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 360 (1004)
+|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999974 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHhcCC----CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHH
Q 001852 361 NSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS----ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSA 436 (1004)
Q Consensus 361 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 436 (1004)
.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 589999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----ccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCCh
Q 001852 437 LAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYA----KSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEP 512 (1004)
Q Consensus 437 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 512 (1004)
|.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...| .
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------T 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------H
Confidence 9999999999999999999999999999999999998743 33444334444443333333344 4
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhc
Q 001852 513 DKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEG 592 (1004)
Q Consensus 513 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 592 (1004)
++|+.+|++|++.|+.||..||..+|.++ ++.+..+.+..+++.
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl------------------------------------~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCL------------------------------------QLPHDATLRNRLIEN 872 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHh------------------------------------cccccHHHHHHHHHH
Confidence 56999999999999999999998877433 233556667777776
Q ss_pred CCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh
Q 001852 593 LAE----KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF 634 (1004)
Q Consensus 593 ~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 634 (1004)
|.. ++..+|++||.++.+. .++|+.+|++|...|+.|+..
T Consensus 873 m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 873 LGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 642 3677888888887432 468999999999999998865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=615.08 Aligned_cols=523 Identities=16% Similarity=0.223 Sum_probs=439.2
Q ss_pred CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcc-----hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHH
Q 001852 260 HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTI-----SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFST 334 (1004)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 334 (1004)
.++...|..++..+++.|++++|.++|++|+.++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 455666777777777777777777777777765443 344556667777777777777777753 77778888
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCC----CCCcchHHHHHHHHHcCCC
Q 001852 335 LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS----ERDSVSWNSLVASHVQDEK 410 (1004)
Q Consensus 335 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 410 (1004)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888887777888888888888777888888888888888888888888888888876 4678888888888888888
Q ss_pred HHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHccCChHHHHHHH
Q 001852 411 YIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVIT--MGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488 (1004)
Q Consensus 411 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 488 (1004)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 578888888899999999999999999998
Q ss_pred hcCCC----CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhccc
Q 001852 489 RIMPK----RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFE 564 (1004)
Q Consensus 489 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~ 564 (1004)
+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++. +.++.+.+++..+.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC
Confidence 88873 567889999999999999999999999999999999999999999999888 8888899999999999999
Q ss_pred CchhHHhHHhhHHHHcCChhhHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 565 SHKYVQNSLITMYAKCGDLNSSNYIFEGLA----EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 565 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
|+..+|++||++|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999994 5799999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh----HHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM----YGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQ 716 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 716 (1004)
.+|++.|++++|.++|..|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+ +
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------S 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------H
Confidence 9999999999999999999999999999999999987 45666666666666655555555665 4
Q ss_pred HHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 717 KAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 717 ~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+|+.+|++|++. +.||.+||..++.+++..+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 599999999999 9999999999997777778888777777776543 5666778899999988432 46899999998
Q ss_pred ---CCCCCHH
Q 001852 796 ---PVTPNDL 802 (1004)
Q Consensus 796 ---~~~p~~~ 802 (1004)
.+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 4666653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=409.86 Aligned_cols=806 Identities=12% Similarity=0.009 Sum_probs=642.3
Q ss_pred ccchhhhHHHHHHHhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHH
Q 001852 39 TNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD----KNDASWNNTMSGLVRLGLYQESVGFF 114 (1004)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~ 114 (1004)
+....+...+......+.. +......+...|.+.|++++|...|.+... .....+..+...+.+.|++++|...|
T Consensus 70 g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 148 (899)
T TIGR02917 70 GDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY 148 (899)
T ss_pred CCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566666666665553 334455677788888888888888877642 23456777778888899999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC---CC
Q 001852 115 NEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP---VR 191 (1004)
Q Consensus 115 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~ 191 (1004)
+++.+... .+...+..+...+...|+.. .+..++..+.+.. +.+...+..+...+...|++++|...|++.. ..
T Consensus 149 ~~a~~~~~-~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 149 EQALAIDP-RSLYAKLGLAQLALAENRFD-EARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred HHHHhcCC-CChhhHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 98876532 23445666677777788887 8888888877653 4466777888888889999999999998764 34
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHH
Q 001852 192 NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLIS 271 (1004)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 271 (1004)
+...|..++..+...|++++|...++.+.+.... +..........+...|+++.|...+..+.+.+.. +...+..+..
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~ 303 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGA 303 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 5677888888889999999999999988875422 2223333333445778899999999888876532 2233444556
Q ss_pred HhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhH
Q 001852 272 MFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWG 348 (1004)
Q Consensus 272 ~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 348 (1004)
.+...|++++|...|+.... .+...+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 77888999999999988752 355667788888999999999999999987653 34567788888888899999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC
Q 001852 349 RGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ 425 (1004)
Q Consensus 349 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (1004)
.+++..+.+.. +.+...+..+...+...|+.++|.+.|+.+... +...+..++..+.+.|++++|.++++++...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 99999988764 335667788888899999999999999877643 3456777888899999999999999998764
Q ss_pred CcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhh
Q 001852 426 RLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNAL 502 (1004)
Q Consensus 426 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~l 502 (1004)
.+++..++..+...+...|+.+.|.+.+..+.+.. +.+...+..+...+.+.|++++|.+.|+.+.. .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34466778888888999999999999999988764 34566777888999999999999999998753 356788888
Q ss_pred hHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCC
Q 001852 503 IGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGD 582 (1004)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 582 (1004)
...+.+.|+.++|...|.++...+ +.+...+..+...+... +..+.+..++..+.+. .+.+...+..+...|.+.|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK-GQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998753 23445556666777777 7888888888887654 34567788999999999999
Q ss_pred hhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001852 583 LNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLA 659 (1004)
Q Consensus 583 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 659 (1004)
+++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 367789999999999999999999999998742 334667788888889999999999999998
Q ss_pred HHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 660 TKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 660 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+..++..++..+...|+.++|.+.++++.+..+.+...+.
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8776 45677788899999999999999999998763 55577888999999999999999999999986555778888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
.+...|...|++++|..+|+++.+. -+++...+..++.++.+.|+ ++|.+.++++ ...|+ +.+|..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 8999999999999999999999864 34466788899999999999 8899999886 44444 457888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+++.|...++++++++|.++.++..++.+|.+.|++++|.++.+.|.
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=398.12 Aligned_cols=809 Identities=12% Similarity=0.020 Sum_probs=620.2
Q ss_pred ccchhhhHHHHHHHhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHH
Q 001852 39 TNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD---KNDASWNNTMSGLVRLGLYQESVGFFN 115 (1004)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 115 (1004)
+....+...+...++... .+...+..+...|.+.|++++|...|++..+ ++...+..+...+.+.|++++|+..+.
T Consensus 36 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~ 114 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDP-NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP 114 (899)
T ss_pred CChHhHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhc
Confidence 344445555555444322 2445667788888888888888888877632 234455666778888888888888887
Q ss_pred HHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC---CCc
Q 001852 116 EMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP---VRN 192 (1004)
Q Consensus 116 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~ 192 (1004)
+........+...+..+-..+...|+.. .+...+..+.+... .+...+..+...+...|++++|.++++++. .++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (899)
T TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLE-LAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGN 192 (899)
T ss_pred ccccCCchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6543222333344555556666677777 78888887776543 345667778888888888888888888764 235
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHH
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISM 272 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 272 (1004)
...|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|+++.|...++.+.+.... +..........
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALV 270 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHH
Confidence 5677777788888888888888888887653 345667777777788888888888888888776533 23333334445
Q ss_pred hhCCCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 273 FGNFGSVKEARCIFDSMHVR---DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 273 ~~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
+...|++++|...|+++... +...+..+...+...|++++|...|++..... +.+...+..+...+...|+++.|.
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 56778888888888876533 22334445566778888889988888887653 234556666777778888999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
+.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|+++.....
T Consensus 350 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 350 ATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 8888887664 34567788888888899999999999887754 2456777888888888999999999988876543
Q ss_pred cCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhh
Q 001852 427 LVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALI 503 (1004)
Q Consensus 427 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 503 (1004)
.+ ......++..+...|+.+.+..++..+.+. .+.+..++..+...|...|++++|.+.|+++.+ .+...+..+.
T Consensus 429 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 429 EL-GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 22 233445666778889999999998888764 355677888899999999999999999988652 3455677788
Q ss_pred HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCCh
Q 001852 504 GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL 583 (1004)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 583 (1004)
..+...|++++|.+.|+++...+ +.+..++..+...+... +..+.+...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRT-GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 88899999999999999998753 23445555666666666 77788888887776654 34556777899999999999
Q ss_pred hhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 584 NSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 584 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|+.++|..++..+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998754 367889999999999999999999999998753 2345567777778889999999999999888
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
+.. +.+...+..++..|.+.|++++|.++++.+.. .+...|..+...+...|++++|++.|+++... .|+..++.
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 740 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAI 740 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCchHHH
Confidence 754 34577889999999999999999999998864 35667888999999999999999999999984 67667888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVT-PNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~-p~~~~~~~ll~~~~~~g 815 (1004)
.+..++.+.|++++|.+.++.+.+. .+.+...+..++++|.+.|++++|.+.++++ ... +++.++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999874 3445678888999999999999999999987 333 45678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCC
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNK 865 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 865 (1004)
+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9 889999999999999999999999999999999999999988877643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=285.45 Aligned_cols=106 Identities=61% Similarity=1.023 Sum_probs=99.3
Q ss_pred cccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhh--------hhhhhhhHHHHHH
Q 001852 871 ACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQK--------EHNLWNHSERLAL 942 (1004)
Q Consensus 871 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 942 (1004)
||||+++ |.|++||++||+. .+..++...||.|+++.+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999999 555677788999999999999888766 6799999999999
Q ss_pred HHhhccCCCCCcEEEeecc-ccccCCcccceeeeeeeeeEEEEeCCCcccccc
Q 001852 943 AFGLINSPEGSTIRIFKNL-RVCSDCHSVYKFISKIVRRRIILRDPYRFHHFY 994 (1004)
Q Consensus 943 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~r~h~f~ 994 (1004)
|||||++ ||+||+ |||+|||+++|+||+++||||||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=256.39 Aligned_cols=425 Identities=12% Similarity=0.030 Sum_probs=279.2
Q ss_pred HHHHHhcCChhhHHHHHhcCCC--C-CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCCh
Q 001852 371 LAMYSEAGRSEDAKFVFQEMSE--R-DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFV 446 (1004)
Q Consensus 371 i~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~ 446 (1004)
-..+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+..++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~------- 348 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV------- 348 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh-------
Confidence 3445556666666666666543 2 4555666666666666666666666666543211100 011111100
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHHHH
Q 001852 447 VQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKRMR 523 (1004)
Q Consensus 447 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (1004)
........+...+.+.|++++|...|++... | +...+..+...|...|++++|++.|++..
T Consensus 349 ----------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 349 ----------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred ----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000111234456677778888777777652 2 34456666777777888888888887777
Q ss_pred hcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCC------
Q 001852 524 EEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN------ 597 (1004)
Q Consensus 524 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------ 597 (1004)
+. .|+... .+..+...|. .++.++|...++.++...
T Consensus 413 ~~--~p~~~~-----------------------------------a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 413 RM--DPGNTN-----------------------------------AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred Hh--CCCCHH-----------------------------------HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 63 233211 1122333332 245566666665554321
Q ss_pred ------HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 001852 598 ------SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFV 670 (1004)
Q Consensus 598 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 670 (1004)
...+..+...+...|++++|++.|++..+. .|+. ..+..+...+...|+.++|...++.+++... .++..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHH
Confidence 123455666777788888888888887763 5543 3445555677778888888888887776432 24445
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCC----Chh---------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDR----PRL---------SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
+..+.-.+.+.|+.++|...+++++.. +.. .+..+...+...|+.++|+++++. .+++...+.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~ 607 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHH
Confidence 555566677888888888888877632 111 123456778889999999998872 345666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhc
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPN-DLVWRSLLASSKIH 814 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~-~~~~~~ll~~~~~~ 814 (1004)
.+...+...|++++|+..|+...+. .| +...+..++.+|...|++++|++.++..+ ..|+ ..++..+..++...
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 8889999999999999999999863 44 45778889999999999999999998873 5555 45778888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC------CeehhhhHhhhcCCchHHHHH-HHHHhhCCC
Q 001852 815 GNVELAKKAAEHLFELDPSDDS------SYVLYSNVCAATGRWDDVENV-RRQMGWNKI 866 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~-~~~m~~~~~ 866 (1004)
|+.+.|...++++++..|+++. .+..++.+|...|++++|... ++.|...|+
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 9999999999999998877664 455678999999999999987 445554444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-21 Score=247.56 Aligned_cols=661 Identities=10% Similarity=0.041 Sum_probs=419.8
Q ss_pred HHHHHHHccCChhHHHHHhcccC--C-CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCc
Q 001852 65 TLINMYFKFGCLGYARYVFDKMG--D-KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGF 141 (1004)
Q Consensus 65 ~li~~~~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 141 (1004)
..++.+-..++.+.|++.+++.. . .|...+..++..+.+.|+.++|...+++..+. .|+...+..+.....
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~---- 106 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTML---- 106 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH----
Confidence 45666778899999999998853 3 36777888999999999999999999999874 455443221111110
Q ss_pred chhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCC--CchhHHHH-HHH-HHHhCCCchHHHHHHH
Q 001852 142 MVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV--RNVVSWTS-LMV-AYLDNGSPIEVVDLYR 217 (1004)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~-~~~~~g~~~~a~~l~~ 217 (1004)
. ..|+....-.+...+.+.|++++|.+.|++... |+...... ... .....|+.++|++.|+
T Consensus 107 --------------~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 107 --------------L-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred --------------h-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 0 112333334455677888999999999988653 22221111 111 1223588889999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhC---C-C-C
Q 001852 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSM---H-V-R 292 (1004)
Q Consensus 218 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~-~-~ 292 (1004)
++.+.. +-+......+-..+...|+.++|...++.+.+.... ....+...++.+ . . .
T Consensus 172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-----------------~~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-----------------RDAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-----------------hHHHHHHHHHHHhccCCChh
Confidence 888753 234455666677777788888888888777653210 001111111111 1 0 1
Q ss_pred CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 001852 293 DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLA 372 (1004)
Q Consensus 293 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 372 (1004)
....+...+..+-.......|...+.++......|+... ...-.++...|++++|...+...++.. +.+...+..|..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 122233333333333344556666666544433333222 122334556788888888888888764 235677778888
Q ss_pred HHHhcCChhhHHHHHhcCCC--CCc---chHHHH------------HHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHH
Q 001852 373 MYSEAGRSEDAKFVFQEMSE--RDS---VSWNSL------------VASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTS 435 (1004)
Q Consensus 373 ~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 435 (1004)
.|.+.|+.++|+..|++..+ |+. ..|..+ ...+.+.|++++|...|++...... .+...+..
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~ 390 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLG 390 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 88888888888888887654 221 123222 2345677888888888888776521 23334445
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCC------------eechhhhh
Q 001852 436 ALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRD------------TVTWNALI 503 (1004)
Q Consensus 436 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------------~~~~~~li 503 (1004)
+-..+...|++++|.+.+..+++.. +.+...+..+...|. .++.++|..+++.++... ...+..+.
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5566667777777777777777653 223445555666554 346677777776655221 11233445
Q ss_pred HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCCh
Q 001852 504 GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL 583 (1004)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 583 (1004)
..+...|++++|++.|++.++. .|+ +..++..+...|.+.|++
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~--~P~-----------------------------------~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLAL--DPG-----------------------------------SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------------CHHHHHHHHHHHHHcCCH
Confidence 5566677777777777776653 232 222334566667777777
Q ss_pred hhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 584 NSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 584 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++|...|+++.+ .+...+..+...+.+.|+.++|+..++++......++...+.. .+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l- 571 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL- 571 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH-
Confidence 777777776532 2444555555556667777777777776543211111100000 00
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
.......+.+.|...|+.++|.++++.- ..+...+..+...+.+.|+.++|++.|++.++. .| +...+..+
T Consensus 572 ------~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~l 643 (1157)
T PRK11447 572 ------QSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGL 643 (1157)
T ss_pred ------hhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 0011234567788899999999999843 235567788899999999999999999999985 55 67789999
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCC---C----CHHHHHHHHHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVT---P----NDLVWRSLLAS 810 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~---p----~~~~~~~ll~~ 810 (1004)
..++...|+.++|++.++...+ ..|+ ...+..+..++.+.|++++|.++++++ +.. | +..++..+...
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 9999999999999999998764 3443 456677888999999999999999886 222 2 23467777888
Q ss_pred HHhcCCHHHHHHHHHHHHh---cCCCCCCC
Q 001852 811 SKIHGNVELAKKAAEHLFE---LDPSDDSS 837 (1004)
Q Consensus 811 ~~~~g~~e~a~~~~~~~~~---l~p~~~~~ 837 (1004)
+...|+.+.|+..+++++. +.|..+..
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999986 55666664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-20 Score=226.57 Aligned_cols=619 Identities=10% Similarity=0.012 Sum_probs=360.4
Q ss_pred cCCChhhHHHhhccCC--CC-chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHH
Q 001852 174 TYGHINKARRVFEEMP--VR-NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLF 250 (1004)
Q Consensus 174 ~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 250 (1004)
..|++++|...|++.. .| +...+..+...|.+.|++++|+..+++..+. .|+...|..++... ++...|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 3477777777777654 23 3456677777777777777777777777664 34444444433222 555566666
Q ss_pred HHHHHHhcCCCChhhhhHHHHH--------hhCCCCHHHHHHHHhhCCCCC--cchHHHH-HHHHHhCCCchhHHHHHHH
Q 001852 251 LGHVIKFGFHYTVPVANSLISM--------FGNFGSVKEARCIFDSMHVRD--TISWNSM-ISVYSHSGLCDQSLKCFHW 319 (1004)
Q Consensus 251 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~d--~~~~~~l-i~~~~~~g~~~~A~~l~~~ 319 (1004)
++.+.+.... +..++..+... |.+.+...++++ .+...|+ ....... ...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 6666555422 22223333332 444444444444 2222222 2222222 4555555555555555555
Q ss_pred HHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCChhhHHHHHhcCCCCCcchH
Q 001852 320 MRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSE-AGRSEDAKFVFQEMSERDSVSW 398 (1004)
Q Consensus 320 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~ 398 (1004)
+.+.+.. +..-...|-..|.. .++ +.+..+++...+.|...+
T Consensus 208 L~k~~pl------------------------------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~ 250 (987)
T PRK09782 208 ARQQNTL------------------------------------SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSR 250 (987)
T ss_pred HHhcCCC------------------------------------CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHH
Confidence 5554322 12223333334444 233 455555443333455555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhcCCc-CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Q 001852 399 NSLVASHVQDEKYIDALKIFSNMLQKQRL-VNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDN-LIVGNALVSMYA 476 (1004)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~ 476 (1004)
..+...|.+.|+.++|.++++++...-.. |+..++.-++.-...... .+..-+.. .+.++ ....-.++..+.
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPV--QALANYTV----QFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchh--hhccchhh----hhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555433222 344333333322222110 00000000 00000 112223355556
Q ss_pred ccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCC-CC---ChhhHHHHHHhhcCCcchhhccc
Q 001852 477 KSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGT-PM---NYITFANVLGACLNPGDLLIHGM 552 (1004)
Q Consensus 477 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~~~t~~~ll~a~~~~~~~~~~~~ 552 (1004)
+.++++.|.++.+.-+ .+. ..-.-..+....+...++...++.|.+... .+ +..||..+-. +..+++.
T Consensus 325 ~~~~~~~~~~~~~~~~-~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~------~~~~~a~ 396 (987)
T PRK09782 325 KEGQYDAAQKLLATLP-ANE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQN------GQSREAA 396 (987)
T ss_pred hccHHHHHHHHhcCCC-cch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------ccHHHHH
Confidence 6666665555533111 111 110001111222444455555555544310 11 1112221111 2333344
Q ss_pred chhhhhhhh-c-ccCchhHHhHHhhHHHHcCChhh---H-------------------------HHHHhcCCC---C--C
Q 001852 553 PIHTHIVLT-G-FESHKYVQNSLITMYAKCGDLNS---S-------------------------NYIFEGLAE---K--N 597 (1004)
Q Consensus 553 ~i~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~~---A-------------------------~~~f~~~~~---~--~ 597 (1004)
+++...... + -..+..+.+-|+..|.+.+.+.. + ...+..... . +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 443333321 0 01123334445555555544221 1 112222211 2 5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...|..+...+.. ++.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 6678888888877 8999999988887764 577655444445556899999999999887554 3444556677888
Q ss_pred HHhcCChhhHhhhcCCCCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVDRPRLSWNIL---ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+.+.|+.++|...+++....++..++.. .......|++++|+..|++.++ ..|+...+..+..++.+.|++++|+.
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988775444333333 3333455999999999999998 57888899999999999999999999
Q ss_pred HHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 755 YYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
.|++... +.|+ ...+..+..+|...|++++|.+.+++. ...|+ +.+|..|..++...|+++.|+..++++++++
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999975 3554 477888999999999999999999886 56665 5589999999999999999999999999999
Q ss_pred CCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 832 PSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 832 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
|+++.+....+++.....+++.+.+-.+.
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-19 Score=216.66 Aligned_cols=675 Identities=10% Similarity=-0.005 Sum_probs=405.9
Q ss_pred HccCChhHHHHHhcccC--CC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHH
Q 001852 71 FKFGCLGYARYVFDKMG--DK-NDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGI 147 (1004)
Q Consensus 71 ~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 147 (1004)
...|++++|...|+... .| +...+..+...|.+.|++++|+..+++..+. .|+...|..++... +... .+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~-kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEV-KSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccCh-hHH
Confidence 34589999999988753 23 4667888889999999999999998888764 45544444444222 3333 444
Q ss_pred HHHHHHhhcCCCCCcchhhhHHHH--------hhcCCChhhHHHhhccCC-CCchh-HHHHHHHHHHhCCCchHHHHHHH
Q 001852 148 QVHGFSVKVGLLCDVFVGTSLLHF--------YGTYGHINKARRVFEEMP-VRNVV-SWTSLMVAYLDNGSPIEVVDLYR 217 (1004)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~-~~~~~-~~~~li~~~~~~g~~~~a~~l~~ 217 (1004)
.+++.+.+.... +..++..+... |.+.+....|++ ..... .|+.. ..-.+...|.+.|++++|++++.
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 555555544321 22233333332 555444444444 21111 11222 22222555555566666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhC-CCCHHHHHHHHhhCCCCCcch
Q 001852 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGN-FGSVKEARCIFDSMHVRDTIS 296 (1004)
Q Consensus 218 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~d~~~ 296 (1004)
++.+.+. .+......|-.+|.. .++ +.+..+++...+.|...
T Consensus 207 ~L~k~~p------------------------------------l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 207 EARQQNT------------------------------------LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred HHHhcCC------------------------------------CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 6555432 112223333334444 244 66666655433446666
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCc-hHHHHHHHHHH
Q 001852 297 WNSMISVYSHSGLCDQSLKCFHWMRHVGQE-INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSN-VWVCNTLLAMY 374 (1004)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 374 (1004)
+..+...|.+.|+.++|.++++++...-.. |...++.-++.-..... ..+..-+. + .+.++ ....-.++..+
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~---~-~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYT---V-QFADNRQYVVGATLPVL 323 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchh---h-hhHHHHHHHHHHHHHHH
Confidence 777777777777777777777776543322 44444444433322221 00110000 0 01111 12233457788
Q ss_pred HhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC-cC---CHhhHHHHHHhhcCCCChHHHH
Q 001852 375 SEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR-LV---NYVTFTSALAACSDPGFVVQGK 450 (1004)
Q Consensus 375 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~~~t~~~ll~a~~~~~~~~~a~ 450 (1004)
.+.++++.+.++.+ ....+. ..-.-..+....+...++....+.|.+... .+ +..||. ....|+.++|.
T Consensus 324 ~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~-----~~~~~~~~~a~ 396 (987)
T PRK09782 324 LKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ-----LMQNGQSREAA 396 (987)
T ss_pred HhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHHcccHHHHH
Confidence 88888887777744 222222 111111222234566666666666665411 11 112222 23445666666
Q ss_pred HHHHHHHHh-C-CCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCC
Q 001852 451 IIHALVITM-G-LHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTP 528 (1004)
Q Consensus 451 ~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 528 (1004)
+++...... + -..+....+-|+..|.+.+.+....++..-.+..+...- +.-.|+..++.........
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---- 466 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVR---- 466 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHH----
Confidence 666655542 1 122444555666666666664444333322221111100 1111222221111111111
Q ss_pred CChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccC--chhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHH
Q 001852 529 MNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFES--HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIA 606 (1004)
Q Consensus 529 p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~ 606 (1004)
+... -++ +...+..+..++.. |+.++|...|.+.....+..|+.+..
T Consensus 467 -----------al~~-------------------~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 467 -----------LLGD-------------------MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred -----------hccc-------------------CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 0000 012 34556666666766 78888998777665443345555544
Q ss_pred HH--HhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCCh
Q 001852 607 AN--ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEI 684 (1004)
Q Consensus 607 ~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 684 (1004)
++ .+.|++++|+..|+++... .|+...+..+..++...|+.++|...+...++... .+...+..+.....+.|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCH
Confidence 44 5899999999999987653 45555566666677889999999999998887652 2333333344444456999
Q ss_pred hhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 685 GDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 685 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
++|...+++... |+...|..+...+.+.|+.++|++.|++.++. .| +...+..+..++...|+.++|+..|++..+
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998774 67788999999999999999999999999995 66 566778888899999999999999999976
Q ss_pred hcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCe
Q 001852 762 EFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSY 838 (1004)
Q Consensus 762 ~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~ 838 (1004)
+.| +...+..+..++.+.|++++|+..+++. ...|+. .+............+++.+.+.+++...++|+.. +.
T Consensus 672 ---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~ 747 (987)
T PRK09782 672 ---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IG 747 (987)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hc
Confidence 345 3477788999999999999999999887 777875 4666667777788899999999999999999888 78
Q ss_pred ehhhhHhhhcCCch
Q 001852 839 VLYSNVCAATGRWD 852 (1004)
Q Consensus 839 ~~l~~~y~~~g~~~ 852 (1004)
...+.++...+++-
T Consensus 748 ~~~g~~~~~~~~~~ 761 (987)
T PRK09782 748 LRSGAMSTANNNVG 761 (987)
T ss_pred cccchHhhhccccc
Confidence 88888887777653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=182.59 Aligned_cols=444 Identities=12% Similarity=0.086 Sum_probs=343.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHH-hhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001852 398 WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALA-ACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYA 476 (1004)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 476 (1004)
-..+..-..+.|++++|++.-...-++. |+..--..++. .+.+..+.+...+.-...++. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3445556667788888887655443332 21111111222 233333333333322222222 2334667888999999
Q ss_pred ccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccc
Q 001852 477 KSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMP 553 (1004)
Q Consensus 477 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 553 (1004)
..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.-+.+..+.+.++..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998764 3 467888899999999999999999988877 678777665554444444355666666
Q ss_pred hhhhhhhhcccC-chhHHhHHhhHHHHcCChhhHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 554 IHTHIVLTGFES-HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN---SVTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 554 i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
.+-.+++. .| -..+|+.|...+-..|++..|..-|++..+-| ..+|-.|...|...+.+++|+..|.+... .
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 55555543 23 23567888899999999999999999887654 56888899999999999999999988876 4
Q ss_pred CCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--C-ChhHHHHH
Q 001852 630 YFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--R-PRLSWNIL 705 (1004)
Q Consensus 630 ~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~l 705 (1004)
.|+. +.+..+-..|.+.|.++.|..-+...+..... -+..|+-|..++-..|++.+|...+.+... + -..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 6654 45666666778899999999999888775422 356789999999999999999999998764 3 35688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcC
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSG 783 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g 783 (1004)
...|...|+.++|..+|.+.++ +.| =...++.|.+.|-..|++++|+..++... .|.|+. +.|+.|...|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999998 567 45689999999999999999999999886 688986 88999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 784 RLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 784 ~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
+.++|.+.+.+. .+.|.- .....|...++..||+++|+..++.+++++|+.+.+|..|.....-...|.+-.
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 999999999887 678874 488999999999999999999999999999999999999988887788888843
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-16 Score=172.66 Aligned_cols=696 Identities=12% Similarity=0.023 Sum_probs=402.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCCC
Q 001852 112 GFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVR 191 (1004)
Q Consensus 112 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 191 (1004)
.++..|...|+.|+.+||.+++..|+..|+.+ .+. ++..|.-..+.....+++.++.+....++.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdie-aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIE-AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCc-ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 56778889999999999999999999999987 555 9999999999899999999999999999988776 68
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHH-H-------HHcCCCCChhhHHHHHHHhcccCChhh--------hHHHHHHHH
Q 001852 192 NVVSWTSLMVAYLDNGSPIEVVDLYRY-M-------RREGVCCNENTFAAVITSCGLTENDLL--------GYLFLGHVI 255 (1004)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~a~~l~~~-m-------~~~g~~p~~~t~~~ll~~~~~~~~~~~--------a~~~~~~~~ 255 (1004)
...+|+.+..+|.+.|+... ++..++ | ...|+.-...-|-..++.|...- .+. -+.+++..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l-pda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSL-PDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccc-hhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998754 222222 2 12243333333333333332211 111 122334444
Q ss_pred HhcCCCChhhhhHH----HHHhhC-CCCHHHHHHHHhhCC-CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCh
Q 001852 256 KFGFHYTVPVANSL----ISMFGN-FGSVKEARCIFDSMH-VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINS 329 (1004)
Q Consensus 256 ~~g~~~~~~~~~~l----i~~~~~-~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 329 (1004)
+.+....+..++.= +.-... ...+++-........ .++..+|.+.+..-..+|+.+.|..++.+|.+.|.+.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 44421111111111 111111 122333333333333 379999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCC
Q 001852 330 TTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDE 409 (1004)
Q Consensus 330 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 409 (1004)
+-|..+|-+ .++......+..-|...|+.|+..|+.-.+-...+.|....+....+.-.--....+..+..+...+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 999999876 78888999999999999999999999887777776555333222211100001122222222211111
Q ss_pred CH-----HHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHccCCh
Q 001852 410 KY-----IDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLH---DNLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 410 ~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~Li~~y~~~g~~ 481 (1004)
+. .-....+.+..-.|+.-....| ++..-....|.-+...++-+.+..--.. .++..+..+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~---------- 385 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL---------- 385 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH----------
Confidence 11 1111222222222333222222 2222222355555555555554322111 112222222
Q ss_pred HHHHHHHhcCCCCCee-chhhhhHHhhh---CCChhHHHHHHHHHHhcCCCCChh-----------------h-------
Q 001852 482 SEAKQVFRIMPKRDTV-TWNALIGGHSE---KEEPDKALKAYKRMREEGTPMNYI-----------------T------- 533 (1004)
Q Consensus 482 ~~A~~~f~~m~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-----------------t------- 533 (1004)
+.+.|.+...+... .++ .-.+... .....+..++.... .||.. +
T Consensus 386 --lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 386 --LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred --HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 33444444433211 111 1111111 11112222222221 12111 0
Q ss_pred ----HHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC------CHhHHHH
Q 001852 534 ----FANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK------NSVTWNA 603 (1004)
Q Consensus 534 ----~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~ 603 (1004)
-..++-.|.+. .......+.-+.....- =...|..||+......+.+.|..+.+++..+ |..-+..
T Consensus 458 irdi~~ql~l~l~se-~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSE-YNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 11111122111 11111111111111111 1256789999999999999999999999877 4456888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC--hhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhc
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHTGVYFD--RFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKC 681 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 681 (1004)
+.+.+.+.+....+..++.+|.+.-..-+ ..++--++...+..|..+.-+++++.+...|+..+ .-|+....+.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrk 609 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRK 609 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeec
Confidence 89999999999999999999987533333 45666777888889999999999999988887653 3344556677
Q ss_pred CChhhHhhhcCCCCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHH
Q 001852 682 GEIGDVLRIAPQPVD------RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
++...|+++++.... ++...|..++.- ....+.+++..+-.... .|.+.|.+.+|.++
T Consensus 610 dd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k-e~td~~qk~mDls~~iq---------------~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 610 DDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK-ETTDSPQKTMDLSIPIQ---------------KFEKLGSCVDAGDI 673 (1088)
T ss_pred cchhhhhhcchHHHHHhcCChHHHHHHHHHHHh-hccccHHHHHhhcchhH---------------HHHhcccccchhhc
Confidence 888888888876542 223333333220 01112222222211111 13334444443333
Q ss_pred HHHh-----------HhhcCCCC---------CCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001852 756 YNTM-----------TTEFGVPA---------GIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 756 ~~~m-----------~~~~~~~p---------~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g 815 (1004)
.+.= .....+.| ...+..-+...|.+.|+++.|..+..++++.|.......|+...+.+.
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhc
Confidence 2210 00000111 012223366789999999999999999999999999999999988775
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCCCeehhhh--HhhhcCCchH-HHHHHHHHhhC
Q 001852 816 ---NVELAKKAAEHLFELDPSDDSSYVLYSN--VCAATGRWDD-VENVRRQMGWN 864 (1004)
Q Consensus 816 ---~~e~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~-a~~~~~~m~~~ 864 (1004)
|+.++...-+++-++.|..+..--..-. ..+.+++..+ |.+.....++.
T Consensus 754 ~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 754 EEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred hhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHc
Confidence 7788888889999887766553222222 3445566554 44566655554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=190.78 Aligned_cols=300 Identities=13% Similarity=0.061 Sum_probs=243.6
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC---hhhHHHHHHHHhhhh
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD---RFSLSEGLAAAAKLA 647 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~ 647 (1004)
...+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567789999999999988654 456888999999999999999999999987543322 235667777888899
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC--------hhHHHHHHHHHHhcCCHHHHH
Q 001852 648 VLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP--------RLSWNILISVFARHGYFQKAI 719 (1004)
Q Consensus 648 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 719 (1004)
+++.|..++..+.+.. +.+...++.++.+|.+.|++++|.+.|+.+.+.+ ...|..++..+...|+.++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988753 3467788999999999999999999998876422 124567788889999999999
Q ss_pred HHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--CchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 720 ETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 720 ~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
+.|+++.+. .| +..++..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999985 45 4567888889999999999999999999864 343 356788999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhh--cCCchHHHHHHHHHhhCCCccCCccc
Q 001852 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA--TGRWDDVENVRRQMGWNKIKKKPACS 873 (1004)
Q Consensus 796 ~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g~s 873 (1004)
...|+...+..+...+...|+.+.|...++++++..|+++....++...+.. .|+.+++..+.+.|.+++++..|.+.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 5678877778888899999999999999999999999987654444433322 56999999999999999999999855
Q ss_pred EEEeC
Q 001852 874 WVKSK 878 (1004)
Q Consensus 874 ~i~~~ 878 (1004)
....+
T Consensus 357 c~~cg 361 (389)
T PRK11788 357 CRNCG 361 (389)
T ss_pred CCCCC
Confidence 43333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=173.60 Aligned_cols=410 Identities=11% Similarity=0.091 Sum_probs=309.1
Q ss_pred hcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCC---CeechhhhhHHhhhCCChhHHH
Q 001852 440 CSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR---DTVTWNALIGGHSEKEEPDKAL 516 (1004)
Q Consensus 440 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 516 (1004)
..+.|++++|++.-...-... +.+....-.+-..+....+++....--....+. -..+|..+...+-..|+.++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 345677777766443332221 122222222334455555555543322222222 3457888999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCch-hHHhHHhhHHHHcCChhhHHHHHhcCCC
Q 001852 517 KAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHK-YVQNSLITMYAKCGDLNSSNYIFEGLAE 595 (1004)
Q Consensus 517 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 595 (1004)
.+++.|.+ .+|+.+--.+-+.+|....++.+.+.+.+...++. .|+. .+.+-+.......|++++|...+.+..+
T Consensus 137 ~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 99999998 56765544344444444448888888887777654 3433 2334456666778999999999887654
Q ss_pred C---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhH
Q 001852 596 K---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL-DPFV 670 (1004)
Q Consensus 596 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~ 670 (1004)
. -.+.|+.|...+-..|+..+|++-|++... +.|+- ..|..+=..+...+.++.|...+..... ..| ...+
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a 288 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVA 288 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhh
Confidence 3 467999999999999999999999999876 56653 2344444455555555666555544433 333 4566
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhcc
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHG 746 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~ 746 (1004)
+.-|.-.|-..|.++-|+..+++..+ |+ ..+||.|..++-..|++.+|+..+.+.+.. .| .....+.|..++...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHh
Confidence 77788889999999999999999875 44 478999999999999999999999999984 55 445788999999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
|.+++|..+|.... .+.|.. ...+.|..+|-..|++++|..-+++. .++|... .+..+...+...|++..|.+.
T Consensus 368 ~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999886 456654 67788999999999999999999887 7899854 899999999999999999999
Q ss_pred HHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 824 AEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+++++..+|.-+.++..|+.+|-.+|+..+|..-++...
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=183.49 Aligned_cols=302 Identities=13% Similarity=0.093 Sum_probs=188.0
Q ss_pred HcCCCHHHHHHHHHHhhhcCCcCC-HhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHccCCh
Q 001852 406 VQDEKYIDALKIFSNMLQKQRLVN-YVTFTSALAACSDPGFVVQGKIIHALVITMGLHD---NLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~ 481 (1004)
...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..++..+++.+..+ ...++..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444444444444444442 122 2233444444444445555555444444432111 124577888899999999
Q ss_pred HHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh
Q 001852 482 SEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI 558 (1004)
Q Consensus 482 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~ 558 (1004)
++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 999999998864 45678889999999999999999999999875432211100
Q ss_pred hhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhh
Q 001852 559 VLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFS 635 (1004)
Q Consensus 559 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 635 (1004)
...+..+...|.+.|++++|...|+++.+. +..++..+...|.+.|++++|+++|+++...+..+...+
T Consensus 180 --------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 180 --------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 112345677788889999999999887542 466788888899999999999999999886532222344
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHh--
Q 001852 636 LSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFAR-- 711 (1004)
Q Consensus 636 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~-- 711 (1004)
+..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++.. |+...++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 5566666667777777777666665543 3334445566666666666666666655442 455555555554442
Q ss_pred -cCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCH
Q 001852 712 -HGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLV 749 (1004)
Q Consensus 712 -~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~ 749 (1004)
+|+.++|+.+|++|.+. ++|+.. .+|++.|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 44566666666666654 444433 335555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=181.89 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=143.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 645 KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 645 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
..|++++|...+..+++.. +.....+..+...|...|++++|...|++... .+...|..+...|...|++++|+..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444444443322 11233455566666667777777776665542 3456777777888888888888888
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP 799 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p 799 (1004)
|++.++. .| +...+..+..++...|++++|+..|++..+.+ +.+...|..++.+|...|++++|.+.+++. .+.|
T Consensus 422 ~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 422 YQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 8888774 44 55666677777888888888888888876532 223466777788888888888888887774 3444
Q ss_pred CH-------HHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 800 ND-------LVW-RSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 800 ~~-------~~~-~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+. ..| +..+..+...|+++.|+..++++++++|++...+..|+.+|...|++++|.+..+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 31 111 1222223335888888888888888888888888888888888888888888766544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-13 Score=150.78 Aligned_cols=553 Identities=12% Similarity=0.039 Sum_probs=341.1
Q ss_pred HHHHHHHHhhCCCC--CcchHHHHHHHH--HhCCCchhHHHHHHHHHHc--CCCCChhhHHHHHHhhcCCCChhhHHHHH
Q 001852 279 VKEARCIFDSMHVR--DTISWNSMISVY--SHSGLCDQSLKCFHWMRHV--GQEINSTTFSTLLSACGSVDNLKWGRGIH 352 (1004)
Q Consensus 279 ~~~A~~~f~~m~~~--d~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 352 (1004)
++.|...|...... +.+ .-.+..++ ...+++..|+.+|...... ..+||...- +-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 46666666665432 211 11222222 2356677777777775433 233443221 113344667777777777
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcC---ChhhHHHHHhcCC---CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 353 GLAVKLALNSNVWVCNTLLAMYSEAG---RSEDAKFVFQEMS---ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 353 ~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
..+++... .++..+-.|--+-.... .+..+..++...- ..|++..+.|-.-|.-.|++..++.+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 76666532 11112111111111111 2333444443332 24677777777777777888777777777665431
Q ss_pred c--CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-Ceechhh
Q 001852 427 L--VNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNA 501 (1004)
Q Consensus 427 ~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 501 (1004)
. .-...|-.+-+++-..|+++.|...+-...+..-......+--|..+|.+.|+++.|...|+.+.+ | +..+-..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 112235556667777788888877777666553222233344577888888888888888887753 2 3334444
Q ss_pred hhHHhhhCC----ChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchh----hhhhhhcccCchhHHhHH
Q 001852 502 LIGGHSEKE----EPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIH----THIVLTGFESHKYVQNSL 573 (1004)
Q Consensus 502 li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~----~~~~~~g~~~~~~~~~~L 573 (1004)
|-..|+..+ ..++|..++.+..+.- ..|...|..+-..+-.. +.......+ ..+...+-.+.+.+.|.+
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~--d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT--DPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 445555554 3345555555444421 22333333333222221 111112222 234455666788899999
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC-------CH-----h-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK-------NS-----V-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
...+...|.++.|...|++...+ |. + +--.+...+-..++++.|.+.|...... .|.-++-..=+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999876432 22 1 1222455667778999999999999874 45433222212
Q ss_pred HHHh-hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCC----CCC-CChhHHHHHHHHHHh---
Q 001852 641 AAAA-KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ----PVD-RPRLSWNILISVFAR--- 711 (1004)
Q Consensus 641 ~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~----~~~-~~~~~~~~li~~~~~--- 711 (1004)
.+.+ ..+.+.++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+. ... +|..+.-+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 1111 2355667777776665532 44667777788889888888888884443 332 466666666664432
Q ss_pred ---------cCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc
Q 001852 712 ---------HGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 712 ---------~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 782 (1004)
.+..++|+++|.+.+...+-|...=+++.-.+++.|++.+|+.+|.+..+. ..-....|..++.+|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHH
Confidence 345678999999998853338888888888999999999999999999874 334456677889999999
Q ss_pred CChHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 783 GRLAEAETFINKM--P--VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 783 g~~~eA~~~i~~m--~--~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
|++-.|.++++.. . -+.+..+..-|..++...|.+.+|..++..++.+.|.|+..-..++-
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999774 2 23456688889999999999999999999999999999885444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-13 Score=151.54 Aligned_cols=544 Identities=14% Similarity=0.084 Sum_probs=298.4
Q ss_pred hhhHHHhhccCC--CCchhHHHHHHHHH--HhCCCchHHHHHHHHHHHc--CCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 178 INKARRVFEEMP--VRNVVSWTSLMVAY--LDNGSPIEVVDLYRYMRRE--GVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 178 ~~~A~~~f~~m~--~~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
++.|.+.|.... .|+-+. -.+..++ ...+++..|+.+|...... ..+||... .+-..+...++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 466666666554 222211 1122222 2356777777777775442 34444422 1223344666777777666
Q ss_pred HHHHHhcCCCChhhhhHHHHHhhC---CCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 001852 252 GHVIKFGFHYTVPVANSLISMFGN---FGSVKEARCIFDSMH---VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ 325 (1004)
Q Consensus 252 ~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 325 (1004)
....+... .++.++-.|--.-.. ...+..+..++...- ..|.+..|.|-+.|.-.|+++.++.+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 66665432 112222111111111 122334444444332 23667777777777778888888887777765431
Q ss_pred C--CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHH
Q 001852 326 E--INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNS 400 (1004)
Q Consensus 326 ~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~ 400 (1004)
. .-...|-.+-+++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+-..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 1123466666777777888888777766665543222334455677788888888888887776542 3334444
Q ss_pred HHHHHHcCC----CHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHH----HHHhCCCCchHHHHHHH
Q 001852 401 LVASHVQDE----KYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHAL----VITMGLHDNLIVGNALV 472 (1004)
Q Consensus 401 li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~Li 472 (1004)
+...|...+ ..+.|..++.+..+.- .-|...|..+-..+- .++......++.. +...+-.+.+.+.|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 455555543 3345555554444321 123333333333332 2333333444433 33445556777777777
Q ss_pred HHHHccCChHHHHHHHhcCCC-------CCee-------chhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 001852 473 SMYAKSGMMSEAKQVFRIMPK-------RDTV-------TWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVL 538 (1004)
Q Consensus 473 ~~y~~~g~~~~A~~~f~~m~~-------~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 538 (1004)
..+...|+++.|...|+.... +|.. -|| +...+-..++.+.|.+.|+...+. .|+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~-------- 528 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPG-------- 528 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--Cch--------
Confidence 777778888887777766542 1221 111 222233345666666666666553 222
Q ss_pred HhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHc-------CChhhHHHHHhcCCC---CCHhHHHHHHHHH
Q 001852 539 GACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKC-------GDLNSSNYIFEGLAE---KNSVTWNAMIAAN 608 (1004)
Q Consensus 539 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-------g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 608 (1004)
.|++|.+. +...+|...+....+ .|+..|+-+...|
T Consensus 529 ----------------------------------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 529 ----------------------------------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred ----------------------------------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 23333333 455566666665543 3677777777777
Q ss_pred HhcCChHHHHHHHHHhhhcC-CCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhH
Q 001852 609 ALHGQGEEVLKLLVKMRHTG-VYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDV 687 (1004)
Q Consensus 609 ~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 687 (1004)
.+...+..|.+-|....+.- ..+|..+..+|-+.|... +...-- ++ -...+..+.|
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~~r--n~---------ek~kk~~~KA 631 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA------------LHNPSR--NP---------EKEKKHQEKA 631 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH------------hccccc--Ch---------HHHHHHHHHH
Confidence 77777777777655554321 224544443333322110 000000 00 1122445566
Q ss_pred hhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 001852 688 LRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFG 764 (1004)
Q Consensus 688 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 764 (1004)
+..|.++.. +|..+-|.+...++..|++.+|..+|.+..+...-+.-+|..+...|...|++-.|++.|+...+++.
T Consensus 632 lq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666665543 35556666777777777777777777777776333444577777777777777777777777777666
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 765 VPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 765 ~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
-.-+.+...||..++-++|++.+|.+.....
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556677777777777777777777766554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-15 Score=178.63 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=140.5
Q ss_pred HHhcCChhhHhhhcCCCCCCC---hh-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-----HhHHHHHHHHHhccCC
Q 001852 678 YGKCGEIGDVLRIAPQPVDRP---RL-SWNILISVFARHGYFQKAIETFDEMLKYVKPD-----HVTFVSLLSACNHGGL 748 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-----~~t~~~ll~a~~~~g~ 748 (1004)
+...|+.++|+..|+++...+ +. .--.+...|...|++++|+..|+++.+. .|. ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH-PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhccc
Confidence 345688888888888876532 11 1122466788889999999999988764 332 2345566677888999
Q ss_pred HHHHHHHHHHhHhhcC----------CCCCC---chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 001852 749 VDKGLQYYNTMTTEFG----------VPAGI---EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKI 813 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~----------~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~ 813 (1004)
+++|..+++.+.+... -.|+. ..+..++.++...|++++|++.++++ ...|+ ...|..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999988876421 11221 23456778888999999999999886 34454 5588889888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.|+.+.|+..++++++++|+++..++.++.++...|+|++|..+.+.+.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-14 Score=173.69 Aligned_cols=247 Identities=14% Similarity=0.026 Sum_probs=173.0
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
++.+...|...|++++|...|+...+. +..+|..+...+...|++++|+..|++..+. .|
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p--------------- 396 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NS--------------- 396 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC---------------
Confidence 344455555566666666666554322 2345555555555666666666666555442 22
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.+..++..+...|...|++++|...|++... .+...|..+...+.+.|+.++|+..|+
T Consensus 397 -------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 397 -------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2455677777888888888888888887653 345678888999999999999999999
Q ss_pred HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC--ch------HHHHHHHHHhcCChHHHHHHHHhC
Q 001852 724 EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI--EH------CVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 724 ~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~------y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+.++..+.+...+..+..++...|++++|+..|+...+. .|+. .+ +.....++...|++++|.+++++.
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 998853336778888999999999999999999998753 3321 11 111223344579999999999885
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 796 -PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 796 -~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+.|+.. +|..|...+...|+++.|...+++++++.+.... ......|.++.+++...++
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQE 596 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 6667654 7888999999999999999999999999876433 1123356677777665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=175.56 Aligned_cols=259 Identities=12% Similarity=0.050 Sum_probs=180.1
Q ss_pred hHHhhHHHHcCChhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhh
Q 001852 571 NSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLA 647 (1004)
Q Consensus 571 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 647 (1004)
..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++++... .|+.......+..+...|
T Consensus 114 ~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g 191 (656)
T PRK15174 114 LLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKS 191 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcC
Confidence 4455556666666666666665543 24556667777777777777777777766553 233322222233456667
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHH----HHH
Q 001852 648 VLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQK----AIE 720 (1004)
Q Consensus 648 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~ 720 (1004)
++++|...+..+.+....++......+...|.+.|+.++|...|++... .+...+..+...|...|+.++ |+.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 7777777776665554333334444556677778888888888776653 345677788888888888875 788
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PV 797 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~ 797 (1004)
.|++.++. .| +...+..+..++...|++++|+.++++..+. .|+ ...+..+..+|.+.|++++|.+.++++ ..
T Consensus 272 ~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888874 55 5667888888899999999999999888753 444 355666788888999999999888877 45
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 798 TPNDLVWR-SLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 798 ~p~~~~~~-~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.|+...|. .+..++...|+.+.|+..++++++.+|++.
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 67654443 345567788999999999999999999875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-14 Score=176.04 Aligned_cols=392 Identities=10% Similarity=0.008 Sum_probs=256.5
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCC
Q 001852 368 NTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPG 444 (1004)
Q Consensus 368 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 444 (1004)
.-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++.... .
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~----------------- 79 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--E----------------- 79 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-----------------
Confidence 3444445556666666666665543 12233566666666666666666666665442 1
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHH
Q 001852 445 FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKR 521 (1004)
Q Consensus 445 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 521 (1004)
+.+......+...+...|++++|...+++..+ | +.. |..+...+...|+.++|+..+++
T Consensus 80 -----------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 80 -----------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred -----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 22334445566666677777777777766542 2 333 66666677777777777777777
Q ss_pred HHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHh--
Q 001852 522 MREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSV-- 599 (1004)
Q Consensus 522 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~-- 599 (1004)
..+. .|+... +...+...+.+.|..+.|...++.... ++.
T Consensus 142 al~~--~P~~~~-----------------------------------~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~ 183 (765)
T PRK10049 142 ALPR--APQTQQ-----------------------------------YPTEYVQALRNNRLSAPALGAIDDANL-TPAEK 183 (765)
T ss_pred HHHh--CCCCHH-----------------------------------HHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH
Confidence 7663 333222 223344555566777777777776654 111
Q ss_pred ------HHHHHHHHHH-----hcCCh---HHHHHHHHHhhhc-CCCCChh-hHHH----HHHHHhhhhhHHHHHHHHHHH
Q 001852 600 ------TWNAMIAANA-----LHGQG---EEVLKLLVKMRHT-GVYFDRF-SLSE----GLAAAAKLAVLEEGHQLHGLA 659 (1004)
Q Consensus 600 ------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~~----ll~a~~~~~~~~~a~~~~~~~ 659 (1004)
....++..+. ..+++ ++|++.++.+... ...|+.. .+.. .+.++...++.++|...+..+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1112222221 12233 6788888888754 2333322 1111 134456678888898888888
Q ss_pred HHhCCC-CChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC-
Q 001852 660 TKLGFD-LDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP-------RLSWNILISVFARHGYFQKAIETFDEMLKYVK- 730 (1004)
Q Consensus 660 ~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~- 730 (1004)
.+.+.+ |+ .....+.+.|...|++++|+..|+++...+ ...+..+..++...|++++|+++++++.+..+
T Consensus 264 l~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 264 KAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 776532 22 122335778999999999999988765422 23456677788999999999999999987422
Q ss_pred -----------CCH---hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 731 -----------PDH---VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 731 -----------pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
|+. ..+..+..++...|+.++|++.++++... .+-+...+..++.++.+.|+.++|++.+++.
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 221 23456777889999999999999999764 3334577888999999999999999999987
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 796 PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 796 ~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
...|+. ..+..+.......|+++.|+..++++++.+|+++..
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 567774 477777777888899999999999999999999853
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=173.06 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=266.8
Q ss_pred HccCChHHHHHHHhcCCCC------CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhh
Q 001852 476 AKSGMMSEAKQVFRIMPKR------DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLI 549 (1004)
Q Consensus 476 ~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 549 (1004)
.|..+++.---.|..-+++ +..-...++..+.+.|++++|+.+++..+.....+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~------------------ 77 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD------------------ 77 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh------------------
Confidence 3455565555555555432 2223344567788899999999999988875322221
Q ss_pred cccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001852 550 HGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 550 ~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 626 (1004)
....++......|++++|...|+++... +...|..+...+.+.|++++|+..|++...
T Consensus 78 -------------------~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 78 -------------------LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred -------------------HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223444455689999999999988543 667899999999999999999999999987
Q ss_pred cCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC----ChhH
Q 001852 627 TGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR----PRLS 701 (1004)
Q Consensus 627 ~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~~ 701 (1004)
. .|+. ..+..+...+...|+.++|...+..+......+.. .+..+ ..+.+.|++++|...++++... +...
T Consensus 139 l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 139 A--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred h--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 4 5654 45666777889999999999999888776544333 33333 3478899999999999886543 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHH----HHHHHHHhHhhcCCCCC-CchHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDK----GLQYYNTMTTEFGVPAG-IEHCVCII 776 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~-~~~y~~lv 776 (1004)
+..+...+...|+.++|++.|+++.+..+.+...+..+..++...|++++ |...|++..+ +.|+ ...+..++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg 291 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHH
Confidence 45567788999999999999999998533366778889999999999986 8999999875 3454 47788899
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 777 DLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
.+|.+.|++++|...+++. ...|+ ..++..|..++...|+++.|...++++++.+|+++..+..++.+|...|++++|
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 45666 457888888899999999999999999999999987777789999999999999
Q ss_pred HHHHHHHhhC
Q 001852 855 ENVRRQMGWN 864 (1004)
Q Consensus 855 ~~~~~~m~~~ 864 (1004)
....+...+.
T Consensus 372 ~~~l~~al~~ 381 (656)
T PRK15174 372 ESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHh
Confidence 9987765443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-14 Score=155.48 Aligned_cols=259 Identities=11% Similarity=0.050 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC
Q 001852 214 DLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD 293 (1004)
Q Consensus 214 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d 293 (1004)
.++-.|...|+.||.+||.++|..|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56677888999999999999999999999999998 9999998888889999999999999999877776 678
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHH-HH-------HcCCCCChhhHHHHHHhhcCCC-C------hhhHHHHHHHHHHh
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHW-MR-------HVGQEINSTTFSTLLSACGSVD-N------LKWGRGIHGLAVKL 358 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~ 358 (1004)
..+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|...+++|-..- + ...-+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999765 333333 22 2233322333333333332111 1 11112333444444
Q ss_pred cCCCchHHHHH----HHHHHHhc-CChhhHHHHHhcCC-CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhh
Q 001852 359 ALNSNVWVCNT----LLAMYSEA-GRSEDAKFVFQEMS-ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVT 432 (1004)
Q Consensus 359 g~~~~~~~~~~----Li~~y~~~-g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 432 (1004)
+....+..++. .++-.... ..+++-........ .++..+|.+.+..-..+|+.+.|..++.+|.+.|+..+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 31111111110 12111111 12233222333333 37889999999999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHH
Q 001852 433 FTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEA 484 (1004)
Q Consensus 433 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 484 (1004)
|..+|-+ .++......+.+-|...|+.|+..++..-+-...+.|....+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888876 788888899999999999999999988877777666654333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-12 Score=134.15 Aligned_cols=328 Identities=15% Similarity=0.141 Sum_probs=218.2
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh--hcCCCChhhHH-HHHHHHHHhcCCCchHHHHHH
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA--CGSVDNLKWGR-GIHGLAVKLALNSNVWVCNTL 370 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~L 370 (1004)
+++=|.|+. ...+|...++.-+|+.|+..|+......-..|+.. +.+..+.--++ +-|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 445555554 44578889999999999999988877766666554 22333333222 2222333333221 1122
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHH
Q 001852 371 LAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGK 450 (1004)
Q Consensus 371 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 450 (1004)
|.|.+.+ ++-+...+...++.+||.|+++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 4455444 444555567789999999999999999999999999999999999999999988653 3448
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHH----hcCC----CCCeechhhhhHHhhhCCChhH-HHHHHHH
Q 001852 451 IIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF----RIMP----KRDTVTWNALIGGHSEKEEPDK-ALKAYKR 521 (1004)
Q Consensus 451 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 521 (1004)
.+..+|+...+.||..++|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.+++.+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999998876543 2332 4555566666666555555533 3333333
Q ss_pred HHh----cCCCC----ChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 522 MRE----EGTPM----NYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 522 m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
++. ..++| |..-|.+.+.-|.+. .+.+.+.++++.+.. |+- ++.|
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~~ll~t--------------------g~N------~~~i 391 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSL-RDLELAYQVHGLLKT--------------------GDN------WKFI 391 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHc--------------------CCc------hhhc
Confidence 332 12222 222344444444444 444444444433221 000 0000
Q ss_pred C--CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 001852 594 A--EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFD 665 (1004)
Q Consensus 594 ~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 665 (1004)
. ....+-|..+....++....+.-+.+|+.|.-.-+-|+..+...++.|....+.++...+++..++..|..
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0 01234566677788888888999999999998888999999999999999999999888888888777643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-13 Score=136.38 Aligned_cols=438 Identities=14% Similarity=0.139 Sum_probs=283.8
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc--ccCChhhh-HHHHHHHHHhcCCCChhhhhHH
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCG--LTENDLLG-YLFLGHVIKFGFHYTVPVANSL 269 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 269 (1004)
+++=|.++. ....|....+.-+|+.|++.|+..++..-..+++.-+ ...++..+ .+-|-.|.+.|-.. ..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS---- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc----
Confidence 345555554 4567889999999999999999888877666665543 33333322 22333344444222 222
Q ss_pred HHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 270 ISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
-|.|++.+ ++-+...++..||.+||.|+|+-...+.|.+++++-.....+.+..+||.+|.+-+ +..++
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 24566554 44455556778999999999999999999999999999999999999999998754 34458
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHH----hcCC----CCCcchHHHHHHHHHcCCCHHH-HHHHHHH
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVF----QEMS----ERDSVSWNSLVASHVQDEKYID-ALKIFSN 420 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 420 (1004)
.+..+|+...+.||.+|+|++++..++.|+++.|++.+ .+|. +|...+|..+|..+++.++..+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999988776544 4454 4788899999999999888754 4444444
Q ss_pred hhh----cCCc---C-CHhhHHHHHHhhcCCCChHHHHHHHHHHHHhC----CCCc---hHHHHHHHHHHHccCChHHHH
Q 001852 421 MLQ----KQRL---V-NYVTFTSALAACSDPGFVVQGKIIHALVITMG----LHDN---LIVGNALVSMYAKSGMMSEAK 485 (1004)
Q Consensus 421 m~~----~g~~---p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~~~g~~~~A~ 485 (1004)
... +.++ | |...|...+..|.+..+.+.|.++++.+.... +.|+ .+-|..+....|....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 2233 3 55678888999999999999999998776421 2222 345666777777777888888
Q ss_pred HHHhcCCC----CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhh
Q 001852 486 QVFRIMPK----RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLT 561 (1004)
Q Consensus 486 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~ 561 (1004)
..++.|.. |+..+-..++.+..-.|.++-.-+++.+|...|-.-+... +..+...+.+.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l-----------------~eeil~~L~~~ 481 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL-----------------REEILMLLARD 481 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH-----------------HHHHHHHHhcC
Confidence 88877763 4555555666666667777777777777777653322222 22333333333
Q ss_pred cccCchhHHhHHhhHHHHcC-ChhhH-HHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCh---
Q 001852 562 GFESHKYVQNSLITMYAKCG-DLNSS-NYIFEGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV-YFDR--- 633 (1004)
Q Consensus 562 g~~~~~~~~~~Li~~y~k~g-~~~~A-~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--- 633 (1004)
...|+..-...|-...+||- ++.++ ...-.++.+. .....+.+...+.+.|+.++|.++|....+.+- -|-.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 33343332222333333321 01111 1111122222 445566677777888888888888887755432 2222
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 001852 634 FSLSEGLAAAAKLAVLEEGHQLHGLATKLGF 664 (1004)
Q Consensus 634 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 664 (1004)
..+.-++++.....+..+|...++.+...++
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2333444555555566666666666654443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-13 Score=157.72 Aligned_cols=429 Identities=12% Similarity=0.055 Sum_probs=233.8
Q ss_pred CCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHH---HHHHHcCCCHHHHHHHH
Q 001852 342 VDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSL---VASHVQDEKYIDALKIF 418 (1004)
Q Consensus 342 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~ 418 (1004)
.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444433222112233 566666667777777777777776544333332 33566667777777777
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeec
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVT 498 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 498 (1004)
+++.+.. +.+..++..++..|...++.++|++.++.+...++..
T Consensus 126 ~kaL~~d------------------------------------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 126 QSSLKKD------------------------------------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHhhC------------------------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 7776541 2234555677788888899999999999887544433
Q ss_pred hhhhhHHhhh--CCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhH
Q 001852 499 WNALIGGHSE--KEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITM 576 (1004)
Q Consensus 499 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~ 576 (1004)
...+..+|.. .++..+|++.++++.+. .|+...+ +..++..
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~-----------------------------------~~~~~~~ 212 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEV-----------------------------------LKNHLEI 212 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHH-----------------------------------HHHHHHH
Confidence 3334445444 55565699999999885 3543332 2334444
Q ss_pred HHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH
Q 001852 577 YAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 577 y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
..+.|-...|.++..+-+.- +...+.-|- .+.|.+..+- +..|...- -.+-.-.+.+..-
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~~vr~----a~~~~~~~-------~~r~~~~d~ala~ 273 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAEQVRM----AVLPTRSE-------TERFDIADKALAD 273 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHHHHhh----cccccccc-------hhhHHHHHHHHHH
Confidence 55556666666665554422 111111000 0011111100 00000000 0000011222222
Q ss_pred HHHHHH-hCCCCC--hhHHhHH---HhhHHhcCChhhHhhhcCCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 656 HGLATK-LGFDLD--PFVTNAA---MDMYGKCGEIGDVLRIAPQPVDRP----RLSWNILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 656 ~~~~~~-~g~~~~--~~~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.+.+.. .+-.|. +....+. +-++.+.|+..++++.|+.+.... ..+--+...+|...++.++|+.+|++.
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 222221 111111 1111222 223455666666666666665321 223445666677777777777777776
Q ss_pred hhc-c----CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcC----------CCCCC---chHHHHHHHHHhcCChH
Q 001852 726 LKY-V----KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFG----------VPAGI---EHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 726 ~~~-~----~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~y~~lv~~l~r~g~~~ 786 (1004)
... . .| +......|..|+..+|++++|..+++++.+.-. -.|+. +.+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 543 1 11 222245566777777777777777777765211 01222 22344566677778888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 787 EAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 787 eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+|++.++++ ..-| |..++..+...++..|+...|++.++.+..++|++...+..++..+-+.|+|.+|.++.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 888777776 2333 3557777777777778888888888777778888877777777777777888887776655544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-11 Score=145.48 Aligned_cols=181 Identities=8% Similarity=0.047 Sum_probs=90.7
Q ss_pred hhCCCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHH---HHHhhcCCCChh
Q 001852 273 FGNFGSVKEARCIFDSMHVRDTI---SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFST---LLSACGSVDNLK 346 (1004)
Q Consensus 273 ~~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~ 346 (1004)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. +...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45666666666666666532221 12255666666666666666666655 222222211 122344445555
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 347 WGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 347 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
.|.++++.+++.... ++.++..++..|...++.++|++.++++...+
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------------------------------- 166 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD-------------------------------- 166 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------------------------------
Confidence 555555555554322 23333444445555555555555555544332
Q ss_pred cCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC
Q 001852 427 LVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP 492 (1004)
Q Consensus 427 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 492 (1004)
|+...+..+.......++...|.+.++.+++.. +.+...+..++....+.|-...|.++...-+
T Consensus 167 -p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 167 -PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred -cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 222222222111212222222444444444432 3456777778888888888888887776644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-09 Score=116.67 Aligned_cols=489 Identities=15% Similarity=0.089 Sum_probs=375.7
Q ss_pred hcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDAL 415 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 415 (1004)
.....+.+.|+-++...++.- +.+...| -+|++..-++.|.++++...+ .+...|.+-..-=-++|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 344455555777777776652 2233333 345555667778888776654 47778877776667788888877
Q ss_pred HHHHH----hhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHccCChHHHHHHHh
Q 001852 416 KIFSN----MLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDN--LIVGNALVSMYAKSGMMSEAKQVFR 489 (1004)
Q Consensus 416 ~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~ 489 (1004)
.+..+ +...|+..+...|..=-.+|-..|.+-.+..+....+..|++.. ..++..-...+.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 77654 45668888888888888888888888888888888888887543 4577777888888899998888887
Q ss_pred cCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCc
Q 001852 490 IMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESH 566 (1004)
Q Consensus 490 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~ 566 (1004)
...+ .+...|...+..=-.+|..++-..+|++....- |. .
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pk-----------------------------------a 583 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PK-----------------------------------A 583 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--Cc-----------------------------------c
Confidence 7653 356678777776667788888888888776631 11 1
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 643 (1004)
...|-....-+-+.|++..|+.+++..-+. +...|-+-+..-..+.++++|..+|.+... ..|....|.--+..-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLE 661 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHH
Confidence 112233334455679999999888776442 667898889999999999999999999877 567777777666777
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHH
Q 001852 644 AKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 644 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
-.++..++|+++++..++. ++.-...|-.+.+.|-..++++.|.+.|....+ |+ +..|-.+...--+.|+..+|..
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 7789999999999887775 344456788899999999999999999988775 44 4579988888889999999999
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 001852 721 TFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 721 l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
++++.....+-|...|...+..=.+.|+.++|..+..+..++ .+.+..-|.--|.+..|.++-..+.+.+++-. -|
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 999998764448889999999999999999999999999874 44555778888889999998777777777654 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeC
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSK 878 (1004)
Q Consensus 801 ~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~ 878 (1004)
+.+..+....+....+++.|...++++++.+|++...+..+-..+...|.-++-.+|+++.... .+.-|..|+-+.
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 5566666777788899999999999999999999999999999999999999999998876643 334577887554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-09 Score=123.76 Aligned_cols=629 Identities=12% Similarity=0.104 Sum_probs=306.0
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhc-CCCChhhhhHHHHHhhCCCCHHHHHHH
Q 001852 207 GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFG-FHYTVPVANSLISMFGNFGSVKEARCI 285 (1004)
Q Consensus 207 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (1004)
|+.++|.+++.+..+.. +-+...|-.|-..+-..|+.+.+...+ ++... .+.|...|..+-....+.|.++.|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 77777777777776643 344556666766676777666555433 22222 233456666666666777777777777
Q ss_pred HhhCCCCCcchHH---HHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhH----HHHHHhhcCCCChhhHHHHHHHHHHh
Q 001852 286 FDSMHVRDTISWN---SMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTF----STLLSACGSVDNLKWGRGIHGLAVKL 358 (1004)
Q Consensus 286 f~~m~~~d~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 358 (1004)
|.+..+.+..-|- --+..|-+.|+...|.+.|.+|.....+.|-.-+ -.+++.+...++-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7665533222222 2234566667777777777776654321111111 12223333333334444444444332
Q ss_pred -cCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC----CCcchHHHH------HHHHHcCCCHHHHHHHHHHhhhcCCc
Q 001852 359 -ALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE----RDSVSWNSL------VASHVQDEKYIDALKIFSNMLQKQRL 427 (1004)
Q Consensus 359 -g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~l------i~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (1004)
+-..+...++.++.+|.+....+.|......+.. +|..-|.+- -..++.. ..++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~--------------~~~~s 375 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV--------------GKELS 375 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------------CCCCC
Confidence 1122333444445555555444444444433322 111111000 0000000 00000
Q ss_pred CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHccCChHHHHHHHhcCCC----CCeechhh
Q 001852 428 VNYVTFTSALAACSDPGFVVQGKIIHALVITMGL--HDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK----RDTVTWNA 501 (1004)
Q Consensus 428 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~ 501 (1004)
++... .-+.-++.+....+....+...+.+..+ .-+...|.-+.++|...|++.+|..+|..+.. .+...|--
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 11001 0111222334444444444444444442 22344555556666666666666666655542 13445555
Q ss_pred hhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh--------hhhcccCchhHHhHH
Q 001852 502 LIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI--------VLTGFESHKYVQNSL 573 (1004)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~--------~~~g~~~~~~~~~~L 573 (1004)
+...|...|.+++|++.|...+. ..|+..-...-|+......+..+.+.+....+ ...+..|+..+.--.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 66666666666666666665555 23433222111111111112223333322221 112233444444444
Q ss_pred hhHHHHcCChhhHHHHHhcCCC--------------------------CCHhHHHHHHHHHHhcCChHHHH------HHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAE--------------------------KNSVTWNAMIAANALHGQGEEVL------KLL 621 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~--------------------------~~~~~~~~li~~~~~~g~~~~A~------~l~ 621 (1004)
.+.|.+.|+.++=..+-..|.. ........++.+-.+.++..... ..+
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 5555555555542222111110 01112222233322222211111 111
Q ss_pred HHhhhcCCCCChh--hHHHHHHHHhhhhhHHHHHHHHHHHHHhC-C-CCCh---hHHhHHHhhHHhcCChhhHhhhcCCC
Q 001852 622 VKMRHTGVYFDRF--SLSEGLAAAAKLAVLEEGHQLHGLATKLG-F-DLDP---FVTNAAMDMYGKCGEIGDVLRIAPQP 694 (1004)
Q Consensus 622 ~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~---~~~~~li~~y~k~g~~~~A~~~~~~~ 694 (1004)
.--...|+..|.. -+.-++.+.++.+.+++|..+...+.... + .++. ..-...+......+++.+|...+..|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111222322221 34455667778888888888776665432 1 2222 23344555566778888888777766
Q ss_pred CCC-----Ch---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 001852 695 VDR-----PR---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFG 764 (1004)
Q Consensus 695 ~~~-----~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 764 (1004)
... ++ ..||...+...++|+-.--.+++..... .+|+. ........-....|.+.-|+.++-....
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~-~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--- 768 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV-KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--- 768 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---
Confidence 543 33 4677767777777665554454444333 23332 2222222333456677778877666643
Q ss_pred CCCCC-chHHHHHHHH----------HhcCChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 765 VPAGI-EHCVCIIDLL----------GRSGRLAEAETFINKM-PVT-P--NDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 765 ~~p~~-~~y~~lv~~l----------~r~g~~~eA~~~i~~m-~~~-p--~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
..|+. -.--||+-++ .|.-.+-++..|+++. ... + ..-+.-+++.+|..-|=+-.|+..|+++++
T Consensus 769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 44552 2222333222 2233345666666554 121 2 234777899999999999999999999999
Q ss_pred cCCCCCC------------CeehhhhHhhhcCCchHHHHHHH
Q 001852 830 LDPSDDS------------SYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 830 l~p~~~~------------~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
+.|.+-. +-..|.-||-..|+...|.++.+
T Consensus 849 ~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 849 VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 9875422 12346679999999999988755
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-14 Score=151.55 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.++.+.|.+.+..+...+.. ++..+..++.. ...++.++|.+++++..+ ++...|..++..+...|+++++.++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444433222 44456666666 678889999888877643 566778888889999999999999999
Q ss_pred HHhhc--cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 001852 724 EMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKMP--VT 798 (1004)
Q Consensus 724 ~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~ 798 (1004)
+.... .++|...|..+...+.+.|+.++|++.+++..+. .|+ ......++.++...|+.+++.+.++... ..
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 98765 4557777888888999999999999999999764 564 5677788999999999999888887651 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 799 PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 799 p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
+|+..|..+..++...|+.+.|...++++++..|+|+.....++.++...|+.++|.++|+..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455689999999999999999999999999999999999999999999999999999998764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-09 Score=119.62 Aligned_cols=519 Identities=12% Similarity=0.074 Sum_probs=259.2
Q ss_pred HHHhhCCCCHHHHHHHHhhCCC--C---CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChh--------------
Q 001852 270 ISMFGNFGSVKEARCIFDSMHV--R---DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINST-------------- 330 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 330 (1004)
+..|...++-+.|.+.++.... . +...+|.++..|.+...++.|+.....+......+|..
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 3334444555555555555432 1 33456666666777777777777666665522222211
Q ss_pred --------hHH----HHHHhhcCCCChhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC----
Q 001852 331 --------TFS----TLLSACGSVDNLKWGRGIHGLAVKLA--LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---- 392 (1004)
Q Consensus 331 --------t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---- 392 (1004)
.|. .+.-++......+....+...+.+.. +.-++..|.-+.++|...|++.+|.++|..+..
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 111 12223344555555666666666665 334556777777777788888888888777754
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHH-HHHHhhcCCCChHHHHHHHHHHH--------HhCCCC
Q 001852 393 RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFT-SALAACSDPGFVVQGKIIHALVI--------TMGLHD 463 (1004)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~ 463 (1004)
.+...|--+..+|...|.+++|.+.|...+.. .|+..--. .+-..+.+.|+.++|.+.+..+. ..+..|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 25667777777787888888888877777653 34432222 22222345566666666655532 223344
Q ss_pred chHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHh-c--CCCCChhhHHHHHHh
Q 001852 464 NLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMRE-E--GTPMNYITFANVLGA 540 (1004)
Q Consensus 464 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~--g~~p~~~t~~~ll~a 540 (1004)
+....--..+.|.+.|+.++=..+-..|..+ .....++. -+. .+ +++.. . +..-...+......+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~--~~~~~~~f--~~~---~k-----~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDD--FLKKRYIF--PRN---KK-----KRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhc--chH---HH-----HHHHhhccccccccchhHHHHHHH
Confidence 4444444555555555555432222221100 00000000 000 00 00000 0 011111122222222
Q ss_pred hcCCcch--hhcccch---hhhhhhhcccCch--hHHhHHhhHHHHcCChhhHHHHHhcCCCCC-----Hh----HHHHH
Q 001852 541 CLNPGDL--LIHGMPI---HTHIVLTGFESHK--YVQNSLITMYAKCGDLNSSNYIFEGLAEKN-----SV----TWNAM 604 (1004)
Q Consensus 541 ~~~~~~~--~~~~~~i---~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-----~~----~~~~l 604 (1004)
..+.+++ .+.+..- ......+|+.-+. ..+.-++...++.++.++|..+...+..-+ .. .=..+
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~ 672 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLG 672 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHH
Confidence 2222111 1111111 1111112222222 344567788899999999999988775432 21 22445
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc-CC--CCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHh
Q 001852 605 IAANALHGQGEEVLKLLVKMRHT-GV--YFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGK 680 (1004)
Q Consensus 605 i~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k 680 (1004)
+.+....+++.+|...++.|... +. .|.. ..|+..++.....++-.--..+...+.......++.....-.+....
T Consensus 673 l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 673 LKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh
Confidence 67778899999999999999764 11 2221 22333344444443322222222222222222223333333445567
Q ss_pred cCChhhHhhhcCCCC--CCChhHHHHH-HHHH----------HhcCCHHHHHHHHHHHhhccCC--CHhHHHHHHHHHhc
Q 001852 681 CGEIGDVLRIAPQPV--DRPRLSWNIL-ISVF----------ARHGYFQKAIETFDEMLKYVKP--DHVTFVSLLSACNH 745 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~--~~~~~~~~~l-i~~~----------~~~g~~~~A~~l~~~m~~~~~p--d~~t~~~ll~a~~~ 745 (1004)
++.+..|...+-+.. .||....|.. ..+| .+|-.+-.++..+.+-.+.-.+ ....|..+..||-+
T Consensus 753 ~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~ 832 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ 832 (895)
T ss_pred ccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 788888876554432 2332222221 1111 1233345566666665554122 44567778888888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 746 GGLVDKGLQYYNTMTTEFGVPAGI---EHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
.|.+.-|.+++++... ++|-. .++. .+.+. - ...+ +|-=.|+..||+++|.+
T Consensus 833 ~gl~~LA~~YYekvL~---~~p~~~~~~~~d--------~~dLr------------k-eAA~-NL~LIY~~SGn~~lArq 887 (895)
T KOG2076|consen 833 IGLVHLAVSYYEKVLE---VSPKDVTDPKED--------NYDLR------------K-EAAY-NLHLIYKKSGNMQLARQ 887 (895)
T ss_pred cccHHHHHHHHHHHhC---CCccccccccCC--------cccHH------------H-HHHh-hhhhhhccCCcHHHHHH
Confidence 8888888888888863 44322 1111 00000 0 1122 23335778899999988
Q ss_pred HHHHH
Q 001852 823 AAEHL 827 (1004)
Q Consensus 823 ~~~~~ 827 (1004)
++++-
T Consensus 888 il~ky 892 (895)
T KOG2076|consen 888 ILEKY 892 (895)
T ss_pred HHHhh
Confidence 88764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=120.01 Aligned_cols=208 Identities=15% Similarity=0.257 Sum_probs=127.0
Q ss_pred cCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 580 CGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 580 ~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
.|++++|.+.+.+....|...-.+|. -.+...|+.++|++.|-++... +.-+...+..+.+.|..+.+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35555555555555554433332222 2345556666666666555332 2223334444445555555555555555
Q ss_pred HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH
Q 001852 657 GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 657 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.++.. -++.|+.+.+.|.++|-+.|+-..|.+..-.-- ..|+.+..=|..-|....-+++|+.+|++..- +.|+.
T Consensus 582 ~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~ 659 (840)
T KOG2003|consen 582 MQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ 659 (840)
T ss_pred HHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH
Confidence 44432 245577778888888888888887777654332 23444444456667777778888888887655 68888
Q ss_pred hHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 001852 734 VTFVSLLSACN-HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFIN 793 (1004)
Q Consensus 734 ~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~ 793 (1004)
+-|-.++..|. +.|++.+|.++++...+ .++.+.+....||.+.+..|. .+|.+.-.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 88887776554 57888888888888766 456677777777777777775 34555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-08 Score=105.92 Aligned_cols=460 Identities=11% Similarity=0.082 Sum_probs=300.8
Q ss_pred HHhhCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCCchhHHHHHHH----HHHcCCCCChhhHHHHHHhhcCCC
Q 001852 271 SMFGNFGSVKEARCIFDSMH---VRDTISWNSMISVYSHSGLCDQSLKCFHW----MRHVGQEINSTTFSTLLSACGSVD 343 (1004)
Q Consensus 271 ~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 343 (1004)
-+|++..-++.|.+++.... ..+...|-+-...--.+|+.+...+++.+ +...|+..|...+..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 34445555666666665543 23556665555555566766666665543 445677777777777777777778
Q ss_pred ChhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHH
Q 001852 344 NLKWGRGIHGLAVKLALNSN--VWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIF 418 (1004)
Q Consensus 344 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 418 (1004)
..-.+..+....+..|+... ..+|+.--..+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 77777777777777776543 34677777777888888888888876654 35667777777667777788888888
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCe
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDT 496 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~ 496 (1004)
++.+..- +-...-+....+..-..|++..|+.++..+.+.... +..++-+-+..-.....++.|+.+|.... .++.
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 7777642 112222222333334456666666666666655422 55566666666666666666666666544 2344
Q ss_pred echhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhH
Q 001852 497 VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITM 576 (1004)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~ 576 (1004)
..|.--+..---.++.++|++++++-++. -|+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~-------------------------------------------- 685 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH-------------------------------------------- 685 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH--------------------------------------------
Confidence 44544444444445556666655554442 22211
Q ss_pred HHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 577 YAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 577 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
-.|-.+...+-+.++.+.|.+.|..-.+ .-|+
T Consensus 686 ----------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~------------------------ 717 (913)
T KOG0495|consen 686 ----------------------KLWLMLGQIEEQMENIEMAREAYLQGTK--KCPN------------------------ 717 (913)
T ss_pred ----------------------HHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCC------------------------
Confidence 1333444445555555555555554332 1222
Q ss_pred HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH
Q 001852 657 GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 657 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.+..|-.|..+=.+.|.+-.|+.++++..- +|...|-..|..-.++|+.+.|..+.-+.++..+.+.
T Consensus 718 ----------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 718 ----------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred ----------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 333455555555666677777777776553 4667899999999999999999999999988766688
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 001852 734 VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASS 811 (1004)
Q Consensus 734 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~ 811 (1004)
..|.--+...-+.++-......+++.. -++.....+..++-...+++.|.+.|.+. ...||.. +|.-+..-.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 888888887778777666666665543 34455566777888899999999999886 6777754 888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
..||.-+.-+.++.+...-+|.....+...+
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999999999998766554433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-09 Score=114.06 Aligned_cols=186 Identities=14% Similarity=0.198 Sum_probs=144.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhcc
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHG 746 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~ 746 (1004)
|--+..+|....+.++-...|+.... .|+.+|.--...+.-.+++++|+.-|++.+. +.| +...|.-+..+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~-L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS-LDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHH
Confidence 33344455555666666666654432 3455566566666677889999999999888 466 667888888888889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCC
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN---------DLVWRSLLASSKIHGN 816 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~---------~~~~~~ll~~~~~~g~ 816 (1004)
+.++++...|+..+++ .+-.++.|+....+|...+++++|.+.++.. .++|+ +.+-.+++-.-.+ +|
T Consensus 442 ~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-ED 518 (606)
T ss_pred HHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hh
Confidence 9999999999999874 4556688998999999999999999998875 45554 4455555544333 89
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 817 VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
+..|+...++++++||...-+|..|+.+-.+.|+.++|.++.++
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-11 Score=129.28 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHH--
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC-- 774 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-- 774 (1004)
.+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..+..||++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ-LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc-cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHH
Confidence 345666666666666666666666666665 355 45566655555555566666666666543 234445444
Q ss_pred -HHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCc
Q 001852 775 -IIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 775 -lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
+.-.|.+.++++.|+-.++++ ++.|... +...+...+...|+.|+|.+.+++++.++|.|+-.-+..+.++...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 334555666666666666655 5566544 3344444455556666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhh
Q 001852 852 DDVENVRRQMGW 863 (1004)
Q Consensus 852 ~~a~~~~~~m~~ 863 (1004)
++|.++.+++++
T Consensus 574 ~eal~~LEeLk~ 585 (638)
T KOG1126|consen 574 VEALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.1e-10 Score=115.39 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=163.0
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP---RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSA 742 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a 742 (1004)
-+.+...+.+.|+-.++.++|...|++..+-| ...|+-|..-|....+...|++-++..++ +.| |...|.+|..+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-INPRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-cCchhHHHHhhhhHH
Confidence 34566778888999999999999999887533 46899999999999999999999999999 566 99999999999
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP--VTPNDLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~p~~~~~~~ll~~~~~~g~~e~ 819 (1004)
|.-.++..=|+-+|++..+ ..| |...+..|+++|.+.++++||.+-++..- ...+..++..|...+...++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999974 445 67889999999999999999999999873 23345788899999999999999
Q ss_pred HHHHHHHHHh-------cCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 820 AKKAAEHLFE-------LDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 820 a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
|.+.+++-++ .+|+-..+-..|++-+...++|++|..--.
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999998 455556677789999999999999987433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-11 Score=128.22 Aligned_cols=271 Identities=13% Similarity=0.019 Sum_probs=208.7
Q ss_pred ChhhHHHHHhcCCCC--CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC----ChhhHHHHHHHHhhhhhHHHHHH
Q 001852 582 DLNSSNYIFEGLAEK--NSV-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYF----DRFSLSEGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 582 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~~~~~~a~~ 654 (1004)
+..+|...|+.++.. |+. ....+..+|...+++++|.++|+...+. .| +...|.++|--+-+. -+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHHH
Confidence 467888888887654 443 3345677899999999999999998763 44 334555555432211 1112
Q ss_pred HHH-HHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 001852 655 LHG-LATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQKAIETFDEMLKYVK 730 (1004)
Q Consensus 655 ~~~-~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 730 (1004)
++. .+++. -+..+.+|.++.+.|.-+++.+.|++.|++..+- ...+|+-+..-+.....+++|...|+..+. +.
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-VD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-CC
Confidence 222 22222 2457899999999999999999999999998864 456888888888999999999999999988 46
Q ss_pred C-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 001852 731 P-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRS 806 (1004)
Q Consensus 731 p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ 806 (1004)
| +-..|.++...|.+.++++.|...|+.+. .|.|.. ....++...+.+.|+.|+|+.+++++ -++|. +..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6 55689999999999999999999999986 678865 66667788999999999999999997 33333 222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
-...+...++.++|.+.+|++.++-|+++..|.+|+.+|-..|+.+.|..=..-+-+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 334456679999999999999999999999999999999999999999775554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-06 Score=99.05 Aligned_cols=750 Identities=14% Similarity=0.111 Sum_probs=377.0
Q ss_pred hhhHHHHHHHccCChhHHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhc
Q 001852 62 YNNTLINMYFKFGCLGYARYVFDKMGD---KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDW 138 (1004)
Q Consensus 62 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 138 (1004)
+|-.-.+.+...|++++|-++-...|. ++.-|-+..=+.=...|.+..-+..|..+...| +.|..-=.-+.+.-..
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~ 440 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQ 440 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 333444455567888888888777665 455555555555556677777777777777666 3333221122222112
Q ss_pred cCcchhhHHHHHHHHh--------hcCCCCCcchhhhHHHHhhcCCChhhHHHhhccC-------------C-CCchhHH
Q 001852 139 SGFMVSEGIQVHGFSV--------KVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM-------------P-VRNVVSW 196 (1004)
Q Consensus 139 ~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-------------~-~~~~~~~ 196 (1004)
.++.. -+-.++. +.|-..-++--+.-++.|.|.+-...+...|.+. . .||.
T Consensus 441 Q~Rkq----LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdy--- 513 (1666)
T KOG0985|consen 441 QGRKQ----LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDY--- 513 (1666)
T ss_pred hhHHH----HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccH---
Confidence 22111 1111111 1121001111112233344444333333333332 2 2332
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCC
Q 001852 197 TSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNF 276 (1004)
Q Consensus 197 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 276 (1004)
-.+|+...+ -.++.+.++...|.+.. |....+..+...+...+....+..++-.+++..-+.-..+.+.|+.+-...
T Consensus 514 mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~ 590 (1666)
T KOG0985|consen 514 MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVH 590 (1666)
T ss_pred HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhcc
Confidence 234444444 45666666655555422 122233334444444444444444444444333222223334444333221
Q ss_pred CCHHHHHHHHhh-CCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcC---CCCChhhHHHHHHhhcCCCChhhHHHHH
Q 001852 277 GSVKEARCIFDS-MHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVG---QEINSTTFSTLLSACGSVDNLKWGRGIH 352 (1004)
Q Consensus 277 g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 352 (1004)
+ .+-|..++-. |- ...-|..+.+.|.++|-...|++.+.++..-. +..+... .-.+-.+...-.++...+.+
T Consensus 591 a-PqVADAILgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~-pEwLv~yFg~lsve~s~ecl 666 (1666)
T KOG0985|consen 591 A-PQVADAILGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLN-PEWLVNYFGSLSVEDSLECL 666 (1666)
T ss_pred c-hHHHHHHHhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCC-HHHHHHHHHhcCHHHHHHHH
Confidence 1 2222222211 11 11227778888888999999998877664211 0000000 01122233344677788888
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---------------CCcchHHHHHHHHHcCCCHHHHHHH
Q 001852 353 GLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---------------RDSVSWNSLVASHVQDEKYIDALKI 417 (1004)
Q Consensus 353 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l 417 (1004)
..|...++..+..+.-....-|...=-.+.-.++|+.... .|....---|.+-++.|++.+..++
T Consensus 667 kaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERi 746 (1666)
T KOG0985|consen 667 KAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERI 746 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHH
Confidence 8888888777777776666666666556666677766653 3555666678888999998888877
Q ss_pred HHHhhh-----------cCCcCCHhhHHHHHHhhcCCCChH------------HHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001852 418 FSNMLQ-----------KQRLVNYVTFTSALAACSDPGFVV------------QGKIIHALVITMGLHDNLIVGNALVSM 474 (1004)
Q Consensus 418 ~~~m~~-----------~g~~p~~~t~~~ll~a~~~~~~~~------------~a~~~~~~~~~~g~~~~~~~~~~Li~~ 474 (1004)
.++-.- ..-.+|. ..++-.|-+-+-+. .-.+++ ..+-+....+.+..+|++.
T Consensus 747 cresn~YdpErvKNfLkeAkL~Dq---lPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~y--VQkvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 747 CRESNCYDPERVKNFLKEAKLTDQ---LPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIY--VQKVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HhccccCCHHHHHHHHHhcccccc---CceEEEecccccHHHHHHHHHHhhHHHHHHHH--HhhcCCcccchhhhhhhcC
Confidence 654210 0000110 01111222222211 111111 1111222233344444432
Q ss_pred HHcc-----------CC---------------hHHHHHHHhcCC---CCCeechhhhhHHhhhCCChhHHHHHHHHHHhc
Q 001852 475 YAKS-----------GM---------------MSEAKQVFRIMP---KRDTVTWNALIGGHSEKEEPDKALKAYKRMREE 525 (1004)
Q Consensus 475 y~~~-----------g~---------------~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (1004)
=|.. |+ +.--...++... ..|+.++|+|...|..+++-.+-. .+.
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~f------Lke 895 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERF------LKE 895 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHh------ccc
Confidence 2211 11 000001111100 124455555555555444332211 111
Q ss_pred CCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcc--------cCchhHHhHHhhHHHHcCChhhHHHHH-------
Q 001852 526 GTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGF--------ESHKYVQNSLITMYAKCGDLNSSNYIF------- 590 (1004)
Q Consensus 526 g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f------- 590 (1004)
+..-|. .++.-++.. .+.-.+-- .-+.|- -..-..+..+..-..+..+.+-=.+++
T Consensus 896 N~yYDs----~vVGkYCEK-RDP~lA~v----aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r 966 (1666)
T KOG0985|consen 896 NPYYDS----KVVGKYCEK-RDPHLACV----AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR 966 (1666)
T ss_pred CCcchh----hHHhhhhcc-cCCceEEE----eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence 100010 011111111 00000000 000110 011112222333333333333322222
Q ss_pred ----hcC-----CC-CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-hhhHHHH--------------------
Q 001852 591 ----EGL-----AE-KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD-RFSLSEG-------------------- 639 (1004)
Q Consensus 591 ----~~~-----~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~l-------------------- 639 (1004)
++. ++ +|+..-+.-+.++...+-+.+-++++++..-.+-.-+ ...+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 211 11 2555566677888889999999999998764221111 1111111
Q ss_pred --------HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHh
Q 001852 640 --------LAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFAR 711 (1004)
Q Consensus 640 --------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 711 (1004)
...+...+..++|..++... ..+....+.|++ .-++++.|.+.-++..+ +..|..+..+-.+
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQ 1116 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHh
Confidence 11222233334444443321 222222223332 33555555555554443 4579999999999
Q ss_pred cCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHH
Q 001852 712 HGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
.|...+|++-|-+. -|...|.-++.++++.|.|++-.+++.-..++ .-+|.++. .++-+|++.+++.|-++|
T Consensus 1117 ~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHH
Confidence 99999999887543 36678999999999999999999998766654 66777664 688999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 792 INKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 792 i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
+. -|+..-....+.-|...|.+|.|+-++.. .+.|..|+..+...|.+..|...-++.....+.|+.+
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 84 47777788889999999999999888864 4567788888888888888877655555555556555
Q ss_pred ccEEE
Q 001852 872 CSWVK 876 (1004)
Q Consensus 872 ~s~i~ 876 (1004)
..+|+
T Consensus 1257 faCvd 1261 (1666)
T KOG0985|consen 1257 FACVD 1261 (1666)
T ss_pred HHHhc
Confidence 55554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-10 Score=115.36 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=148.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
.|+++.|.+.+.......-......|| +.-.|.+.|++++|++.|-++. ..+....-.+.+.|-...+...|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456666666665554432211111121 2224667788888888876654 356666677788888888999999999
Q ss_pred HHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-CCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 001852 723 DEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGV-PAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 723 ~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
.+....++.|.....-|...|-+.|+-.+|.+++-.- |.. +-++++..-|...|....-+++|.+.+++. -+.|+
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 8887756668888888889999999999998865543 333 346677777777888888889999999887 57899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 801 DLVWRSLLASS-KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 801 ~~~~~~ll~~~-~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.+-|..++.+| +..||+..|...++.+-...|+|..-.-.|..+....|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999888887 456999999999999999999998877777777666664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-10 Score=125.10 Aligned_cols=285 Identities=12% Similarity=-0.017 Sum_probs=184.9
Q ss_pred cCChHHHHHHHhcCCCC--Ceechhhh-hHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccch
Q 001852 478 SGMMSEAKQVFRIMPKR--DTVTWNAL-IGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 478 ~g~~~~A~~~f~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
.|+++.|++.+...++. ++..+-.+ .....+.|++++|.+.|.++.+. .|+.....
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~------------------- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPV------------------- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH-------------------
Confidence 47788888777765532 12222222 33336778888888888888652 33322110
Q ss_pred hhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 001852 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYF 631 (1004)
Q Consensus 555 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 631 (1004)
.......+...|+++.|...++...+. ++.....+...|.+.|++++|++++.++.+.+..+
T Consensus 156 ---------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~ 220 (398)
T PRK10747 156 ---------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD 220 (398)
T ss_pred ---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence 112245667778888888887776543 56677777888888888888888888888765443
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHH
Q 001852 632 DRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISV 708 (1004)
Q Consensus 632 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 708 (1004)
+.. +..+-. ..+..++....+..+.+...++++..+. .++..+..+..+
T Consensus 221 ~~~-~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 221 EEH-RAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHH-HHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 221 110000 0111122222222333444444444442 466677778888
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 709 FARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
+...|+.++|.+++++..+ .+||... .++.+....|+.+++++..++..+.+ +-+...+.++..++.+.|++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888887 3555521 23344445688888888888887643 22345677888888888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 789 ETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 789 ~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
.+.++++ ...|+...+..|...+...|+.+.|...+++.+.+-
T Consensus 348 ~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 348 SLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888886 678888888888888888899999999999988864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=125.85 Aligned_cols=271 Identities=12% Similarity=0.072 Sum_probs=204.2
Q ss_pred cCChhhHHHHHhcCCCC--C-HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHH--HHHHHHhhhhhHHHHHH
Q 001852 580 CGDLNSSNYIFEGLAEK--N-SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS--EGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 580 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 654 (1004)
.|+++.|.+.+...++. + ...+-.......+.|++++|.+.|.++.+ ..|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58999999888876654 2 23333223444788999999999999976 456654333 22446677899999999
Q ss_pred HHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 655 LHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPR-----------LSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 655 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999888776 44678888999999999999999988887764221 133344444444555666666666
Q ss_pred HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHH--hcCChHHHHHHHHhC-CCCCC
Q 001852 724 EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG--RSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 724 ~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~--r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
+..+..+.+......+..++...|+.++|.+.+++..+ .+|+.. ++.+|+ +.|+.+++.+.+++. +..|+
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~----l~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER----LVLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH----HHHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66554555777888999999999999999999988865 344442 333333 459999999999887 55666
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 801 DL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 801 ~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.. .+.++...|...|+.+.|+..++++++.+|++.. +..|+.++.+.|+.++|.+.+++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 6778888999999999999999999999998755 779999999999999999987753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-09 Score=118.74 Aligned_cols=253 Identities=12% Similarity=-0.067 Sum_probs=140.4
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhh
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK----NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAV 648 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 648 (1004)
...+.+.|+.+.|...|.+..+. +....-.....+.+.|++++|+..++++.+. .|+. ..+..+...+...|+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhh
Confidence 44566678888888888775322 2223333466677788888888888888775 3533 455566667778888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHHhhH-------HhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHH
Q 001852 649 LEEGHQLHGLATKLGFDLDPFVTNAAMDMY-------GKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKA 718 (1004)
Q Consensus 649 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 718 (1004)
++.+.+++..+.+.+..+.......-...+ ......+...+..+..+. +++..+..++..+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 888888888877776443222211111111 111222333334444442 3666677777777777777777
Q ss_pred HHHHHHHhhccCCCHhH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHh-
Q 001852 719 IETFDEMLKYVKPDHVT---FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINK- 794 (1004)
Q Consensus 719 ~~l~~~m~~~~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~- 794 (1004)
++.+++.++. .||... ...........++.+++.+.+++..+.+...|+.....+++.++.+.|++++|.+.+++
T Consensus 283 ~~~l~~~l~~-~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 283 QEIIFDGLKK-LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHhh-CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 7777777774 443331 11111222334555566666655554333333223344555555555666666655552
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 795 --MPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 795 --m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
....|++.++..|...+...|+.+.|..++++.++
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455555555555555555555555555555544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=123.44 Aligned_cols=280 Identities=11% Similarity=0.020 Sum_probs=202.4
Q ss_pred HHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh--hHHHHHHHHhhhhhHHHH
Q 001852 578 AKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF--SLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 578 ~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 652 (1004)
...|+++.|.+.+.+..+. ....+-.....+.+.|++++|.+.|.+..+. .|+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999877654 2334444456678889999999999998764 45553 233346667789999999
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWN----ILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.+.+..+.+.. +-++.+...+..+|...|++++|.+.++...+. +...+. ....++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998886 346678889999999999999999998887743 222221 1111223334444445566666
Q ss_pred hhcc----CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 001852 726 LKYV----KPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM----PV 797 (1004)
Q Consensus 726 ~~~~----~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~ 797 (1004)
.+.. +.+...+..+...+...|+.++|.+.+++..+...-.+...+.....-.....++.+++.+.+++. |.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6542 237778888999999999999999999999865322222111111112223357778888888765 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAE--HLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.|+.....+|.+.|...|+.+.|++.+| .+++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4433677899999999999999999999 68888897766 669999999999999999998863
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-09 Score=113.58 Aligned_cols=254 Identities=13% Similarity=0.040 Sum_probs=188.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcC
Q 001852 603 AMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCG 682 (1004)
Q Consensus 603 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 682 (1004)
.-..-+-..+++.+.+++++...+. .++....+..-|..+...|+-.+-..+-..+.+. .+..+.+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344445555666666666665543 2233333333344444455444433333333332 3456778888888888889
Q ss_pred ChhhHhhhcCCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 683 EIGDVLRIAPQPVDRPR---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+..+|++.|.+...-|. ..|-.....|+-.|..+.|+..+...-+.++-.+..+.-+..-|...+..+-|.++|.+.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999998775443 589999999999999999999999988866667777777888999999999999999998
Q ss_pred HhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 760 TTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM--P------VTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 760 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~------~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
. +|.| ++..+.-+.-+.-..+.+.+|...++.. + -.+ -..+|..|+.+|++.+..++|+..+++++.
T Consensus 407 ~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 407 L---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred H---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5 5555 3444444555555678888888887664 1 122 245799999999999999999999999999
Q ss_pred cCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 830 LDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 830 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
+.|.++.+|..++-+|...|+.+.|..-..+-
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999977653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=118.91 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=165.9
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
....+..+...|.+.|++++|.+.|++... .+...|..+...|...|+.++|++.+++..+..+.+...+..+...+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456677788899999999999999987653 34668888999999999999999999999885444667788889999
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001852 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
...|++++|..+|++..+....+.....+..+..++.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999864222233456777889999999999999999886 44454 557888888899999999999
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..+++++++.|.++..+..++.++...|++++|....+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998888888999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=129.66 Aligned_cols=252 Identities=15% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHhhHHHHcCChhhHHHHHhcC-C----CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 572 SLITMYAKCGDLNSSNYIFEGL-A----EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 572 ~Li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
.+..++.+.|++++|.+++++. . ..|+..|..+.......++.++|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567788899999999999543 2 236667777777888899999999999999876433 33445555554 688
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
++.++|.++.....+.. +++..+..++..|.+.|+++++.+++++.. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899988876665443 456667788899999999999999988743 35677899999999999999999999
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP 799 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p 799 (1004)
+++.++. .| |......++..+...|+.+++.++++...+.. +.++..+..++.++...|+.++|...+++. ...|
T Consensus 169 ~~~al~~-~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL-DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999995 66 56778889999999999999999999988753 556667788999999999999999999987 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 800 -NDLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 800 -~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
|+.+..++..++...|+.+.|..+.+++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5667788999999999999999999998763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-07 Score=100.12 Aligned_cols=352 Identities=10% Similarity=0.057 Sum_probs=210.1
Q ss_pred CCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhh--HHHHH
Q 001852 360 LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVT--FTSAL 437 (1004)
Q Consensus 360 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll 437 (1004)
...|.+.+-..--.+-+.|....|+..|......-+..|.+-+.-.--..+.+.+..+ .. |...|... =-.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHH
Confidence 3444444433334455667777787777776654444444433222212222222111 11 11111111 12233
Q ss_pred HhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCC------CeechhhhhHHhhhCCC
Q 001852 438 AACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR------DTVTWNALIGGHSEKEE 511 (1004)
Q Consensus 438 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~ 511 (1004)
.++......+++.+-.......|++.+...-+-...++-...+++.|+.+|+++.+. |..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 445555567777777777777788777776666666677778888888888888753 344555544 333333
Q ss_pred hhHHHHHHHHHH--hcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHH
Q 001852 512 PDKALKAYKRMR--EEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYI 589 (1004)
Q Consensus 512 ~~~A~~l~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 589 (1004)
.. +.++.+-. -...+|. +...+.+-|+-.++-++|...
T Consensus 313 sk--Ls~LA~~v~~idKyR~E--------------------------------------TCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPE--------------------------------------TCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HH--HHHHHHHHHHhccCCcc--------------------------------------ceeeehhHHHHHHhHHHHHHH
Confidence 22 22222211 1223332 223445566777777888888
Q ss_pred HhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 001852 590 FEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL 666 (1004)
Q Consensus 590 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 666 (1004)
|+...+- -...|+-|..-|....+...|++-++...+. .|-
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~---------------------------------- 396 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR---------------------------------- 396 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch----------------------------------
Confidence 8866543 4678999999999999999999888887763 221
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
|-..|-.|.++|.-.+-..-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....-..+...++.|...+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 44456666666766666666776666654 246677777777777777788888877777765333556777777888
Q ss_pred hccCCHHHHHHHHHHhHhhc---C-CCC-CCchHHHHHHHHHhcCChHHHHHHHHh
Q 001852 744 NHGGLVDKGLQYYNTMTTEF---G-VPA-GIEHCVCIIDLLGRSGRLAEAETFINK 794 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~ 794 (1004)
-+.++.++|..+|+...+.. | +.| ......-|..-+-+.+++++|......
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 88888888887777766532 1 223 223333455566677777777665443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-06 Score=96.69 Aligned_cols=724 Identities=13% Similarity=0.085 Sum_probs=390.0
Q ss_pred HhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccH
Q 001852 52 IKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD--KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLI 129 (1004)
Q Consensus 52 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 129 (1004)
.+.|..||... ++....+ -..+.|..+...|++ +...-.+.+...+...+..+.+..++-.... +..|+....
T Consensus 505 kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK-~~~Pd~g~L 579 (1666)
T KOG0985|consen 505 KKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALK-LNSPDEGHL 579 (1666)
T ss_pred HHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhc-CCChhhhhH
Confidence 34555555432 3333333 455555555555443 3344566666666677777777766655543 234443322
Q ss_pred HH-HHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCC--CchhHHHHH-----HH
Q 001852 130 SS-LLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV--RNVVSWTSL-----MV 201 (1004)
Q Consensus 130 ~~-ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~ 201 (1004)
.+ +|.--. . .+-++-+.+...+.- ..+-+..+...+.+.|-+..|++.+..+.. +.++ -+.+ +.
T Consensus 580 QTrLLE~NL-----~-~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv 651 (1666)
T KOG0985|consen 580 QTRLLEMNL-----V-HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLV 651 (1666)
T ss_pred HHHHHHHHh-----c-cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHH
Confidence 21 111100 0 122233333322211 112255677788899999999999988752 2222 2222 23
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh-----------cCCCChhhhhHHH
Q 001852 202 AYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF-----------GFHYTVPVANSLI 270 (1004)
Q Consensus 202 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li 270 (1004)
.|.-.-.++.+++.++.|...++.-|..+...+..-+...-..+...++|+..... ++..|+.+.-.-|
T Consensus 652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYI 731 (1666)
T KOG0985|consen 652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYI 731 (1666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHH
Confidence 45555678899999999999988888777666655555443333333444333221 3556677777889
Q ss_pred HHhhCCCCHHHHHHHHhhCCC-------------------C-----Cc-------chH------HHHHHHHHhCCCchhH
Q 001852 271 SMFGNFGSVKEARCIFDSMHV-------------------R-----DT-------ISW------NSMISVYSHSGLCDQS 313 (1004)
Q Consensus 271 ~~~~~~g~~~~A~~~f~~m~~-------------------~-----d~-------~~~------~~li~~~~~~g~~~~A 313 (1004)
.+-++.|.+.+.+++-++-.. | |. +.| --.|..|.+.-++...
T Consensus 732 qAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~ 811 (1666)
T KOG0985|consen 732 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRT 811 (1666)
T ss_pred HHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCccc
Confidence 999999999999888765420 1 11 111 1123334433333322
Q ss_pred HHHHHHHHHcCCCCChhhHH------------HHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 001852 314 LKCFHWMRHVGQEINSTTFS------------TLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSE 381 (1004)
Q Consensus 314 ~~l~~~m~~~g~~p~~~t~~------------~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 381 (1004)
-.+...+...... ..+.-+ -+..-+-+..+++.-...++..+..|. .|+.++|+|...|...++-.
T Consensus 812 p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnP 889 (1666)
T KOG0985|consen 812 PQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNP 889 (1666)
T ss_pred chhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCCh
Confidence 2222222221111 011111 122223344555555566666777774 48889999998887765433
Q ss_pred hHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhh-------------------hcC-CcCCHhhHHHHHHhhc
Q 001852 382 DAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNML-------------------QKQ-RLVNYVTFTSALAACS 441 (1004)
Q Consensus 382 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------------------~~g-~~p~~~t~~~ll~a~~ 441 (1004)
+ +.+.+ |..-=+..+.-||...++.-|.-.|++-. +-- -+.|...|..+|.
T Consensus 890 E--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~--- 960 (1666)
T KOG0985|consen 890 E--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN--- 960 (1666)
T ss_pred H--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh---
Confidence 2 11111 11111112223333322222211111100 000 0123333333332
Q ss_pred CCCChHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHccCChHHHHHHHhcCC-CCCeech-----hhhhHHhhhCCChh
Q 001852 442 DPGFVVQGKIIHALVITMGLH--DNLIVGNALVSMYAKSGMMSEAKQVFRIMP-KRDTVTW-----NALIGGHSEKEEPD 513 (1004)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~-----~~li~~~~~~g~~~ 513 (1004)
..-..-+++.+..+..+++ .|+.-.+.-+.++...+-..+-.++++.+. ++++.+= |.||-.-. .-+..
T Consensus 961 --e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~t 1037 (1666)
T KOG0985|consen 961 --EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRT 1037 (1666)
T ss_pred --ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChH
Confidence 1112234555666655543 345555666777777777777777777765 3333322 22222222 23344
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 514 KALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 514 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
...+..+++-.-. .|+.... +... +..+++-.++.. +..+....+.||+ .-+.++.|.+.-++.
T Consensus 1038 rVm~YI~rLdnyD-a~~ia~i------ai~~-~LyEEAF~ifkk-----f~~n~~A~~VLie---~i~~ldRA~efAe~~ 1101 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYD-APDIAEI------AIEN-QLYEEAFAIFKK-----FDMNVSAIQVLIE---NIGSLDRAYEFAERC 1101 (1666)
T ss_pred HHHHHHHHhccCC-chhHHHH------Hhhh-hHHHHHHHHHHH-----hcccHHHHHHHHH---HhhhHHHHHHHHHhh
Confidence 4555555543321 1111110 0000 222333333222 2233333334433 346777777777766
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhH
Q 001852 594 AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNA 673 (1004)
Q Consensus 594 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 673 (1004)
.+ +..|+.+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-..++.++.+..-+|.+ -+.
T Consensus 1102 n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~e 1171 (1666)
T KOG0985|consen 1102 NE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSE 1171 (1666)
T ss_pred CC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHH
Confidence 54 457999999999999999999988653 35678999999999999999999999999888777654 457
Q ss_pred HHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGL 753 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 753 (1004)
|+-+|+|.+++.+-.+.+. .||+.-......-|-..|.++.|.-+|... ..|.-|.+.+.+.|.+.-|.
T Consensus 1172 Li~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777665543 344444555556666666666665555432 23555666666666666665
Q ss_pred HHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 754 QYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
..-++. .+..+|.-+..++...+.+.-|.- ....+--.+.-..-|+.-|...|-+|+-+..+|..+.++--
T Consensus 1241 D~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1241 DAARKA-------NSTKTWKEVCFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred HHhhhc-------cchhHHHHHHHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 543332 223445555555544444433321 11112222334556677777778888888888888888888
Q ss_pred CCCCeehhhhHhhhc
Q 001852 834 DDSSYVLYSNVCAAT 848 (1004)
Q Consensus 834 ~~~~~~~l~~~y~~~ 848 (1004)
+-+.+.-|+-+|++-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888777653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=102.51 Aligned_cols=312 Identities=14% Similarity=0.112 Sum_probs=174.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHH
Q 001852 508 EKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSN 587 (1004)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 587 (1004)
-++++++|.++|-+|.+. |..|| ..--+|.+.|-+.|..|.|+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~----d~~t~---------------------------------e~~ltLGnLfRsRGEvDRAI 89 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE----DPETF---------------------------------EAHLTLGNLFRSRGEVDRAI 89 (389)
T ss_pred hhcCcchHHHHHHHHHhc----Cchhh---------------------------------HHHHHHHHHHHhcchHHHHH
Confidence 357899999999999872 33333 12235667777778888888
Q ss_pred HHHhcCCCC-C------HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 588 YIFEGLAEK-N------SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 588 ~~f~~~~~~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++.+.+.++ | ..+.-.|..-|...|-++.|..+|..+.+.|. --......++..|-....++.|..+-..+.
T Consensus 90 RiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 90 RIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777766543 2 23344556667777777777777777766432 122334455555555555555555555554
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSL 739 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~l 739 (1004)
+.+-++... -+. ..|.-+...+....+.+.|..++.+..+. .|. ...=..+
T Consensus 169 k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~l 220 (389)
T COG2956 169 KLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIIL 220 (389)
T ss_pred HcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhh-Cccceehhhhh
Confidence 443322111 001 12233344444445555555555555553 332 2222334
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
.......|+++.|.+.++...+. +..--.+....|..+|...|+.++...++.++ ...++...-..+..--..+.-.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGID 299 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChH
Confidence 44555555555555555555442 22222244444555555566666666555543 33344333333333333333344
Q ss_pred HHHHHHHHHHhcCCCCCCCeehhhhHhh--hcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEec
Q 001852 819 LAKKAAEHLFELDPSDDSSYVLYSNVCA--ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGM 886 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~--~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~ 886 (1004)
.|...+.+-+.-.|.--+.|-++..-.+ +.|+|.+...+-+.|....++..|.+.+-..+-+.|.|.-
T Consensus 300 ~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 300 AAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 4555555555555554444444433333 3477888888888888888999999999999999998874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.3e-11 Score=88.22 Aligned_cols=50 Identities=22% Similarity=0.441 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 001852 191 RNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGL 240 (1004)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 240 (1004)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.5e-11 Score=87.62 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcC
Q 001852 292 RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGS 341 (1004)
Q Consensus 292 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 341 (1004)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-07 Score=102.73 Aligned_cols=127 Identities=12% Similarity=0.082 Sum_probs=78.3
Q ss_pred CCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCe---echhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 001852 462 HDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDT---VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVL 538 (1004)
Q Consensus 462 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 538 (1004)
.-+..+...-.+-+-..+++.+..++++.+.+.|+ ..+..-|..+...|+..+-..+=.+|++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------- 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------- 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------------
Confidence 34445555555555566666666666666554333 23333345555555555555555555442
Q ss_pred HhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChH
Q 001852 539 GACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGE 615 (1004)
Q Consensus 539 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 615 (1004)
.+.....|-++..-|.-.|+.++|++.|.+...- -...|-.....|+-.|..+
T Consensus 308 ------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 308 ------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred ------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH
Confidence 2334455667777777778888888888766543 3457888888888888888
Q ss_pred HHHHHHHHhh
Q 001852 616 EVLKLLVKMR 625 (1004)
Q Consensus 616 ~A~~l~~~m~ 625 (1004)
+|+..+...-
T Consensus 364 QAmaaY~tAa 373 (611)
T KOG1173|consen 364 QAMAAYFTAA 373 (611)
T ss_pred HHHHHHHHHH
Confidence 8877766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-06 Score=92.14 Aligned_cols=478 Identities=12% Similarity=0.102 Sum_probs=320.0
Q ss_pred cCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHH
Q 001852 377 AGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIH 453 (1004)
Q Consensus 377 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 453 (1004)
.+++..|+.+|++... +++..|---+..=.++.....|..++++.+..-...|..-|-- +..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHHH
Confidence 3556667777776654 4566676667777777777777777777665433333333221 22223457888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCCh
Q 001852 454 ALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNY 531 (1004)
Q Consensus 454 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 531 (1004)
..-.+ ..|+...+++.|+.-.+-..++.|+.+++... .|++.+|---..-=-++|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 87765 57888889999998888888999999888754 688888877777777788888888888776653 1223
Q ss_pred hhHHHHHHhhcCCc---chhhcccchhhhhhhhcccC-chhHHhHHhhHHHHcCChhhHHHHH--------hcCCCC---
Q 001852 532 ITFANVLGACLNPG---DLLIHGMPIHTHIVLTGFES-HKYVQNSLITMYAKCGDLNSSNYIF--------EGLAEK--- 596 (1004)
Q Consensus 532 ~t~~~ll~a~~~~~---~~~~~~~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f--------~~~~~~--- 596 (1004)
..-..++.+++.-. ...+.+.-++...+..-... ...++..+...=-+-|+........ +.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 33333344443221 34556666666666542222 2345555555555556544333322 222222
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh-------hH---HHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF-------SL---SEGLAAAAKLAVLEEGHQLHGLATKLGFDL 666 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~---~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 666 (1004)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .| +..+-.-....+.+.+++++...++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5668888888888889999999999998864 666321 11 1112222356788899999988887 4455
Q ss_pred ChhHHhHHHhhHH----hcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 667 DPFVTNAAMDMYG----KCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 667 ~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
..+++.-+--||+ ++.++..|.+++..... |-.-.+...|..-.+.++++..-.++++.++ ..| |-.+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FSPENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cChHhhHHHHHH
Confidence 6666666655664 78899999999987663 5666778888888899999999999999998 566 77889888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----h
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSK-----I 813 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~-----~ 813 (1004)
...=...|+.|.|..+|+-+.+...+.--...+...||.=...|.++.|..++++. ...+-..+|-++..--. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 88788899999999999999875333222345667788888899999999999887 34455558888765433 3
Q ss_pred cC-----------CHHHHHHHHHHHHhc----CCCCCCC--eehhhhHhhhcCCchHHHHHHHHHh
Q 001852 814 HG-----------NVELAKKAAEHLFEL----DPSDDSS--YVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 814 ~g-----------~~e~a~~~~~~~~~l----~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
.+ ++..|..+++++... +|...-. ....-|+=...|.-.+...|.++|-
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 34 677888888888773 3322111 1122234445566667777766663
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-06 Score=92.13 Aligned_cols=213 Identities=13% Similarity=0.046 Sum_probs=117.8
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHH
Q 001852 358 LALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFT 434 (1004)
Q Consensus 358 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 434 (1004)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998764 245679999999999999999999998876554445544433
Q ss_pred HHHH-hhc-CCCChHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 435 SALA-ACS-DPGFVVQGKIIHALVITMG--LH--DNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 435 ~ll~-a~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
.+.. .|. +.+.++++..+-..++... .. .....+-.+.-+|...- ....+|. -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HH
Confidence 3333 332 4566666666655555421 10 11112222222222110 0000110 01
Q ss_pred CCChhHHHHHHHHHHhcC-CCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHH
Q 001852 509 KEEPDKALKAYKRMREEG-TPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSN 587 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 587 (1004)
.....++++.+++-++.+ -.|+..-|.++-.|-. +.+..+.+......+.+-..+...|.-|.-.+...+++.+|.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~---R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ---RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH---HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 111345566666655532 3344444433333222 234444444444444444445555555555556666666666
Q ss_pred HHHhcC
Q 001852 588 YIFEGL 593 (1004)
Q Consensus 588 ~~f~~~ 593 (1004)
.+.+..
T Consensus 534 ~vvd~a 539 (799)
T KOG4162|consen 534 DVVDAA 539 (799)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-07 Score=95.10 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=183.4
Q ss_pred hhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHhhhcCCCCChhhH
Q 001852 560 LTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAM---IAANALHGQGEEVLKLLVKMRHTGVYFDRFSL 636 (1004)
Q Consensus 560 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 636 (1004)
...++.|+....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|+.++...+...+.... +-....+
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 345667888888888888899999999999987766655544443 233467788888777777765431 1112222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC--C-CChhHHHHHHHHHHhcC
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV--D-RPRLSWNILISVFARHG 713 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g 713 (1004)
..-....-...+.+.|..+-+..++.... +...+-.-..++...|+.++|.-.|.... . -+..+|..|+..|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 22223334455666666666555554321 22222222345667788888888887654 3 36778888888888888
Q ss_pred CHHHHHHHHHHHhhccCCCHhHHHHHH-HHHhc-cCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHH
Q 001852 714 YFQKAIETFDEMLKYVKPDHVTFVSLL-SACNH-GGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAET 790 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~ 790 (1004)
..+||.-+-+.....++.+..+...+. ..|.- ...-++|..++++-. .+.|+- .....+..++.+.|+.+++..
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 888888888877765555666666553 34433 234577888877764 456653 455667788888888888888
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 791 FINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 791 ~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
++++. ...||....+.|....+..+.+..|...+..++.++|+|
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88876 677888888888888888888888888888888888876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=119.11 Aligned_cols=242 Identities=14% Similarity=0.024 Sum_probs=176.9
Q ss_pred ChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHh---------hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcC
Q 001852 613 QGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAA---------KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCG 682 (1004)
Q Consensus 613 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 682 (1004)
..++|+.+|++..+ ..|+.......+ .++. ..++.++|...+..+++.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 34677777777765 456543322222 2222 2234677888877777664 236677888888999999
Q ss_pred ChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHH
Q 001852 683 EIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNT 758 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 758 (1004)
++++|...|++... | +...|..+...+...|+.++|+..+++.++. .|+. ..+..++.++...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999998764 3 4567888999999999999999999999984 6643 3344455567778999999999999
Q ss_pred hHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 759 MTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLV-WRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 759 m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~-~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
..+. .+|+ ...+..+..+|...|++++|.+.+.++ +..|+... ++.|...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8753 2353 455777889999999999999999887 66677554 444444555556 588888888888665555
Q ss_pred CCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 836 SSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 836 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.....+..+|+-.|+-+.+... +.+++
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 5566699999999999988888 55544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-07 Score=102.99 Aligned_cols=399 Identities=13% Similarity=0.065 Sum_probs=253.6
Q ss_pred hCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhh-H
Q 001852 459 MGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYIT-F 534 (1004)
Q Consensus 459 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~ 534 (1004)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|....|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 35667899999999999999999999999998653 3456799999999999999999999988766443454444 4
Q ss_pred HHHHHhhcCCcchhhcccchhhhhhhh--ccc--CchhHHhHHhhHHHHcC-----------ChhhHHHHHhcCCCC---
Q 001852 535 ANVLGACLNPGDLLIHGMPIHTHIVLT--GFE--SHKYVQNSLITMYAKCG-----------DLNSSNYIFEGLAEK--- 596 (1004)
Q Consensus 535 ~~ll~a~~~~~~~~~~~~~i~~~~~~~--g~~--~~~~~~~~Li~~y~k~g-----------~~~~A~~~f~~~~~~--- 596 (1004)
...-+.|....+..++|..+-..++.. +.. ..+..+-.+.-+|...- .-.++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444455666656777777766666652 111 12333444444443221 122344455544322
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCC--------
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK-LGFDLD-------- 667 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~-------- 667 (1004)
|+..---+.--|+..++.+.|++..++....+-.-+...+..+.-.++..+++.+|..+.+.... .|....
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33222223345677788899999999888876667777777777777888888888888766543 222110
Q ss_pred ----------hhHHhHHHhhHH------hcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001852 668 ----------PFVTNAAMDMYG------KCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIETFDEML 726 (1004)
Q Consensus 668 ----------~~~~~~li~~y~------k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 726 (1004)
..+...+++..- ..|+-....+.+..+. ..|.++-..-+.+... -+.+.+..-.. +.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cC
Confidence 011111111111 1111111222222221 1122222222222222 11111110000 22
Q ss_pred hc-cCC--CH------hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 727 KY-VKP--DH------VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 727 ~~-~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
.. +.| +. ..|......+...+..++|+..+.+.. ++.| ....|.-....+...|+++||.+.+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22 333 32 245556678889999999998877775 4444 3356666778888999999999877665
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 796 PVTPNDL-VWRSLLASSKIHGNVELAKK--AAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 796 ~~~p~~~-~~~~ll~~~~~~g~~e~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
-+.|+.+ +..+|...+...|+-..|+. +...++++||.++.+|..|+.++-+.|+.++|.+-...--
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 7888855 77888888888899888888 9999999999999999999999999999999999766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-06 Score=92.26 Aligned_cols=525 Identities=15% Similarity=0.194 Sum_probs=306.4
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh
Q 001852 264 PVANSLISMFGNFGSVKEARCIFDSMHV-----RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA 338 (1004)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 338 (1004)
.+|-.-+....+.|++...+..|++... .-...|...+.-....|-++-++.++++..+. .| ..-.--+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 4555566666778888888888876432 13445777787777788888888888887753 23 335555666
Q ss_pred hcCCCChhhHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCC---hhhHHHHHhcCCCC--C--cchHHHHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKL------ALNSNVWVCNTLLAMYSEAGR---SEDAKFVFQEMSER--D--SVSWNSLVASH 405 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~~--~--~~~~~~li~~~ 405 (1004)
++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+ --....+++.+..+ | -..|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 77788888888888776532 224455566666665555432 22334455555443 2 45789999999
Q ss_pred HcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHccCChHHH
Q 001852 406 VQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVI-TMGLHDNLIVGNALVSMYAKSGMMSEA 484 (1004)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~A 484 (1004)
.+.|.+++|.++|++-.+.- ....-|+.+..+++.-.....+..+- ... +.|-.-+. -+++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHHH
Confidence 99999999999998876542 22333445555544322111111111 000 00101011 112222
Q ss_pred HHHHhcCCC---------------CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhh
Q 001852 485 KQVFRIMPK---------------RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLI 549 (1004)
Q Consensus 485 ~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 549 (1004)
..-|+.+.. .++..|..-+. ...|++.+-...|.+..+. +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 222332221 24445554443 2356667777777776653 3332111
Q ss_pred cccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHH
Q 001852 550 HGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN-------SVTWNAMIAANALHGQGEEVLKLLV 622 (1004)
Q Consensus 550 ~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~ 622 (1004)
..-...|..+.+.|-..|+++.|+.+|++..+-+ ...|-.-...=.++.+++.|+++.+
T Consensus 384 --------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 384 --------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred --------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1122457788999999999999999999886542 2356666666678889999999888
Q ss_pred HhhhcCCCCC-----------------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChh
Q 001852 623 KMRHTGVYFD-----------------RFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG 685 (1004)
Q Consensus 623 ~m~~~g~~pd-----------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 685 (1004)
......-.|. ...+...++---..|.++..+.+++.+++..+.. +.+.-...-.+....-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHH
Confidence 8764322211 1123333444445667777788888887766542 222222233345556678
Q ss_pred hHhhhcCCCCC----CCh-hHHHHHHHHHHh-cC--CHHHHHHHHHHHhhccCCCHhHHHHHHHHH--hccCCHHHHHHH
Q 001852 686 DVLRIAPQPVD----RPR-LSWNILISVFAR-HG--YFQKAIETFDEMLKYVKPDHVTFVSLLSAC--NHGGLVDKGLQY 755 (1004)
Q Consensus 686 ~A~~~~~~~~~----~~~-~~~~~li~~~~~-~g--~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~--~~~g~~~~a~~~ 755 (1004)
++.+++++... |++ ..||+.+.-+.+ .| ..+.|..+|++.++..+|...-+.-|+.|- ..-|+...|+.+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888887663 454 478887766543 23 678899999998887667554333344332 345888888888
Q ss_pred HHHhHhhcCCCCC--CchHHHHHH----HHHh---cCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 001852 756 YNTMTTEFGVPAG--IEHCVCIID----LLGR---SGRLAEAETFINKMPVTPNDL---VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 756 ~~~m~~~~~~~p~--~~~y~~lv~----~l~r---~g~~~eA~~~i~~m~~~p~~~---~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
+++... ++++. ...|+..|. .||- .+-+++|.+. + |+.. .---+..--.+.|.++.|..+
T Consensus 609 yerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L---p~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 609 YERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L---PDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 888765 44443 244554332 2321 1223333332 2 3332 222333344567888888888
Q ss_pred HHHHHhc-CCC-CCCCeehhhhHhhhcCC
Q 001852 824 AEHLFEL-DPS-DDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 824 ~~~~~~l-~p~-~~~~~~~l~~~y~~~g~ 850 (1004)
+...-++ +|. ++..+...-+.=.+.|+
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 8888885 454 23355555555566676
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-08 Score=111.90 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=114.9
Q ss_pred hHHhHHhhHHHHcCChhhHHHHHhcCCCC----------CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCCh
Q 001852 568 YVQNSLITMYAKCGDLNSSNYIFEGLAEK----------NSV-TWNAMIAANALHGQGEEVLKLLVKMRHT---GVYFDR 633 (1004)
Q Consensus 568 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~ 633 (1004)
.+..-|..+|...|+++.|..+|+...+. .+. .-+.+...|...+++.+|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455788888888888888887654322 111 2233455666667777777776666431 000111
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcC
Q 001852 634 FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHG 713 (1004)
Q Consensus 634 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 713 (1004)
+.-..+++.|..+|.+.|++++|...++.
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~-------------------- 308 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCER-------------------- 308 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHH--------------------
Confidence 01122334455556666666665554332
Q ss_pred CHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC------chHHHHHHHHHhcCChH
Q 001852 714 YFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI------EHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~y~~lv~~l~r~g~~~ 786 (1004)
|++++++......|+.. -+..+...|.+.+.+++|..++....+.+.-.|.. .+|+.|..+|-..|+++
T Consensus 309 ----Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 309 ----ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred ----HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 22222221110122211 23344445555555555555555444433311211 34555555555555555
Q ss_pred HHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCC---CeehhhhHhhhcC
Q 001852 787 EAETFINKM-------PV--TPN-DLVWRSLLASSKIHGNVELAKKAAEHLFE----LDPSDDS---SYVLYSNVCAATG 849 (1004)
Q Consensus 787 eA~~~i~~m-------~~--~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~----l~p~~~~---~~~~l~~~y~~~g 849 (1004)
||++++++. .. .+. ...++.|..+|...++.+.|.+.++.... ..|+.|+ .|-.|+-+|.+.|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 555555543 01 111 22344555555555555555555555444 2344433 3444555566666
Q ss_pred CchHHHHHHH
Q 001852 850 RWDDVENVRR 859 (1004)
Q Consensus 850 ~~~~a~~~~~ 859 (1004)
++++|.++-.
T Consensus 465 ~~e~a~~~~~ 474 (508)
T KOG1840|consen 465 NYEAAEELEE 474 (508)
T ss_pred cHHHHHHHHH
Confidence 6666665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-05 Score=87.55 Aligned_cols=567 Identities=14% Similarity=0.137 Sum_probs=294.3
Q ss_pred CCCCCcchhhhHHHHhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCChhhHHHHH
Q 001852 157 GLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRRE-GVCCNENTFAAVI 235 (1004)
Q Consensus 157 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll 235 (1004)
+..|....|-.+-++ ++.+...+.+||. .|-.-+.-+.++|+.......|++.... -+.-....+...+
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 344555555555444 4666777777763 5666677777888888888887776543 3444455667777
Q ss_pred HHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC----------cchHHHHHHHHH
Q 001852 236 TSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD----------TISWNSMISVYS 305 (1004)
Q Consensus 236 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d----------~~~~~~li~~~~ 305 (1004)
+-....+-++.+..++...++.. +..-+--|..+++.+++++|.+.+......| -..|+-+-...+
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 77777777777777777666543 2335566677777777777777776665332 222333333222
Q ss_pred hCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHH
Q 001852 306 HSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKF 385 (1004)
Q Consensus 306 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 385 (1004)
++-+.-..+. ...+...++..-...=...|++|.+-|.+.|.++.|+.
T Consensus 222 ~~p~~~~sln--------------------------------vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 222 QNPDKVQSLN--------------------------------VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred hCcchhcccC--------------------------------HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 2221111111 11111111111111123567777777777777777777
Q ss_pred HHhcCCCC--CcchHHHHHHHHHcCC----------------C------HHHHHHHHHHhhhcCC----------cC-CH
Q 001852 386 VFQEMSER--DSVSWNSLVASHVQDE----------------K------YIDALKIFSNMLQKQR----------LV-NY 430 (1004)
Q Consensus 386 ~f~~m~~~--~~~~~~~li~~~~~~g----------------~------~~~A~~l~~~m~~~g~----------~p-~~ 430 (1004)
+|++.... .+.-++.+-.+|++-. + .+-.+.-|+.+...+. .| +.
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 77765442 2333444444443321 1 1122223333332210 01 11
Q ss_pred hhHHHHHHhhcCCCChHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCee-------c
Q 001852 431 VTFTSALAACSDPGFVVQGKIIHALVITMG-----LHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTV-------T 498 (1004)
Q Consensus 431 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-------~ 498 (1004)
.++..-. -...|+..+-...+.+.++.= ...-...+..+.+.|-..|+++.|+.+|+...+-+-. +
T Consensus 350 ~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 1111111 122345556666677766541 1122346788899999999999999999987754333 3
Q ss_pred hhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHH
Q 001852 499 WNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYA 578 (1004)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~ 578 (1004)
|-.-...=.++.+++.|+++.++... .|.... + ...+.+..+ ...+..+..+|...++.--
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-------~~yd~~~pv-----Q~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-------EYYDNSEPV-----QARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-------hhhcCCCcH-----HHHHHHhHHHHHHHHHHHH
Confidence 43333444556777788777666543 232211 1 111111111 1112234567777888888
Q ss_pred HcCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChh-hHHHHHHHHh---hhhhHHH
Q 001852 579 KCGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRF-SLSEGLAAAA---KLAVLEE 651 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---~~~~~~~ 651 (1004)
.+|-++....+++.+.+--+.|=..++ --+-.+..++++.+.|++-...=--|+.. .++..|..+. ....++.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 889999999999988754222222222 22345667889999988766542234432 3444444332 2234777
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 001852 652 GHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP 731 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p 731 (1004)
++.+|++..+ |.+|. ....+.-+|++ ---.+|-...|++++++....++|
T Consensus 569 aRdLFEqaL~-~Cpp~--~aKtiyLlYA~---------------------------lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPE--HAKTIYLLYAK---------------------------LEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHh-cCCHH--HHHHHHHHHHH---------------------------HHHHhhHHHHHHHHHHHHHhcCCH
Confidence 7777777777 44332 12222222321 112345666666666665554444
Q ss_pred CH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHH
Q 001852 732 DH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI---EHCVCIIDLLGRSGRLAEAETFINKMP--VTP--NDL 802 (1004)
Q Consensus 732 d~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~p--~~~ 802 (1004)
.. ..|+..+.--...==+...+.+|++.++. -|+. +...-..++=.+.|.++.|..++.--. ..| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChH
Confidence 22 23444333111111122233444444432 1221 222234455566777777777665431 223 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
.|.+.=.--..|||-+.-+.+
T Consensus 696 fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 566665556677775444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-05 Score=84.70 Aligned_cols=542 Identities=13% Similarity=0.081 Sum_probs=257.1
Q ss_pred HHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHH
Q 001852 235 ITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSL 314 (1004)
Q Consensus 235 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 314 (1004)
+.+..+...+..|..+++.+...... ..-|.-+.+.|+..|+++.|+++|-+.. .++--|..|.++|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 44455666777777777766544321 2235566777888888888888887643 3566677788888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC-C
Q 001852 315 KCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE-R 393 (1004)
Q Consensus 315 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~ 393 (1004)
++-.+.. |.......|..-..-+-..|.+.+|++++-.+- .|+ .-|.||-+.|..++..++..+-.. .
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 8765543 333344445444444556667777766653221 122 346677777777777777655321 1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHH--------------HHHHh
Q 001852 394 DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHA--------------LVITM 459 (1004)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------------~~~~~ 459 (1004)
-..+.-.+..-|-..|+...|.+-|-+... |.+.+..|...+.++.|.++-. .....
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 122333444555556666666655544322 2223333333333333332211 01111
Q ss_pred CCCCchH------HHHHHHHHHHccCChHHHHHHHhcCC-CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChh
Q 001852 460 GLHDNLI------VGNALVSMYAKSGMMSEAKQVFRIMP-KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYI 532 (1004)
Q Consensus 460 g~~~~~~------~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 532 (1004)
|=..-+. ...+-|+..+..+.++-|.++-+-.. .+.....-.+..-+-..|++++|-+-|-+..+.+ .-.+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln--tyni 1029 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNI 1029 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc--cccc
Confidence 1100000 11222334444455555554433221 1112222223333456788888887777765532 2222
Q ss_pred hHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhc
Q 001852 533 TFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALH 611 (1004)
Q Consensus 533 t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 611 (1004)
|+...+. ..+-...++.|-.|.. -+.|+.+..++..|.++-+.--+. -...++.-..+-...
T Consensus 1030 twcqavp------------srfd~e~ir~gnkpe~-----av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee 1092 (1636)
T KOG3616|consen 1030 TWCQAVP------------SRFDAEFIRAGNKPEE-----AVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEE 1092 (1636)
T ss_pred hhhhccc------------chhhHHHHHcCCChHH-----HHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccc
Confidence 3321111 1112233444544433 345666777777777665432211 111222222333333
Q ss_pred CChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH----------------HHHHHHhCCCCChhHHhHHH
Q 001852 612 GQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL----------------HGLATKLGFDLDPFVTNAAM 675 (1004)
Q Consensus 612 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~----------------~~~~~~~g~~~~~~~~~~li 675 (1004)
|++.+|..++-+. -+||.. |.-+...+.+..|..+ -....+.|-. .+..+.+-.
T Consensus 1093 ~d~~kae~fllra----nkp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqa 1162 (1636)
T KOG3616|consen 1093 GDFLKAEGFLLRA----NKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQA 1162 (1636)
T ss_pred cchhhhhhheeec----CCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHH
Confidence 4444444333221 122211 1111122222222211 1111222211 111122222
Q ss_pred hhHHhcCChhhHhhhcCCC---------------------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 676 DMYGKCGEIGDVLRIAPQP---------------------------VDRPRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 676 ~~y~k~g~~~~A~~~~~~~---------------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.-..+.|++..|...+-++ ...|.....+...++-..|.-+.|.+++--.-.
T Consensus 1163 k~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~- 1241 (1636)
T KOG3616|consen 1163 KEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL- 1241 (1636)
T ss_pred HHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh-
Confidence 2333444444444333322 122223333333444444444444443322110
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH---------------hhcCCCC---CCchHHHHHHHHHhcCChHHHHH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT---------------TEFGVPA---GIEHCVCIIDLLGRSGRLAEAET 790 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~p---~~~~y~~lv~~l~r~g~~~eA~~ 790 (1004)
-.-.+++++....|.+|.++-+... +.-|--- +++ ...-+|++...|+|++|.+
T Consensus 1242 -------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~id 1313 (1636)
T KOG3616|consen 1242 -------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAID 1313 (1636)
T ss_pred -------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHH
Confidence 0114556666666666665544331 1111100 111 2235789999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh-cCCCCCCCeehh
Q 001852 791 FINKMPVTPNDLVWRSLLASSKIH-GNVELAKKAAEHLFE-LDPSDDSSYVLY 841 (1004)
Q Consensus 791 ~i~~m~~~p~~~~~~~ll~~~~~~-g~~e~a~~~~~~~~~-l~p~~~~~~~~l 841 (1004)
..++-..+|-..-|-++-.+..+| |+...+..++++-=. -+|.|..+|-++
T Consensus 1314 tak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i 1366 (1636)
T KOG3616|consen 1314 TAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLI 1366 (1636)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 988887777666666666665555 788888887776433 355555555433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-06 Score=88.73 Aligned_cols=436 Identities=14% Similarity=0.069 Sum_probs=237.6
Q ss_pred HHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 373 MYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 373 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
.|.+.|++++|..++..+.+ ++...|-.+.-.+.-.|.+.+|..+-.+.. -+......++...-+.++-+.-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHH
Confidence 44455555555555554433 233444444444444555555555443321 1222333344444455666666
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCeechhhhh-HHhhhCCChhHHHHHHHHHHhcC
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDTVTWNALI-GGHSEKEEPDKALKAYKRMREEG 526 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g 526 (1004)
..+|..+... ..---+|..+.-..-.+.+|.+++.++. .|+....|.-+ -.|.+...++-+.++++--.+.
T Consensus 141 ~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 6666655432 1222234444444456788888888776 34444555433 3566777777777777665552
Q ss_pred CCCChhhHHHHHHhhcCCcchh--hcccchhhhhhhhcccCchhHHhHHhhHHHHc-----CChhhHHHHHhcCCCCCHh
Q 001852 527 TPMNYITFANVLGACLNPGDLL--IHGMPIHTHIVLTGFESHKYVQNSLITMYAKC-----GDLNSSNYIFEGLAEKNSV 599 (1004)
Q Consensus 527 ~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-----g~~~~A~~~f~~~~~~~~~ 599 (1004)
-|| .|+..-|.+|..- ..+ ..+.+-...+.+.+-.. -..+.-.++. ..-+.|.+++-.+.+.-+.
T Consensus 215 -~pd-StiA~NLkacn~f-Rl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 215 -FPD-STIAKNLKACNLF-RLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred -CCC-cHHHHHHHHHHHh-hhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 344 3444444455322 100 00111111111111100 0111112221 2234555555444333333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh-----hhhhHHHHHHHHHHHHHhCCCCChhHHhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA-----KLAVLEEGHQLHGLATKLGFDLDPFVTNAA 674 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 674 (1004)
+--.|+--|.+.++..+|..+.+++.- ..|-+..+-.+..+-. ....+.-|.+.+..+-..+.+-|..
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----- 359 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI----- 359 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-----
Confidence 444566678899999999998887643 3444443333333211 1122344555555544444333321
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.--.+|.+.+.-..++++.+..+.....-+..|.+--..+..|.+..|.+.+|.+
T Consensus 360 -------------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 360 -------------------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred -------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 1234566666666778888888887776634433333348899999999999999
Q ss_pred HHHHhHhhcCCCCCCchHH-HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 755 YYNTMTTEFGVPAGIEHCV-CIIDLLGRSGRLAEAETFINKMPVTPNDLVWR-SLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~-~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~-~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
+|-+.... .+. +...|. .+..+|.+.|+.+-|.+++-++....+..+.. -...-|++.+.+=-|-+++..+-.+||
T Consensus 415 lf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 415 LFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 99877531 222 223444 45678999999999999998886555555444 445569999999999999999888888
Q ss_pred CCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 833 SDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 833 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
.. .+| .|+-.....+...+-.......|+
T Consensus 493 ~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 493 TP-ENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred Cc-ccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 53 322 245555566666665544444454
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-08 Score=100.12 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...+..+...|...|++++|++.|++.... .|+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHH
Confidence 456777788888889999999988887653 2331 2233344445
Q ss_pred HHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-CHhHHHHHHHHHhccCCHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-DHVTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d~~t~~~ll~a~~~~g~~~~a 752 (1004)
|...|++++|.+.+++... .+...|..+...+...|++++|++.|++.... ..| +...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 23456666777777788888888888887764 222 344566677777888888888
Q ss_pred HHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 753 LQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 753 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
...|++..+.. +.+...+..++.++...|++++|.+.+++. ...| +...|..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888776531 223456667778888888888888877765 2223 3445556666677778888888888877665
Q ss_pred CC
Q 001852 831 DP 832 (1004)
Q Consensus 831 ~p 832 (1004)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 44
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-05 Score=88.94 Aligned_cols=527 Identities=14% Similarity=0.159 Sum_probs=241.6
Q ss_pred cCCChhhHHHhhccCC-CCch-hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 174 TYGHINKARRVFEEMP-VRNV-VSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 174 ~~g~~~~A~~~f~~m~-~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
..|+++.|..+++... -|+. ..|-.+...-...|+..-|.+.|. ..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa----------------------ai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA----------------------AIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH----------------------HHHHHHHHHHHH
Confidence 3477777777777654 3443 346666655556666555555443 335555566655
Q ss_pred HHHH-------HhcC-CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 001852 252 GHVI-------KFGF-HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHV 323 (1004)
Q Consensus 252 ~~~~-------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 323 (1004)
+... +.|- ..+-+-..+++.+..+ ++.+|+.+|-+-. ++ ..-|..|....+|++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHh---c
Confidence 5432 1221 1222333444444433 5677777765422 11 2334555566667776665432 1
Q ss_pred CCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCC--CCCcchHHHH
Q 001852 324 GQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS--ERDSVSWNSL 401 (1004)
Q Consensus 324 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~l 401 (1004)
|.+.-...-.+-++++...|+-+.|-++- .+..-.-+-|..|.+.|.+..|.+.-..-. ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 22211222233444555555544443321 111112345677777777766665442211 2344444455
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHH-HHHHHHHHccCC
Q 001852 402 VASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVG-NALVSMYAKSGM 480 (1004)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~ 480 (1004)
..++.+..-+++|-++|+++.. +.-.+..+.+-..+..|.++-+.. ++..+... .+--.-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 5555555566666666665532 111111111111122222221111 11111100 111122233344
Q ss_pred hHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhh
Q 001852 481 MSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVL 560 (1004)
Q Consensus 481 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~ 560 (1004)
++.|..-|-+... .-.-|.+-.....+.+|+.+++.++.....
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~~-------------------------------- 764 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKTA-------------------------------- 764 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--------------------------------
Confidence 4444433322110 001122223334444444444443332110
Q ss_pred hcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 561 TGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 561 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
..-|..+.+-|+..|+++.|.++|.+.. .++--|..|.++|++++|.++-.+..
T Consensus 765 ------s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--------------- 818 (1636)
T KOG3616|consen 765 ------SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--------------- 818 (1636)
T ss_pred ------cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc---------------
Confidence 0112334455555555555555554332 23334455555555555555544332
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
|.+.....|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|..+..++
T Consensus 819 ----------------------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 819 ----------------------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIR 871 (1636)
T ss_pred ----------------------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHH
Confidence 22223333333334445556666666666655555532 455666666666666
Q ss_pred HHHHHhhccCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCC--
Q 001852 721 TFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP-- 796 (1004)
Q Consensus 721 l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-- 796 (1004)
+.++ ..||. .|-..+..-+...|++.+|...|-.... +..-|++|-..+.|++|..+.+.-.
T Consensus 872 lv~k----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 872 LVEK----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHH----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 5554 23433 3445555666666777666666554432 4455666666677777776665431
Q ss_pred -CCCC-HHHHHHHHH------HHHhcCCHHHHHHH------HHHHHhc-----CCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 797 -VTPN-DLVWRSLLA------SSKIHGNVELAKKA------AEHLFEL-----DPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 797 -~~p~-~~~~~~ll~------~~~~~g~~e~a~~~------~~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+.. ...|.-=++ ..-+||-++.|... ++-++++ ...-+..++-++-.+...|++++|.+-
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHh
Confidence 1111 123321111 12344544444432 1222221 223345677777777788888888664
Q ss_pred H
Q 001852 858 R 858 (1004)
Q Consensus 858 ~ 858 (1004)
+
T Consensus 1018 y 1018 (1636)
T KOG3616|consen 1018 Y 1018 (1636)
T ss_pred h
Confidence 3
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-07 Score=95.19 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=151.3
Q ss_pred cCChHHHHHHHhcCCCC---CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccch
Q 001852 478 SGMMSEAKQVFRIMPKR---DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 478 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
.|++..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+. .+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~------------------------- 149 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AG------------------------- 149 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CC-------------------------
Confidence 47888888877664432 2233333344455667777777777666552 11
Q ss_pred hhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 001852 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL---AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYF 631 (1004)
Q Consensus 555 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 631 (1004)
.++..+.-+........|+++.|..-.++. ..+++........+|.+.|++.+.+.++.+|.+.|+--
T Consensus 150 ---------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 150 ---------DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred ---------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 223334445556667788888888777655 34578888888999999999999999999999888766
Q ss_pred Ch-------hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC--ChhHH
Q 001852 632 DR-------FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR--PRLSW 702 (1004)
Q Consensus 632 d~-------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~ 702 (1004)
|+ .++..+++-+...+..+.-+..+....+ ....++.+..+++.-+..||+.++|.++.++..++ |..
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 54 3455555555444444443344443322 22334555555666666666666666555544332 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 782 (1004)
-.....+.+-++...-++..++-.+..+.++-.+..|...|.+.+.|.+|..+|+... ...|+.++|+-+.+.|.+.
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQL 374 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHc
Confidence 1111222334444444444444444322233444445555555555555555555433 3344445555555555555
Q ss_pred CChHHHHHHHH
Q 001852 783 GRLAEAETFIN 793 (1004)
Q Consensus 783 g~~~eA~~~i~ 793 (1004)
|+.++|.+..+
T Consensus 375 g~~~~A~~~r~ 385 (400)
T COG3071 375 GEPEEAEQVRR 385 (400)
T ss_pred CChHHHHHHHH
Confidence 55544444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=106.75 Aligned_cols=209 Identities=13% Similarity=0.065 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHhC-CCC--ChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLG-FDL--DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
+..+.+..-+..++... +.| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555322 222 245577788889999999999999887663 356789999999999999999999
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PV 797 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~ 797 (1004)
.|++.++ +.| +..++..+..++...|++++|.+.|+...+. .|+.........++.+.++.++|.+.+.+. ..
T Consensus 120 ~~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE-LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988 466 5678888888899999999999999988753 444322222223445678899999988654 23
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAEHLF-------ELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.|+...|. -.....|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|....+...+
T Consensus 196 ~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34332231 222334554433 2333333 56677778899999999999999999998766544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-08 Score=93.63 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDL 778 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 778 (1004)
+...+.-+|.+.|+...|.+-+++.++. .| +..++..+...|...|..+.|.+.|++..+ +.|+ .+..+....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 3556778999999999999999999985 55 667899999999999999999999999864 5664 4777888888
Q ss_pred HHhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 779 LGRSGRLAEAETFINKM---PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m---~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
||..|++++|...+++. |..|. +.+|.++..+-.+.|+.+.|+..+++.++++|+++.....+++.....|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999887 44444 348888888778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 001852 855 ENVRRQMGWNKI 866 (1004)
Q Consensus 855 ~~~~~~m~~~~~ 866 (1004)
.-..+....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 988777665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-08 Score=107.26 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc----cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHhhc----CCCC-CC
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKY----VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTTEF----GVPA-GI 769 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~----~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p-~~ 769 (1004)
+.+...|...+++++|+.+|++++.. .-++ ..|+..|..+|...|++++|..+++...+.+ +..+ .+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 35667788888888888888888754 2233 3577788889999999999999988876543 2222 22
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------
Q 001852 770 -EHCVCIIDLLGRSGRLAEAETFINKM------PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELD------- 831 (1004)
Q Consensus 770 -~~y~~lv~~l~r~g~~~eA~~~i~~m------~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~------- 831 (1004)
.-++.++.+++..+++++|..++... .+.++ +.++..|...+...|++++|+.+++++++..
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 44677888999999999999988664 12233 2489999999999999999999999999953
Q ss_pred -CCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 832 -PSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 832 -p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+.....+..|+..|...+++.+|.++...-+
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2223356788889999999999888765443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-06 Score=93.17 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=134.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQK 717 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 717 (1004)
.++....+-++..+.|....+.+. -++.+|..-.+++.-.+++++|..=|++...- ++..|-.+..+.-+.+++++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 25556666777777888899999999887653 45667777777777889999
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------CchHHHHHHHH-HhcCChHHHH
Q 001852 718 AIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-------IEHCVCIIDLL-GRSGRLAEAE 789 (1004)
Q Consensus 718 A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~y~~lv~~l-~r~g~~~eA~ 789 (1004)
++..|++..+.++.-...|+....++...+++++|.+.|+..++ ++|+ +..+..-.-+. .=.+++.+|.
T Consensus 447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 447 SMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence 99999999988666677888888999999999999999998874 3333 22221111111 2248899999
Q ss_pred HHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 790 TFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 790 ~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+++++. .+.|... .+.+|...-...|++++|+.++|+...+-
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999987 7777754 78888888889999999999999987764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-07 Score=92.01 Aligned_cols=284 Identities=11% Similarity=0.007 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHH
Q 001852 408 DEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQV 487 (1004)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 487 (1004)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+.++..++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666654443332 2334444555566677777777777766654456677777778888888888888877
Q ss_pred HhcCC---CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhccc
Q 001852 488 FRIMP---KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFE 564 (1004)
Q Consensus 488 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~ 564 (1004)
.+... .+++.........|.+.|++.+.+.++.+|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 76654 45777888888999999999999999999999886544321100
Q ss_pred CchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 565 SHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 565 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
...+++.+++-....+..+.-...++..+.+ ++..-.+++.-+.+.|+.++|.++..+-.+.+..|.-. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 0011222222222222223333344555432 45555666667777777777777777777766666511 122
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC--CCChhHHHHHHHHHHhcCCHHHHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV--DRPRLSWNILISVFARHGYFQKAI 719 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 719 (1004)
.+...++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|.+.|+... .++...|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 2333333333333333322221 1233444555555555555555555555433 234444555555555555555555
Q ss_pred HHHHHHh
Q 001852 720 ETFDEML 726 (1004)
Q Consensus 720 ~l~~~m~ 726 (1004)
+.+++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-08 Score=112.76 Aligned_cols=209 Identities=11% Similarity=0.008 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH---------hcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCC
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG---------KCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGY 714 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 714 (1004)
+.+++|.+.+...++.... +...+..+...|. ..|++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567888888888765432 3445555555544 23457899999988764 356789999999999999
Q ss_pred HHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHH
Q 001852 715 FQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 715 ~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
+++|+..|++.++. .| +...+..+..++...|++++|...+++..+. .|.. ..+..+..++...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999985 66 5667888899999999999999999999754 4543 22333444566789999999998
Q ss_pred HhCC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 793 NKMP--VTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 793 ~~m~--~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
++.- ..|+.. .+..+..++...|+.++|+..++++....|.+......|+..|...| ++|....+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 8762 235443 56666666778899999999999999999988888888888888888 46666444343
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-06 Score=94.50 Aligned_cols=402 Identities=15% Similarity=0.156 Sum_probs=240.6
Q ss_pred CCcchhhhHHH--HhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHc-C-------CCCChh
Q 001852 160 CDVFVGTSLLH--FYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRRE-G-------VCCNEN 229 (1004)
Q Consensus 160 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-------~~p~~~ 229 (1004)
.|..+-.++++ .|...|+.|.|.+-.+.+. +.+.|..|.+.|++..+.+-|.-.+..|... | .+-+..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 35566666664 5788899999988877764 5578999999999999998888777777542 2 112223
Q ss_pred hHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCC-CcchHHHHHHHHHhCC
Q 001852 230 TFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVR-DTISWNSMISVYSHSG 308 (1004)
Q Consensus 230 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g 308 (1004)
+-..+.-.....|.+++|+.++....+.. .|=..|-..|.+++|.++-+.-..- =..||.--..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333334457888999999998887753 3455677789999998886543211 1124444445555567
Q ss_pred CchhHHHHHHHH----------HHcC---------CCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH
Q 001852 309 LCDQSLKCFHWM----------RHVG---------QEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT 369 (1004)
Q Consensus 309 ~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 369 (1004)
+.+.|++.|++- .... -.-|...|.-.-.-+-..|+.+.|..++..... |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 777777777542 1111 112333444444445566777777777765443 456
Q ss_pred HHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCC-----
Q 001852 370 LLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPG----- 444 (1004)
Q Consensus 370 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~----- 444 (1004)
++...|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+.+ +|...|+.|-..+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 6777777888888888877643 55667778888999999999999998765 3444554443322
Q ss_pred ----------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--------------CCeechh
Q 001852 445 ----------FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--------------RDTVTWN 500 (1004)
Q Consensus 445 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------~~~~~~~ 500 (1004)
+.-.+..++++. |. -....+-.|-|.|.+.+|+++--+-.+ .|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 222222333221 11 122344567788888888776333221 2455555
Q ss_pred hhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhh--hhcccC---chhHHhHHhh
Q 001852 501 ALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIV--LTGFES---HKYVQNSLIT 575 (1004)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~--~~g~~~---~~~~~~~Li~ 575 (1004)
.-..-|+.+.++++|..++-..++ |...+..|...+ +....++-+.|. +.+..+ -..+...+.+
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n--v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN--VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC--CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 566667788889999888876654 344455554431 111111111111 111111 1244556667
Q ss_pred HHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEE 616 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 616 (1004)
.+.++|.+..|-+-|.+.-.+ -.-+.++.+.|+.++
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcce
Confidence 777777777777766554432 112344555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-05 Score=87.42 Aligned_cols=366 Identities=16% Similarity=0.116 Sum_probs=217.5
Q ss_pred HccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHhhcCCcchhhcccch
Q 001852 476 AKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMN-YITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 476 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
-+.+..|+|...++....-|..+-..-...+-+.|++++|+.+|+.+.+.+..-- ...-..++.+-+... +.
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~-----~~-- 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ-----VQ-- 162 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh-----HH--
Confidence 3678999999999866554544544455667889999999999999988764432 222223333322220 00
Q ss_pred hhhhhhhcccC--chhHHhHHhhHHHHcCChhhHHHHHhcC--------CCCC-----Hh-----HHHHHHHHHHhcCCh
Q 001852 555 HTHIVLTGFES--HKYVQNSLITMYAKCGDLNSSNYIFEGL--------AEKN-----SV-----TWNAMIAANALHGQG 614 (1004)
Q Consensus 555 ~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~ 614 (1004)
.+......| +-..+-.....+...|++.+|+++++.. .+.| .. .--.|.-.+...|+.
T Consensus 163 --~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 --LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred --HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 111111122 1122223455677899999999999877 2111 11 122345567789999
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHH---HHHhhhhhHHH--------------HHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 615 EEVLKLLVKMRHTGVYFDRFSLSEGL---AAAAKLAVLEE--------------GHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 615 ~~A~~l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~--------------a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
++|..++...+... .+|+....... -+...-..+-. +......+.+.. ......-++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999998863 45553322221 12221111111 111111111111 1123344667777
Q ss_pred HHhcCChhhHhhhcCCCCCCC-hhHHHHHHH-HHH-hcCCHHHHHHHHHHHhhccCCCH--hHHHHHHHHHhccCCHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVDRP-RLSWNILIS-VFA-RHGYFQKAIETFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a 752 (1004)
|. +..+.+++.-...+... .....+++. ++. +.....+|.+++.+.-+. .|+. +.....+......|+++.|
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 75 55667777777666432 233344443 332 233578888888888775 5644 3444556667889999999
Q ss_pred HHHHH--------HhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHh--------CCCCCCHH-HHHHHHHHHHhcC
Q 001852 753 LQYYN--------TMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINK--------MPVTPNDL-VWRSLLASSKIHG 815 (1004)
Q Consensus 753 ~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~--------m~~~p~~~-~~~~ll~~~~~~g 815 (1004)
++++. +..+ .+.. +.....++.++.+.+..+-|..++.+ ++-.+... +|.-+..--..+|
T Consensus 396 ~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 4433 2333 34566788888888876555555543 33444433 4555555556789
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
+-+.|...++++++..|.+....+-|--.|+.. +-+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999998888777777653 3445555433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-07 Score=98.65 Aligned_cols=205 Identities=7% Similarity=-0.073 Sum_probs=138.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...|..+...|...|+.++|...|++..+. .|+ ++..++.+...
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~----------------------------------~~~a~~~lg~~ 107 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL--RPD----------------------------------MADAYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC----------------------------------CHHHHHHHHHH
Confidence 345666666677777777777776666552 232 45677888888
Q ss_pred HHhcCChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
|...|++++|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|..
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-DPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHccCCHHHHHH
Confidence 8899999999988888754 3 4578888999999999999999999999984 6654322222233456788999999
Q ss_pred HHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH--HHHHHh-CC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 755 YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA--ETFINK-MP----VTPN-DLVWRSLLASSKIHGNVELAKKAAEH 826 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA--~~~i~~-m~----~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~ 826 (1004)
.|++... ..+|+...+ .++..+ .|+++++ .+.+.+ .+ ..|+ ..+|..|+..+...|+.+.|+..+++
T Consensus 187 ~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9977654 233433322 333333 4555443 322222 11 2222 34899999999999999999999999
Q ss_pred HHhcCCCC-CCCeehhhhH
Q 001852 827 LFELDPSD-DSSYVLYSNV 844 (1004)
Q Consensus 827 ~~~l~p~~-~~~~~~l~~~ 844 (1004)
+++++|.+ ......+..+
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 99999744 3343334433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-05 Score=85.02 Aligned_cols=427 Identities=13% Similarity=0.113 Sum_probs=225.2
Q ss_pred HHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH--HHHHHH--hcC
Q 001852 303 VYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT--LLAMYS--EAG 378 (1004)
Q Consensus 303 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~g 378 (1004)
-+..+|++++|.....++...+ +-|...+.+=+-+....+.++.|..+.. +.+. ..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666544 3334455555556666666666653322 2111 011111 234444 578
Q ss_pred ChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcC-CHhhHHHHHHhhcCCCChHHHHHHHHHHH
Q 001852 379 RSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV-NYVTFTSALAACSDPGFVVQGKIIHALVI 457 (1004)
Q Consensus 379 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 457 (1004)
..|+|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... +. ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence 89999999986665565566666677889999999999999997765432 222222222221110 11 0112
Q ss_pred HhCCCCc---hHHHHHHHHHHHccCChHHHHHHHhcC--------CCCCee----------chhhhhHHhhhCCChhHHH
Q 001852 458 TMGLHDN---LIVGNALVSMYAKSGMMSEAKQVFRIM--------PKRDTV----------TWNALIGGHSEKEEPDKAL 516 (1004)
Q Consensus 458 ~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~~A~ 516 (1004)
.....|+ ...|| ....+...|++.+|++++... ...|.. .--.|...+-..|+.++|.
T Consensus 166 ~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222221 12333 234566789999999998876 111111 1223445667789999999
Q ss_pred HHHHHHHhcCCCCChhh---HHHHHHhhcCCcchhhcc------cchhhhhhh---hcc----cCchhHHhHHhhHHHHc
Q 001852 517 KAYKRMREEGTPMNYIT---FANVLGACLNPGDLLIHG------MPIHTHIVL---TGF----ESHKYVQNSLITMYAKC 580 (1004)
Q Consensus 517 ~l~~~m~~~g~~p~~~t---~~~ll~a~~~~~~~~~~~------~~i~~~~~~---~g~----~~~~~~~~~Li~~y~k~ 580 (1004)
.++...+... .+|... +..=|.+.... ..+..+ +..+..+.+ ..+ ......-++|+.+|.
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999998864 334322 22222233322 222221 000000000 000 011222345555554
Q ss_pred CChhhHHHHHhcCCCCC-HhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCCCh--hhHHHHHHHHhhhhhHHHHHHH
Q 001852 581 GDLNSSNYIFEGLAEKN-SVTWNAMIAANA--LHGQGEEVLKLLVKMRHTGVYFDR--FSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 581 g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
+..+.++++-...+... ...+.+++.... +...+.+|.+++.+.-+. .|+. ......+.-....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45566777776666543 333444443322 222466677766665543 3333 2333334445667888888887
Q ss_pred HH--------HHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC------CCh----hHHHHHHHHHHhcCCHHH
Q 001852 656 HG--------LATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD------RPR----LSWNILISVFARHGYFQK 717 (1004)
Q Consensus 656 ~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~----~~~~~li~~~~~~g~~~~ 717 (1004)
+. .+.+.+. .+.+..+++.+|.+.++.+.|..++.+... ... ..|.-...--.++|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 3333333 344556677788888777777766665431 111 123333333345677777
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 718 AIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 718 A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
|..+++++.+..++|.-+...++.+|+.. ++++|..
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 77777776664455666666666666654 4445543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=85.84 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCChHHHHHHHHHHHHhC-CCC--chHHHHHHHHHHHccCChHH
Q 001852 408 DEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFVVQGKIIHALVITMG-LHD--NLIVGNALVSMYAKSGMMSE 483 (1004)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 483 (1004)
+.+.++|.++|-+|.+. .|.. .+-.++-+-+.+.|.++.|.++|..+.++- +.. .....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 34566666666666552 1111 112233344555666666777766665541 111 12345567778889999999
Q ss_pred HHHHHhcCCCCC---eechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhh
Q 001852 484 AKQVFRIMPKRD---TVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVL 560 (1004)
Q Consensus 484 A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~ 560 (1004)
|+.+|..+.+.+ ......|+..|-...++++|++.-+++.+.+-++..+-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 999999987633 3456678889999999999999999998866544433221
Q ss_pred hcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHH
Q 001852 561 TGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS 637 (1004)
Q Consensus 561 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 637 (1004)
..|.-|...+.-..+.+.|..++.+..+. .+-+--.+...+...|+++.|++.++...+.+..--..+..
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 11233444444455666677766655433 23333344556667777777777777766654333333444
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 001852 638 EGLAAAAKLAVLEEGHQLHGLATK 661 (1004)
Q Consensus 638 ~ll~a~~~~~~~~~a~~~~~~~~~ 661 (1004)
.+..+|.++|+.+++...+..+.+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555555555555555554444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-05 Score=82.14 Aligned_cols=332 Identities=14% Similarity=0.135 Sum_probs=198.3
Q ss_pred cCchhHHhHHhhHHHHcCChhhHHHHHhcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 564 ESHKYVQNSLITMYAKCGDLNSSNYIFEGL--AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 564 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
+|+...|++.|++=.+-..++.|+.+++.. ..|++.+|---..-=-++|+..-|..+|....+. --|...-..+..
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 444555556666666666666666666654 2456666665555556666666666666665442 122222223333
Q ss_pred HHh----hhhhHHHHHHHHHHHHHhCCCCC-hhHHhHHHhhHHhcCChh---hHhhh-----cCCCCCC---ChhHHHHH
Q 001852 642 AAA----KLAVLEEGHQLHGLATKLGFDLD-PFVTNAAMDMYGKCGEIG---DVLRI-----APQPVDR---PRLSWNIL 705 (1004)
Q Consensus 642 a~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~---~A~~~-----~~~~~~~---~~~~~~~l 705 (1004)
+++ ....++.|.-++...++.-.... ...|..+.+.=-+-|+.. +++-- ++.+... |-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 333 34556677777777666432221 334444444434445443 33321 1222222 45677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCH--h-----HHHHHHHHH---hccCCHHHHHHHHHHhHhhcCCCCCCchHHHH
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDH--V-----TFVSLLSAC---NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCI 775 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~--~-----t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 775 (1004)
+..-...|+.+...++|++.+..++|-. . .|.-+=.+| ....+++.+.++|+...+ -|+-...+++-+
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKi 406 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKI 406 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHH
Confidence 7777777888888888888887766622 1 222121222 346778888888888765 233333444432
Q ss_pred ----HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 776 ----IDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 776 ----v~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.....|+.++..|.+.+-.. ..-|-+-++...+..-...++++....++++.++.+|.|..++.-.+.+=-..|+
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 22334778888888887665 6777777887777777777888888888888888888888888888888778888
Q ss_pred chHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHH
Q 001852 851 WDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEE 903 (1004)
Q Consensus 851 ~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 903 (1004)
|+.|..+.....++...-.|..-|-. -.-|-.....+..+..+|.-|-+
T Consensus 487 tdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 88888888877666555555554411 01122223344555566655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-05 Score=78.09 Aligned_cols=415 Identities=11% Similarity=0.032 Sum_probs=194.2
Q ss_pred HHHhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhh-HHHHHHhhcCCCCh
Q 001852 270 ISMFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTT-FSTLLSACGSVDNL 345 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~ 345 (1004)
...|.+.|++++|..++.-+.. ++...|--|.-.+.-.|.+.+|..+-... |+... -..++...-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 3445566666666666655432 23444444444455556666665554331 22222 22333333455666
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC--CcchHHH-HHHHHHcCCCHHHHHHHHHHhh
Q 001852 346 KWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER--DSVSWNS-LVASHVQDEKYIDALKIFSNML 422 (1004)
Q Consensus 346 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 422 (1004)
+.-.++|+.+...- .-.-+|.++.--.-.+.+|++++.++... +-...|. |.-+|.+..-++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66666665554321 12223333333334577888888877653 3334443 3446677777777777776665
Q ss_pred hcCCcCCHhhHHHHHHhhcCCC--ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechh
Q 001852 423 QKQRLVNYVTFTSALAACSDPG--FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWN 500 (1004)
Q Consensus 423 ~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 500 (1004)
+. -|| .|+..=|.+|..-. +-..+.+-.+.+.+.+-..-++.--.+-+-+.-...-+.|.+++-.+.+.-+..--
T Consensus 213 ~q--~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 213 RQ--FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred Hh--CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 43 233 34444445543311 11222222233332221111111111111112223445566655443322222333
Q ss_pred hhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHc
Q 001852 501 ALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKC 580 (1004)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 580 (1004)
.|+--|.++++.++|..+.+++.- ..|-+.....+..+... .-....
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG-------------------------------Qe~gSr 336 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG-------------------------------QETGSR 336 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh-------------------------------hhcCcH
Confidence 345557888899999888877532 33433333333322111 111111
Q ss_pred CChhhHHHHHhcCCCC----CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH
Q 001852 581 GDLNSSNYIFEGLAEK----NSV-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 581 g~~~~A~~~f~~~~~~----~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
..+.-|+..|+-.-.. |++ --.+|.+.+.-..++++.+..++....
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s----------------------------- 387 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES----------------------------- 387 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 2233344444332211 111 122333333333334444443333332
Q ss_pred HHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhccCC
Q 001852 656 HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILI-SVFARHGYFQKAIETFDEMLKYVKP 731 (1004)
Q Consensus 656 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~p 731 (1004)
.-...|.+.+ .+.++++..|...+|.++|-++.. +|-.+|.+|+ .+|.++|+.+-|.+++-++.. +.
T Consensus 388 ------YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~ 458 (557)
T KOG3785|consen 388 ------YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PS 458 (557)
T ss_pred ------HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--ch
Confidence 2222233333 245566666666666666665553 3455555543 455666777777666655431 22
Q ss_pred CHhHHHH-HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchH
Q 001852 732 DHVTFVS-LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHC 772 (1004)
Q Consensus 732 d~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 772 (1004)
+..+..- +..-|-+.+.+=-|-+.|+.+. ...|+++.|
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 3333333 3356666666666666666554 345666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=94.54 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=159.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhc
Q 001852 602 NAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKC 681 (1004)
Q Consensus 602 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 681 (1004)
+.|...|.+.|-+.+|.+.|+.-+.. .|-..||.. |...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll-----------------------------------LskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL-----------------------------------LSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH-----------------------------------HHHHHHHh
Confidence 45777888888888888888877664 333334433 44455555
Q ss_pred CChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 001852 682 GEIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYN 757 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~ 757 (1004)
.+.+.|+.+|.+..+ | |+.-...+...+-..++.++|+++++...+. .| |......+...|.-.|+.|-|+.+++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHH
Confidence 555555555555443 2 2333344556666677888888888888775 44 45556666677777888888888888
Q ss_pred HhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 758 TMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM---PVTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 758 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m---~~~p~--~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
++.+- |+ .+++-|..+.-++.-++++|-++.-|++. ...|+ +.+|..|......-||+..|.+.++-++..+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 87763 44 23455666655556678888887777665 23355 45999999888889999999999999999999
Q ss_pred CCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 833 SDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 833 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
++...++.|+-+-+..|+.++|..+....++
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999999999999999999999998887665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00077 Score=78.14 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=96.0
Q ss_pred HHhhHHhcCChhhHhhhcCCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHh-HHHHHHHHHhccCCH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVD-RPRLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHV-TFVSLLSACNHGGLV 749 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~-t~~~ll~a~~~~g~~ 749 (1004)
+...+...|.++.|...+..... -|..+-.+=+.. ...|+++++++.|++.+.- -..|.+ ....++.+-..++.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 34456667788877777666542 122221111122 4568999999999999875 223433 333444555667777
Q ss_pred HHHHHHHHHhHhhcCCCCCCchHHHHHH--HH-HhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 750 DKGLQYYNTMTTEFGVPAGIEHCVCIID--LL-GRSGRLAEAETFINKMP----VTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 750 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~--~l-~r~g~~~eA~~~i~~m~----~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
+.|...+-..... -+|+....-++.- ++ ..+-...-+++-+.+.+ +.-++.....+ .+...|+-...++
T Consensus 1092 ~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~ 1167 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKK 1167 (1238)
T ss_pred hHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHH
Confidence 7787766655542 2344433333322 22 12222222223333332 11112222222 2456788999999
Q ss_pred HHHHHHhcCCCCCCCeehhhhHhhh
Q 001852 823 AAEHLFELDPSDDSSYVLYSNVCAA 847 (1004)
Q Consensus 823 ~~~~~~~l~p~~~~~~~~l~~~y~~ 847 (1004)
..++.+-..|.|+..+.+|++=|++
T Consensus 1168 ~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1168 QIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999975554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-05 Score=86.69 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhcCCCC-hhhhhHHHHHhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHH
Q 001852 247 GYLFLGHVIKFGFHYT-VPVANSLISMFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRH 322 (1004)
Q Consensus 247 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 322 (1004)
+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .|..++......|++..+++.|+.+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3344444444444444 35678888888888888889999987654 3677888999999999999999988322211
Q ss_pred cCCCCC-hhhHHH--HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHH
Q 001852 323 VGQEIN-STTFST--LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWN 399 (1004)
Q Consensus 323 ~g~~p~-~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 399 (1004)
..|- .-.++. +--.+-..++...+..-++...+.. +.|...|..|..+|..+|+...|.++|++...-++.+|-
T Consensus 555 --ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 555 --KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred --hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 1111 111222 2222445566666666666665554 346778888999999999999999999887765444433
Q ss_pred HH---HHHHHcCCCHHHHHHHHHHhhh
Q 001852 400 SL---VASHVQDEKYIDALKIFSNMLQ 423 (1004)
Q Consensus 400 ~l---i~~~~~~g~~~~A~~l~~~m~~ 423 (1004)
.. ...-+..|.+.+|+..+.....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 2234567888888888777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-06 Score=81.44 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 679 (1004)
+...|.-+|.+.|+...|.+-+++.++. .|+ +..++..+...|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHH
Confidence 3455677888888888888888887763 332 4456677788888
Q ss_pred hcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 680 KCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 680 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+.|..+.|.+.|++... .+-...|....-+|..|++++|...|++.... ..--..||..+...-.++|+.+.|.+
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 88999888888887653 45567888888999999999999999999987 33355688888888889999999999
Q ss_pred HHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 755 YYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+|++..+ +.|+ ......|.+..-..|++-+|..+++.. ...+......-.+..-...||.+.+.+.-.++-.+.
T Consensus 161 ~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 161 YLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999875 3443 466778889999999999999999887 344666655455555677899999999999999999
Q ss_pred CCCCCC
Q 001852 832 PSDDSS 837 (1004)
Q Consensus 832 p~~~~~ 837 (1004)
|.....
T Consensus 238 P~s~e~ 243 (250)
T COG3063 238 PYSEEY 243 (250)
T ss_pred CCcHHH
Confidence 976553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=88.35 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=132.4
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHhhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAE--KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAAKL 646 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~ 646 (1004)
.+.+..+|.+.|.+.+|.+.|++..+ +-+.+|--|-..|.+-.+++.|+.+|.+-.+ ..|-.+|+..-+ ......
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHH
Confidence 36788999999999999999997754 4677888899999999999999999999887 477777765433 355566
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
+..+++.+++..+.+... .++....++...|--.|+.|-|...+.++.. .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777766532 2333333444444444555555555544332 334445555445545555555555555
Q ss_pred HHhhc-cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 724 EMLKY-VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 724 ~m~~~-~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+.+.. -.|+. -.|..+.......|+..-|.+.|+-... ..+...+.|+.+.-+-.|.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 55544 33322 2344444444555555555555554432 11222344555544445555555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00062 Score=76.88 Aligned_cols=568 Identities=14% Similarity=0.105 Sum_probs=278.5
Q ss_pred CCchhHHHHHHH--HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh---------c
Q 001852 190 VRNVVSWTSLMV--AYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF---------G 258 (1004)
Q Consensus 190 ~~~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g 258 (1004)
.-|.+|-.+|+. -|+-.|+.+.|.+-.+.... ...|..+.+.|.+.++++-|+--++.|... -
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666664 46677888888887776654 356778888888888888777766655321 1
Q ss_pred CCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh
Q 001852 259 FHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA 338 (1004)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 338 (1004)
-.++ ..-....-.-...|.+++|+.++.+-+. |..|=.-|...|.+++|+++-+.=.+-.++ .||..-..-
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~ 867 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKY 867 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHH
Confidence 1121 2222222233455667777777766543 333444556667777777766543332222 233333333
Q ss_pred hcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIF 418 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 418 (1004)
+-..++.+.|.+.++.. |.. --.+.. ++. .++....+..+.+.++....| -..-+-..|+.+.|+.+|
T Consensus 868 Lear~Di~~AleyyEK~---~~h-afev~r-mL~-----e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKA---GVH-AFEVFR-MLK-----EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFY 935 (1416)
T ss_pred HHhhccHHHHHHHHHhc---CCh-HHHHHH-HHH-----hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHH
Confidence 33445555555555432 111 001111 111 122333334444444433222 223334567777777777
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeec
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVT 498 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 498 (1004)
..... |-++.+..|-.|+.++|.++-.+. -|....-.|..+|-..|++.+|..+|.+.. +
T Consensus 936 ~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----a 995 (1416)
T KOG3617|consen 936 SSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----A 995 (1416)
T ss_pred HHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----H
Confidence 76543 455666666677777777665542 244455556777777777777777776543 2
Q ss_pred hhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHH
Q 001852 499 WNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYA 578 (1004)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~ 578 (1004)
+..-|..|-.++. ++-+.-+.-|-. | .+...+-..+ .+.|.. ..--+..|-
T Consensus 996 fsnAIRlcKEnd~-~d~L~nlal~s~----~----------------~d~v~aArYy---Ee~g~~-----~~~AVmLYH 1046 (1416)
T KOG3617|consen 996 FSNAIRLCKENDM-KDRLANLALMSG----G----------------SDLVSAARYY---EELGGY-----AHKAVMLYH 1046 (1416)
T ss_pred HHHHHHHHHhcCH-HHHHHHHHhhcC----c----------------hhHHHHHHHH---HHcchh-----hhHHHHHHH
Confidence 3333333322222 111111111100 0 1111111111 111110 112345677
Q ss_pred HcCChhhHHHHHhcCCC--------------CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh
Q 001852 579 KCGDLNSSNYIFEGLAE--------------KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA 644 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 644 (1004)
|.|.+.+|+++--.-.+ .|+...+.-..-+..+.++++|..++-..++ |.-.+..|.
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK 1117 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 88888877765322221 2555556666667778888888887766543 334444444
Q ss_pred hhhhHHHHHHHHHHHH--HhCCCC---ChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHH--
Q 001852 645 KLAVLEEGHQLHGLAT--KLGFDL---DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQK-- 717 (1004)
Q Consensus 645 ~~~~~~~a~~~~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-- 717 (1004)
..+. .-..++-+.|. +.+..+ ...+...+.+.+.++|.+..|-+-|.+...+= .-+.++.+.|+.++
T Consensus 1118 ~~nv-~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl-----~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1118 NRNV-RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL-----SAMRALLKSGDTQKIR 1191 (1416)
T ss_pred cCCC-chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH-----HHHHHHHhcCCcceEE
Confidence 3321 11222222221 112111 12344556677777787777777776654320 12234445555443
Q ss_pred --------------HHHHHHHHhhc----cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHH
Q 001852 718 --------------AIETFDEMLKY----VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLL 779 (1004)
Q Consensus 718 --------------A~~l~~~m~~~----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 779 (1004)
|..+++..-=+ +-.|.+||..-..++-+.+.+=++.... .+++|...-.
T Consensus 1192 FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi-----------Eiee~q~ydK-- 1258 (1416)
T KOG3617|consen 1192 FFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI-----------EIEELQTYDK-- 1258 (1416)
T ss_pred EEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh-----------hHHHHhhhhH--
Confidence 22222211100 1123445544444444433322221111 1122221111
Q ss_pred HhcCChHHHHHHHHhCCCCCCHH-H----------HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCC------Ceehh
Q 001852 780 GRSGRLAEAETFINKMPVTPNDL-V----------WRSLLASSKIH-GNVELAKKAAEHLFELDPSDDS------SYVLY 841 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m~~~p~~~-~----------~~~ll~~~~~~-g~~e~a~~~~~~~~~l~p~~~~------~~~~l 841 (1004)
..|-++||.+.+.+...+.+.. . +...|...+.. .|...+++-.+.+++ +|+.+. .|-+|
T Consensus 1259 -a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~l 1336 (1416)
T KOG3617|consen 1259 -AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALL 1336 (1416)
T ss_pred -HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHH
Confidence 1355666666666654332221 2 22223333332 244455555555544 454442 46677
Q ss_pred hhHhhhcCCchHHHHHHHHHhh
Q 001852 842 SNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 842 ~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..-|....+|..|-+..+.|+.
T Consensus 1337 ie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1337 IEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred HHHHHhhhhccHHHHHHHHHhh
Confidence 8889999999999998888874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00013 Score=80.72 Aligned_cols=444 Identities=14% Similarity=0.127 Sum_probs=243.2
Q ss_pred CCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHH
Q 001852 341 SVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKI 417 (1004)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 417 (1004)
..+++..+....+.+++ +.+....+....--.....|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44566666666666665 2222233332222234456788888877766554 3567899888888888899999999
Q ss_pred HHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcC---CCC
Q 001852 418 FSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIM---PKR 494 (1004)
Q Consensus 418 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~ 494 (1004)
|+....- .||. ..++.-|--.-+..|+++.....-... ...
T Consensus 98 y~nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9887653 3433 222222222223333333333222222 123
Q ss_pred CeechhhhhHHhhhCCChhHHHHHHHHHHhcC-CCCChhhHHHHHHhhcCCcchhhccc--chhhhh--hhhcccCchhH
Q 001852 495 DTVTWNALIGGHSEKEEPDKALKAYKRMREEG-TPMNYITFANVLGACLNPGDLLIHGM--PIHTHI--VLTGFESHKYV 569 (1004)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~--~i~~~~--~~~g~~~~~~~ 569 (1004)
....|.....++.-.|++..|..+.++..+.. -.|+...+.-...-.-...-..+.+. .....+ .+..+......
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 45678888888888899999998888887754 34555555332222111101111111 111111 11111222233
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC--CHhHHHH-HHHHHHhcCChHHHH-HHHHHhhhcCCCCChhhHHHHHHHHhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK--NSVTWNA-MIAANALHGQGEEVL-KLLVKMRHTGVYFDRFSLSEGLAAAAK 645 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~ 645 (1004)
.-.-.+.+.+.+++++|..++..+..+ |.+-|.- +..++.+-.+.-+++ .+|....+. .+-.......-++....
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCc
Confidence 344456777888888888888877654 3333333 333333333444444 555554432 11111111111122222
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhH----------------HhcCChhhHhhhcCCC--CCCChhHHHH--H
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY----------------GKCGEIGDVLRIAPQP--VDRPRLSWNI--L 705 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----------------~k~g~~~~A~~~~~~~--~~~~~~~~~~--l 705 (1004)
..-.+....++....+.|+++ ++..+...| ...=+-.......+.- ..|....|+. +
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 222333344555566666554 222333333 2111111111111111 1244566765 5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCC
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 784 (1004)
+..|-..|+++.|+.+.+...+. .|..+ -|..-...+.|+|++++|..+++...+ -..||...-+--+..+.|+.+
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccc
Confidence 67778899999999999999985 66554 566667899999999999999999875 344555444344567779999
Q ss_pred hHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 001852 785 LAEAETFINKMPVTP-N--------DLVWRSLL--ASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 785 ~~eA~~~i~~m~~~p-~--------~~~~~~ll--~~~~~~g~~e~a~~~~~~~~ 828 (1004)
.++|.++.....-+- + ..+|--+- .++...|++.+|.+-+-.+.
T Consensus 455 i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999887652111 1 23676553 34677778777765544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=82.26 Aligned_cols=334 Identities=14% Similarity=0.102 Sum_probs=207.7
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhcC-ChHHH--------------HHHHHHhhhcC--
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHG-QGEEV--------------LKLLVKMRHTG-- 628 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g-- 628 (1004)
...-.-.+..|-..++-++|.....+++.. ...--|.|+.-+.++| +..++ +..+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445677788888888898888888765 3333344444333333 11122 11111112222
Q ss_pred -------------CCCChhhHHHHHHHHh--hhhhHHHHHHHHHHHHH-hCCCCChhHHhHHHhhHHhcCChhhHhhhcC
Q 001852 629 -------------VYFDRFSLSEGLAAAA--KLAVLEEGHQLHGLATK-LGFDLDPFVTNAAMDMYGKCGEIGDVLRIAP 692 (1004)
Q Consensus 629 -------------~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 692 (1004)
+.|...+...-+.+++ ..++...+.+.+..+.+ .-++.++....++.+.|...|+.++|.-.|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 2233333344444443 34555555555555543 4677788999999999999999999999999
Q ss_pred CCCCCChhHHHHH---HHHHHh----------------------------------cCCHHHHHHHHHHHhhccCC-CHh
Q 001852 693 QPVDRPRLSWNIL---ISVFAR----------------------------------HGYFQKAIETFDEMLKYVKP-DHV 734 (1004)
Q Consensus 693 ~~~~~~~~~~~~l---i~~~~~----------------------------------~g~~~~A~~l~~~m~~~~~p-d~~ 734 (1004)
+...-|+.+..+| ...+++ ..+++.|+.+-++.++ +.| +..
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~ 335 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRNHE 335 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcccch
Confidence 8765444332222 111122 3345556666666665 355 455
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH--
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLA-- 809 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~-- 809 (1004)
.|..-..++...|++++|.-.|+..+ .+.| +.+.|-.++..|-..|++.||.-+.+.. ..-|. +.+. +|++
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L-tL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL-TLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh-hhhcce
Confidence 67666778899999999999999986 4566 5699999999999999999998765442 22222 2222 3332
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEE-----
Q 001852 810 SSKIH-GNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNS----- 883 (1004)
Q Consensus 810 ~~~~~-g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~----- 883 (1004)
.|.-. .--|+|+..+++.+.++|.-.++-+.++.++...|+++++..+.+. .++..|.++.-.+-|++.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~----~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK----HLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH----HHhhccccHHHHHHHHHHHHhhhH
Confidence 23222 3458899999999999999999889999999999999998876432 2223344443222222100
Q ss_pred ------EecCCCCCCChHHHHHHHHHHHHHHH
Q 001852 884 ------FGMGDHSHPDTEHIYAKLEELKKMIK 909 (1004)
Q Consensus 884 ------f~~~d~~h~~~~~i~~~l~~l~~~~~ 909 (1004)
|...=+..|+.+.-.+-|+.|+++++
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 11112345788777777888877776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00014 Score=82.80 Aligned_cols=424 Identities=15% Similarity=0.147 Sum_probs=228.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhhcCCcCCHhhH-HHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcc---
Q 001852 403 ASHVQDEKYIDALKIFSNMLQKQRLVNYVTF-TSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKS--- 478 (1004)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--- 478 (1004)
..+...|++++|++.+.+-.. ..+|..++ ..--..+.+.|+.++|..++..+++.+. .|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 345678999999998876432 34555444 3344456677888888888888887763 3445555555555222
Q ss_pred --CChHHHHHHHhcCCC--CCeechhhhhHHhhhCCCh-hHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccc
Q 001852 479 --GMMSEAKQVFRIMPK--RDTVTWNALIGGHSEKEEP-DKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMP 553 (1004)
Q Consensus 479 --g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 553 (1004)
.+.+...++++++.. |.......+.-.+.....+ ..+...+..+...|+++--..+..+. ... ...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly---~d~-~K~----- 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY---KDP-EKA----- 159 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---cCh-hHH-----
Confidence 245555666666543 2222222222222222222 23444555566666544333222222 111 111
Q ss_pred hhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHH-h-cCCCCCHhHH--HHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 554 IHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIF-E-GLAEKNSVTW--NAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 554 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f-~-~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
.+.-.++..|............- + .-..|....| .-+...|-..|++++|++..++.++.
T Consensus 160 --------------~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 160 --------------AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred --------------HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 11112222222111000000000 0 0111233345 44466677888999999998888775
Q ss_pred CCChh-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC------h---
Q 001852 630 YFDRF-SLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP------R--- 699 (1004)
Q Consensus 630 ~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~--- 699 (1004)
.|+.+ -|..-...+-+.|++.+|.+..+...+... .|.++-+-.+..+.++|++++|.+++.....++ .
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 56544 344445577788999999888888877654 378888888899999999999998877666543 1
Q ss_pred -hHHH--HHHHHHHhcCCHHHHHHHHHHHhhc---cCCCH-------------hHHHHHHHHHhccCC-------HHHHH
Q 001852 700 -LSWN--ILISVFARHGYFQKAIETFDEMLKY---VKPDH-------------VTFVSLLSACNHGGL-------VDKGL 753 (1004)
Q Consensus 700 -~~~~--~li~~~~~~g~~~~A~~l~~~m~~~---~~pd~-------------~t~~~ll~a~~~~g~-------~~~a~ 753 (1004)
..|- .-..+|.+.|++..|++.|....+. +.-|. .+|..++.-.-+... ...|.
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai 382 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAI 382 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2453 3467889999999999888777654 33332 234444432221111 12233
Q ss_pred HHHHHhHhhcCCCCCCch-----------HHHHHHHH---HhcCChHHHHHHHH--------------hC-CCCCCHHHH
Q 001852 754 QYYNTMTTEFGVPAGIEH-----------CVCIIDLL---GRSGRLAEAETFIN--------------KM-PVTPNDLVW 804 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p~~~~-----------y~~lv~~l---~r~g~~~eA~~~i~--------------~m-~~~p~~~~~ 804 (1004)
+++-.+............ ..-+-.-. .+...-+++..--. .. |..+|....
T Consensus 383 ~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~ 462 (517)
T PF12569_consen 383 RIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL 462 (517)
T ss_pred HHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc
Confidence 444333322111100000 00000000 01111111211110 00 222222222
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHH
Q 001852 805 R-SLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858 (1004)
Q Consensus 805 ~-~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 858 (1004)
+ .|+ ....=+|.|.+.++-+.+..|++...|.+--.+|...|++--|.+..
T Consensus 463 GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 463 GEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred HHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 1 122 22345788999999999999999999999999999999998887643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-06 Score=85.56 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chH
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHC 772 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y 772 (1004)
....+..++..+...|++++|+..|++.... .|+. .++..+..++...|++++|...++.+.+.+.-.|.. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445555566666666666666666666553 3321 244555566666666666666666665543333322 122
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHhC-CCCCCHH-HH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 001852 773 VCIIDLLGRS--------GRLAEAETFINKM-PVTPNDL-VW-----------------RSLLASSKIHGNVELAKKAAE 825 (1004)
Q Consensus 773 ~~lv~~l~r~--------g~~~eA~~~i~~m-~~~p~~~-~~-----------------~~ll~~~~~~g~~e~a~~~~~ 825 (1004)
..+..++... |+.++|.+.++++ ...|+.. .+ ..+...+...|+.+.|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2233333332 5566666666554 2233321 22 234455677899999999999
Q ss_pred HHHhcCCCCC---CCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 826 HLFELDPSDD---SSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 826 ~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
++++..|+++ ..+..++.+|...|++++|....+.+..+
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987754 58889999999999999999988877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=82.07 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=97.8
Q ss_pred HHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 001852 719 IETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-P 796 (1004)
Q Consensus 719 ~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~ 796 (1004)
..+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++. .
T Consensus 13 ~~~~~~al~-~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS-VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH-cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 355666666 46664 55677788889999999999998864 344 5577888888999999999999999887 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhh
Q 001852 797 VTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 797 ~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
..|+ +..|..+..++...|+.+.|+..+++++++.|+++.++..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5554 5688888888889999999999999999999999999888777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=85.55 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=140.3
Q ss_pred cCChhhHHHHHh--cCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 580 CGDLNSSNYIFE--GLAEK-NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 580 ~g~~~~A~~~f~--~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
.|.+..+..-.+ ..... +.....-+..+|...|+++.++. +.... -.|....+..+...+.....-+....-+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 466666664443 11111 23344455667777777665443 33222 2555555544444443323333333222
Q ss_pred HHHHHhCCC-CChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH
Q 001852 657 GLATKLGFD-LDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT 735 (1004)
Q Consensus 657 ~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t 735 (1004)
......... .+..+......+|...|++++|++++.+. .+....-..+..|.+.++.+.|.+.++.|.+ ...|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~eD~~- 165 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDEDSI- 165 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSCCHH-
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcHH-
Confidence 222222222 23344444456778889999999998876 4555556677888899999999999999886 455543
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 001852 736 FVSLLSACNH----GGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~ 809 (1004)
...+..++.. ...+.+|..+|+.+.+.+ .+++...+.+.-+....|+++||++++++. ...|+ +.++-+++-
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 3334444432 236888888888887643 455666777777777788888888777664 44444 335556665
Q ss_pred HHHhcCCH-HHHHHHHHHHHhcCCCC
Q 001852 810 SSKIHGNV-ELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 810 ~~~~~g~~-e~a~~~~~~~~~l~p~~ 834 (1004)
.+...|+. +.+.+...++....|++
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 55555665 66777777777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-06 Score=88.06 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=105.4
Q ss_pred hhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGH 653 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 653 (1004)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa------------- 170 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA------------- 170 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH-------------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH-------------
Confidence 34566678888888887765 45555566778888888899898888888763 233 2222222
Q ss_pred HHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 001852 654 QLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVK 730 (1004)
Q Consensus 654 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 730 (1004)
.+++.++.-.+.+.+|..+|+++.+ +++...|.+..++...|++++|.+++.+..+..+
T Consensus 171 ------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 171 ------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp ------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred ------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 3344444444567777777777654 3556778888888899999999999888776433
Q ss_pred CCHhHHHHHHHHHhccCCH-HHHHHHHHHhHhhcC
Q 001852 731 PDHVTFVSLLSACNHGGLV-DKGLQYYNTMTTEFG 764 (1004)
Q Consensus 731 pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~ 764 (1004)
-|..|...++..+.+.|+. +.+.+++.++...++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3666788888888888887 667788888876533
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-05 Score=84.90 Aligned_cols=288 Identities=11% Similarity=0.025 Sum_probs=178.2
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCC---CC--H-hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh-hHHHHHHH
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAE---KN--S-VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF-SLSEGLAA 642 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~--~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a 642 (1004)
+..+...|...|+.+++.+.+....+ ++ . .........+...|++++|.+++++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34455566667777776555554322 12 1 12223344567889999999999998875 45443 2221 112
Q ss_pred Hhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCH
Q 001852 643 AAK----LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYF 715 (1004)
Q Consensus 643 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 715 (1004)
+.. .+..+.+.+.... .....+........+...+...|++++|.+.+++... .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 3444444444433 1111122334445666788999999999999998764 3466788899999999999
Q ss_pred HHHHHHHHHHhhccC--CCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCc-h--HHHHHHHHHhcCChHHH
Q 001852 716 QKAIETFDEMLKYVK--PDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE-H--CVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 716 ~~A~~l~~~m~~~~~--pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--y~~lv~~l~r~g~~~eA 788 (1004)
++|+..+++.....+ |+. ..|..+...+...|++++|+.++++........+... . ...+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999999988622 332 2355678889999999999999999854211112111 1 11333444455544444
Q ss_pred HHH--H-HhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCCCeehhhhHhhhcCCch
Q 001852 789 ETF--I-NKM-PVTPN---DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS---------DDSSYVLYSNVCAATGRWD 852 (1004)
Q Consensus 789 ~~~--i-~~m-~~~p~---~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~---------~~~~~~~l~~~y~~~g~~~ 852 (1004)
..+ + ... +..|+ .....+...++...|+.+.|....+.+....-. .....++.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 443 2 211 11121 223335566677789999999999888764322 3456678888999999999
Q ss_pred HHHHHHHHH
Q 001852 853 DVENVRRQM 861 (1004)
Q Consensus 853 ~a~~~~~~m 861 (1004)
+|.+.-...
T Consensus 325 ~A~~~L~~a 333 (355)
T cd05804 325 TALELLGPV 333 (355)
T ss_pred HHHHHHHHH
Confidence 998864443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-07 Score=62.48 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=24.6
Q ss_pred CCCCCcchhhhHHHHhhcCCChhhHHHhhccCC
Q 001852 157 GLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP 189 (1004)
Q Consensus 157 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 189 (1004)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-06 Score=92.08 Aligned_cols=222 Identities=17% Similarity=0.116 Sum_probs=146.3
Q ss_pred cccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 562 GFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 562 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
+++|--.+...+.+.+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678889999999999999999976 4688888999999999999988888766 3455555544444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
...+..-+ ++|.++++....+--.+|+-. ..+.+++.++.+.
T Consensus 466 v~~d~s~y-----------------------------------EkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSLY-----------------------------------EKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHHH-----------------------------------HHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 44444444 444444443332211112111 1236788888888
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CC-
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PV- 797 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~- 797 (1004)
|+.-.+. .| ...||..+..+..+.++++.|.+.|..... ..|+ .+.|+.+.-+|-+.|+..+|...+++. ..
T Consensus 508 le~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 508 LERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8887774 44 667888888888888888888888887763 3443 366666666666666666666666554 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
.-+..+|.+..-....-|+.+.|.+++.+++++.-
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 22234666665566666666666666666666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-07 Score=61.90 Aligned_cols=33 Identities=36% Similarity=0.321 Sum_probs=25.6
Q ss_pred ccCCCcchhhHHHHHHHccCChhHHHHHhcccC
Q 001852 55 LVSFSVFYNNTLINMYFKFGCLGYARYVFDKMG 87 (1004)
Q Consensus 55 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 87 (1004)
|+.||.++||+||++|||.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888877774
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-06 Score=90.02 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=157.1
Q ss_pred HHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 652 (1004)
-+.+.|++.+|.-.|+...++ +..+|--|....+.+++-..|+..+++.++ +.|+...
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~Nle----------------- 354 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLE----------------- 354 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHH-----------------
Confidence 356889999999999977655 567899999999999988888888888776 4554322
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD 732 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd 732 (1004)
..-+|...|...|.-.+|++++++-+.. +|-
T Consensus 355 ------------------------------------------------aLmaLAVSytNeg~q~~Al~~L~~Wi~~-~p~ 385 (579)
T KOG1125|consen 355 ------------------------------------------------ALMALAVSYTNEGLQNQALKMLDKWIRN-KPK 385 (579)
T ss_pred ------------------------------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHHh-Ccc
Confidence 2233344444445555555555554332 111
Q ss_pred Hh---------HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 001852 733 HV---------TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL 802 (1004)
Q Consensus 733 ~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~ 802 (1004)
.. .+.. -....+......-.++|-.+....+..++++.+.+|.-+|--.|.++.|.+.++.+ ..+|+..
T Consensus 386 y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 386 YVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred chhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 00 0000 01122223345566777777776777788899999999999999999999999987 6788754
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 803 -VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 803 -~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
+|+-|+.....-.+.++|+.+|.++++|.|.-.-....|+-.|.-.|-++||.+-
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 8999999998889999999999999999999999999999999999999999883
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.2e-05 Score=85.05 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=184.1
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC--CHhHH-HHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh----h-
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK--NSVTW-NAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA----K- 645 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~- 645 (1004)
...+...|++++|++.+++-... |..+| ......|.+.|+.++|...|+.+... .||...|...+..|. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 34567889999999999876654 55554 45567889999999999999999985 688888887777665 1
Q ss_pred -hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChh-hHhhhcCCCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 001852 646 -LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG-DVLRIAPQPVDRPRL-SWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 -~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
....+.-.++++.+...-...+..-. +.=.+..-..+. .+...+..+..+++. .++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 22466667777766554322222111 111111111121 223333444455553 4555666666555555555666
Q ss_pred HHHhhc---------------cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCC
Q 001852 723 DEMLKY---------------VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 723 ~~m~~~---------------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~ 784 (1004)
...... -+|.. .++..+...|.+.|++++|+++.++.++ ..|+ ++-|..-+.+|-++|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 665432 12333 2445667788899999999999998875 4676 5888899999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCC----------eehhhhHhhhcCCch
Q 001852 785 LAEAETFINKM-PVTPNDLVWRSLLAS-SKIHGNVELAKKAAEHLFELDPSDDSS----------YVLYSNVCAATGRWD 852 (1004)
Q Consensus 785 ~~eA~~~i~~m-~~~p~~~~~~~ll~~-~~~~g~~e~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~ 852 (1004)
+++|.+.++.. .+.+...-.++-..- +...|+++.|+..+.....-+- ++.. ..--++.|...|+|.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999887 566666555554444 4566999999999887755443 2221 123456889999999
Q ss_pred HHHHHHHHH
Q 001852 853 DVENVRRQM 861 (1004)
Q Consensus 853 ~a~~~~~~m 861 (1004)
.|.+-....
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 988755444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00032 Score=77.75 Aligned_cols=383 Identities=14% Similarity=0.123 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHH
Q 001852 443 PGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAY 519 (1004)
Q Consensus 443 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 519 (1004)
.+++..+....+.+++ +++-...+.....-.+...|+-++|......-.. ++.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4555566666666555 3333334444333445567888888888776553 35678988888888889999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCC---CC
Q 001852 520 KRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLA---EK 596 (1004)
Q Consensus 520 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~ 596 (1004)
+.... +.||.... +.-|.-.-++.|+++.....-.... ..
T Consensus 99 ~nAl~--~~~dN~qi-----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 99 RNALK--IEKDNLQI-----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHh--cCCCcHHH-----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 98877 44543322 1111111222333333322222221 22
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCChhhHHHHHH------HHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTG-VYFDRFSLSEGLA------AAAKLAVLEEGHQLHGLATKLGFDLDPF 669 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 669 (1004)
.-..|.....++.-.|++..|..+.++..+.. -.|+...+.-... ...+.|.++.+.+.+...... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45689999999999999999999999887654 2466555543332 234566666666655443322 112223
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCCCC--ChhHHHH-HHHHHHhcCCHHHHH-HHHHHHhhccCCC-------------
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDR--PRLSWNI-LISVFARHGYFQKAI-ETFDEMLKYVKPD------------- 732 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~~~pd------------- 732 (1004)
.--.-.+.+.+.|++++|..++.....+ |.+-|.- +..++.+--+.-+++ .+|....+. .|-
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLN 299 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhC
Confidence 3345577889999999999999988764 4444443 344443333333444 556555443 111
Q ss_pred --------------------HhHHHHHHHHHhccCCHH----HHHHHHHHhHhhc-------C--CCCCC--chHHHHHH
Q 001852 733 --------------------HVTFVSLLSACNHGGLVD----KGLQYYNTMTTEF-------G--VPAGI--EHCVCIID 777 (1004)
Q Consensus 733 --------------------~~t~~~ll~a~~~~g~~~----~a~~~~~~m~~~~-------~--~~p~~--~~y~~lv~ 777 (1004)
+.+|..+.+-+-.-..++ -+..+...+...- + -+|.. .++-+++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 111222222221111111 0111111111100 0 02222 34555666
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 778 LLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
-+-+.|+++.|++.|+.. .-.|... .|.+-...+.-.|+++.|-..++++.++|-.|..+.-.-++-...+.+.++|.
T Consensus 380 h~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 666777777777777665 3334433 33333333444567777777777777777666555555556666666777777
Q ss_pred HHHHHHhhCC
Q 001852 856 NVRRQMGWNK 865 (1004)
Q Consensus 856 ~~~~~m~~~~ 865 (1004)
++-.+.-..|
T Consensus 460 ~~~skFTr~~ 469 (700)
T KOG1156|consen 460 EVLSKFTREG 469 (700)
T ss_pred HHHHHhhhcc
Confidence 7666655444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00021 Score=79.85 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=171.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCChhhHHHH-HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh--
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV-YFDRFSLSEG-LAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTN-- 672 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-- 672 (1004)
....|..+...+...|+.+++.+.+.+..+... .++......+ ...+...|+.+++..++..+.+... .+...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHh
Confidence 355677777888888888888777776654321 2232222222 1234567899999999998887643 3333433
Q ss_pred -HHHhhHHhcCChhhHhhhcCCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCC
Q 001852 673 -AAMDMYGKCGEIGDVLRIAPQPVDRP---RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 673 -~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~ 748 (1004)
.+.......|..+.+.+.++.....+ ...+..+...+...|++++|++.+++..+..+.+...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 22222334566666777766533322 23445566788999999999999999999533356677888899999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCC--chHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHHH----HHHHHHHhcCCHHH
Q 001852 749 VDKGLQYYNTMTTEFGVPAGI--EHCVCIIDLLGRSGRLAEAETFINKM-PVTP--NDLVWR----SLLASSKIHGNVEL 819 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p--~~~~~~----~ll~~~~~~g~~e~ 819 (1004)
+++|..++++........|.. ..|..+..++...|++++|.+.+++. ...| ...... .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999987643333333 23557889999999999999999986 2233 222211 44455566676555
Q ss_pred HHHH---HHHHHhcCCCCCCCe--ehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 820 AKKA---AEHLFELDPSDDSSY--VLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 820 a~~~---~~~~~~l~p~~~~~~--~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+.+. ........|...... ...+..+...|++++|..+.+.++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554 222222112211112 2556677888999999998887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-05 Score=83.93 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 679 (1004)
+++.+-..+...++.++|+.++.++++ +.|+..|. |+-...++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHH
Confidence 444555566777888899998888876 45655432 111112222
Q ss_pred hcC-ChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCH--HHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHH
Q 001852 680 KCG-EIGDVLRIAPQPV---DRPRLSWNILISVFARHGYF--QKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 680 k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a 752 (1004)
+.| ++++++..++++. .++..+|+-....+.+.|+. ++++++++++++. .| |..+|.....++.+.|+++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHH
Confidence 223 3445555554443 23445676555555555543 6678888888874 55 677888888888888888888
Q ss_pred HHHHHHhHhhcCCCCCCchHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc----CCHHH
Q 001852 753 LQYYNTMTTEFGVPAGIEHCVCIIDLLGRS---GRL----AEAETFINKM-PVTPN-DLVWRSLLASSKIH----GNVEL 819 (1004)
Q Consensus 753 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~---g~~----~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~----g~~e~ 819 (1004)
++.++++.+.. +-+...|+....++.+. |.+ +++.+++.++ ...|+ ...|..+.+.+..+ ++...
T Consensus 162 L~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 162 LEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 88888887641 22234444444444333 323 4667777444 56665 45899998888774 34567
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
|.....++++.+|+++-+...|+.+|...
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 88999999999999999999999999863
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=74.56 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=139.8
Q ss_pred HHHHcCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHhhhhhHHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAAKLAVLEE 651 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~~~~~~ 651 (1004)
.+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|...++ .+||-..-..-- ..+.+.|.+++
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHH
Confidence 334455566666666655555555554442 345555555555555555554 355532211111 12345555566
Q ss_pred HHHHHHHHHHhCCCCCh--hHH------------hHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCC
Q 001852 652 GHQLHGLATKLGFDLDP--FVT------------NAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGY 714 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~--~~~------------~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 714 (1004)
|..=|..+++....... .++ ...+..+.-.|+...|++....+.+ .|...+..-..+|...|.
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 65555555543321110 000 1112223344566666666555443 344555555666666666
Q ss_pred HHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC----chHHHH---H------HHHHh
Q 001852 715 FQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI----EHCVCI---I------DLLGR 781 (1004)
Q Consensus 715 ~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~l---v------~~l~r 781 (1004)
...|+.-++..-+.-.-+..++.-+...+-..|+.+.++...+... .+.|+- .+|..+ + .-..+
T Consensus 205 ~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666655554322344455555555566666666665555443 333432 112211 1 11223
Q ss_pred cCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 782 SGRLAEAETFINKM-PVTPND-----LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 782 ~g~~~eA~~~i~~m-~~~p~~-----~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
.++|.++.+--++. ..+|.. .+...+-.+++..|++-+|++...++++.+|+|..++.--+..|.....+++|.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555544444332 344431 123333334455567777777777777777777666666666666666666665
Q ss_pred HHHHHH
Q 001852 856 NVRRQM 861 (1004)
Q Consensus 856 ~~~~~m 861 (1004)
.-+++.
T Consensus 362 ~dye~A 367 (504)
T KOG0624|consen 362 HDYEKA 367 (504)
T ss_pred HHHHHH
Confidence 554444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0011 Score=72.06 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=57.5
Q ss_pred HHhcCChhhHHHHHhcCC---CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCChHHH
Q 001852 374 YSEAGRSEDAKFVFQEMS---ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 374 y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 449 (1004)
.+..|+++.|...|.+.. .+|.+.|..-..+|+..|++++|++--.+-++ +.|+. -.|+-.-.+....|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHH
Confidence 344566666666665543 23566666666667777776666655444433 34543 3455556666666677776
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHH
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMY 475 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y 475 (1004)
..-|..-++.. +.+...++-|.+++
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 66666655442 33555666666666
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-05 Score=79.14 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=111.0
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+-+|.+.|+++......+....+. ..+...++.++++..+++.++.-+.|...|..+...|...|++++|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345666676665544332211110 012235677888888888877544477888899999999999999999
Q ss_pred HHHHhHhhcCCCC-CCchHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 755 YYNTMTTEFGVPA-GIEHCVCIIDLL-GRSGR--LAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 755 ~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
.|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|...+...|+++.|+..+++++
T Consensus 95 a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998865 445 457777788764 67777 48999999887 56665 4578888888889999999999999999
Q ss_pred hcCCCCCCCe
Q 001852 829 ELDPSDDSSY 838 (1004)
Q Consensus 829 ~l~p~~~~~~ 838 (1004)
+++|.++.-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998876644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00096 Score=72.65 Aligned_cols=237 Identities=16% Similarity=0.094 Sum_probs=144.4
Q ss_pred HhhHHHHcCChhhHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHH
Q 001852 573 LITMYAKCGDLNSSNYIFEGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLE 650 (1004)
Q Consensus 573 Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 650 (1004)
|..+..+..+++.|.+-++....- ++.-++....+|...|.+.+....-....+.|-.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-------------------- 289 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-------------------- 289 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH--------------------
Confidence 444444555555555555544322 3344555666777777766666555543332210
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 651 EGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 651 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.+.-+..+- .....+...|.+.++.+.|+..|.+... ++.... .+....++++...+...-
T Consensus 290 -~rad~klIa--------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~- 352 (539)
T KOG0548|consen 290 -LRADYKLIA--------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY- 352 (539)
T ss_pred -HHHHHHHHH--------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh-
Confidence 000001110 0111244577777888888888877442 221111 122334444444443332
Q ss_pred cCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHH
Q 001852 729 VKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWR 805 (1004)
Q Consensus 729 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~ 805 (1004)
+.|+.. -.-.-.+.+.+.|++.+|+..|.+++.. .+-+...|..-.-+|.+.|.+.+|.+=.+.. .+.|+.. .|.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 566442 2333467788899999999999998763 2345678888888899999998888766554 5566644 565
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 806 SLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 806 ~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
-=+.+.+...+++.|..++++.++++|++..+-..+...+.+.
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 5566667778999999999999999999888777777777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=78.57 Aligned_cols=146 Identities=8% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
+..|...|+++....-.+.+. .|. . .+...+..+++...++...+ .-+.+.+.|..++.+|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~---~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA---DPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh---Ccc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 467889999888654443322 221 0 12236677888888887765 2344668899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 786 AEAETFINKM-PVTPN-DLVWRSLLASS-KIHGN--VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 786 ~eA~~~i~~m-~~~p~-~~~~~~ll~~~-~~~g~--~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
++|.+.+++. .+.|+ ..+|..+..+. ...|+ .+.|..+++++++++|+++..+..|+..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987 56665 55788887764 56677 59999999999999999999999999999999999999999998
Q ss_pred HhhC
Q 001852 861 MGWN 864 (1004)
Q Consensus 861 m~~~ 864 (1004)
+.+.
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 8753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=79.67 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=103.6
Q ss_pred hHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh----HHHH
Q 001852 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-R---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHV----TFVS 738 (1004)
Q Consensus 669 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~----t~~~ 738 (1004)
..+..+...|.+.|++++|...|++... |+ . .+|..+..+|...|++++|+..|+++.+. .|+.. ++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCchHHHHHH
Confidence 3444455556666666666666665442 21 1 34555666666777777777777777664 33221 3444
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHhHhhcCCCCCCc---------------hHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 739 LLSACNHG--------GLVDKGLQYYNTMTTEFGVPAGIE---------------HCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 739 ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~---------------~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+..++... |+.++|.+.|+.+.+.+.-.+... +...+.+.+.+.|++++|...+++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444443 566777777777665432222110 1124677888999999999988775
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 796 ----PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 796 ----~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
|..|. ...|..+..++...|+.+.|...++.+....|+
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44443 458899999999999999999998888766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00084 Score=68.49 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=202.2
Q ss_pred HHHHHHccCChHHHHHHHhcCCCCCeechhhhh---HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcch
Q 001852 471 LVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALI---GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDL 547 (1004)
Q Consensus 471 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 547 (1004)
|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-+.+.++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR------------ 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR------------ 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH------------
Confidence 445566678888898888888877887777765 357778888888888887776 456533210
Q ss_pred hhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 001852 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHT 627 (1004)
Q Consensus 548 ~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 627 (1004)
+. -...+.|.|.++.|..-|+.+.+.++.- +.-..++.+ +.+.+++.
T Consensus 110 -----------iQ------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~-- 156 (504)
T KOG0624|consen 110 -----------IQ------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW-- 156 (504)
T ss_pred -----------HH------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH--
Confidence 00 1123467888888888888776542210 000001111 01111111
Q ss_pred CCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCC---CCCChhHHHH
Q 001852 628 GVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQP---VDRPRLSWNI 704 (1004)
Q Consensus 628 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~---~~~~~~~~~~ 704 (1004)
.....+......|+...+......+++-. +.|...+..-.+.|...|++..|+.=+... ...+....--
T Consensus 157 -------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 157 -------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred -------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 11122222333444445555544444432 346666666677777777777776554433 3445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCHhH-HHH---H---------HHHHhccCCHHHHHHHHHHhHhhcCCCCC---
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPDHVT-FVS---L---------LSACNHGGLVDKGLQYYNTMTTEFGVPAG--- 768 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t-~~~---l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--- 768 (1004)
+-..+-..|+.+.++...++.++ +.||+-. |.. | .......+.|.++++..++..+ .+|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK-ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ 304 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK-LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETM 304 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccc
Confidence 66666777888888887777777 5776632 111 1 1123455667777776666544 2343
Q ss_pred --CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH
Q 001852 769 --IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV 844 (1004)
Q Consensus 769 --~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~ 844 (1004)
...+..+-.++...|++.||....++. .+.|| +.++.--..++...-.++.|+.-++++.+++|+|..+-.
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re----- 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE----- 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH-----
Confidence 233444566778899999999988876 67787 558877888888889999999999999999998855322
Q ss_pred hhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 845 CAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 845 y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
-.+.|.++.+.-..+..-|.-|
T Consensus 380 -----Gle~Akrlkkqs~kRDYYKILG 401 (504)
T KOG0624|consen 380 -----GLERAKRLKKQSGKRDYYKILG 401 (504)
T ss_pred -----HHHHHHHHHHHhccchHHHHhh
Confidence 2345666666555444444333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=91.89 Aligned_cols=186 Identities=11% Similarity=0.099 Sum_probs=138.4
Q ss_pred hhhHHHHHH-HHhhhhhHHHH-HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC------CCChhHHHH
Q 001852 633 RFSLSEGLA-AAAKLAVLEEG-HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV------DRPRLSWNI 704 (1004)
Q Consensus 633 ~~t~~~ll~-a~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~------~~~~~~~~~ 704 (1004)
..|...++. +.+..|.-+++ .++|.++ -+...+.|.+..+.+-+-+.. ..++..+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQA---------------RQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHH---------------HHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 345555555 45666665554 4455443 234445555555444333322 134677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhc
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRS 782 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 782 (1004)
|.....+.|..++|+.+++...+ +.|| ...+..+..++.+.+++++|+..+++... ..|+ ..+...+..++...
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 88888999999999999999999 5785 45778888999999999999999998864 4564 47788889999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 783 GRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 783 g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
|+++||.+.+++. .-.|+ ..+|-++..++...|+.+.|..+++++++...+-+..
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999987 24444 6689999999999999999999999999987655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=72.91 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhh
Q 001852 769 IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 769 ~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
.+..-.+...+...|++++|.++++.. ...|. ..-|..|..+|+..|+++.|+.++.+++.++|+||.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445667788899999999999887 45665 4589999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 001852 847 ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIK 909 (1004)
Q Consensus 847 ~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 909 (1004)
..|+.++|.+-.+...... + .||+-.+|..+-+.+...+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999776544311 1 45777777776666655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0064 Score=77.32 Aligned_cols=360 Identities=9% Similarity=-0.071 Sum_probs=191.2
Q ss_pred HHHHhcCChhhHHHHHhcCCCCCcch--HHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 372 AMYSEAGRSEDAKFVFQEMSERDSVS--WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 372 ~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
..|...|++.+|..........+... ...........|+...+...+..+.......+..........+...++.+.+
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34555666666666555554432111 1111223445667776666666553221111111112222233456777777
Q ss_pred HHHHHHHHHhCC------CCc--hHHHHHHHHHHHccCChHHHHHHHhcCCC----CCe----echhhhhHHhhhCCChh
Q 001852 450 KIIHALVITMGL------HDN--LIVGNALVSMYAKSGMMSEAKQVFRIMPK----RDT----VTWNALIGGHSEKEEPD 513 (1004)
Q Consensus 450 ~~~~~~~~~~g~------~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~ 513 (1004)
..........-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766544310 011 11222233455677888888887766431 121 23344555567788888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 514 KALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 514 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
+|...+.+.....-..... .........+...+...|+++.|...+++.
T Consensus 509 ~A~~~~~~al~~~~~~g~~-------------------------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVY-------------------------------HYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHhhhcch-------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888887776521100000 001122344556677788888887776653
Q ss_pred CCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCC--hhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001852 594 AEK-----------NSVTWNAMIAANALHGQGEEVLKLLVKMRHTG--VYFD--RFSLSEGLAAAAKLAVLEEGHQLHGL 658 (1004)
Q Consensus 594 ~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~ 658 (1004)
... ....+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 210 12234445556666788888888887765421 1121 12222233345567777888777766
Q ss_pred HHHhCCCC-Chh-----HHhHHHhhHHhcCChhhHhhhcCCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 659 ATKLGFDL-DPF-----VTNAAMDMYGKCGEIGDVLRIAPQPVDRPR-------LSWNILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 659 ~~~~g~~~-~~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.....-.. ... ........+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++.
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54321110 000 001122444567888888887655443211 11345666777888888888888887
Q ss_pred hhc-----cCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 726 LKY-----VKPD-HVTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 726 ~~~-----~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
... ..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 754 1111 135556667778888888888888887753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.026 Score=61.77 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhHHhHHHhhHHhcCChhhHhhhcC
Q 001852 614 GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL-DPFVTNAAMDMYGKCGEIGDVLRIAP 692 (1004)
Q Consensus 614 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~ 692 (1004)
.+.....++++...-..--..+|...+....+..-++.|+.+|..+.+.+..+ +++++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44445555555443222223567777777777777888888888887776666 7788888887776 466777777777
Q ss_pred CCCC--CChh-HHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--
Q 001852 693 QPVD--RPRL-SWNILISVFARHGYFQKAIETFDEMLKY-VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFG-- 764 (1004)
Q Consensus 693 ~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 764 (1004)
...+ .|.. --+..+.-+...++-..|..+|++.+.. +.||. ..|..+|.-=+.-|+..-.+++=+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 3333 3345566666667777777777777776 55544 4677777777777777777777777666555
Q ss_pred CCCCCchHHHHHHHHHhcCChH
Q 001852 765 VPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 765 ~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
..|...+-..+++-|+=.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 4544455555666665554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=84.64 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHH
Q 001852 663 GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSA 742 (1004)
Q Consensus 663 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a 742 (1004)
+++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|.++..+-.+ -+||+.-|..+++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 45555566667778888888888888888764 4677777888888888888888777776 37788888888777
Q ss_pred HhccCCHHHHHHHHHHhHhh----c---------------------CCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 743 CNHGGLVDKGLQYYNTMTTE----F---------------------GVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~----~---------------------~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
.-....+++|+++++..... . .+.| ...+|-...-+.-..++++.|.+.+..-
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 77777777777776654322 0 1111 1122222333333444555555444332
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 796 PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 796 ~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
...||.. .|++|-.++.++|+..+|....+++++-+-++...+....-+-.+.|.|++|.+..+.|.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 4555533 5666655555566666666666666555555555555544455555666666665555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-05 Score=73.98 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=115.8
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
|..+ .-+-..|.-.|+-+++..+..+.. ..|....+..+....+.|++.+|+..|++....-+||..+|+.+.-+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaal 144 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAAL 144 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHH
Confidence 3444 555666667777777777776644 245556677888888888999999988888875556888888888888
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHH
Q 001852 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPV-T-PNDLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~-~-p~~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
.+.|+.++|..-|.+..+..+-+ ...++.|.-.|.-.|+++.|..++...-. . .|..+-..|.-+-...|+++.|+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888887643333 34566677777778888888888877632 2 25667777777777888888888
Q ss_pred HHHHHHH
Q 001852 822 KAAEHLF 828 (1004)
Q Consensus 822 ~~~~~~~ 828 (1004)
.+..+-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 8777643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00097 Score=66.71 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=57.1
Q ss_pred HhhHHhcCChhhHhhhcCCCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCC
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDR-----PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~ 748 (1004)
...+-+.|+.+.|.+.+-.|+.+ |+++...|.-.- ..|++.+..+-+.-+++. .| -..||..++-.|++...
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ-NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc-CCCChHHHHHHHHHHhhhHH
Confidence 34567889999999999999853 677776654332 234444444444445553 55 56799999999999988
Q ss_pred HHHHHHHHHH
Q 001852 749 VDKGLQYYNT 758 (1004)
Q Consensus 749 ~~~a~~~~~~ 758 (1004)
++-|-.++..
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 8888776643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=82.70 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=90.7
Q ss_pred hHHHhhHHhcCChhhHhhhcCCCCC-------CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCC--HhH
Q 001852 672 NAAMDMYGKCGEIGDVLRIAPQPVD-------RP----RLSWNILISVFARHGYFQKAIETFDEMLKY---VKPD--HVT 735 (1004)
Q Consensus 672 ~~li~~y~k~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~pd--~~t 735 (1004)
..+...+...|++++|...+++... ++ ...+..+...+...|++++|...+++.... ..|. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3344455555666655555443221 00 112333444455556666666666665543 1121 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchH-----HHHHHHHHhcCChHHHHHHHHhCCC--CCCH----HHH
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHC-----VCIIDLLGRSGRLAEAETFINKMPV--TPND----LVW 804 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~~eA~~~i~~m~~--~p~~----~~~ 804 (1004)
+..+..+....|+.++|...++.+............+ ......+...|+.++|.+++..... .... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334445556667777766666654321111100001 0011333446666777766655411 1111 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFELDPS------DDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
..+..++...|+.+.|...++++++.... ....+..++..|...|+.++|......
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555567777777777776664211 122455666667777777776664433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=70.79 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=102.0
Q ss_pred CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 001852 730 KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRS 806 (1004)
Q Consensus 730 ~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ 806 (1004)
.| |... ..+-.++-..|+-+++..+.......+ +-+.+.....+-...+.|++.+|...+.+. +-.||...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45 4545 667778888888888888777654322 222233444778888999999999999887 45667779998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+..+|-..|+++.|...+.+++++.|.++.++..|+-.|.-.|+.++|..+...-..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999999999999999887555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.3e-05 Score=70.94 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=87.7
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCc
Q 001852 691 APQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE 770 (1004)
Q Consensus 691 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 770 (1004)
|++....++..+..+...+.+.|++++|+..|++....-+.+...+..+..+|...|++++|...|++..+ -.+.+..
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~ 93 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPE 93 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcH
Confidence 33333444545666778888999999999999998884333777888899999999999999999999875 2233567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHH
Q 001852 771 HCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLL 808 (1004)
Q Consensus 771 ~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll 808 (1004)
.+..++.++.+.|++++|.+.++.. ...|+.. .|....
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7888888999999999999988886 5667654 444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00019 Score=84.95 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=141.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHH-HHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH--hCCCCChhHHhH
Q 001852 597 NSVTWNAMIAANALHGQGEEVL-KLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK--LGFDLDPFVTNA 673 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ 673 (1004)
++...+.+=.+....|..++|- ++..+..+ ++. ..+.+..+.+-+-.+.. .....++..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 3344444555667778888774 44554432 233 23333333333222221 244567888899
Q ss_pred HHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLV 749 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~ 749 (1004)
|.+.....|..++|..+++...+ || ...+..++..+.+.+++++|+..+++.+.. .||. .....+..++.+.|.+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998874 54 457888999999999999999999999994 7754 5566677888999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 001852 750 DKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLA 809 (1004)
Q Consensus 750 ~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~ 809 (1004)
++|..+|++.... .|+ ...+..+..+|-..|+.++|...+++. -..|...-++.++.
T Consensus 171 ~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 171 EQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 9999999999862 343 577888999999999999999999987 34555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=76.50 Aligned_cols=169 Identities=9% Similarity=0.108 Sum_probs=127.8
Q ss_pred hHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCH--H
Q 001852 677 MYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHG-YFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLV--D 750 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~--~ 750 (1004)
.+.+.+..++|+...+++.. .+..+|+.....+...| +.++++..++++.+..+.+..+|......+.+.|.. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 34455677788888877664 34467887777777777 689999999999985333666777666666667763 7
Q ss_pred HHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHH
Q 001852 751 KGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIH---GN----VELA 820 (1004)
Q Consensus 751 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~---g~----~e~a 820 (1004)
+++.+++.+.+ +.|. ...|.....++.+.|++++|+++++++ ...| +..+|.......... |. .+.+
T Consensus 126 ~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 78889988874 4554 467778888899999999999999998 4444 456888877766554 22 3567
Q ss_pred HHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 821 KKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
....+++++++|+|.+++..++.+|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 8888899999999999999999999773
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0005 Score=82.03 Aligned_cols=142 Identities=10% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLL 779 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 779 (1004)
++..+..+|.+.|+.++|...++++++. .| |..+.+.+...++.. +.++|++++.+.... |
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA-DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------F 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------H
Confidence 4445555566666666666666666553 34 445555555555555 666666655555432 2
Q ss_pred HhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 780 GRSGRLAEAETFINKM-PVTPN---------------------DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
...+++.++.++..++ ...|+ ...|--|-..|+..++++.+..+++.+++++|.|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 2222333333333332 11121 2233334455677789999999999999999999998
Q ss_pred eehhhhHhhhcCCchHHHHHHHHHh
Q 001852 838 YVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 838 ~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..-|+..|. +++.+-..+.+-++
T Consensus 260 ~~~l~~~y~--~kY~~~~~~ee~l~ 282 (906)
T PRK14720 260 REELIRFYK--EKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHH--HHccCcchHHHHHH
Confidence 888888876 55555444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=77.55 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=135.0
Q ss_pred HHhHHhhHHHHcCChhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--------CChhhHH
Q 001852 569 VQNSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVY--------FDRFSLS 637 (1004)
Q Consensus 569 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~ 637 (1004)
.|--|....+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.|+.-.....+ ++...-.
T Consensus 321 AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 321 AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 344444444555555556666655443 36777888888899999999999999887543210 0100000
Q ss_pred HHHHHHhhhhhHHHHHHHH-HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcC
Q 001852 638 EGLAAAAKLAVLEEGHQLH-GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHG 713 (1004)
Q Consensus 638 ~ll~a~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 713 (1004)
. ........+....++| +.....+...|+.+...|.-+|--.|+++.|...|+.... .|...||-|...++...
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN 478 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc
Confidence 0 1222333444555555 4445566668888999999999999999999999998763 36678999999999999
Q ss_pred CHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 714 YFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
+.++|+..|++.++ ++|.-+ ....|.-.|...|.++||.++|-+..
T Consensus 479 ~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 479 RSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999 688654 55568889999999999999887664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=54.92 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR 633 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 633 (1004)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00026 Score=76.18 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=56.4
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~ 819 (1004)
+...|..++|+..++....+ .|+. ......++++.++++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34445555555555554332 2322 22333445555555555555555554 34444 3345555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
|+..++..+.-+|+|+..|.+|+..|...|+-.++...+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 5555555555555555555555555555555444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=54.12 Aligned_cols=35 Identities=31% Similarity=0.644 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc
Q 001852 92 ASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTG 126 (1004)
Q Consensus 92 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 126 (1004)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00028 Score=84.39 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=158.8
Q ss_pred CCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHH
Q 001852 665 DLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR--------PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTF 736 (1004)
Q Consensus 665 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~ 736 (1004)
+.+...|-..+......++++.|++++++.... -.-.|.++++....+|.-+...++|+++.+-.. .-..|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHH
Confidence 345667777777888889999999998876531 235799999988889988889999999987422 23458
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 001852 737 VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN---DLVWRSLLASSK 812 (1004)
Q Consensus 737 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~---~~~~~~ll~~~~ 812 (1004)
..|+..|...+.+++|.++++.|.++++ .....|...++.+.|...-++|.++++++ ..-|. ..+..-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999887 55677888889999999988999888775 33333 335566666678
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCC
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKI 866 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 866 (1004)
++||-|.|+.++|-++.-.|.....|..+.+.=...|.-+.++.+.+..-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 899999999999999999999988888888888888888888888877665443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=68.20 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVT 798 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~ 798 (1004)
+|++.+. ..| +......+...+...|++++|.+.|+...+. .+.+...+..+..++.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG-LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc-CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 344 3344555666666777777777777766542 1223455556666666667777777666654 333
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 799 PN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 799 p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|+ ...|..+...+...|+.+.|...++++++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 445666666666667777777777777777776544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.5e-05 Score=69.25 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeeh
Q 001852 764 GVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVL 840 (1004)
Q Consensus 764 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~ 840 (1004)
..+|+ ......++..+...|++++|.+.++.. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34553 366777889999999999999999887 55564 5688888888889999999999999999999999999999
Q ss_pred hhhHhhhcCCchHHHHHHHHHhh
Q 001852 841 YSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 841 l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
++.+|...|++++|....+...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998776544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0015 Score=70.61 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTF-VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCII 776 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 776 (1004)
...|-...-.+-..|+.++|+..++.++.. .||..-| ......+...|++++|.+.++++... .|+ ..-.-.+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHH
Confidence 344555555667789999999999998885 6655544 45567889999999999999999753 555 34444577
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 777 DLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
++|...|+..||...++.. ....|+..|..|..+|...||..++..+.. ..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHH
Confidence 8999999999999999887 344557799999999999999998877744 467778999999
Q ss_pred HHHHHHHhhC
Q 001852 855 ENVRRQMGWN 864 (1004)
Q Consensus 855 ~~~~~~m~~~ 864 (1004)
....+..+++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 8876665553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.094 Score=61.14 Aligned_cols=90 Identities=14% Similarity=0.323 Sum_probs=55.0
Q ss_pred HhHHHhhHHhcCChhh---HhhhcCCCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHH
Q 001852 671 TNAAMDMYGKCGEIGD---VLRIAPQPVDRPRLSW---NILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSAC 743 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~---A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~ 743 (1004)
.+.|+|++-+.++... |+-+++.....+..-| -.+|..|.-.|-...|.++|+.+--. +.-|..-|. +..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 4567777777776553 5555555544333333 34667777777777777777777654 666665554 34455
Q ss_pred hccCCHHHHHHHHHHhHh
Q 001852 744 NHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~ 761 (1004)
...|++.-+...++...+
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 566676666666665544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00096 Score=66.73 Aligned_cols=280 Identities=8% Similarity=0.057 Sum_probs=189.7
Q ss_pred hHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHH-HHHHhhh
Q 001852 571 NSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEG-LAAAAKL 646 (1004)
Q Consensus 571 ~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~ 646 (1004)
++.+.-..+..++++|.+++..-.++ +....+.|...|-...++.+|-..++++-.. .|...-|... ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 45555567778888998888766554 4556777888888888999999999988663 4544433322 2344455
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHH----hhHHhcCChhhHhhhcCCCCC-CChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAM----DMYGKCGEIGDVLRIAPQPVD-RPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
+....|..+..++.+. ....+..+ ...-..|++..++.+.++.+. .+..+.+......-+.|++++|++-
T Consensus 92 ~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 6666666666655432 11111111 122356788888888888884 5666666666667899999999999
Q ss_pred HHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-------------C--------CchHHHHHH--
Q 001852 722 FDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-------------G--------IEHCVCIID-- 777 (1004)
Q Consensus 722 ~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-------------~--------~~~y~~lv~-- 777 (1004)
|+...+- --...+.|+ +.-+..+.|+++.|+++...+++. |+.. + .-|-+.++.
T Consensus 167 FqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999886 222345566 444566788999999999888764 3221 1 123333443
Q ss_pred -----HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 778 -----LLGRSGRLAEAETFINKMP----VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 778 -----~l~r~g~~~eA~~~i~~m~----~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
++-+.|+++-|.+-+..|| -+.|+++...+. .--..|+.-.+.+-..-++++.|=.+.++..|--+|.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhh
Confidence 4568899999999999996 345666665542 123457777888888899999996666777777788888
Q ss_pred CCchHHHHHHHH
Q 001852 849 GRWDDVENVRRQ 860 (1004)
Q Consensus 849 g~~~~a~~~~~~ 860 (1004)
.-++-|+.|...
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 888888877543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=77.17 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=101.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVD 750 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~ 750 (1004)
-.+|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|++++++.++..+-|..........|...|+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 34556666777888889999988887777777778888888888899999999988753336556665666788999999
Q ss_pred HHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 001852 751 KGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 751 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
.|+.+.+++.+ +.|+ ...|..|+.+|...|++++|+-.++.+|+.|.
T Consensus 252 lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 252 LALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 99999999874 4665 47888999999999999999999999986653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=74.42 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 707 SVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.-+.+.+++++|+..|.+.++. .| |.+-|..-..||++.|.++.|++-.++.+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al------------------------- 142 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL------------------------- 142 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-------------------------
Confidence 3445666777777777777763 44 56666666666666666666666555543
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 786 AEAETFINKMPVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
.+.|... .|..|.-++...|++++|+++|+++++++|+|..
T Consensus 143 ----------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 143 ----------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred ----------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 2344433 7777777888888888888888888888888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00085 Score=80.44 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCC---ChhHHhHHHhhHHhcCChhhHhhhcCCCCC-CC-hhHHHHHH
Q 001852 633 RFSLSEGLAAAAKLAVLEEGHQLHGLATKL-GFDL---DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD-RP-RLSWNILI 706 (1004)
Q Consensus 633 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~-~~~~~~li 706 (1004)
+..|...+.-..+.+.++.|+++.+.+.+. ++.- -..+|.+++++----|.-+...++|++..+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345566666666777777777777666543 2211 234677777777777777778888888775 33 34677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCch---HHHHHHHHHhcC
Q 001852 707 SVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH---CVCIIDLLGRSG 783 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~lv~~l~r~g 783 (1004)
.-|.+.+..++|.++|+.|.+.+.-....|...+..+.+...-++|..++.++.+- -|..+| ..-.+++-.+.|
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcC
Confidence 88888888888888888888876656667888888888888888888888887652 344444 344556667788
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 784 RLAEAETFINKM-P-VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 784 ~~~eA~~~i~~m-~-~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+-+.+..+++.. . .......|+.++..-..||+.+-++.++|+++++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888887765 2 22345688888888889999999999999988864
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.2e-05 Score=51.59 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCC 226 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 226 (1004)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.4e-05 Score=51.03 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCC
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEI 327 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 327 (1004)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00027 Score=77.26 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcC
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSG 783 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g 783 (1004)
+++..+...++++.|+++|+++.+. .|+.. ..++..+...++-.+|.+++++..+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~---------------------- 228 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-DPEVA--VLLARVYLLMNEEVEAIRLLNEALK---------------------- 228 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHH----------------------
Confidence 3444445555666666666665553 34422 2244444444455555554444432
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 784 RLAEAETFINKMPVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 784 ~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
..| +...+......|...++.+.|..+++++.++.|++...|..|+.+|...|+|++|.-.-..+
T Consensus 229 -------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 229 -------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred -------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 122 23344444455677788889999999999999998888899999999999999988776665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=61.86 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC--chHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI--EHCVC 774 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~ 774 (1004)
.|..++..+ ..++...+.+.++++.+. .|+. .....+...+...|++++|...|+..... ...|.. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 345555555 377788888888888875 3332 34444566777888888888888888764 222222 23334
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVT-PNDLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~-p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
+..++...|++++|+..++..+.. ..+..+..++..+...|+.+.|+.+|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777888888888888775322 234456666666777777777777777653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0086 Score=59.16 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 709 FARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
+-..|++++|+++++..++.-+-|.+++.--+-+.-..|+--+|++-+....+. +..|.+.|.-+.++|...|.+++|
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 345677777777777777753336677776666666677777777777776663 345556666677777777888877
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC
Q 001852 789 ETFINKM-PVTPN-DLVWRSLLASSKIHG---NVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 789 ~~~i~~m-~~~p~-~~~~~~ll~~~~~~g---~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.-.++++ -+.|- +.....|....+..| |++.+.+.+++++++.|.+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 7777776 23343 335566666655554 88899999999999999653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.019 Score=57.27 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=98.1
Q ss_pred HHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH
Q 001852 656 HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT 735 (1004)
Q Consensus 656 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t 735 (1004)
.+.+.......+......-...|.+.|+.++|.+.......-+....|. ..+.+..+.+-|.+.+++|.+ --+..|
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--ided~t 171 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--IDEDAT 171 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cchHHH
Confidence 3444444444444444444556788888888888877744444443332 233455677778888888875 234445
Q ss_pred HHHHHHHHh----ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 001852 736 FVSLLSACN----HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~ 809 (1004)
.+-|..++. ..+.+.+|.-+|+.|.++ .+|+....+.+..+....|+++||+.+++.. ....++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 555555553 344577777777777653 4455555555555555666777777666665 22223334433333
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCC
Q 001852 810 SSKIHG-NVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 810 ~~~~~g-~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.-...| +.+--.+...++....|+++
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 332333 45555666666666666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00068 Score=61.66 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~ 809 (1004)
+..+...+...|++++|...|+.+.+.+.-.|. ...+..++.++.+.|++++|.+.++.. ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666666543322111 233444566666666666666666554 22222 345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 810 SSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 810 ~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
++...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777788888888888888888887654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00092 Score=65.46 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-C-HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-D-HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVC 774 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 774 (1004)
...+..+...+...|++++|+..|++.++. ..| + ...+..+...+.+.|++++|+.++++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 345666667777777777777777777654 122 1 245666677777777777777777776642 33 2344455
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
++.++...|+...|..-.... ...++.|...++++++++|++ |.-+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 556666666655544322211 123678899999999999987 5555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0028 Score=62.49 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG 780 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 780 (1004)
+..+.-+....|+.+.|...++++...+ |.+ ..-..-..-+-..|++++|++++++..++. +-+...|.--+-++-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 4445556667888999999999988875 533 222222334566899999999999998752 335567777777777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 781 RSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
..|+--+|.+-+... .+..|...|.-|...|...|+++.|.-.+|+++=+.|.++-++-.|+.++.-.|--+.-
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 788888999887776 57788899999999999999999999999999999999999999999999888774443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=48.16 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00093 Score=63.25 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHH
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPND----LVWRSLLASS 811 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~----~~~~~ll~~~ 811 (1004)
.++.+. ..|+..++...++.+.++++-.| .....-.+...+...|++++|.+.++... ..||+ .++..|...+
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 333344 47888899999999988765543 22445557788899999999999998873 33443 3566677788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
...|+++.|...++.. .-.|-.+..+.+++++|.+.|++++|...++.
T Consensus 96 ~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999999773 44455566888999999999999999998764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=47.94 Aligned_cols=31 Identities=29% Similarity=0.700 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 001852 92 ASWNNTMSGLVRLGLYQESVGFFNEMLSFGV 122 (1004)
Q Consensus 92 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 122 (1004)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=73.40 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=74.2
Q ss_pred CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHhhccCCC-HhHHHHHHHHHhcc--------CCHHHHHHHHHHhHh
Q 001852 696 DRPRLSWNILISVFARH-----GYFQKAIETFDEMLKYVKPD-HVTFVSLLSACNHG--------GLVDKGLQYYNTMTT 761 (1004)
Q Consensus 696 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 761 (1004)
..|..+|...+.|.... ++..+|..+|++.++ ..|| ...+..+..++... +.+.++.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45667777777765432 236789999999998 4775 44555443333211 112222333322221
Q ss_pred hcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 762 EFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 762 ~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
....+.+...|..+.-.....|++++|...++++ .+.|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1011222234444444444456666666666555 45555555555555566666666666666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00058 Score=54.23 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 776 IDLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
+..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+++.|...++++++++|++|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555666666666666665 444543 3666666666666777777777777777777653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.59 Score=54.87 Aligned_cols=121 Identities=12% Similarity=0.042 Sum_probs=79.5
Q ss_pred CChhhHHHhhccCC--CCchhHHHHHHHHH--HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 176 GHINKARRVFEEMP--VRNVVSWTSLMVAY--LDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 176 g~~~~A~~~f~~m~--~~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
+++..|....++.. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..+...+..+++..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45555555555543 3443 344445544 4678888888888777665543 6777777777788888888888888
Q ss_pred HHHHHhcCCCChhhhhHHHHHhhCCCCHH----HHHHHHhhCCCCCcchHHHH
Q 001852 252 GHVIKFGFHYTVPVANSLISMFGNFGSVK----EARCIFDSMHVRDTISWNSM 300 (1004)
Q Consensus 252 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~d~~~~~~l 300 (1004)
+...+.. |+......+..+|.+-+++. .|.++++..+++--.-|+.+
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 8776653 45666677777777777654 46667776666655566544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00097 Score=73.45 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
-...+...|++++|+.+|+++.+. .| +...|..+..+|.+.|++++|...++++ .+.|+ ...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 455666778888888888888752 44 3466667777888888888888877776 45554 446777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
+++.|+..++++++++|+++.....+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888888888887765555433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00091 Score=57.47 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=55.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCc
Q 001852 774 CIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 774 ~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
.++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++..|.++..+..++.+|...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3455555666666666666554 23333 245555566666667777777777777777777766666777777777777
Q ss_pred hHHHHHHHHH
Q 001852 852 DDVENVRRQM 861 (1004)
Q Consensus 852 ~~a~~~~~~m 861 (1004)
++|....+..
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 7776654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=9.4e-05 Score=62.45 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 858 (1004)
.|..+..++...|+.+.|..++++ .+.+|.++....+++..|.+.|+|++|.++.
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344444444444444444444444 4444444444444455555555555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=72.70 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhc
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRS 782 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~ 782 (1004)
.....+...|++++|+++|++.++..+.+...|..+..+|...|++++|+..++++.+ +.| +...|..++.+|.+.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456677889999999999999985333777888899999999999999999999975 355 447788889999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 001852 783 GRLAEAETFINKM-PVTPNDLVWRSLLASS 811 (1004)
Q Consensus 783 g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~ 811 (1004)
|++++|...+++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5666655444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.036 Score=66.65 Aligned_cols=85 Identities=8% Similarity=-0.030 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLG-RSGRLAEAETFINKMPVTPNDLVWRSLLASSKI 813 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~-r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~ 813 (1004)
+.-+-.-|....+++++..+++.+.+ ..|+ .....-+++.|. +=+......++++...+ +.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l--------------~~ 288 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDI--------------GN 288 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcc--------------cc
Confidence 33344455566677777777777753 3332 233334444443 11112222222222211 11
Q ss_pred c-CCHHHHHHHHHHHHhcCCCCCCC
Q 001852 814 H-GNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 814 ~-g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
. .++..+..-+|+.+..+|.+-..
T Consensus 289 ~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 289 NRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred CCccHHHHHHHHHHHeeecCCCEEE
Confidence 1 45666777788888777765443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=58.70 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=78.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CCCeehh
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD---DSSYVLY 841 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~---~~~~~~l 841 (1004)
..|-..+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556778888999999999999887 33343 3467778888999999999999999999999986 4568899
Q ss_pred hhHhhhcCCchHHHHHHHHHhhC
Q 001852 842 SNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 842 ~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
+.+|...|++++|.+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999988877653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00036 Score=56.24 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcC-CchHHHHHHHH
Q 001852 800 NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATG-RWDDVENVRRQ 860 (1004)
Q Consensus 800 ~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~ 860 (1004)
++.+|..++..+...|+++.|+..++++++++|+++..+..+|.+|...| ++++|.+..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 68888776554
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=54.00 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
|..+...+...|++++|+..|++..+..+.+...+..+...+...|++++|..+|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666655322233444445555555555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.04 Score=55.06 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCCchHH----HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCV----CIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~----~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
+..++|-|...++.|.+- .- -.+.+ ..|.+..-.+++.+|.-++++| ...|++.+.+-.+.+|...||++
T Consensus 149 k~~r~d~A~~~lk~mq~i---de-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---ch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 444555566666666431 11 12222 2333334455666677667666 35666666666666666667777
Q ss_pred HHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 819 LAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
+|+...+.++..+|++|.....+.-.--..|+-.++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 777777777776666654333332233334554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=9.9e-05 Score=49.31 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 824 AEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999985
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=57.86 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP--DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVC 774 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 774 (1004)
...|..+...+...|++++|+..|++.+.. ..| ...++..+...+.+.|+.++|+.++++..+. .|. ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 456788888888899999999999998875 222 1247788888899999999999999888753 343 345555
Q ss_pred HHHHHH-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 775 IIDLLG-------RSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 775 lv~~l~-------r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
+..++. +.|++++|.. ..+.|...++++++++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 555665 3333333222 2446777788888888865
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0081 Score=56.06 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=79.5
Q ss_pred cCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCee
Q 001852 763 FGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYV 839 (1004)
Q Consensus 763 ~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~ 839 (1004)
.|++++. +..-....-+-..|++++|..+|.-. -..| +..-|..|..+|...|+++.|...+..+..++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3555543 22222344455789999999998775 2222 3447899999999999999999999999999999999999
Q ss_pred hhhhHhhhcCCchHHHHHHHHHhh
Q 001852 840 LYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 840 ~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..+..|...|+.++|........+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999997776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.035 Score=59.23 Aligned_cols=150 Identities=14% Similarity=0.190 Sum_probs=73.5
Q ss_pred hHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHhhccC-C-C----HhHHHHHHHHHh
Q 001852 672 NAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARH-GYFQKAIETFDEMLKYVK-P-D----HVTFVSLLSACN 744 (1004)
Q Consensus 672 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~-p-d----~~t~~~ll~a~~ 744 (1004)
...+++|.+.|++..|-+.+ ..+...|... |++++|++.|++..+.+. . + ..++..+...+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 33445666666666654443 3355566666 777777777777766511 1 1 124455566677
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC----C-chHHHHHHHHHhcCChHHHHHHHHhC-CCCC---C---HHHHHHHHHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAG----I-EHCVCIIDLLGRSGRLAEAETFINKM-PVTP---N---DLVWRSLLASSK 812 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~----~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p---~---~~~~~~ll~~~~ 812 (1004)
..|++++|.++|++.....--.|- . .+|...+-++-..|+...|.+.+++. ...| + ......|+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 777777777777776553211111 1 22223333444456677777666654 2222 1 224555666654
Q ss_pred hc--CCHHHHHHHHHHHHhcCC
Q 001852 813 IH--GNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 813 ~~--g~~e~a~~~~~~~~~l~p 832 (1004)
.. ..++.+..-++++.+|||
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 43 244455555554444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.76 Score=50.85 Aligned_cols=155 Identities=12% Similarity=0.188 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCII 776 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 776 (1004)
..+|...+..-.+..-.+.|..+|.+..+. ..+ +.....+++. |--+++.+-|.++|+.=.+.||..|- .-.+.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~--yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPE--YVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChH--HHHHHH
Confidence 356888888888887888999999999998 666 4444444444 44567889999999998887766553 344677
Q ss_pred HHHHhcCChHHHHHHHHhC-C--CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----CeehhhhHhhh
Q 001852 777 DLLGRSGRLAEAETFINKM-P--VTPND--LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS----SYVLYSNVCAA 847 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~--~~p~~--~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~ 847 (1004)
|.|.+.++-..|..++++. + +.||- .+|..+|.--..-||+....++-++-+.--|.+-. .-.++-+-|--
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 8999999999999999887 2 45554 49999999999999999999999998887773211 22344455666
Q ss_pred cCCchHHHH
Q 001852 848 TGRWDDVEN 856 (1004)
Q Consensus 848 ~g~~~~a~~ 856 (1004)
.+.+..-..
T Consensus 523 ~d~~~c~~~ 531 (656)
T KOG1914|consen 523 LDLYPCSLD 531 (656)
T ss_pred cccccccHH
Confidence 666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00053 Score=54.49 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|....+...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999998887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=62.75 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.+|..+...+...|+.+.|+..++++++..|+++..+..++.+|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4666667777777777888888888888888777777777777777666
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=62.87 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV 844 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~ 844 (1004)
..|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.+.|+..++++++++|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34455556666677777777776665 22222 34788888889999999999999999999999999999999999
Q ss_pred hh-------hcCCchHHHHH
Q 001852 845 CA-------ATGRWDDVENV 857 (1004)
Q Consensus 845 y~-------~~g~~~~a~~~ 857 (1004)
|. ..|++++|...
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHhhHHHHHcccHHHHHHH
Confidence 98 77787755443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.75 Score=49.49 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=51.4
Q ss_pred hHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 001852 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYY 756 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 756 (1004)
-+...|....|.++..+..-||-.-|-..+.+|+..+++++-.++... +-.++-|--.+.+|...|...+|..+.
T Consensus 186 ~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 334455555565555555555555566666666666666554443221 112244555555555556666665555
Q ss_pred HHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 001852 757 NTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 757 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
..+. +.--+++|.+.|.+.+|.+..
T Consensus 261 ~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 261 PKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5421 123445555566665555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.005 Score=64.89 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=115.4
Q ss_pred hHHHHHH-HHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHH----
Q 001852 700 LSWNILI-SVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC---- 774 (1004)
Q Consensus 700 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~---- 774 (1004)
.+|..+- .++...|+.++|...--..++.-..+......-..++-..+..+.|...|++.. .+.|+ |+..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpd--h~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPD--HQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh---ccChh--hhhHHhHh
Confidence 4555543 455778899999888777776422233333333344556778899999888764 33343 3221
Q ss_pred -----------HHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 775 -----------IIDLLGRSGRLAEAETFINKM-PVTP-----NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 775 -----------lv~~l~r~g~~~eA~~~i~~m-~~~p-----~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
=.+-..+.|++.+|.+.+... .+.| ++-.|.....+...+|+.+.|+.-.+.+++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 234566899999999999876 4444 45567777777888999999999999999999999999
Q ss_pred eehhhhHhhhcCCchHHHHH-HHHHhh
Q 001852 838 YVLYSNVCAATGRWDDVENV-RRQMGW 863 (1004)
Q Consensus 838 ~~~l~~~y~~~g~~~~a~~~-~~~m~~ 863 (1004)
|..-++.|...++|++|.+- .+.|+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999874 555553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0015 Score=54.99 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhhccC--CCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHH
Q 001852 712 HGYFQKAIETFDEMLKYVK--PDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA 788 (1004)
.|++++|+.+|+++.+..+ |+...+..+..++.+.|++++|..+++. . ...|.. ...-.++.+|...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777776511 2344444566777777777777777766 2 112211 2222335666666666666
Q ss_pred HHHHHh
Q 001852 789 ETFINK 794 (1004)
Q Consensus 789 ~~~i~~ 794 (1004)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=62.63 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHH
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSA-CNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDL 778 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 778 (1004)
.+|..++....+.+..+.|-.+|.+.++...-....|...... +...++.+.|..+|+...+.++- +...+.+.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 4677778877777778888888888875322234445544444 33456666688888888876433 44556677788
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 779 LGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
+.+.|+.+.|..++++. ..-|. ..+|...+.--..+|+++....+.+++.++-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888888888888875 22233 349999999999999999999999999999988544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=54.67 Aligned_cols=274 Identities=19% Similarity=0.191 Sum_probs=171.5
Q ss_pred HhHHhhHHH--HcCChhhHHHHHhcCC---CCCHhHHHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCh--hhHHHHH
Q 001852 570 QNSLITMYA--KCGDLNSSNYIFEGLA---EKNSVTWNAMIAA--NALHGQGEEVLKLLVKMRHTGVYFDR--FSLSEGL 640 (1004)
Q Consensus 570 ~~~Li~~y~--k~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll 640 (1004)
|.+|-.++. -.|+-..|+++-.+.. ..|....--++.+ -.-.|++++|.+-|+.|... |.. .-+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444443 3567777777766543 2354444444443 34478999999999999862 221 1222233
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChh--HHHHHHHHHHh--
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRL--SWNILISVFAR-- 711 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~-- 711 (1004)
-..-..|..+.++++-+..-..-.. -.-.+.+.++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3334567777777776665443322 23456778888889999999999887643 34442 22233333322
Q ss_pred -cCCHHHHHHHHHHHhhccCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 712 -HGYFQKAIETFDEMLKYVKPDHVTF-VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 712 -~g~~~~A~~l~~~m~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
.-+...|...-.+..+ +.||-+.- +.-..++...|++.+|-.+++.+- ...|.++..... ...|.|+ -++
T Consensus 241 ldadp~~Ar~~A~~a~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY--~~ar~gd--ta~ 312 (531)
T COG3898 241 LDADPASARDDALEANK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLY--VRARSGD--TAL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHH--HHhcCCC--cHH
Confidence 2356667666666666 57876543 334578899999999999999985 445665543222 2234454 333
Q ss_pred HHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc-CCchHHHH
Q 001852 790 TFINKM----PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT-GRWDDVEN 856 (1004)
Q Consensus 790 ~~i~~m----~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~ 856 (1004)
.-+++. .++|+.. .-.++..+-...|++-.|...+|.+...+|.. ++|.+|+++-... |+-.++..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHH
Confidence 333332 4677754 55566677778899999999999999999975 5688999987665 76665544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=65.17 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=79.1
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 768 GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIH---GNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 768 ~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~---g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
|.+-|..|...|.+.|+.++|..-+.+. .+.|+ +.+|..+..++... .+..+|+.++++++++||.|.....+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5577777777777777777777777665 34444 55777777665444 2678999999999999999999999999
Q ss_pred hHhhhcCCchHHHHHHHHHhhCCCc
Q 001852 843 NVCAATGRWDDVENVRRQMGWNKIK 867 (1004)
Q Consensus 843 ~~y~~~g~~~~a~~~~~~m~~~~~~ 867 (1004)
-.+...|++.+|...++.|.+....
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999875443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.19 Score=56.21 Aligned_cols=166 Identities=15% Similarity=0.171 Sum_probs=90.7
Q ss_pred hHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHH
Q 001852 575 TMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 575 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 654 (1004)
+.++-.|++.+|-++| .++|.-..|+++|..|+-- -..+-+...|.-++-+.
T Consensus 640 ~~~Ay~gKF~EAAklF------------------k~~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLF------------------KRSGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhhhhHHHHHHHH------------------HHcCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHH
Confidence 3345567777777766 3456666777777766421 11122233333333333
Q ss_pred HHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh
Q 001852 655 LHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHV 734 (1004)
Q Consensus 655 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~ 734 (1004)
+...-.+ ..-++.--.+-..|+...|+.++|..+. +.+|-.+-++++-+++- ..+..
T Consensus 692 L~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld---~~ere 748 (1081)
T KOG1538|consen 692 LIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD---KAERE 748 (1081)
T ss_pred HHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc---hhhhh
Confidence 3221111 1111111234456677778877776543 34455555555544442 22334
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPND 801 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~ 801 (1004)
+...+..-+.+.....-|-++|.+|-. ...+|++....|+|+||..+.++.| +.||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 444444444455566677788887743 2457888888899999999988886 55554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0015 Score=52.39 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
..|+++.|+..++++++.+|+++..+..|+.+|.+.|++++|..+.+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466666666666666666666666666666666666666666655543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0042 Score=63.13 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchH
Q 001852 776 IDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDD 853 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 853 (1004)
.+-+...+++++|...+.+. .+.|. ++.|..-..+|.+.|.++.|++.++.++++||..+.+|-.|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34556778888888888876 66665 45667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001852 854 VENVRRQMG 862 (1004)
Q Consensus 854 a~~~~~~m~ 862 (1004)
|.+.+++-.
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 999877643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.018 Score=53.94 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=42.9
Q ss_pred CCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCCe
Q 001852 764 GVPAGIEHCVCIIDLLGRSGRLAEAETFINKM---PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS--DDSSY 838 (1004)
Q Consensus 764 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m---~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~--~~~~~ 838 (1004)
.+.|+..+--.+...+.+.|+..||...+++. ++--|..+...+..+...-++...|...+|++++..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 33444444444444444445544444444443 33344444444444444444444455555555444442 23334
Q ss_pred ehhhhHhhhcCCchHHHHH
Q 001852 839 VLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 839 ~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+++..|+..|+..+|+..
T Consensus 164 Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 164 LLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHHHhcCCchhHHHH
Confidence 4444444444554444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0026 Score=51.17 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG-NVELAKKAAEHLFELDP 832 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g-~~e~a~~~~~~~~~l~p 832 (1004)
..|..++..+.+.|++++|+..+++. ...|+ +.+|..+..++...| +.+.|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666777777777766664 45565 448888888899999 79999999999999998
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0028 Score=51.64 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 809 ASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 809 ~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+...++++.|..+++++++++|+++..+..++.+|...|+|++|.+..+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455667788888888888888888888888888888888888888877665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00097 Score=53.51 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=27.1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL 802 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~ 802 (1004)
..|++++|+++|+++.+. .| +.+.+..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 345556666666655442 22 3344444555555555555555555555 3444433
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.1 Score=48.18 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=80.8
Q ss_pred HhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHH
Q 001852 573 LITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 573 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 652 (1004)
.+.-+...|....|.++-.+..-+|---|-..+.+|+..+++++-.++... +-+++-|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 345556778999999999999888999999999999999999987775432 22458888999999999998888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhh
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRI 690 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 690 (1004)
..+...+ .+..-+.+|.+||++.+|.+.
T Consensus 257 ~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 8776552 225568899999999888655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.82 Score=48.46 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=136.0
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCCChhH--HhHH
Q 001852 601 WNAMIAANAL--HGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAK--LAVLEEGHQLHGLATKLGFDLDPFV--TNAA 674 (1004)
Q Consensus 601 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 674 (1004)
|.+|-.|+.- .|+...|.++-.+-... +..|...+..+|.+-.. .|+.+.+++-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444443 45666666665554432 55666667777765543 47777777777777641 11111 1222
Q ss_pred HhhHHhcCChhhHhhhcCCCCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhH--HHHHHHHHhc--
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDR--P-RLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVT--FVSLLSACNH-- 745 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t--~~~ll~a~~~-- 745 (1004)
.---.+.|..+.|+..-+..... . .-.|.+.+...+..|+++.|+++.+.-+.. +.||..- -..||.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22334667777777666655432 2 245677777777888888888887776665 6665431 2223322211
Q ss_pred -cCCHHHHHHHHHHhHhhcCCCCCCchHHHH-HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 001852 746 -GGLVDKGLQYYNTMTTEFGVPAGIEHCVCI-IDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAK- 821 (1004)
Q Consensus 746 -~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-v~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~- 821 (1004)
.-+...|+..-... .++.|+...-..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|..+. ..+.|+..+..
T Consensus 241 ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence 12334444433222 3556665433322 35677788888888888777 6777777775443 33455544332
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCch
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWD 852 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 852 (1004)
+-++++-.+.|+|......++..-...|++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 3355666677777776666665544445443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0022 Score=46.06 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.+|..|..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988877764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.15 Score=54.37 Aligned_cols=129 Identities=23% Similarity=0.313 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhcc-CCHHHHHHHHHHhHhhcCCCCC----CchHHHHHH
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHG-GLVDKGLQYYNTMTTEFGVPAG----IEHCVCIID 777 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~ 777 (1004)
..-+..|...|+...|-+.+.+ +...|... |++++|+++|++..+.|..... ...+.-+++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3345666667776666665555 44567777 8999999999998876544433 255667889
Q ss_pred HHHhcCChHHHHHHHHhC---CCCC---CHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCCC--eehhhhHh
Q 001852 778 LLGRSGRLAEAETFINKM---PVTP---NDLVWRSLLA---SSKIHGNVELAKKAAEHLFELDPSDDSS--YVLYSNVC 845 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m---~~~p---~~~~~~~ll~---~~~~~g~~e~a~~~~~~~~~l~p~~~~~--~~~l~~~y 845 (1004)
++.+.|++++|.+++++. .... ...+-..++. .+...||...|...+++..+.+|.-... +.++.++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 999999999999999875 1211 1122222222 3345689999999999999999976554 44444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=53.80 Aligned_cols=88 Identities=9% Similarity=-0.061 Sum_probs=54.1
Q ss_pred HHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCC
Q 001852 673 AAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 673 ~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~ 748 (1004)
++...+...|++++|.++|+-... .+..-|-.|...+...|++++|+..|...... .| |..++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHcCC
Confidence 344445556666666666665442 23455666666666666777777766666663 34 55566666666666667
Q ss_pred HHHHHHHHHHhHh
Q 001852 749 VDKGLQYYNTMTT 761 (1004)
Q Consensus 749 ~~~a~~~~~~m~~ 761 (1004)
.+.|++.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=48.65 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCC-CCChhhHHHHHHhhcCCC--------ChhhHHHHHHHHHHhcCCCchHHHH
Q 001852 298 NSMISVYSHSGLCDQSLKCFHWMRHVGQ-EINSTTFSTLLSACGSVD--------NLKWGRGIHGLAVKLALNSNVWVCN 368 (1004)
Q Consensus 298 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 368 (1004)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 999999999999977543 2445677889999999999999999
Q ss_pred HHHHHHHh
Q 001852 369 TLLAMYSE 376 (1004)
Q Consensus 369 ~Li~~y~~ 376 (1004)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.17 Score=54.78 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=98.0
Q ss_pred hHHhcCChhhHhhhcCCCCCC---Ch----hHHHHHHHHHHh---cCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHh-
Q 001852 677 MYGKCGEIGDVLRIAPQPVDR---PR----LSWNILISVFAR---HGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACN- 744 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~- 744 (1004)
.|....+++.-+++++.+... ++ ..-....-++-+ .|+.++|++++..++.. ..++..||..++..|-
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 455566666666666655432 11 111223445556 78899999999886655 6677777777766542
Q ss_pred --------ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH----HHH--------HhCCCCC--CHH
Q 001852 745 --------HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE----TFI--------NKMPVTP--NDL 802 (1004)
Q Consensus 745 --------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~----~~i--------~~m~~~p--~~~ 802 (1004)
.....++|+..|.+. |.+.|+..+=-.++-++..+|...+.. ++. ++-...+ |--
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 122467888888766 566666544444555666666533332 222 1111233 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+.+++.++...||.+.|.+++++++++.|..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55899999999999999999999999998753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.027 Score=62.10 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 001852 296 SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYS 375 (1004)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 375 (1004)
|..++|+.|.+.|..+.+++++..=...|+-||.+|++.||..+.+.|++..|.++...|...+...+..++..-+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 34577777777777777777777777778888888888888888888888888888777777766666666555555555
Q ss_pred hc
Q 001852 376 EA 377 (1004)
Q Consensus 376 ~~ 377 (1004)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 54
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.055 Score=48.53 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc-cCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHH
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKY-VKPD--HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLL 779 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~-~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l 779 (1004)
.+..++-..|+.++|+.+|++.+.. ..+. ...+..+.+++.+.|++++|..+|+.....+.-.+.. ..-..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3566778889999999999999886 3332 3467788899999999999999999888765332222 2222345577
Q ss_pred HhcCChHHHHHHHHh
Q 001852 780 GRSGRLAEAETFINK 794 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~ 794 (1004)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999999887643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.045 Score=58.10 Aligned_cols=127 Identities=11% Similarity=0.069 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHH-HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAA-AAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 678 (1004)
+|..++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555556666666555321 1111112111111 11234444466666655554 445666777777777
Q ss_pred HhcCChhhHhhhcCCCCC--C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 679 GKCGEIGDVLRIAPQPVD--R----PRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.+.|+.+.|+.+|++... + -...|...+.--.++|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888877776653 1 2246777777777778888777777777774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.22 Score=51.45 Aligned_cols=161 Identities=10% Similarity=-0.012 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCch-HHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH-VT---FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH-CVCII 776 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv 776 (1004)
+-.....+...|++++|++.|++.... .|+. .+ ...++.++.+.|++++|...|++..+.++-.|+... +--++
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 333445555667777777777777764 3322 22 234556667777777777777777776666665531 11111
Q ss_pred HHHHhcC---------------C---hHHHHHHH----HhCCCCC---CHHH-----HH-------HHHHHHHhcCCHHH
Q 001852 777 DLLGRSG---------------R---LAEAETFI----NKMPVTP---NDLV-----WR-------SLLASSKIHGNVEL 819 (1004)
Q Consensus 777 ~~l~r~g---------------~---~~eA~~~i----~~m~~~p---~~~~-----~~-------~ll~~~~~~g~~e~ 819 (1004)
-..-..+ + ..+|.+.+ ++-|-.+ ++.. -+ ....-|.+.|+..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 1100000 1 12333333 3333221 1110 01 11223667789999
Q ss_pred HHHHHHHHHhcCCCCCC---CeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 820 AKKAAEHLFELDPSDDS---SYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
|..-++.+++--|+.+. +...+.+.|...|.-++|..+.+.+..
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999998887655 566788899999999999998876643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.029 Score=64.67 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=93.3
Q ss_pred cCCCHhHHHHHHHHHhcc--C---CHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhc--------CChHHHHHHHHh
Q 001852 729 VKPDHVTFVSLLSACNHG--G---LVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRS--------GRLAEAETFINK 794 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~--g---~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~--------g~~~eA~~~i~~ 794 (1004)
.++|...|...+.+..+. + ..++|+.+|++..+ +.|+- ..|..+..++... +++++|.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345778888888775543 2 37799999999975 57764 4555544433221 234455555554
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 795 M---P-VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 795 m---~-~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
. + ...++.++.++.-.....|+.+.|+..++++++++| +..+|+.++.+|...|+.++|....+...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 2 333456788777777778999999999999999999 57799999999999999999999765543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.037 Score=61.10 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=89.6
Q ss_pred HHHHHHH---cCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh--cCCCChhhhhHHHHHhhCCCCHHHHHHHHhhC
Q 001852 215 LYRYMRR---EGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF--GFHYTVPVANSLISMFGNFGSVKEARCIFDSM 289 (1004)
Q Consensus 215 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 289 (1004)
++..|.+ .+.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 345566777777888887777777777777666655 23233445567888888888888888777654
Q ss_pred C----CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC
Q 001852 290 H----VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV 342 (1004)
Q Consensus 290 ~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 342 (1004)
. -||..|+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 3 3677888888888888888888888888887777777777777777666543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.007 Score=49.29 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCe
Q 001852 777 DLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSY 838 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~ 838 (1004)
.+|.+.+++++|.+.++.+ ...|+. ..|..+...+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888887 555654 4777777788888999999999999999999876543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=47.95 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhcCC-cCCHhhHHHHHHhhcCCC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 001852 399 NSLVASHVQDEKYIDALKIFSNMLQKQR-LVNYVTFTSALAACSDPG--------FVVQGKIIHALVITMGLHDNLIVGN 469 (1004)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 469 (1004)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....++..|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 899999999999976543 3456677889999999999999999
Q ss_pred HHHHHHHc
Q 001852 470 ALVSMYAK 477 (1004)
Q Consensus 470 ~Li~~y~~ 477 (1004)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.059 Score=56.16 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 777 (1004)
|+.-+..+.+.|++++|+..|++.++. .|+. ..+..+..++...|++++|...|+.+.+.|...|..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-------- 216 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-------- 216 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------
Confidence 333333334456777777777776664 3432 244556666666666666666666665544332211
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 778 LLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
+..|..++..+...|+.+.|...++++++..|+..
T Consensus 217 -----------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 217 -----------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 22344455556677888888888888888888653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.7 Score=51.87 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=48.8
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 001852 331 TFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEK 410 (1004)
Q Consensus 331 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 410 (1004)
+...+-.-+.+...+..|.++|..|-.. .+++++....+++++|..+-+..++--...|-.-..-++...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333444555666666666655322 4577788888999999999888887433334444444555555
Q ss_pred HHHHHHHHHH
Q 001852 411 YIDALKIFSN 420 (1004)
Q Consensus 411 ~~~A~~l~~~ 420 (1004)
+++|.+.|.+
T Consensus 820 FeEAqkAfhk 829 (1081)
T KOG1538|consen 820 FEEAQKAFHK 829 (1081)
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.024 Score=58.99 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---Ceehhh
Q 001852 771 HCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS---SYVLYS 842 (1004)
Q Consensus 771 ~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~---~~~~l~ 842 (1004)
.|..-++++.+.|++++|...++.. ...|+ +.++..|+.++...|+++.|...++++++..|+++. ++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777666554 22333 235666888899999999999999999999888654 555668
Q ss_pred hHhhhcCCchHHHHHHHHHhh
Q 001852 843 NVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 843 ~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+|...|++++|.++.+...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=47.85 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=92.3
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC-CCCchHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCCH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVP-AGIEHCVCIIDLLGRSGRLAEAETFINKM-PV-----TPND 801 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~-----~p~~ 801 (1004)
.-|....-..|..+....|+..||...|.+... |+- -+....-.+..+....++..+|...+++. .. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 466666666788888888888888888887765 443 34455556666777778888888888775 22 3443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
...+...+...|..+.|+.++|.++..-|. +..-...+..++++|+.+++..-...+
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334566778889999999999999998885 455677788999999988886644333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=4 Score=46.60 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=31.5
Q ss_pred cCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHh
Q 001852 564 ESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKM 624 (1004)
Q Consensus 564 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 624 (1004)
+.+....-.+.+|+.+.|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555566677777777777766665444332 2234455556666666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.39 Score=47.97 Aligned_cols=163 Identities=11% Similarity=-0.012 Sum_probs=110.9
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC--CHh--------HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHH
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK--NSV--------TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEG 639 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 639 (1004)
+++|+..|.-..-+++-...|+.-..+ .+. .-+.++..+.-.|.+.-.+.++++..+...+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 466777776666666666666644332 222 3355666667778888888888888886555566666666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHh-----CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHh
Q 001852 640 LAAAAKLAVLEEGHQLHGLATKL-----GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFAR 711 (1004)
Q Consensus 640 l~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 711 (1004)
.+.-.+.|+.+.+...++.+.+. ++.....+.......|.-+.++.+|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 67777889999999888877764 3333444444555567777788888888887764 355566665555566
Q ss_pred cCCHHHHHHHHHHHhhccCCCH
Q 001852 712 HGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.|+..+|++..+.|.+. .|.+
T Consensus 299 lg~l~DAiK~~e~~~~~-~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ-DPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhcc-CCcc
Confidence 78888899998888885 4433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.6 Score=44.44 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=127.7
Q ss_pred hhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHHHH
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSLLS 741 (1004)
Q Consensus 668 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~ 741 (1004)
..........+...+.+..+...+.... ......+..+...+...++..++++.+...... .++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHH
Confidence 4555666677777777777776666543 234456666777777778888888888888774 222 122222333
Q ss_pred -HHhccCCHHHHHHHHHHhHhhcCCCC----CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 001852 742 -ACNHGGLVDKGLQYYNTMTTEFGVPA----GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN--DLVWRSLLASSKI 813 (1004)
Q Consensus 742 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~--~~~~~~ll~~~~~ 813 (1004)
++...|.+++|...|+.... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888888888888888743 333 2233333444456678888888887776 34444 5677777778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.++.+.|...+..+++..|.....+..++..+...|+++++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 888888889988888888886666677777777667677777655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.9 Score=48.06 Aligned_cols=145 Identities=11% Similarity=-0.003 Sum_probs=81.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHH----HHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC
Q 001852 267 NSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMI----SVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV 342 (1004)
Q Consensus 267 ~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 342 (1004)
..-+++..+...++.|..+-+.-..+ ..+-..+. +-+-+.|++++|...|-+-... +.| +.+++-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 34456666666677777766554322 22222222 2344678888888877665432 222 2334444444
Q ss_pred CChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCc-chHHHHHHHHHcCCCHHHHHHHHH
Q 001852 343 DNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDS-VSWNSLVASHVQDEKYIDALKIFS 419 (1004)
Q Consensus 343 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~ 419 (1004)
..+..-..+++.+.+.|+... ..-+.|++.|.|.++.+.-.+..+....-.. .-....+..+.+.+-.++|..+-.
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 455555566777777786543 3346788999999988888887776662111 113344444455555555544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.044 Score=49.19 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCCCeehhhhHhhhcCCchHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPS---DDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
.+-.|.++++..|++++|..++++.++-.|+ +....+.++-.+...|++++|..
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555566666666666666666665555 44455555556666666666655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.021 Score=62.24 Aligned_cols=60 Identities=22% Similarity=0.096 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC---eehhhhHhhhcCCchHHHHHHHH
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS---YVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 801 ~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
...|..+..++...|++++|...++++++++|+++.+ |..++.+|+..|+.++|....+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467777777777777777777777777777777644 77777777777777777664333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.067 Score=52.23 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=68.3
Q ss_pred HHhhccC--CCCchhHHHHHHHHHHh-----CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccC------------
Q 001852 182 RRVFEEM--PVRNVVSWTSLMVAYLD-----NGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTE------------ 242 (1004)
Q Consensus 182 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 242 (1004)
...|+.. ..++..+|..+|..|.+ .|..+-....+..|.+-|+.-|..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 35777888888888764 4667777778888888888888888888888875422
Q ss_pred ----ChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCC
Q 001852 243 ----NDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG 277 (1004)
Q Consensus 243 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 277 (1004)
+.+.|..+++.|...|+-||..++..|++.|++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22346667777777777777777777777776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=4.4 Score=47.60 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=71.8
Q ss_pred hHHHHHHHccCChhHHHHHhcccCCCChhhHHHHH---HHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccC
Q 001852 64 NTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTM---SGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSG 140 (1004)
Q Consensus 64 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 140 (1004)
.+-++++.+..-++.|..+-..-..+....-+.+. +-+.+.|++++|...|-+-... +.| +.+++-+-...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 45567777777778888776554433222222222 3355789999998887765432 233 23444444444
Q ss_pred cchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC
Q 001852 141 FMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP 189 (1004)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 189 (1004)
.+. .....+..+.+.|+. +...-+.|+++|.|.++.+.-.+..+...
T Consensus 412 ~Ik-nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIK-NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHH-HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 444 445556666677765 34445678889998888887777766654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=5.6 Score=45.54 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred cCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC----HhhHHHHHHhhcCCCChHHHHHH
Q 001852 377 AGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN----YVTFTSALAACSDPGFVVQGKII 452 (1004)
Q Consensus 377 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~ 452 (1004)
.|++++|.+++-+|..+|.. |..+.+.|++-...++++.- |-..| ...+..+-...+....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888777643 44455555555555544321 11111 11233333333333344444444
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHH
Q 001852 453 HALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYK 520 (1004)
Q Consensus 453 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 520 (1004)
+..--.. ...+.+|-+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 3322110 1133334444444444444444432 33334445556666666666655553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.099 Score=51.10 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=67.6
Q ss_pred HHHHhhC--CCCCcchHHHHHHHHHhC-----CCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC-------------
Q 001852 283 RCIFDSM--HVRDTISWNSMISVYSHS-----GLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV------------- 342 (1004)
Q Consensus 283 ~~~f~~m--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 342 (1004)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 455677777777777643 55555666677788888888888888888776432
Q ss_pred ---CChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 001852 343 ---DNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAG 378 (1004)
Q Consensus 343 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 378 (1004)
.+-+-|.+++++|...|+-||..++..|++.+.+.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234667788888888888888888888888776544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=6.8 Score=45.52 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=55.6
Q ss_pred hHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 001852 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYY 756 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 756 (1004)
-+...|+...|.++-.+..-||-..|---+.+++..+++++-+++-..+. + ++-|.-...+|.+.|+.+||.+|+
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk----s-PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK----S-PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC----C-CCCchhHHHHHHhcccHHHHhhhh
Confidence 34445666666666666655555555555566666666665544444332 1 333444556666666666666665
Q ss_pred HHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 001852 757 NTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 757 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
.+... +.-.+.+|.+.|.+.||.++.
T Consensus 768 prv~~----------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 768 PRVGG----------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccCC----------hHHHHHHHHHhccHHHHHHHH
Confidence 54421 113456666666666665553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.7 Score=43.43 Aligned_cols=58 Identities=16% Similarity=-0.012 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhH----HHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001852 603 AMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSL----SEGLAAAAKLAVLEEGHQLHGLATKL 662 (1004)
Q Consensus 603 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 662 (1004)
.....+.+.|++++|++.|+++... .|+.... ..+..++-+.++.++|...++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455667777777777776653 3332211 11223334445555555555444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.22 Score=53.27 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=91.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~ 819 (1004)
.+.+.+.|++..|..-|++...-... .+.-..+|...+. . .-...+.+|..++.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-~----~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-A----LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-H----HHHHHhhHHHHHHHhhhhHHH
Confidence 44567788888888887776542111 0111112222111 1 113356777777788899999
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHH
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYA 899 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 899 (1004)
|++..+++|+++|+|..+..--+.+|...|.++.|....+++.+ ..|..++|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~ 329 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHH
Confidence 99999999999999999999999999999999999998777764 2467788888
Q ss_pred HHHHHHHHHHH
Q 001852 900 KLEELKKMIKE 910 (1004)
Q Consensus 900 ~l~~l~~~~~~ 910 (1004)
.|..|..++++
T Consensus 330 el~~l~~k~~~ 340 (397)
T KOG0543|consen 330 ELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHH
Confidence 89888887775
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.13 E-value=3.4 Score=44.49 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=136.3
Q ss_pred hHHHHcCChhhHHHHHhcCCCCCHhH-HHHHHH--HHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHH
Q 001852 575 TMYAKCGDLNSSNYIFEGLAEKNSVT-WNAMIA--ANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEE 651 (1004)
Q Consensus 575 ~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 651 (1004)
.++.-.|++++|..+--.+.+-|... +...+. .+--+++.+.|..-|++-+. ..||...- +..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~s----------k~~~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKS----------KSASM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhH----------HhHhh
Confidence 44556788888887766665544332 222232 34456788899998988776 34554332 22222
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC-------CChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 652 GHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD-------RPRLSWNILISVFARHGYFQKAIETFDE 724 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 724 (1004)
....+...... .+...|.|.+.+|.+.+.+... ++...|.....+..+.|+.++|+.-.+.
T Consensus 245 ~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 22222222222 2456688999999998887764 2344566777788899999999999888
Q ss_pred HhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 001852 725 MLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLV 803 (1004)
Q Consensus 725 m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~ 803 (1004)
.++ +.|.- -.|..-..++.-.+.|++|.+.|++..+. ..+.++-.. +.+|..-+++..-+ -
T Consensus 313 Al~-iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSkRk----d 374 (486)
T KOG0550|consen 313 ALK-IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSKRK----D 374 (486)
T ss_pred hhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhhhh----h
Confidence 876 34422 23333444556678899999999988653 222332222 23444444443322 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|-.+|+.-+...+.|......+.++...|+-..
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCc
Confidence 666677777778888888888888888887544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.9 Score=42.48 Aligned_cols=189 Identities=21% Similarity=0.199 Sum_probs=120.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHH-HHHhcCCHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKL-GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILIS-VFARHGYFQ 716 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~ 716 (1004)
.....+.+..+...+...... ........+..+...+...+..+.+.+.+..... ++ ...+..... .+...|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE 147 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH
Confidence 333444444444433333321 2223344444555555566666666666665543 11 122333333 678889999
Q ss_pred HHHHHHHHHhhccCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHH
Q 001852 717 KAIETFDEMLKYVKP----DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 717 ~A~~l~~~m~~~~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
+|...|++... ..| ....+......+...+..+++...+...... .+. ....+..+...+...|.+++|...
T Consensus 148 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 148 EALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 99999998866 444 2334444455567788899999988888753 222 356677788888888899999988
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 792 INKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 792 i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
+... ...|+ ...+..+...+...|+.+.+....++.++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8776 44554 456666666666667899999999999999997
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.095 Score=43.16 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKY---VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
.+++.+...|...|++++|++.|++.++. ..++ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677788888888888888888887754 3322 34666777777788888888887776653
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.97 E-value=7 Score=42.76 Aligned_cols=217 Identities=10% Similarity=0.029 Sum_probs=111.2
Q ss_pred hHHHHHHHH--HhCCCchhHHHHHHHHHHc--CCCC------------ChhhHHHHHHhhcCCCChhhHHHHHHHHHHhc
Q 001852 296 SWNSMISVY--SHSGLCDQSLKCFHWMRHV--GQEI------------NSTTFSTLLSACGSVDNLKWGRGIHGLAVKLA 359 (1004)
Q Consensus 296 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 359 (1004)
.|-.+..+. -+.+.+..|++.+..-... +-.| |-.-=+.....+...|.+.+|+.++..++..=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444333 2456677777766655433 2221 11122344556678888889988888877654
Q ss_pred C----CCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHH
Q 001852 360 L----NSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTS 435 (1004)
Q Consensus 360 ~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 435 (1004)
+ .-+..+|+.++-++++.=-++ +-+.+...=..-|--||..|.+.=..-++ -.=..+.|...-+..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFST 228 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHH
Confidence 3 367888888877777642211 11222222233455666666543111111 001122343333333
Q ss_pred HHHhhcC--CCChHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHccCChHHHHHHHhcCC--------CCCeechhhhhH
Q 001852 436 ALAACSD--PGFVVQGKIIHALVITMGLHDNL-IVGNALVSMYAKSGMMSEAKQVFRIMP--------KRDTVTWNALIG 504 (1004)
Q Consensus 436 ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~ 504 (1004)
++....- ...+.--.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+. +.-+.++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333221 11222333444444444455543 344455555554 4555544444332 223456777888
Q ss_pred HhhhCCChhHHHHHHHHHHh
Q 001852 505 GHSEKEEPDKALKAYKRMRE 524 (1004)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~ 524 (1004)
...+.++..+|-+.+.-+..
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHh
Confidence 88888888888877776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.95 Score=45.35 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC--CChhHH--------HHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSW--------NILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+.-+|.+.-.+.++.+.++..+| +.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 56666666666666666666655443 223334 56677777788888999999999987434 77778888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcC----CCCCCchHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHH-Hh
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFG----VPAGIEHCVCIIDLLGRSGRLAEAETFINKMPV-TPNDLVWRSLLASS-KI 813 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~-~p~~~~~~~ll~~~-~~ 813 (1004)
.+.-.+.|+++.|..+|++..+..+ +.-....-..+..++.-+.++.+|..++.+.+. .|...++..==+-| .-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999997765432 222222222344456667778888888877753 33333332222223 33
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.|+...|.+..+.+++..|...-.-.++-|
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 488888999999998888876554433333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.95 E-value=8.7 Score=44.96 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCC
Q 001852 466 IVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEE 511 (1004)
Q Consensus 466 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 511 (1004)
.++...|+.+.-.|++++|-...-.|...+..-|---+.-+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 3445566666666666666666666655555555555444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.63 Score=46.79 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHH
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLL 779 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l 779 (1004)
.....+...|++.+|++.|+++... ..| -......++.++...|++++|...|++..+.|+-.|.. ..+-.++..+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3445556667777777777777765 112 12344456667777777777777777777666655543 1111111111
Q ss_pred H-----------hcCChHHHHHHHHh----CCCCCCHH--------HHH-------HHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 780 G-----------RSGRLAEAETFINK----MPVTPNDL--------VWR-------SLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 780 ~-----------r~g~~~eA~~~i~~----m~~~p~~~--------~~~-------~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
. ..+...+|...++. -|-.|-.. +.. ....-+...|+...|..-++.+++
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 11223344444333 24333211 111 123346678899999999999999
Q ss_pred cCCCCCC---CeehhhhHhhhcCCchHHH
Q 001852 830 LDPSDDS---SYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 830 l~p~~~~---~~~~l~~~y~~~g~~~~a~ 855 (1004)
.-|+.+. +...|...|.+.|..+.+.
T Consensus 170 ~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 170 NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9888655 4567777888888877443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.034 Score=45.88 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
.++..+...+...|+.+.|+..+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777777664
|
... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.048 Score=36.35 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.069 Score=35.49 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.18 Score=45.70 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHh--------------HhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---
Q 001852 733 HVTFVSLLSACNHGGLVDKGLQYYNTM--------------TTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--- 795 (1004)
Q Consensus 733 ~~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--- 795 (1004)
..++..++.++++.|+++....+.++. .....+.|+.....+++..|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344445555555555555555444432 112244566666777777777777777777776553
Q ss_pred -CCCCCHHHHHHHHHHHHhcC
Q 001852 796 -PVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 796 -~~~p~~~~~~~ll~~~~~~g 815 (1004)
|++-+..+|..|+.-+...-
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 55545667777777665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=4.4 Score=41.13 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHH
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCII 776 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 776 (1004)
..|-.-+..-.+.|++++|.+.|+.+..+ ..| ...+-..++.|+-+.|++++|+..+++..+.|+-.|+++- ..-+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY-~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY-AYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH-HHHH
Confidence 34444455566788899999999988876 344 4567777788888889999999999888888888888742 1111
Q ss_pred HHHHh------cC-C-------hHHHHHHHHhCC---CCCCHHH-----H-------HHHHHHHHhcCCHHHHHHHHHHH
Q 001852 777 DLLGR------SG-R-------LAEAETFINKMP---VTPNDLV-----W-------RSLLASSKIHGNVELAKKAAEHL 827 (1004)
Q Consensus 777 ~~l~r------~g-~-------~~eA~~~i~~m~---~~p~~~~-----~-------~~ll~~~~~~g~~e~a~~~~~~~ 827 (1004)
.++.. .. + +.+..+++.+-| ..||+.. - .+...-|.++|....|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 22211 11 1 223334455555 3444321 1 22334467889999999999999
Q ss_pred HhcCCCCCCC---eehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 828 FELDPSDDSS---YVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 828 ~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
++--|+.+.. +..|-+.|...|..++|.+..+.+...
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9987776654 556667899999999999999988764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.18 Score=47.66 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=70.3
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001852 742 ACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 742 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
.....|+.+++...++.+...|.=++=..... ...+....+.+.++- ..++..++..+...|+.+.|.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 34556777777777777766542221111000 111222222232221 235667777888999999999
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+++++.++|-+...|..|..+|...|+..+|.++++.++
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877664
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.69 E-value=6.8 Score=45.56 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=168.2
Q ss_pred HcCCCCChhhHHH-----HHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCC---CHHHHHHHHhhCCC-
Q 001852 221 REGVCCNENTFAA-----VITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG---SVKEARCIFDSMHV- 291 (1004)
Q Consensus 221 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~- 291 (1004)
+-|++.+..-|.. +|..+...+.+..|.++-..+...-..- ..++.....-+.+.. +.+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466665554443 3444555556666666555442211111 345555555555442 33344444445554
Q ss_pred -CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCC----CCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHH
Q 001852 292 -RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ----EINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWV 366 (1004)
Q Consensus 292 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 366 (1004)
.+.++|..+.+-.-+.|+.+-|..+++.=...+- -.+-.-+...|.-+...|+.+...+++-++...-. ...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HHH
Confidence 4677788888777788888888877764222211 11223344555556666666666666555543310 011
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCCC-CCcchHHHHHHHHHcCCCHHHHHHHHHHh------hhcCCcCCHhhHHHHHHh
Q 001852 367 CNTLLAMYSEAGRSEDAKFVFQEMSE-RDSVSWNSLVASHVQDEKYIDALKIFSNM------LQKQRLVNYVTFTSALAA 439 (1004)
Q Consensus 367 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a 439 (1004)
+...+ .+...|..++....+ .|..+ +-..|-+..+. +++.-|..- ...|..|+..+ .-.+
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 11111 122223333332221 11110 11111111111 111111100 01122233222 2223
Q ss_pred hcCCCChHHHH----------HHHHHHH-HhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 440 CSDPGFVVQGK----------IIHALVI-TMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 440 ~~~~~~~~~a~----------~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
+++........ ++...+. +.|..-...+.+--+.-+..-|+..+|.++-.+.+-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 33332211111 1111111 123223333444455556677899999999999988898888888899999
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHH
Q 001852 509 KEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNY 588 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 588 (1004)
.+++++-.++-+.+.. ..-| -..+..+.+.|+.++|.+
T Consensus 728 ~~kweeLekfAkskks------PIGy------------------------------------~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKKS------PIGY------------------------------------LPFVEACLKQGNKDEAKK 765 (829)
T ss_pred hhhHHHHHHHHhccCC------CCCc------------------------------------hhHHHHHHhcccHHHHhh
Confidence 9998887776665542 1222 234455566677778877
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 001852 589 IFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVK 623 (1004)
Q Consensus 589 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 623 (1004)
.+.+...-. -...+|.+.|++.+|.++--+
T Consensus 766 Yiprv~~l~-----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 766 YIPRVGGLQ-----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhccCChH-----HHHHHHHHhccHHHHHHHHHH
Confidence 776665421 456677777777777765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.22 Score=54.65 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 697 RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 697 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
.+...|+.+..+|...|++++|+..|++.++ +.||. .+|..+..+|.+.|++++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999998 57764 35899999999999999999999998764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.49 Score=48.89 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=79.5
Q ss_pred CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHh-cC--ChHHHHHHHHhC-CCCCCHH-H
Q 001852 730 KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGR-SG--RLAEAETFINKM-PVTPNDL-V 803 (1004)
Q Consensus 730 ~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g--~~~eA~~~i~~m-~~~p~~~-~ 803 (1004)
.| |...|..|..+|...|+.+.|...|....+.- .++++.+..+...|.. +| ...+|.++++++ ...|+.. .
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 78899999999999999999999999886532 2344666667766543 23 346788899887 5677655 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
..-|.-.+...|++..|...++.++++.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 444555688899999999999999999887765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=58.30 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHhcCCHHHHHHHHH--HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 708 VFARHGYFQKAIETFD--EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 708 ~~~~~g~~~~A~~l~~--~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.....|+++++.++.+ ++...++ ..-...++.-+.+.|..+.|+++-..-..+ -++-...|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 3346788888877775 2222233 333667777788899999999876554433 3677789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 786 AEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
+.|.+..++.+ +...|..|......+||++.|+.+++++- -+..|+-+|...|+-+.-.++-+.-..+
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999987764 77899999999999999999999999863 4677888999999987776666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.64 Score=51.25 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhhc--cCCCH-hHHHHHHHHHhc---------cCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHH
Q 001852 714 YFQKAIETFDEMLKY--VKPDH-VTFVSLLSACNH---------GGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLG 780 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~--~~pd~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 780 (1004)
..+.|+.+|.+.... ..|+- ..|..+...+.. .....+|.++-++..+ +.| |......+..+++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 346788888888832 56643 344433332211 2234566666666553 333 4455555666667
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH--hhhcCCchHHHH
Q 001852 781 RSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV--CAATGRWDDVEN 856 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~ 856 (1004)
-.|+++.|..++++. .+.||. .+|......+.-.|+.+.|.+.++++++++|...++-++--++ |.. ...++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 777899999888887 577874 4787777788888999999999999999999887765544444 544 44566666
Q ss_pred HHH
Q 001852 857 VRR 859 (1004)
Q Consensus 857 ~~~ 859 (1004)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.22 Score=52.70 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHH---hHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-----CCCC---CH
Q 001852 734 VTFVSLLSACNHGGLVDKGLQYYNT---MTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-----PVTP---ND 801 (1004)
Q Consensus 734 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-----~~~p---~~ 801 (1004)
..|..|.+.|.-.|++++|+..-+. +.++||..... ..|+.+.+++.=.|+++.|.+.++.. .+.. .+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666667778888766543 23345554432 55666777777778888887776653 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CCCCCeehhhhHhhhcCCchHHHHH
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELD----P--SDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~----p--~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
..-.+|.+.|....+++.|+....+-+.+. . ...-++-.|+|.|...|.-++|...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345677777777777888877776655532 1 1223566778888888887777653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.25 Score=43.62 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----CCeehhhhHhhhcCCc
Q 001852 778 LLGRSGRLAEAETFINKM-PVT-PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD----SSYVLYSNVCAATGRW 851 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m-~~~-p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~ 851 (1004)
++..+|++++|++.|.+. .+- .++++|+.-..+++.+|+.+.|..-.++++++.-+.. ..|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666555543 222 2345566666666666666666666666666533221 1455666666666666
Q ss_pred hHHHHHHHH
Q 001852 852 DDVENVRRQ 860 (1004)
Q Consensus 852 ~~a~~~~~~ 860 (1004)
++|..=.+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 666554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=6.6 Score=39.42 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=9.2
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 001852 607 ANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 607 ~~~~~g~~~~A~~l~~~m~~ 626 (1004)
.+.+.|++++|++.|+++..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33444555555555555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.69 E-value=3 Score=46.28 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCC--CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKP--DHVTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+..+..+.|+.+||++.|++|.+..++ +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555667777777777777654333 1223445666666666666666666554
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.66 E-value=6 Score=48.48 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=88.5
Q ss_pred CChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh
Q 001852 479 GMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI 558 (1004)
Q Consensus 479 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~ 558 (1004)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+..++..+..+++.. +
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h-------------L 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH-------------L 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH-------------H
Confidence 45566665555544 223444444444566666666553 56666666655555433 1
Q ss_pred hhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhh--H
Q 001852 559 VLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFS--L 636 (1004)
Q Consensus 559 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~ 636 (1004)
.+ ...++--.-+|.++|+.++|.+ +|...|++.+|+.+-.+|.. .-|... -
T Consensus 950 ~~------~~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 RE------ELMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HH------hccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 11 1122334457888888888855 45566778888877777642 112221 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCCh
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPR 699 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 699 (1004)
..+.+-+...+..-+|-++...-.. . ...-+..|++.-.+++|.++-......|.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 3444555555555555444433221 1 23346677888888888877666554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.39 Score=45.35 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCCch
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTT----EFGVPAGIEH 771 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 771 (1004)
....++..+...|++++|+.+.+++....+-|...+..++.++...|+..+|++.|+++.+ +.|++|+...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4456777788899999999999999985333888999999999999999999999988753 5688887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.8 Score=51.67 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=64.5
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.++..++|+++.|.+.-++.. +...|..|.......|+.+-|++.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHH
Confidence 455667888888888887766 566899999988899999999988888764 5556666666777655554
Q ss_pred HHHHhHhhcCCCCCC--------chHHHHHHHHHhcCChHHHHHHH
Q 001852 755 YYNTMTTEFGVPAGI--------EHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~--------~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
+-+..... |. .+. .-+..-+++|.+.|++.+|.-+-
T Consensus 395 l~~~a~~~-~~-~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A 438 (443)
T PF04053_consen 395 LAKIAEER-GD-INIAFQAALLLGDVEECVDLLIETGRLPEAALFA 438 (443)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHc-cC-HHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHH
Confidence 44444321 11 010 00112346666666666665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.4 Score=38.49 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=71.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHH
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQ 716 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 716 (1004)
..++..+...+.......+++.+.+.+. .++...+.++.+|++.+ .+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--------------------------------HH
Confidence 3444555555555666666666555542 45556666666665432 12
Q ss_pred HHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc-CChHHHHHHHHhC
Q 001852 717 KAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS-GRLAEAETFINKM 795 (1004)
Q Consensus 717 ~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~i~~m 795 (1004)
+.++.++. .++......++..|...+.++++..++..+.. |...++++... ++.+.|.+++.+-
T Consensus 58 ~ll~~l~~-----~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~ 122 (140)
T smart00299 58 KEIERLDN-----KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ 122 (140)
T ss_pred HHHHHHHh-----ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC
Confidence 23333331 22333344577778888888888887777632 23344444444 7788888888762
Q ss_pred CCCCCHHHHHHHHHHHH
Q 001852 796 PVTPNDLVWRSLLASSK 812 (1004)
Q Consensus 796 ~~~p~~~~~~~ll~~~~ 812 (1004)
.++..|..++..|.
T Consensus 123 ---~~~~lw~~~~~~~l 136 (140)
T smart00299 123 ---NNPELWAEVLKALL 136 (140)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 35567877776654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.4 Score=39.29 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 710 ARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
...|..++..++..+.... .+..-++-++.--..+-+-+--.+.+++.-+.|.+.|-. ....+|.+|.+.|...|=.
T Consensus 13 ildG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHHH
Confidence 3457788888888887764 122222222222222223344455556655545444432 2334667777777655422
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCc
Q 001852 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIK 867 (1004)
Q Consensus 790 ~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 867 (1004)
.--|.+...+|+-|.-.+++..+++.+..+|+..+-+++.|.+.|...++.++.++.-++|++
T Consensus 90 ---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 ---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 223556678888999999999998877778888999999999999999999988888888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.6 Score=47.61 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPD---HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCII 776 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv 776 (1004)
.|+.-+.. .+.|++.+|...|..-++..+-+ ...+.-|+.++...|++++|..+|..+.++|+-.|.. +.+--++
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655444 46777999999999999862222 1245558899999999999999999999999888876 8888888
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 001852 777 DLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m 795 (1004)
..+++.|+.++|...+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 9999999999998888776
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.57 Score=51.62 Aligned_cols=115 Identities=7% Similarity=0.040 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHh---------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 748 LVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGR---------SGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 748 ~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r---------~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
..++|+.+|.+....-.++|+- ..|.++..++.. .....+|.++.++. .+.|+ +.+...+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3578888999988555777764 667666654431 22345666666665 45544 556666766677788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH-Hh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ-MG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~-m~ 862 (1004)
+.+.|...++++++++|+.+..+...+++..-.|+.++|.+--+. ++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999885443 44
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.2 Score=45.93 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcC
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLA---SSKIHG 815 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~---~~~~~g 815 (1004)
-.......|+..+|...|+..... .+-+.+.-..|+++|...|+.++|..++..+|.+-....|..|-. ......
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344556677888888888877653 222346666778888888888888888888876655444433211 111112
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH-HHHHHh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN-VRRQMG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~ 862 (1004)
+.... ..+++-+.-+|+|...-..|+..|...|+.++|.+ +...|+
T Consensus 218 ~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 218 ATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred cCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22211 23445567799999999999999999999999977 455554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.03 E-value=4 Score=37.61 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDL 778 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 778 (1004)
+-.-.....+.|++++|.+.|+.+... ..| ....-..++.++...|++++|...+++.++.+.-.|++. |......
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG 91 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence 333445556788999999999999887 333 445677788899999999999999999988777777653 3332222
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 779 LGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
|+- ++.....+..++ ..=+-.+.+..|...++++++.-|++.
T Consensus 92 L~~---~~~~~~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 92 LSY---YEQDEGSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHH---HHHhhhHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221 111122222222 111223446688888999999888753
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.87 Score=50.23 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=115.9
Q ss_pred hcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhh----cCCCCCCchHHHHHHHHHhcCChH
Q 001852 711 RHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTE----FGVPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
+..+.+.-+++-++.++ +.||-.+-..+ -|--.+.-+.|+.++|++..+. ++......| .|.
T Consensus 180 RERnp~aRIkaA~eALe-i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~----------~g~-- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE-INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQH----------HGH-- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH-hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHHhhchhhhhhc----------ccc--
Confidence 44566677777777777 57766554433 3444566688888888887652 111110010 111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 787 EAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS--DDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 787 eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
..+.+..-...|-..+=..|.-.+++.|+.++|++.++.+++..|. +-+.+..|.+.+-..+++.|+..+..+-.+-
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111123333444556666777888888888888888877664 3446777777888888888887776665443
Q ss_pred CCccCCcccEEEeCCeEEEE-ecCCCCCCC-------hHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhh-hh
Q 001852 865 KIKKKPACSWVKSKDGVNSF-GMGDHSHPD-------TEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNL-WN 935 (1004)
Q Consensus 865 ~~~k~~g~s~i~~~~~~~~f-~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 935 (1004)
...|....+|-.. +-.| .+||+..|+ +......++-+.+-++..-+||.==.-+-.+.- --|+++ ..
T Consensus 325 ~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil-PPehilkrG 400 (539)
T PF04184_consen 325 SLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL-PPEHILKRG 400 (539)
T ss_pred cCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC-ChHHhcCCC
Confidence 3333332222110 0001 124443333 223444667777777777777741100011100 012232 23
Q ss_pred hHHHHHHHHhhc
Q 001852 936 HSERLALAFGLI 947 (1004)
Q Consensus 936 hse~la~~~~~~ 947 (1004)
-||-+|.||--+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 588888877654
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=5.6 Score=40.43 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHH--HHHHHHHHH
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM----PVTPNDL--VWRSLLASS 811 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m----~~~p~~~--~~~~ll~~~ 811 (1004)
-+..-...|++++|.+.|+.+...|...|-. ..-.-++-++-+.|++++|...+++. |..||.. .|.-.+.-+
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 4444567899999999999999988777754 45555667788999999999877664 8888764 333333322
Q ss_pred Hh----cCC---HHHHHHHHHHHHhcCCCCC-----------------CCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 812 KI----HGN---VELAKKAAEHLFELDPSDD-----------------SSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 812 ~~----~g~---~e~a~~~~~~~~~l~p~~~-----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.. .+| ...|...++.+++--|+.. +.-...++.|.+.|.|..|..=.+.|.+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 22 123 4556666777777888752 2233456789999999998876555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.5 Score=47.28 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=93.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.+.|.+.|++..|...|++....+. + ...-..++...... .....+..+.-++.+.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~-~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE-Y-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh-c-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 4567888999999999998776311 0 00001122221111 1122344566677788888
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH-HHHHHHHh
Q 001852 786 AEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV-ENVRRQMG 862 (1004)
Q Consensus 786 ~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 862 (1004)
.+|++..++. ...|+. -..--=..+|...|+++.|+..++++++++|+|-.+...|+-+-.+..+..+. .++++.|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887776 455543 35556677888899999999999999999999988888888887777766665 66888886
Q ss_pred h
Q 001852 863 W 863 (1004)
Q Consensus 863 ~ 863 (1004)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.1 Score=39.77 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
..+.+..|+.+.|++.|.+.+...+.+...|+.-..++.-.|+.++|++-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 346677888888888888888754447788888888888888888888888877664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.1 Score=40.77 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=42.8
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 777 (1004)
..|+..+..+++.+++..|++..|+++.+...+.|+++-....+..|..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6788999999999999999999999999999999998777777776654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.16 E-value=4.4 Score=43.44 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCC-------CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cC-----CCHh
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPV-------DR--PRLSWNILISVFARHGYFQKAIETFDEMLKY-VK-----PDHV 734 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~-----pd~~ 734 (1004)
.|..|.+.|.-.|+++.|+..-+.-. .+ .-.++..+..++.-.|+++.|.+.|+.-... +. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455556666677777665543211 11 1235566777777777777777777765533 11 1223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIH 814 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~ 814 (1004)
...+|.++|--...+++|+.++.+-... |.++=+.. -....+.+|..++...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaI-------------------------AqeL~Dri---Ge~RacwSLgna~~al 328 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAI-------------------------AQELEDRI---GELRACWSLGNAFNAL 328 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHhh---hhHHHHHHHHHHHHhh
Confidence 4445666666666677777766543210 11111110 1123455666666666
Q ss_pred CCHHHHHHHHHHHHhc--CCCC----CCCeehhhhHhhhcCC
Q 001852 815 GNVELAKKAAEHLFEL--DPSD----DSSYVLYSNVCAATGR 850 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~l--~p~~----~~~~~~l~~~y~~~g~ 850 (1004)
|+-+.|...+++.+++ +-.| ....+.|+++-...|.
T Consensus 329 g~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 7777776666666653 1122 2234455555444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.11 E-value=11 Score=39.96 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=58.1
Q ss_pred HHcCChhhHHHHHhcCCCC----C--------HhHHHHHHHHHHhcCChHHHHHHHHHhhhc--------CCCCCh----
Q 001852 578 AKCGDLNSSNYIFEGLAEK----N--------SVTWNAMIAANALHGQGEEVLKLLVKMRHT--------GVYFDR---- 633 (1004)
Q Consensus 578 ~k~g~~~~A~~~f~~~~~~----~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~---- 633 (1004)
.+.|+.+.|..++.+.... + .+.||.-.+.+.+..++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3567777777777665431 1 234554444444444888887777765432 122222
Q ss_pred -hhHHHHHHHHhhhhh---HHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC
Q 001852 634 -FSLSEGLAAAAKLAV---LEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV 695 (1004)
Q Consensus 634 -~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 695 (1004)
.++..+..++-..+. .+.+..+.+.+.+.. +..+.++---+....+.++.+++.+++.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 233344444444433 333444444443322 2223333333444445566666666666554
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.1 Score=51.43 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHhhccCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhHhhcCCCCCCch--HHHHHHHHHhcCChHHHH
Q 001852 713 GYFQKAIETFDEMLKYVKPDHVTFVSL-LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH--CVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 713 g~~~~A~~l~~~m~~~~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y~~lv~~l~r~g~~~eA~ 789 (1004)
.+.+.|.++++++.+. -|+...|... ...+...|++++|++.|+.+...-.--|...| |--+...+.-.+++++|.
T Consensus 247 ~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4566677777777764 5555544432 24455667777777777765431111222322 222445566677777777
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHH-hcCCH-------HHHHHHHHHHHhcC
Q 001852 790 TFINKMPV--TPNDLVWRSLLASSK-IHGNV-------ELAKKAAEHLFELD 831 (1004)
Q Consensus 790 ~~i~~m~~--~p~~~~~~~ll~~~~-~~g~~-------e~a~~~~~~~~~l~ 831 (1004)
+.+..+.- .-...+|.-+.++|. ..|+. +.|...++++-.+-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 77766632 222334444444443 34666 55555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.91 E-value=22 Score=39.00 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=135.7
Q ss_pred cCChhhHhhhcCCCCC----CChhHHHHHHHHHH-hcCCHHHHHHHHHHHhhccCCC----HhHHHHHHHHHhccCCHHH
Q 001852 681 CGEIGDVLRIAPQPVD----RPRLSWNILISVFA-RHGYFQKAIETFDEMLKYVKPD----HVTFVSLLSACNHGGLVDK 751 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~pd----~~t~~~ll~a~~~~g~~~~ 751 (1004)
.|+.++|.+.+..+.. +....+-+|+.+-. ...+..+|+++|++..-. -|- +....--+......|+.++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl-aPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL-APGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh-CCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5888888888888764 33456667776554 456899999999998763 453 2344444556789999999
Q ss_pred HHHHHHHhHhhcCCCCCCchH-HHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 752 GLQYYNTMTTEFGVPAGIEHC-VCIIDLLGRSG---RLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHL 827 (1004)
Q Consensus 752 a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~g---~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~ 827 (1004)
+..+-.+..+.|...|-...+ .-++.++.+.+ +.+.-.+++..|+-.-...+|..+...-.+.|+.+.|..+.+++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999988888888888866433 33445554443 23333344444432222448888888888999999999999999
Q ss_pred HhcCCCCCCCeehhhhHhhhcCC--chHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 001852 828 FELDPSDDSSYVLYSNVCAATGR--WDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELK 905 (1004)
Q Consensus 828 ~~l~p~~~~~~~~l~~~y~~~g~--~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 905 (1004)
+.+.+ ..+.-...+++|...-+ .+++....+.+..- ..++.+|.-..+.+.-..+-
T Consensus 284 ~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I---------------------~~~~L~~~Dr~Ll~AA~~va 341 (421)
T PRK12798 284 LKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI---------------------DRDKLSERDRALLEAARSVA 341 (421)
T ss_pred HHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC---------------------ChhhCChhhHHHHHHHHHHH
Confidence 99984 45556677788876543 22344444444321 12345566666666666666
Q ss_pred HHHHHc
Q 001852 906 KMIKEA 911 (1004)
Q Consensus 906 ~~~~~~ 911 (1004)
.++++.
T Consensus 342 ~~V~~~ 347 (421)
T PRK12798 342 RQVRRA 347 (421)
T ss_pred HHHhcC
Confidence 666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.64 Score=42.67 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=45.0
Q ss_pred HhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 780 GRSGRLAEAETFINKM----PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m----~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
.+.|++++|.+.++.+ |..|-. .+-..|+.++...|+++.|...+++.++|.|.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3567777777777665 444432 356668889999999999999999999999998873
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.90 E-value=17 Score=44.91 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=51.6
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH--HHHHHHHHhccCC
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT--FVSLLSACNHGGL 748 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t--~~~ll~a~~~~g~ 748 (1004)
|.+..+.+...+.+++|.-.|+...+- .--+.+|...|++++|+.+..++.. .-|.+. -..|.+-+...|+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHccc
Confidence 333444444455555555444443221 1123445555555555555555432 112222 1234555555666
Q ss_pred HHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 749 VDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
.-+|-++......+ +.--+.+|+++..+++|.......
T Consensus 1015 h~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555554443322 223455666666666666665443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.68 E-value=18 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHH
Q 001852 366 VCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYI 412 (1004)
Q Consensus 366 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 412 (1004)
++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666666666666666666666666666665555555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.51 E-value=25 Score=38.68 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=51.9
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 789 ETFINKMPVTP----NDLVWRSLLAS--SKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 789 ~~~i~~m~~~p----~~~~~~~ll~~--~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
++++++..+.| +..+-+-|..| ...+|++.++.-...=+.+..| .+.+|.++|-......+++||-...+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45555554443 23355666666 4678888888888888888888 777888888888888888888877664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.6 Score=45.86 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHh---hcCCCCCCchH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKY--VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTT---EFGVPAGIEHC 772 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~y 772 (1004)
.-+|..++.-.+.++++++.|+...+- ...| -..+.+|.+.+....++++|..+.....+ .+++.-...-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344667777778899999999998865 2223 24788999999999999999988776533 34544433334
Q ss_pred HH-----HHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 773 VC-----IIDLLGRSGRLAEAETFINKM-------PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 773 ~~-----lv~~l~r~g~~~eA~~~i~~m-------~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
-+ |.-.|...|++-+|.+.-++. ...|- ......+...|+..|+.|.|..-||.+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 44 444566778777777766553 22222 235677888899999999999999998765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=3.6 Score=38.84 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=53.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChH
Q 001852 708 VFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 708 ~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
-+-+.|++++|..+|.-+... .| |..-|.+|...|-..|.+++|+..|.....--.-.|.+..| +..+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~--agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF--TGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch--HHHHHHHhCCHH
Confidence 344667777777777776653 44 44444555555566677777777777654432334444333 356666677777
Q ss_pred HHHHHHHhCCCCCC
Q 001852 787 EAETFINKMPVTPN 800 (1004)
Q Consensus 787 eA~~~i~~m~~~p~ 800 (1004)
+|++-++.....|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77776665533443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.36 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..+...+...|+.+.|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367778888899999999999999999999953
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.06 E-value=4.6 Score=41.78 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCC
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 784 (1004)
........|+..+|..+|.......+-+...-..+..++...|++++|..++..+-.+... ........-++++.++..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhc
Confidence 3445678899999999999999863335556667888999999999999999987432110 011112335678888888
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCCCeehhhhHhhhcCCchHH-HHHHHH
Q 001852 785 LAEAETFINKMPVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFEL--DPSDDSSYVLYSNVCAATGRWDDV-ENVRRQ 860 (1004)
Q Consensus 785 ~~eA~~~i~~m~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 860 (1004)
..+...+.....-.|+ ...--.|...+...|+.|.|..-+=.++.. .-+|...--.|-.++..-|.-+.+ .+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 8888888888766674 445666777788889998876655555553 234455555666666666644443 334444
Q ss_pred H
Q 001852 861 M 861 (1004)
Q Consensus 861 m 861 (1004)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.4 Score=44.56 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=71.5
Q ss_pred hhHHHhhccCC--CCchhHHHHHHHHHHhC-----CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh-------
Q 001852 179 NKARRVFEEMP--VRNVVSWTSLMVAYLDN-----GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTEND------- 244 (1004)
Q Consensus 179 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------- 244 (1004)
-..++.|...+ ++|-.+|-+++.-+... +..+-....++.|.+.|+.-|..+|..||..+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 68888898888887653 55666667788899999999999999999887543221
Q ss_pred ---------hhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCC
Q 001852 245 ---------LLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGS 278 (1004)
Q Consensus 245 ---------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 278 (1004)
.-+..++++|..+|+.||..+-..|+++|++.+.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2255667777777777777777777777766553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.78 E-value=20 Score=38.11 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=116.2
Q ss_pred HhHHhhHHHHcCChhhHHHHH-------hcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhh-cCCCCCh---hhH
Q 001852 570 QNSLITMYAKCGDLNSSNYIF-------EGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRH-TGVYFDR---FSL 636 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~---~t~ 636 (1004)
+..+.++.++.|.+++++..- .+..+. -..+|-.+..++.+.-++.+++.+-+--.. .|..|.. ...
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 445556666777766654432 111111 134566666666666666666665443322 2333421 222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCC-----CCChhHHhHHHhhHHhcCChhhHhhhcCCC-------CCCChh----
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGF-----DLDPFVTNAAMDMYGKCGEIGDVLRIAPQP-------VDRPRL---- 700 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~-------~~~~~~---- 700 (1004)
.++-.|....+.++.+.+.|+...+..- -....++.+|...|++..++++|.-...+. .-.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3344566777788999888887665321 224567889999999999999876554433 223432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHH----HHHHHHhccCCHHHHHHHHHHh
Q 001852 701 --SWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFV----SLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 701 --~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~----~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+.--|..++...|....|.+..++..+. ..-|..++. .+.+.|...|+.|.|+.-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2234567888889888888888887765 444655443 5667778888888887776655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.45 E-value=3 Score=43.43 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=86.2
Q ss_pred cCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHH----HHHHhccCCHHHHH
Q 001852 681 CGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSL----LSACNHGGLVDKGL 753 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~l----l~a~~~~g~~~~a~ 753 (1004)
.|+..+|...++++.+ .|..+|+--=.+|.-.|+-+.-...++++...-.||...|..+ .-++...|.+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4666666666666553 4667777777777777777777777777766545555433322 22344677777777
Q ss_pred HHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh-cCCHHHHHHHH
Q 001852 754 QYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN-------DLVWRSLLASSKI-HGNVELAKKAA 824 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~-------~~~~~~ll~~~~~-~g~~e~a~~~~ 824 (1004)
+.-++..+ ++| +.-.--.....+.-.|++.|+.+|..+-...-+ ..-|.+- .|.+ .+.+|.|+.++
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A--l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA--LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH--HhhhcccchhHHHHHH
Confidence 76666543 333 222223455666677788888887766532111 1122221 1333 35777777777
Q ss_pred HHHHh--cCCCCCC
Q 001852 825 EHLFE--LDPSDDS 836 (1004)
Q Consensus 825 ~~~~~--l~p~~~~ 836 (1004)
++-+- ++.+|+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 65433 4555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.9 Score=42.80 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH-HHHHHHH
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM----PVTPND-LVWRSLL 808 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~~p~~-~~~~~ll 808 (1004)
.|..- -.+...|++.+|...|..-++.|.-.+ ....+--|...+.+.|++++|...+..+ |-.|-+ ....-|.
T Consensus 144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34433 345567889999999999998775444 2345555788888899999888877655 544443 3555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 809 ASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 809 ~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
-+....|+.+.|...++++++--|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6677788999999999999888887654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=89.93 E-value=9.1 Score=35.61 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHH
Q 001852 444 GFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRM 522 (1004)
Q Consensus 444 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (1004)
+.......++..+.+.+ ..+....+.++..|++.+ .++..+.+.. ..+......++..|.+.+.++++.-++.++
T Consensus 21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 34444444444444444 245667777888887653 3444455542 233344444666666667777777666665
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.32 Score=45.74 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred hhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 001852 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVK 623 (1004)
Q Consensus 548 ~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 623 (1004)
.....++...+.+.+-..+..+.+.|+.+|++.++.+...++++.... .-...++..|.+.|.+++|.-++.+
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 23 PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHH
Confidence 333334444444333334555666777777777666666666553222 2223334444444444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.7 Score=42.73 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=74.7
Q ss_pred hHHHHHhcCC--CCCcchHHHHHHHHHcC-----CCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCC-----------
Q 001852 382 DAKFVFQEMS--ERDSVSWNSLVASHVQD-----EKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDP----------- 443 (1004)
Q Consensus 382 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------- 443 (1004)
..++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||...-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456676666 67888888888877654 44555666778888899999999999999877553
Q ss_pred -----CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCCh
Q 001852 444 -----GFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 444 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 481 (1004)
..-+-+..++++|..+|+.||-.+-..|++.+.+.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23345677888888888888888888888888776653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.85 E-value=5.2 Score=46.00 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=34.2
Q ss_pred ChhhHhhhcCCCCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhc---cC-CCHhHHHHHHHHHhccCCHHHHHHH
Q 001852 683 EIGDVLRIAPQPVD--RPRLSWNILI-SVFARHGYFQKAIETFDEMLKY---VK-PDHVTFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~---~~-pd~~t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
..+.|.++++.+.. |+...|.-+- ..+...|+.++|++.|++.... .+ -....+.-+...+.-.++|++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34444444444443 4444333322 2233445555555555544321 11 1233333444444445555555555
Q ss_pred HHHhHh
Q 001852 756 YNTMTT 761 (1004)
Q Consensus 756 ~~~m~~ 761 (1004)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.85 Score=30.80 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
+|..|...|...|+.+.|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888888888888886654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.90 E-value=31 Score=38.03 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcc-CC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHhh-cCCCCCCchH
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYV-KP---DHVTFVSLLSACNHGGLVDKGLQYYNTMTTE-FGVPAGIEHC 772 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y 772 (1004)
...+|..++..+.++|+++.|...+.++.... .+ +......-+...-..|+-++|+..++...+. ..-.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777777788888888887777776531 11 2223333445556667777777777666552 1111011111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-C----CCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCCCeehh
Q 001852 773 VCIIDLLGRSGRLAEAETFINKMP-V----TPNDLVWRSLLASSKIH------GNVELAKKAAEHLFELDPSDDSSYVLY 841 (1004)
Q Consensus 773 ~~lv~~l~r~g~~~eA~~~i~~m~-~----~p~~~~~~~ll~~~~~~------g~~e~a~~~~~~~~~l~p~~~~~~~~l 841 (1004)
..+...+ +. .......-. . ..-..++..+..-+... ++.+.+...++++.+++|.....+..+
T Consensus 225 ~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGL-----LE-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhhcc-----cc-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1110000 00 000000000 0 00012343444444444 889999999999999999888877777
Q ss_pred hhHhh
Q 001852 842 SNVCA 846 (1004)
Q Consensus 842 ~~~y~ 846 (1004)
+..+.
T Consensus 299 a~~~~ 303 (352)
T PF02259_consen 299 ALFND 303 (352)
T ss_pred HHHHH
Confidence 77664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=6.5 Score=38.54 Aligned_cols=178 Identities=14% Similarity=0.080 Sum_probs=108.0
Q ss_pred HhcCChhhHhhhcCCCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHH
Q 001852 679 GKCGEIGDVLRIAPQPV--DRP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
-..|-..-|+-=|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+. .| ...++..-.-++--.|++.-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeeeecCchHhhHH
Confidence 33444455555555443 233 356787777788899999999999998884 55 55666666667778889998888
Q ss_pred HHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 755 YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
-|-..-+ -.|+-..-+...-+-.+.-+..+|..-+.+--..-|..-|+.-+-.+..-.=-+ +.+++++.+-..++
T Consensus 155 d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 7666543 344322222222233345566677754433223445556776665554322111 12233333322222
Q ss_pred -------CCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 835 -------DSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 835 -------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+|..|+..|...|..++|..+.|...
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3468888999999999999999998754
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.8 Score=30.80 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFV 737 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~ 737 (1004)
.|..+...|...|+.++|+++|++.++. .| |...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHH
Confidence 5677788888888888888888888884 55 333443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.67 E-value=2 Score=44.73 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
|..-..+-...|+.++|.+-+|.+++|+|++.. |-..|+......|+.-
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 333344445568899999999999999998533 4445554444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=6.8 Score=40.96 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=96.6
Q ss_pred hcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHh---CCCCChhHHhHHHhhHHhcCChhh
Q 001852 610 LHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKL---GFDLDPFVTNAAMDMYGKCGEIGD 686 (1004)
Q Consensus 610 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~k~g~~~~ 686 (1004)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-+..++.++.. +++...++...+.-.+..||-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777777777764 5556666666677788888877777777766543 333334444445555668899999
Q ss_pred HhhhcCCCCCCCh-hHH--HHHHHHHHhcCCHHHHHHHHHHHhhccC-CCH---hHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 687 VLRIAPQPVDRPR-LSW--NILISVFARHGYFQKAIETFDEMLKYVK-PDH---VTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 687 A~~~~~~~~~~~~-~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~-pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
|.+.-++..+-|. .+| .+....+-..|+.+++.+...+-...-+ .+. -.|-...--+...+.++.|+++|+.=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9998888776443 345 4566677788999999888776544311 110 11222333455668899999988854
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.40 E-value=0.19 Score=47.35 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=62.0
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHH
Q 001852 335 LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDA 414 (1004)
Q Consensus 335 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 414 (1004)
++..+.+.+..+....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5566677778888888888888877677888999999999999888888888884433 3345566666777777777
Q ss_pred HHHHHHhh
Q 001852 415 LKIFSNML 422 (1004)
Q Consensus 415 ~~l~~~m~ 422 (1004)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77666653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.04 E-value=12 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 001852 817 VELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~ 834 (1004)
.+.|...|++.++++|+-
T Consensus 242 ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 789999999999999764
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.74 E-value=4.7 Score=46.47 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh----------hhHHHHHHHHhhhhhHHHHHHHHHHHH-HhC-CCCC
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR----------FSLSEGLAAAAKLAVLEEGHQLHGLAT-KLG-FDLD 667 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g-~~~~ 667 (1004)
+-..|+-.|....+++..+++.+.++.. ||. +-|.-.|+-=-+-|+-+.|....--+. +.| +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4455666777788888888888877652 332 223333333334566666666544333 333 223
Q ss_pred hhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH---hHHHHHHHHHh
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH---VTFVSLLSACN 744 (1004)
Q Consensus 668 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~---~t~~~ll~a~~ 744 (1004)
||||-||++=+ .|- +-+.|-..+..+.|.+.|++.-+ +.|+. +.+..|+.|-.
T Consensus 279 --------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe-veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE-VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred --------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc-cCchhhccccHHHHHHHhh
Confidence 56777777532 111 12334455667788899998888 57754 34444444322
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAA 824 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~ 824 (1004)
+ .++...++-. + | ..|-.+++|.|.++.-.+..+- ..++.+-...+|...|.+++
T Consensus 335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHH
Confidence 2 1222222111 0 1 1245688999998876665431 34566777789999999999
Q ss_pred HHHHhcCCCC
Q 001852 825 EHLFELDPSD 834 (1004)
Q Consensus 825 ~~~~~l~p~~ 834 (1004)
++++++.|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999998853
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.67 E-value=8.3 Score=36.29 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 001852 741 SACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMP-VTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 741 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
+.-...++.+++..++..+. -+.|.. ++-.+-+.++.+.|++++|..+++++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33345556666666666664 344443 333344455666777777777777663 2344444566666666554444
Q ss_pred HHHHHHHHHHhcCC
Q 001852 819 LAKKAAEHLFELDP 832 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p 832 (1004)
.=...++.+++.+|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44555666666555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.1 Score=30.30 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677777777777777777777553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.1 Score=41.18 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
.|..-..+..+.+..+.|+...-+++++.|....+...-+.+|....++++|.+=++++.+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44455555666778888888888888888877777777778888888888888877776653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.29 E-value=92 Score=37.33 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.1
Q ss_pred HHhcCChHHHHHHHHhCCCCCC
Q 001852 779 LGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
+..+|++++|++.+++.++-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 4578999999999999988773
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.85 E-value=3.4 Score=42.98 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=58.7
Q ss_pred hHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCCCChhhHHH
Q 001852 568 YVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRH-----TGVYFDRFSLSE 638 (1004)
Q Consensus 568 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 638 (1004)
.+...++..+..+|+.+.+.+.+++.... |...|..||.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35577889999999999999999988654 778999999999999999999999999865 466666554433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.44 E-value=84 Score=36.18 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=127.9
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSA 742 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a 742 (1004)
+..+|..-++.-.+.|+.+.+.-.|++...| =...|--.+.-.-..|+.+-|-.+.....+- .+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888889999998888887654 2245655555555558888888777766655 34344554444556
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAE---TFINKM-PVTPNDLVWRSLLA-----SSK 812 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~---~~i~~m-~~~p~~~~~~~ll~-----~~~ 812 (1004)
+-+.|+.+.|..+++...+++ |+. +.-.--+....|.|.++.+. +++... +..-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 778899999999999999865 654 33333456778999999988 666554 33333322222211 134
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
+.++.+.|..++.++.+..|++-..|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999998777663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.2 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPD 732 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd 732 (1004)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE-LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH-HCcC
Confidence 566677777777777777777777766 3553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=5.3 Score=43.64 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=87.4
Q ss_pred hcCCHHHHHHH-HHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 711 RHGYFQKAIET-FDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 711 ~~g~~~~A~~l-~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
..|+...|-+- |.-+... -.|+.+...+. ..++.|.++.+...+..... -+.....+..|+..-+...|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 34666666554 4444443 55666655444 47899999999999887764 3445567778899989999999999
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCCeehhh
Q 001852 789 ETFINKM---PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD-DSSYVLYS 842 (1004)
Q Consensus 789 ~~~i~~m---~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~-~~~~~~l~ 842 (1004)
+.+...| .++ ++.+...-..+-+..|-++++...+++++.+.|.. ++.-..|+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 9998887 232 33333333444566788999999999999998764 44433443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.10 E-value=80 Score=34.88 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCh
Q 001852 260 HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD---TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINS 329 (1004)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 329 (1004)
+.|...|-.||.-|...|..++.++++++|..|- ...|..-|++-....++.....+|.+-....+..|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 4567788899999999999999999999998773 346888888888888888888888888777655444
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.94 E-value=42 Score=37.35 Aligned_cols=207 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhHhhhcCCCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCC--------HhHHHHHHHHHh
Q 001852 685 GDVLRIAPQPVDRP----------RLSWNILISVFARHGYFQKAIETFDEMLKY--VKPD--------HVTFVSLLSACN 744 (1004)
Q Consensus 685 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd--------~~t~~~ll~a~~ 744 (1004)
|+|+...++.++.| ......++..-...|+..+|++-...|.+- -.|. ...-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCCHHHHHHHHHHhHhhc-CCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHhc
Q 001852 745 HGGLVDKGLQYYNTMTTEF-GVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN--------DLVWRSLLASSKIH 814 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~-~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~--------~~~~~~ll~~~~~~ 814 (1004)
.-|.++.|...|....+.. .+......-..+.-.|-|.|+-++-.+.++.. |.... ..++...+--....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCeehhhhHhhhcCCchHHHH-HHHHHhhCCCccCCcccEEEeCCeEEEEecC
Q 001852 815 GNVELAKKAAEHLFE------LDPSDDSSYVLYSNVCAATGRWDDVEN-VRRQMGWNKIKKKPACSWVKSKDGVNSFGMG 887 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~ 887 (1004)
|++.+|+....+.++ +.--.+-..++|+++....|+..++.+ ||-.|.- -+|.|.
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql--AkKi~D---------------- 520 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL--AKKIPD---------------- 520 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH--HhcCCC----------------
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcC
Q 001852 888 DHSHPDTEHIYAKLEELKKMIKEAG 912 (1004)
Q Consensus 888 d~~h~~~~~i~~~l~~l~~~~~~~g 912 (1004)
||.---..+.++.|.....+.|
T Consensus 521 ---i~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 521 ---IPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred ---chHHHHHHHHHHHHHHHhCcch
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.82 E-value=24 Score=33.75 Aligned_cols=134 Identities=7% Similarity=0.032 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHH-HHHHHHHhc-CChhhHHHHHhcCC
Q 001852 314 LKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN-TLLAMYSEA-GRSEDAKFVFQEMS 391 (1004)
Q Consensus 314 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y~~~-g~~~~A~~~f~~m~ 391 (1004)
++.++.+.+.+++|+...+..++..+.+.|.+..- .+++..++-+|..... .|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34555666677778877888888888777765433 3334445444443333 232221110 00223333343333
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 001852 392 ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITM 459 (1004)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 459 (1004)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34666777888889999998888775321 2233345666666666665555555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=70 Score=33.91 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=35.4
Q ss_pred chhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001852 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643 (1004)
Q Consensus 566 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 643 (1004)
+..+...-+.+.++.|+....-.+.+.+...+ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33444455555555555332222333333323 223455666666664 566666666653 34555444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.35 E-value=2 Score=31.97 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 455788999999999999999999998744
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.70 E-value=50 Score=31.60 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN 429 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 429 (1004)
+...-+.+.++.++..++..+++.+.+.|++..-..+++ .++-||
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----------------------------------~~Vi~D 59 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----------------------------------YHVIPD 59 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----------------------------------hcccCC
Confidence 334444556777777777777777777766555554443 334444
Q ss_pred HhhHHHHHHhhcCCCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 430 YVTFTSALAACSDPGFVVQGKIIHALVITM-GLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 430 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
.......|-.... ....+.++=-.|.+. + ..+..++..+...|++-+|.++.+....-+......++.+-.+
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4433333322221 111222221111111 1 1245567778888999999999888765566666677777777
Q ss_pred CCChhHHHHHHHHHHhc
Q 001852 509 KEEPDKALKAYKRMREE 525 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~ 525 (1004)
.++...-..+|+-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77766655555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.27 E-value=71 Score=34.10 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhhhcCCCCChhhHHHHHHHHhh------hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhH
Q 001852 614 GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAK------LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDV 687 (1004)
Q Consensus 614 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 687 (1004)
+++.+.+++.|.+.|++-+..++.+....... ......++.++..|.+...-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34566778888888888888777664443322 1335566677777766543211
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHhcCC----HHHHHHHHHHHhhc-cC-CCHhHHHHHHHHHhccCC---HHHHHHHHHH
Q 001852 688 LRIAPQPVDRPRLSWNILISVFARHGY----FQKAIETFDEMLKY-VK-PDHVTFVSLLSACNHGGL---VDKGLQYYNT 758 (1004)
Q Consensus 688 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~-~~-pd~~t~~~ll~a~~~~g~---~~~a~~~~~~ 758 (1004)
.++...+.+|+.. ..++ .++++..|+.+.+. +. -|..-+.+-+-+++..-. +.+..++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1233334444333 1122 35677788888885 44 466555555555543222 4578888988
Q ss_pred hHhhcCCCCCCchHHHHHH
Q 001852 759 MTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 759 m~~~~~~~p~~~~y~~lv~ 777 (1004)
+.+. ++++...||..++-
T Consensus 208 l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHc-CCccccccccHHHH
Confidence 8875 99999999986653
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.17 E-value=1e+02 Score=34.07 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC
Q 001852 368 NTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ 425 (1004)
Q Consensus 368 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (1004)
..|+.-|.-.|++.+|.+...++.-| ..+.+-+++.+.-+.|+....+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777888889999999999887765 56778888888888888777777777766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 3e-08
Identities = 33/303 (10%), Positives = 72/303 (23%), Gaps = 25/303 (8%)
Query: 635 SLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRI---- 690
L+ L A L+ G ++ A ++ +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 691 ---APQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHG 746
+ +N ++ +AR G F++ + + + PD +++ + L
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM---PVTPNDLV 803
++ ++ G+ ++ R+ L P P +
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863
LL K L + + +E R
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKT--------------LQCLFEKQLHMELASRVCVV 319
Query: 864 NKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQD 923
+ K VK + L++ + E + L D
Sbjct: 320 SVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLD 379
Query: 924 TDE 926
E
Sbjct: 380 ERE 382
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 2e-07
Identities = 20/243 (8%), Positives = 60/243 (24%), Gaps = 21/243 (8%)
Query: 360 LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVS---WNSLVASHVQDEKYIDALK 416
L + + + F+ ++ R V + +A ++D
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPES 89
Query: 417 IFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYA 476
+ L L + + L A
Sbjct: 90 PWEEQL-----------ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 477 KSGMMSEAKQVFRIMPKR-------DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPM 529
+ + A + + + +NA++ G + + + + +++ G
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 530 NYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYI 589
+ +++A L + G + L++ + L + + +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 590 FEG 592
Sbjct: 259 KPT 261
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 7e-06
Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 8/134 (5%)
Query: 167 SLLHFYGTYGHINKARRVFEEM-------PVRNVVSWTSLMVAYLDNGSPIEVVDLYRYM 219
+ + A + + + + ++M+ + G+ E+V + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 220 RREGVCCNENTFAAVITSCGLTENDLLGYL-FLGHVIKFGFHYTVPVANSLISMFGNFGS 278
+ G+ + ++AA + G + D L + + G L+S
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 279 VKEARCIFDSMHVR 292
+K + + +
Sbjct: 252 LKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-07
Identities = 65/477 (13%), Positives = 138/477 (28%), Gaps = 174/477 (36%)
Query: 344 NLKWGRGI--HG--------LA--------VKLALNSNV-WV----CNT---LLAM---- 373
L+ + + G +A V+ ++ + W+ CN+ +L M
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 374 --------YSEAGRSEDAKFVFQEMSERDSVSW------NSL-VASHVQDEKYIDALKIF 418
S + S + K + N L V +VQ+ K +A +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 419 SNML---QKQRLVNYV---------------TFT-----SALAACSD------PGFVVQG 449
+L + +++ +++ T T S L D P +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REV 322
Query: 450 KIIHALVITM---GLHDNLIVGNAL--VSMYAKSGMMS---------EAKQVFR---IMP 492
+ +++ + D L + V+ + ++ E +++F + P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 493 KRDT--------VTWNALIGGHSEKEEPDKALK--AYKRMREEGTPMNYITFANVLGACL 542
+ W + K + + + E+ + I+
Sbjct: 383 P-SAHIPTILLSLIWFDV-----IKSDVMVVVNKLHKYSLVEKQPKESTIS--------- 427
Query: 543 NPGDLLIHGMPIHTHIVLTG-FESHKYVQNSLITMY--AKCGDLNS------SNYIFEGL 593
I + + + L + H+ S++ Y K D + Y + +
Sbjct: 428 ------IPSIYLELKVKLENEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 594 AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD-RFSLS-----EGLAAAAKLA 647
H + E + + R V+ D RF L + A A +
Sbjct: 478 GH---------------HLKNIEHPERMTLFRM--VFLDFRF-LEQKIRHDSTAWNASGS 519
Query: 648 VLEEGHQL----------HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQP 694
+L QL +L + F+ ++ C + D+LRIA
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI--CSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 66/471 (14%), Positives = 143/471 (30%), Gaps = 126/471 (26%)
Query: 615 EEVLKLLVKMRH--TGVY--FDRFSLSEGLAAAAKLAVLEEGHQLH--GLATKLGF-DLD 667
+E + ++ + +G F LS+ K +EE +++ L + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQ 104
Query: 668 PFVTNAAMDMYGKCGE--IGDVLRIAPQPVDRPRLSWNI-----------LISVFARHGY 714
P + MY + + D A V R + + + + G
Sbjct: 105 P---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGV 158
Query: 715 --FQK---AIET-FDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEF----- 763
K A++ ++ + +++L + + +++ + + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 764 ---GVPAGIE--------------HCVCIIDLLG-RSGRLAEAETFINKMPVTPNDL-VW 804
+ I + C++ LL ++ + A K+ +T V
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 805 RSLLASSKIHGNVE-----LAKKAAEHLF----ELDPSDDSSYVLYSN-----VCAA--- 847
L A++ H +++ L + L + P D VL +N + A
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 848 --TGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELK 905
WD W + + ++S +N + ++ +L
Sbjct: 339 DGLATWD---------NWKHVNCDKLTTIIESS--LNVL-----EPAEYRKMFDRLSVFP 382
Query: 906 KMIKEAGYVPDTSFAL--QDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRV 963
+P +L D + + N + +L P+ STI I
Sbjct: 383 PSAH----IPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEK---QPKESTISI------ 428
Query: 964 CSDCHSVY-KFISKI-----VRRRIILRDPYRFH-HFYGGECS--CLD-YW 1004
S+Y + K+ + R I+ D Y F + LD Y+
Sbjct: 429 ----PSIYLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYF 473
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 6/163 (3%)
Query: 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHG-GLVDKGLQYYNTM 759
S N L ++ G ++A+ + + L+ V P+ S L++ G + + L +Y
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 760 TTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINK-MPVTPNDLVWRSLLASS-KIHGNV 817
P + + + L + A + + + P S LAS K GN+
Sbjct: 70 IRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 818 ELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860
A + +L P +Y ++ W D + ++
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 287 DSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLK 346
S+ V +T S+Y + D +L+ H Q + + + +D L
Sbjct: 94 RSVDVTNTTFLLMAASIYFYDQNPDAALRTLH------QGDSLECMAMTVQILLKLDRLD 147
Query: 347 WGRGIHGLAVKLA-LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDS---VSWNSLV 402
R + + +++ + + +DA ++FQEM+++ S + N
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207
Query: 403 ASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACS 441
A H+ ++ A + L K + L S
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDS--GHPETLINLVVLS 244
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 5e-04
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 902 EELKKMIKEAG---YVPDT--SFALQDTDE 926
+ LKK+ +A Y D+ + A++ T E
Sbjct: 20 QALKKL--QASLKLYADDSAPALAIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1004 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 2e-06
Identities = 54/420 (12%), Positives = 112/420 (26%), Gaps = 46/420 (10%)
Query: 475 YAKSGMMSEAKQVFRIMPKRD---TVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNY 531
++G A++ + +++ T L H + D++ ++
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LL 66
Query: 532 ITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFE 591
+ LG L + + H + + N + A +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 592 GLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA-AKLAVLE 650
L + N L G ++ + L +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 651 EGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFA 710
A + + P +D ++ L +V
Sbjct: 187 LAIHHFEKA----------------------------VTLDPNFLD----AYINLGNVLK 214
Query: 711 RHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE 770
F +A+ + L V +L GL+D + Y P +
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPD 272
Query: 771 HCVCIIDLLGRSGRLAEAETFINK--MPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLF 828
+ + L G +AEAE N + +L + GN+E A +
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 829 ELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGD 888
E+ P +++ ++V G+ + ++ I+ P + S G M D
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA----IRISPTFADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1004 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.26 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.2 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.35 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.3e-21 Score=156.73 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9961431999999999999839999813784998469851993448554287888---9922899999999813998999
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKA 718 (1004)
Q Consensus 642 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 718 (1004)
.+...+..+.|...+....+.. +.+...+..+...|...|++++|...+++... .+...|..+...+...|+.++|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 256 (388)
T d1w3ba_ 178 VFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 0102471999999999999849-464999999715522005299999999985777554799999999999987899999
Q ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-C
Q ss_conf 9999998663599-9758999999982469889999999995751499999724899999887229928999998819-9
Q 001852 719 IETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-P 796 (1004)
Q Consensus 719 ~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~ 796 (1004)
+..|++.++. .| +..++..+..++...|++++|...++..... .+.....+..++.++.+.|++++|.+.+++. .
T Consensus 257 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 257 IDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999984-9998999999999999748799999999865404--873001015799999987899999999999998
Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCC
Q ss_conf 9999-99899999999961999999999999982299998771215337332199
Q 001852 797 VTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 797 ~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
..|+ +.+|..++.++...|+.+.|...++++++++|+++..|..|+++|...|+
T Consensus 334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 6889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.4e-20 Score=150.89 Aligned_cols=214 Identities=17% Similarity=0.119 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 431999999999999839999813784998469851993448554287888---99228999999998139989999999
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
.+....+........... +.....+..+...+...|+.++|...+++... .+...|..+...+...|++++|+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 226 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 000135678888740258-6106899863630102471999999999999849464999999715522005299999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCC
Q ss_conf 998663599975899999998246988999999999575149999-9724899999887229928999998819-9-999
Q 001852 723 DEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-P-VTP 799 (1004)
Q Consensus 723 ~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~-~~p 799 (1004)
++.....+.+...+..+..++...|++++|...|+++.+. .| +...+..++.++...|++++|.+.++.. . .+.
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 303 (388)
T d1w3ba_ 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 9857775547999999999999878999999999999984---9998999999999999748799999999865404873
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9998999999999619999999999999822999987712153373321995089999999832
Q 001852 800 NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 800 ~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+...+..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|....+...+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 0010157999999878999999999999986889899999999999985999999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.6e-14 Score=108.53 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=78.2
Q ss_pred HHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 8139989999999998663--59997589999999824698899999999957514999997248999998872299289
Q 001852 710 ARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAE 787 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 787 (1004)
...+...+|.+.|.+..+. ..++...+..+...+...|++++|...|+...... +-....+..++.++.+.|++++
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~ 224 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEE 224 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCHHHHHHCCCCCCCCHH
T ss_conf 87657999999999999971301222111036888888887755002111222222--2221110133301221111013
Q ss_pred HHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHH
Q ss_conf 99998819-99999-998999999999619999999999999822999987712153373
Q 001852 788 AETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVC 845 (1004)
Q Consensus 788 A~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y 845 (1004)
|.+.+++. ...|+ ..+|..++.++...|+.+.|...++++++++|++...+..++.++
T Consensus 225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 788877899884324999999999999878999999999999970975700112459999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.8e-13 Score=104.58 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=93.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf 82469889999999995751499999724899999887229928999998819-99999-99899999999961999999
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELA 820 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a 820 (1004)
+...+...++...|..........++...+..++.++.+.|++++|.+.+++. ...|+ ..+|..++..+...|+.+.|
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHH
T ss_conf 88765799999999999997130122211103688888888775500211122222222211101333012211110137
Q ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999822999987712153373321995089999999832
Q 001852 821 KKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
...++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8887789988432499999999999987899999999999997
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=4.6e-08 Score=68.06 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC--C-C-HHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 31999999999999839999813784998469851993448554287888--9-9-228999999998139989999999
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--R-P-RLSWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 647 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
+..+.+..++...++...+.+..++..++.++.+.|+.+.|..+|+++.. + + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 24599999999999874998799999999999861338999999999998715786999999999999827868899999
Q ss_pred HHHHHCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC----CC
Q ss_conf 99866359997589999999-82469889999999995751499999724899999887229928999998819----99
Q 001852 723 DEMLKYVKPDHVTFVSLLSA-CNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM----PV 797 (1004)
Q Consensus 723 ~~m~~~~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~ 797 (1004)
+++++..+.+...|...... +...|..+.|..+|+.+...+ +.+...+...++++.+.|+++.|..++++. |.
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999980888679999999999876557789999999999861--003889999999999869868999999999982789
Q ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999--998999999999619999999999999822999987
Q 001852 798 TPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 798 ~p~--~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
.|+ ..+|..++.--..+|+.+.+..+.+++.++-|+...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 86899999999999999849999999999999987711022
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3.2e-08 Score=69.10 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH------CCCCCCCCEEHHHHHHHHCCCCHHHHHH
Q ss_conf 999999961999999999999982------2999987712153373321995089999
Q 001852 806 SLLASSKIHGNVELAKKAAEHLFE------LDPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 806 ~Ll~~~~~~g~~e~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+..++...|+.+.|...++++++ ..|.....+..++.+|...|++++|.+.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999998758799999999999988764266747999999999999987899999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.5e-09 Score=76.58 Aligned_cols=207 Identities=12% Similarity=0.154 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 69999999998269927999999996224977793019999999961431999999999999839999813784998469
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 678 (1004)
..++.+...+.+.+.+++|+++++++.. +.|+..+. |+.....+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a----------------------------------~~~r~~~l 87 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTV----------------------------------WHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHH----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH----------------------------------HHHHHHHH
T ss_conf 9999999999958866999999999998--79887699----------------------------------99999999
Q ss_pred HHCC-CHHHHHHHCCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8519-9344855428788---899228999999998139989999999998663599-9758999999982469889999
Q 001852 679 GKCG-EIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGL 753 (1004)
Q Consensus 679 ~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~ 753 (1004)
...| ++++|...++... ..+..+|+.+...+...|+.++|++.++++++. .| +...|..+...+.+.|.+++|+
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 983767999999999999887742268988758888505378899887555432-1004688998877888888667899
Q ss_pred HHHHHHHHHCCCCC-CCCHHHHHHHHHHHCCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999575149999-97248999998872299------28999998819-9999-9998999999999619999999999
Q 001852 754 QYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGR------LAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAA 824 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~~eA~~~i~~m-~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~ 824 (1004)
..|+.+.+. .| +...|..+..++.+.|. +++|.+.+.+. ...| +...|..+...+. ....+.+...+
T Consensus 167 ~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHH
T ss_pred HHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCHHHHHHHH
T ss_conf 999999987---97449999889999987456310235477679999999849885699999877988-62718899999
Q ss_pred HHHHHCCCCCCCCE--EHHHHHHH
Q ss_conf 99982299998771--21533733
Q 001852 825 EHLFELDPSDDSSY--VLYSNVCA 846 (1004)
Q Consensus 825 ~~~~~l~p~~~~~~--~~l~~~y~ 846 (1004)
++++++.|+....+ ..++.+|.
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999972877578999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.9e-08 Score=68.59 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=25.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999887229928999998819-------999999-9899999999961999999999999982299
Q 001852 775 IIDLLGRSGRLAEAETFINKM-------PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m-------~~~p~~-~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
++.++...|++++|...+++. ...|+. ..|..+...+...|+.+.|...+++++++.+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999998758799999999999988764266747999999999999987899999999999999765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-09 Score=78.70 Aligned_cols=170 Identities=6% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHHHCCCHHHHHHHCCCCCC--C-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCH
Q ss_conf 8469851993448554287888--9-9228999999998139-989999999998663599-975899999998246988
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVD--R-PRLSWNILISVFARHG-YFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLV 749 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~ 749 (1004)
...|.+.+..++|.+.++++.+ | +..+|+.....+...| +.++|+..+++.++. .| +..+|..+...+...|++
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999958866999999999998798876999999999998376799999999999988-774226898875888850537
Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCC------HHHH
Q ss_conf 999999999575149999-9724899999887229928999998819-99999-9989999999996199------9999
Q 001852 750 DKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGN------VELA 820 (1004)
Q Consensus 750 ~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~------~e~a 820 (1004)
++|+..++.+.+. .| +...|..++.++.+.|++++|.+.++++ ...|+ ...|..+.......+. .+.|
T Consensus 129 ~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 129 SQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp TTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8899887555432---1004688998877888888667899999999987974499998899999874563102354776
Q ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHHC
Q ss_conf 9999999822999987712153373321
Q 001852 821 KKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
...++++++++|++...+..++.++...
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~ 233 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDR 233 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 7999999984988569999987798862
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=5.6e-11 Score=87.76 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=130.7
Q ss_pred HCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 81992669999840899---877699999999982699--2799999999622497779301999999996143199999
Q 001852 579 KCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQ--GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGH 653 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 653 (1004)
..|.+++|...|+...+ ++...|..+..++...++ .++|+..+.++... .|.
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~--------------------- 141 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DER--------------------- 141 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCH---------------------
T ss_conf 877899999999999986888679898864899884304289999999999855--921---------------------
Q ss_pred HHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998399998137-84998469851993448554287888---992289999999981399899999999986635
Q 001852 654 QLHGLATKLGFDLDPFV-TNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYV 729 (1004)
Q Consensus 654 ~i~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 729 (1004)
+... .......+...|..++|...++.... .+..+|+.+...+...|+.++|...+.+..+.
T Consensus 142 -------------~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~- 207 (334)
T d1dcea1 142 -------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV- 207 (334)
T ss_dssp -------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH-
T ss_pred -------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_conf -------------211110578999874455289999999988718987999999999999826889899988776776-
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHH-HHHHH
Q ss_conf 999758999999982469889999999995751499999724899999887229928999998819-9999999-89999
Q 001852 730 KPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSL 807 (1004)
Q Consensus 730 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~L 807 (1004)
.|+.. .....+...+..+++...+..... ..++....+..++..+...|+.++|...+.+. +..|+.. +|..+
T Consensus 208 ~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 208 LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 89999---999999882441488999998877--1866056788799999998669999999998876291379999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH
Q ss_conf 9999961999999999999982299998771215337332
Q 001852 808 LASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA 847 (1004)
Q Consensus 808 l~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 847 (1004)
+..+...|+.+.|...++++++++|.+..+|..|+..+..
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999878999999999999998796639999999999867
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.8e-09 Score=77.56 Aligned_cols=199 Identities=8% Similarity=-0.122 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 69999999998269927999999996224977793019999999961431999999999999839999813784998469
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 678 (1004)
..|..+...|.+.|++++|+..|++.... .|+ ++..+..+...|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~----------------------------------~~~a~~~lg~~~ 81 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAI--RPD----------------------------------MPEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCC----------------------------------CHHHHHHHCHHH
T ss_conf 99999999999879999999999985434--999----------------------------------889996004278
Q ss_pred HHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 851993448554287888---99228999999998139989999999998663599-97589999999824698899999
Q 001852 679 GKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.+.|++++|.+.|++... .+..+|..+...|...|+.++|++.|++.++. .| +......+...+...+..+....
T Consensus 82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88777887523446899987611115888999999876679999999999865-30007888999999988535878999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHH-HHC---CCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999575149999972489999988-722---9928999998819-999999-989999999996199999999999998
Q 001852 755 YYNTMTTEFGVPAGIEHCVCIIDLL-GRS---GRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~~lv~~l-~r~---g~~~eA~~~i~~m-~~~p~~-~~~~~Ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
+...... ..+....+.. +..+ +.. +..+.+....... ...|+. ..|..|+..+...|+.+.|...+++++
T Consensus 161 ~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 161 LKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987640---3144434557-78888887777789999999998664084509999999999998789999999999999
Q ss_pred HCCCCCCCCE
Q ss_conf 2299998771
Q 001852 829 ELDPSDDSSY 838 (1004)
Q Consensus 829 ~l~p~~~~~~ 838 (1004)
+.+|++...|
T Consensus 237 ~~~p~~~~~~ 246 (259)
T d1xnfa_ 237 ANNVHNFVEH 246 (259)
T ss_dssp TTCCTTCHHH
T ss_pred HCCCCCHHHH
T ss_conf 8399779999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=4e-09 Score=75.21 Aligned_cols=192 Identities=14% Similarity=0.063 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
Q ss_conf 3784998469851993448554287888---99228999999998139989999999998663599-9758999999982
Q 001852 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACN 744 (1004)
Q Consensus 669 ~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~ 744 (1004)
.++..+...|.+.|++++|...|++... .++.+|+.+..+|...|++++|++.|+++++. .| +..++..++.++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 999999999998799999999999854349998899960042788877788752344689998-7611115888999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHHHHH---HHHHHHHHCCCHHHH
Q ss_conf 469889999999995751499999724899999887229928999998819-9999999899---999999961999999
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWR---SLLASSKIHGNVELA 820 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~---~Ll~~~~~~g~~e~a 820 (1004)
..|++++|...|+...+.. +.+......+.....+.+..+.+..+.... ...+....|. ..++.....+..+.+
T Consensus 117 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8766799999999998653--00078889999999885358789999987640314443455778888887777789999
Q ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999822999987712153373321995089999999832
Q 001852 821 KKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
...........|..+..|..|+.+|...|++++|.+..+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999986640845099999999999987899999999999998
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=2.1e-07 Score=63.66 Aligned_cols=179 Identities=7% Similarity=0.001 Sum_probs=100.9
Q ss_pred CCHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99344855428788----899228999999998139989999999998663599-9-75899999998246988999999
Q 001852 682 GEIGDVLRIAPQPV----DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-D-HVTFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 682 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d-~~t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++++. .| + ...|...+..+...|..++|..+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 245999999999998749987999999999998613389999999999987-1578699999999999982786889999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHH-HHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999575149999972489999988-7229928999998819-9-999999899999999961999999999999982299
Q 001852 756 YNTMTTEFGVPAGIEHCVCIIDLL-GRSGRLAEAETFINKM-P-VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 756 ~~~m~~~~~~~p~~~~y~~lv~~l-~r~g~~~eA~~~i~~m-~-~~p~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
|+.+.+. .+.+...|...+... ...|..+.|..+++.+ . ...+...|..++......|+++.|+.+++++++..|
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999980--88867999999999987655778999999999986100388999999999986986899999999998278
Q ss_pred CCCC----CEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9987----712153373321995089999999832
Q 001852 833 SDDS----SYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 833 ~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.++. .+......-...|+.+.+.++.+.+.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98689999999999999984999999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=2.1e-09 Score=77.12 Aligned_cols=51 Identities=8% Similarity=-0.164 Sum_probs=20.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999619999999999999822999987712153373321995089999999
Q 001852 810 SSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 810 ~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
.+...++.+.|...+.++++.+|.+...+..++++|...|++++|.+..+.
T Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 251 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999986699999999988762913799999999999878999999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=8.9e-07 Score=59.41 Aligned_cols=140 Identities=7% Similarity=-0.082 Sum_probs=105.8
Q ss_pred HHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 846985199344855428788899228999999998139989999999998663599-9758999999982469889999
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGL 753 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~ 753 (1004)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++. .| +...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-dp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999998779999999998648988999999999999858914678789999998-5523466788999998542499999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999575149999972489999988722992899999881999999-99899999999961999999999999982299
Q 001852 754 QYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
..|+.......-.+... |. ..|. ...+. ..++..+..++...|+.+.|...+++++++.|
T Consensus 91 ~~~~kAl~~~~~n~~~~-~~-------~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLID-YK-------ILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTTCSEEE-CG-------GGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHH-HH-------HHHH-----------HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998672673678-99-------8665-----------43630588999999999997899999999999983699
Q ss_pred CC
Q ss_conf 99
Q 001852 833 SD 834 (1004)
Q Consensus 833 ~~ 834 (1004)
+.
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred CC
T ss_conf 80
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=4.8e-06 Score=54.49 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999998246988999999999575
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
+..+...+...|++++|+.+|+....
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999981739999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1e-06 Score=58.94 Aligned_cols=116 Identities=8% Similarity=-0.107 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Q ss_conf 99758999999982469889999999995751499999724899999887229928999998819-99999-99899999
Q 001852 731 PDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLL 808 (1004)
Q Consensus 731 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll 808 (1004)
|+...+...+..+...|++++|+..|+.+... .+.+...|..++.+|.+.|++++|...+++. .+.|+ ...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 64999999999999869999999999999985--9998999981789874100000124788888871887389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHC
Q ss_conf 9999619999999999999822999987712153373321
Q 001852 809 ASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 809 ~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
.++...|+.+.|...++++++++|++...+....+.+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999879999999999999874955679899999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=1.7e-06 Score=57.55 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHH
Q ss_conf 99999998139989999999998663599-9758999999982469889999999995751499999-724899999887
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLG 780 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~ 780 (1004)
......|...|++++|+..|++.++. .| +...|..++.++...|++++|+..|+.+. .+.|+ ...|..++.+|.
T Consensus 8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 8 KEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHH
T ss_conf 99999999869999999999999985-99989999817898741000001247888888---718873899999999999
Q ss_pred HCCCHHHHHHHHHH
Q ss_conf 22992899999881
Q 001852 781 RSGRLAEAETFINK 794 (1004)
Q Consensus 781 r~g~~~eA~~~i~~ 794 (1004)
+.|++++|...+++
T Consensus 84 ~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 84 EMESYDEAIANLQR 97 (201)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 87999999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.4e-05 Score=51.24 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9999998139989999999998663599-975899999998246988999999999575149999972489999988722
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 782 (1004)
.....|.+.|++++|+..|++.++. .| +...|..+..++...|++++|...|+.+.+.
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------------------- 73 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------------------- 73 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--------------------
T ss_conf 9999999958999999986602110-0011333245678887405421288889999987--------------------
Q ss_pred CCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHH
Q ss_conf 992899999881999999-998999999999619999999999999822999987712153373
Q 001852 783 GRLAEAETFINKMPVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVC 845 (1004)
Q Consensus 783 g~~~eA~~~i~~m~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y 845 (1004)
.|+ ..+|..++.++...|+.+.|...++++++++|+++..+..+..+.
T Consensus 74 ---------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 74 ---------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf ---------------5446687799999999949999999989999872999799999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=4.1e-05 Score=48.16 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC----------------EEHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999996199999999999998229999877----------------121533733219950899999998
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS----------------YVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 803 ~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~----------------~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.|..++.++...|+.+.|...++++++..|.++.. +..++.+|...|+|++|.......
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 678899999854249999999999998672673678998665436305889999999999978999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=0.00015 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=9.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9619999999999999822999
Q 001852 812 KIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
...|+.+.|...+++..+++|.
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC---
T ss_pred HHHCCHHHHHHHHHHHHHHCCC
T ss_conf 9846599999999999975977
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.4e-06 Score=53.61 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 89999999981399899999999986635999758999999982469889999999995751499999724899999887
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG 780 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 780 (1004)
.+......+...|++++|+..|++.+.. .|....+ .+.-........ ...|..+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~-~~~~~~~------------~~~~~~~~~~~~--------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSF------------SNEEAQKAQALR--------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCC------------CSHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHCCCC------------CHHHHHHHCHHH--------HHHHHHHHHHHH
T ss_conf 9999999999969999999999999887-5101000------------357776406467--------999999999988
Q ss_pred HCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHH
Q ss_conf 229928999998819-9999-9998999999999619999999999999822999987712153373321995089
Q 001852 781 RSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m-~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
+.|++++|...+++. ...| ++..|..++.++...|+.+.|...++++++++|+++.....++.++...+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6421101100000001002231034677799998722299999999999972989899999999999999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=9.9e-06 Score=52.33 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHH
Q ss_conf 998999999999619999999999999822999987712153373
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVC 845 (1004)
Q Consensus 801 ~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y 845 (1004)
+..|..++.++...|+.+.|...++++++++|+++..+..++++.
T Consensus 71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 267788999999812799999999999984989899999999783
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.1e-05 Score=52.05 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHH
Q ss_conf 9887229928999998819-99999-998999999999619999999999999822999987712153373321995089
Q 001852 777 DLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
..+.+.|++++|...+++. ...|+ ...|..+...+...|+.+.|...++++++++|+++..|..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999589999999866021100011333245678887405421288889999987544668779999999994999999
Q ss_pred HHHHHHHH
Q ss_conf 99999983
Q 001852 855 ENVRRQMG 862 (1004)
Q Consensus 855 ~~~~~~m~ 862 (1004)
....+...
T Consensus 98 ~~~~~~a~ 105 (159)
T d1a17a_ 98 LRDYETVV 105 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99899998
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.5e-05 Score=51.12 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=57.2
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHH
Q ss_conf 99887229928999998819-99999-99899999999961999999999999982299998771215337332199508
Q 001852 776 IDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDD 853 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 853 (1004)
+..+...|++++|...+++. ...|+ +.+|..+..++...|+.+.|...++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999832
Q 001852 854 VENVRRQMGW 863 (1004)
Q Consensus 854 a~~~~~~m~~ 863 (1004)
|....+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=5.2e-05 Score=47.50 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCC
Q ss_conf 9999887229928999998819-99999-998999999999619999999999999822999987712153373321995
Q 001852 774 CIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 774 ~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
.+..+|.+.|++++|...+++. ...|+ ...|..++.++...|+++.|...++++++++|+++.+...+..+....+..
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 49999877622011000223222013104889998899998827899999999999985989899999999999999869
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.3e-05 Score=51.45 Aligned_cols=105 Identities=11% Similarity=-0.013 Sum_probs=57.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHHHH
Q ss_conf 99998246988999999999575149999972489999988722992---8999998819-999999---9899999999
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL---AEAETFINKM-PVTPND---LVWRSLLASS 811 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~---~eA~~~i~~m-~~~p~~---~~~~~Ll~~~ 811 (1004)
+++.+...+.+++|.+.|+..... -+.+.+.+..++.+|.+.++. ++|.+++++. ...|++ .+|..|+.++
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 988736999999999999998832--999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHH
Q ss_conf 9619999999999999822999987712153373
Q 001852 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVC 845 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y 845 (1004)
...|+.+.|+..++++++++|++..+..++..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9973169999999999976909899999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00015 Score=44.33 Aligned_cols=109 Identities=9% Similarity=0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998246988999999999575149999972489999988722992899999881999999998999999999619
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~Ll~~~~~~g 815 (1004)
+...+..+...|++++|+..|..........+...... ......+ ...++..+..++...|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~------------~~~~~~~-------~~~~~~nla~~y~k~~ 76 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE------------AQKAQAL-------RLASHLNLAMCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH------------HHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH------------HHHHCHH-------HHHHHHHHHHHHHHHH
T ss_conf 99999999996999999999999988751010003577------------7640646-------7999999999988642
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999999822999987712153373321995089999999832
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+++.|+..++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 110110000000100223103467779999872229999999999997
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1e-06 Score=59.02 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 0243147764079903899999998
Q 001852 498 TWNALIGGHSEKEEPDKALKAYKRM 522 (1004)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~m 522 (1004)
.|+.+...+...|+..+|+..|.+-
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999869999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=1.3e-05 Score=51.65 Aligned_cols=87 Identities=21% Similarity=0.109 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCC
Q ss_conf 9999887229928999998819-99999-998999999999619999999999999822999987712153373321995
Q 001852 774 CIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 774 ~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
.++..+.+.|++++|...+++. ...|+ +.+|..++.++...|+.+.|+..++++++++|+++..+..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf 99999998760589999886101121111001233545641012587741000001111110000037899999997899
Q ss_pred HHHHHHHHH
Q ss_conf 089999999
Q 001852 852 DDVENVRRQ 860 (1004)
Q Consensus 852 ~~a~~~~~~ 860 (1004)
++|.+..+.
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2e-05 Score=50.30 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 30999999997089979999999996
Q 001852 396 VSWNSLVASHVQDEKYIDALKIFSNM 421 (1004)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~l~~~m 421 (1004)
.+|+.+...+...|+..+|+..|.+.
T Consensus 187 ~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 187 QPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999869999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.70 E-value=3.5e-05 Score=48.62 Aligned_cols=75 Identities=11% Similarity=-0.045 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH
Q ss_conf 899999887229928999998819-99999-9989999999996199999999999998229999877121533733
Q 001852 772 CVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 772 y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
|..+..++.+.|++++|...+++. .+.|+ +..|..++.++...|+++.|...++++++++|+++.++..|..++.
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99899999864021013666554431000223677769999998047999999999999859899999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.00018 Score=43.79 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 99999887229928999998819-99999-99899999999961999999999999982299998771
Q 001852 773 VCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSY 838 (1004)
Q Consensus 773 ~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~ 838 (1004)
..++.+|.+.|++++|.+.+++. ...|+ ...|..++.++...|+++.|...++++++++|+++...
T Consensus 71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 61999999846530111010001000000012467768999996899999999999998298989999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.61 E-value=0.0006 Score=40.34 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEE
Q ss_conf 89999999996199999999999998229999877121533733219950899999998328994379520899699699
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVN 882 (1004)
Q Consensus 803 ~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~ 882 (1004)
++..+..++...|+.+.|...++++++++|.++..|..++.+|...|+|++|....+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------------------ 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL------------------ 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------
T ss_conf 99619999998465301110100010000000124677689999968999999999999982------------------
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9922899998848999999999999998
Q 001852 883 SFGMGDHSHPDTEHIYAKLEELKKMIKE 910 (1004)
Q Consensus 883 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 910 (1004)
.|...++...+..+..++++
T Consensus 131 --------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 --------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --------STTCHHHHHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHH
T ss_conf --------98989999999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=0.00019 Score=43.76 Aligned_cols=127 Identities=13% Similarity=0.008 Sum_probs=90.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHCCCHHH
Q ss_conf 8139989999999998663599-97589999999824698899999999957514999997-248999998872299289
Q 001852 710 ARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAE 787 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~e 787 (1004)
...|+.++|++.+++.++. .| |...+..+...++..|++++|...|+...+. .|+. ..+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 8888999999999999997-8999999999999999879999999999999986---99738999999999983466378
Q ss_pred HHHHHHHC--CCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEH
Q ss_conf 99998819--9999999-89999999996199999999999998229999877121
Q 001852 788 AETFINKM--PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVL 840 (1004)
Q Consensus 788 A~~~i~~m--~~~p~~~-~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~ 840 (1004)
+..-.... ...|+.. .+...+..+...|+.+.|...++++.++.|..+..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99875444203586479999999999996799899999999998339999810015
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.60 E-value=0.00067 Score=39.99 Aligned_cols=60 Identities=7% Similarity=0.048 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 899999999961999999999999982299998771215337332199508999999983
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 803 ~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
++..+..++...|+.+.|...++++++++|.+...|..++.+|...|++++|....+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al 125 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 998499998776220110002232220131048899988999988278999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00043 Score=41.30 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999998139989999999998663599-975899999998246988999999999575
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
+..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|+..++.+.+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999859999999999999884-964589998688999881860778999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.00034 Score=41.97 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 899999999961999999999999982299998771215337332199508999999983
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 803 ~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
.|..+..++...|+.+.|...++++++++|.++..|..++.+|...|++++|....+...
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999899999864021013666554431000223677769999998047999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00086 Score=39.26 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEH-------HHHHH
Q ss_conf 999887229928999998819-99999-9989999999996199999999999998229999877121-------53373
Q 001852 775 IIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVL-------YSNVC 845 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~-------l~~~y 845 (1004)
+++.+.+.|++++|.+.+++. ...|+ ...|..+..++...|+++.|...++++++++|+++..+.. +++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999985999999999999988496458999868899988186077899999999868012788988999999999999
Q ss_pred HHCCCCHHHHHHHHH
Q ss_conf 321995089999999
Q 001852 846 AATGRWDDVENVRRQ 860 (1004)
Q Consensus 846 ~~~g~~~~a~~~~~~ 860 (1004)
.+.+++++|....+.
T Consensus 90 ~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 90 FKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHH
T ss_conf 993889999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.39 E-value=0.00083 Score=39.37 Aligned_cols=89 Identities=9% Similarity=-0.062 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHH
Q ss_conf 999999998139989999999998663599-975899999998246988999999999575149999-972489999988
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLL 779 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 779 (1004)
+-.+...+.+.|++++|+..|++.+.. .| +...|..+..++.+.|++++|...|+...+. .| +...+..++.+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHH
T ss_conf 999999999876058999988610112-1111001233545641012587741000001111---110000037899999
Q ss_pred HHCCCHHHHHHHHHH
Q ss_conf 722992899999881
Q 001852 780 GRSGRLAEAETFINK 794 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~ 794 (1004)
...|++++|.+.+++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 997899999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00055 Score=40.57 Aligned_cols=92 Identities=9% Similarity=-0.000 Sum_probs=33.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCCCCCC---CHHHHHHHHH
Q ss_conf 99998139989999999998663599975899999998246988---99999999957514999997---2489999988
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLV---DKGLQYYNTMTTEFGVPAGI---EHCVCIIDLL 779 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l 779 (1004)
+..+...+++++|.+.|++.+..-+.+..++..+..++.+.+.. ++|+.+|+.+.. ..|.. +.+..++.+|
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~---~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHH
T ss_conf 88736999999999999998832999899999999999985126789999999999986---069931999999999999
Q ss_pred HHCCCHHHHHHHHHHC-CCCCC
Q ss_conf 7229928999998819-99999
Q 001852 780 GRSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
.+.|++++|.+.++++ .+.|+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9973169999999999976909
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0024 Score=36.22 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCCC
Q ss_conf 8999999998139989999999998663599-975899999998246988999999999575----149999972
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTT----EFGVPAGIE 770 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 770 (1004)
.|..++..+...|++++|+..+++++.. .| +...+..++.++...|+..+|+..|+++.. +.|+.|..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999999998879905789999999984-9851999999999999855799999999999999899848996899
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.005 Score=34.08 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9899999999961999999999999982299998771215337332199508999999983
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 802 ~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..|..+..++...|+.+.|...++++++++|.+...|..|+.+|...|++.+|.+.++..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999999887990578999999998498519999999999998557999999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=6e-05 Score=47.07 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHCCCCC-CCCHHHHHHH
Q ss_conf 8139989999999998663599-9758999999982469----------88999999999575149999-9724899999
Q 001852 710 ARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGG----------LVDKGLQYYNTMTTEFGVPA-GIEHCVCIID 777 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 777 (1004)
-+.+.+++|+..|++.++. .| +...+..+..++...+ .+++|+..|+.+.+ +.| +...|..++.
T Consensus 8 ~r~~~fe~A~~~~e~al~~-~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHH
T ss_conf 9873699999999999861-8831089999999998762133336778878889999999887---30120587766899
Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHC
Q ss_conf 88722992899999881999999998999999999619999999999999822999987712153373321
Q 001852 778 LLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m~~~p~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
+|...|++. ++... ..++++.|...++++++++|+++.++..|+....+.
T Consensus 84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHCCCCH------------HHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 998701011------------35788---------988678763121100025988899999999999979
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.91 E-value=0.0076 Score=32.89 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=57.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHC--CCCC----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 9998139989999999998663--5999----------758999999982469889999999995751499999724899
Q 001852 707 SVFARHGYFQKAIETFDEMLKY--VKPD----------HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC 774 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~--~~pd----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 774 (1004)
..+...|++++|+..|++.++. -.|+ ...|..+..++...|.+++|...++.....+.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~---------- 86 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN---------- 86 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC----------
T ss_conf 9999859999999999999986844201020012102799999999999982863001576643553043----------
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988722992899999881999999-----9989999999996199999999999998229999877
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVTPN-----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~p~-----~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
+.+. ..++ ..++..++.++...|+.+.|...+++++++.|+..+.
T Consensus 87 ------~~~~------------~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 87 ------RRGE------------LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp ------HHCC------------TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ------CCCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf ------1002------------4554431127877526999998888888899999999866874230
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.59 E-value=0.015 Score=30.87 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCC-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999999998139989999999998663------5999-----75899999998246988999999999575
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKY------VKPD-----HVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
.|+.+..+|...|++++|++.+++.+.. ..++ ...+..+..++...|++++|+..|+...+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999982863001576643553043100245544311278775269999988888888999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.55 E-value=0.00055 Score=40.55 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCC
Q ss_conf 999999999998229999877121533733219
Q 001852 817 VELAKKAAEHLFELDPSDDSSYVLYSNVCAATG 849 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 849 (1004)
++.|...++++++++|+++..|..++++|...|
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 888999999988730120587766899998701
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.42 E-value=0.00029 Score=42.44 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=47.7
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHHCCCHHHHH
Q ss_conf 2469889999999995751499999724899999887229928999998819-9999999-8999999999619999999
Q 001852 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~Ll~~~~~~g~~e~a~ 821 (1004)
...|++++|+..++..++ ..+-+...+..++.+|++.|++++|.+.++.. ...|+.. .+..+....+..+..+.+.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 888899999999999999--789999999999999998799999999999999869973899999999998346637899
Q ss_pred HHHHHH-HHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999-82299998771215337332199508999999983
Q 001852 822 KAAEHL-FELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 822 ~~~~~~-~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
...... +..+|++...+...++++...|++++|...+....
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 875444203586479999999999996799899999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.40 E-value=0.021 Score=29.86 Aligned_cols=315 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99998769987943399999971146870356899999999668898021458999761789988999998308999911
Q 001852 216 YRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTI 295 (1004)
Q Consensus 216 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 295 (1004)
+.++.+-=-.||......+...|...|.++.|..++. +..-+..++..|.+.+++..|.+++.... +..
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~---------~~~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~ 70 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAAVDGARKAN--STR 70 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHH---------HTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH---------HCCCHHHHHHHHHHHCCHHHHHHHHHHCC--CHH
T ss_conf 4569998758985789999999987877999999998---------67899999999970315999999998808--899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 49999999980799026999999988769998952599999851489973458899999999558972689999999877
Q 001852 296 SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYS 375 (1004)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~ 375 (1004)
+|..+...+.+......+ .+.......+......++..+-..|..+....++...... -..+..+++.++..|+
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
T ss_conf 999999999727287899-----9999875357887899999998769859999999999757-7444679999999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 13993568998712899991309999999970899799999999965529767774599998861699873889999999
Q 001852 376 EAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHAL 455 (1004)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 455 (1004)
+.+.......+-.. .+......++..+-+.+.+.++.-++.++... ......
T Consensus 145 k~~~~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~-------------------------~~A~~~ 196 (336)
T d1b89a_ 145 KFKPQKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-------------------------DNAIIT 196 (336)
T ss_dssp TTCHHHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-------------------------HHHHHH
T ss_pred HHCHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-------------------------HHHHHH
T ss_conf 86949999999860---23599999999988748749999999855879-------------------------999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99957998367999999977705993889999851999980002431477640799038999999987619999821599
Q 001852 456 VITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFA 535 (1004)
Q Consensus 456 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 535 (1004)
+..+ .++..-....+..+.+..+.+...++.....+-.+...+.++......-++.+..+.+++-
T Consensus 197 ~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~------------- 261 (336)
T d1b89a_ 197 MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV------------- 261 (336)
T ss_dssp HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT-------------
T ss_pred HHHC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHC-------------
T ss_conf 9976--5445669999999972478699999999999759999999999856579989999999853-------------
Q ss_pred HHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 89985138830010021134566654356741378599569998199266999984089987769999
Q 001852 536 NVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNA 603 (1004)
Q Consensus 536 ~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 603 (1004)
+.+...+.........+ +..+.++|...|...++++.-+...+.-..=|......
T Consensus 262 ----------~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~~~fd~~~l~~ 316 (336)
T d1b89a_ 262 ----------KQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQ 316 (336)
T ss_dssp ----------TCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSCHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf ----------88077999999999818---09999999999867124678999998713437999998
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.025 Score=29.37 Aligned_cols=220 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 4137859956999819926699998408998-77699999999982----699279999999962249777930199999
Q 001852 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANAL----HGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 566 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
|+..+..|...+...+++++|.+.|++..+. +..++..|...|.. ..+...|...+......+...-...+..+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~ 80 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 80 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCC
T ss_conf 98999999999998779999999999999789999999999999809996056999987501222111111231350122
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHCCCCC-CCCHHHHHHHHHHHHH---
Q ss_conf 9-996143199999999999983999981378499846985----199344855428788-8992289999999981---
Q 001852 641 A-AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGK----CGEIGDVLRIAPQPV-DRPRLSWNILISVFAR--- 711 (1004)
Q Consensus 641 ~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~--- 711 (1004)
. .+......+.+...+....+.| .......+...+.. ......+...+.... ..+..+|..+...|..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 432112123677988876554321---46688763433237873310157788875552001110104455556406887
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----C
Q ss_conf -3998999999999866359997589999999824----698899999999957514999997248999998872----2
Q 001852 712 -HGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNH----GGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGR----S 782 (1004)
Q Consensus 712 -~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~ 782 (1004)
..+...+...++...+ ..+......+...+.. ..+.++|..+|+...+. + .+..+..|+.+|.+ .
T Consensus 158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC-C---CHHHHHHHHHHHHCCCCCC
T ss_conf 43342200012211323--2222332211312126765431034445467665303-6---8999999999998399976
Q ss_pred CCHHHHHHHHHH
Q ss_conf 992899999881
Q 001852 783 GRLAEAETFINK 794 (1004)
Q Consensus 783 g~~~eA~~~i~~ 794 (1004)
.+.++|.+.+++
T Consensus 232 ~n~~~A~~~~~k 243 (265)
T d1ouva_ 232 RNEKQAIENFKK 243 (265)
T ss_dssp CCSTTHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 189999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0072 Score=33.05 Aligned_cols=78 Identities=14% Similarity=0.035 Sum_probs=48.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf 999998246988999999999575149999972489999988722992899999881999999-9989999999996199
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN-DLVWRSLLASSKIHGN 816 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~-~~~~~~Ll~~~~~~g~ 816 (1004)
.++..+...|++++|...|++..+.....+. ..++ ..++..|+.++...|+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~----------------------------~~~~~~~~l~~Lg~~~~~~g~ 61 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI----------------------------STIDKVSVLDYLSYAVYQQGD 61 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----------------------------CSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----------------------------CCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999999977999999999999998865301----------------------------476478999987268886577
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEHHHH
Q ss_conf 999999999998229999877121533
Q 001852 817 VELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.+.|...++++++++|+++.++..+..
T Consensus 62 ~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 62 LDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 398887887798869297999999999
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| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.043 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999824698899999999957
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
+..+..++...|++++|+.+++++.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987268886577398887887798
|