Citrus Sinensis ID: 001853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000----
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
cccEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcEEEEEEEEEEcccccccccccccccEEEccccccccEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccccEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEcccccccEEEEEEEEccccccEEEEEEEcccccccccEEcccEEEEEEEEEccccccccEEEEcccccccccEEEEEcccccEEEEEEccEEEEEEccccEEEEcccccccccccccccEEEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEcccEEEEEEEEEEccccccccEEEEcccEEEEEEEEccEEEEEEEEcccccccccccccccccccccccccHHccccccccccccccccHHHcccccccccccccEEEEEEEEcccccccccEEEEccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEEccccccccccEEEEEEccccEEEEEEcccEEEEEcccccEEEEccccccccccccccccEEEEEEcccEEEEEEEccEEEEEEEcccccEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEccEEEEEEEEEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEEccccEEEcccccccEEEEEEEccccccccEEEEEccccEEEEEcccccccccccccEEEEEEEEc
ccHHHHHHccccccHHHHHEEEEcccHHHccccccccccccccccccccccccccccEEEEEccEEEEEEEEcccccHHccEccccccccccccccccccEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEcccEEEEEEEccccccEEEEEEHHccccccccccccEEEEccccEEEEcccccEEEEEEEcccEEEEEEccccHHHcccccccHccccccEEEccEEEEEHHHHcHHcEEEEEEcccccccEEEEEEcccccccccEEEEccEEEEEEEEEccccccEEEEEEEcccccccccEEEccccccEEEEEEEcEEEEEcccccccEEEcccccccccccccccccEEEEEEcEEEEcccccEEEEEEccccEEEEEEEEcccEEEEEEEEEcccccccHEEEEEcccEEEEEEcccccHHEEEHcccccccccccccccccccccccccEEccccccccccHHcccccccHHccccHcccccccccEEEEEcccHcccccHHHEEccccccHHHHHHHccccccccEEEccccccEEEEEccccccccccccccccccccccEEEEEEEcccEEEEEEccEEEEEEccccccccccEEEEEEcccccEEEEEccccEEEEEccccEcccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEEEEcccccEEEEEcccccccccccccEEEEEcccccccccccccHHHHHHccccccccccccccccccccEEEEEEHcccEEEccccccEEEEEEcccccccEEEEEccccccccccccccEEcccccccccccccccccEEEEEEEEcccccccccEEEEEEEcccEEEEEEEEcccccccccccccEEEEEEEccccEEcccccccccccccccccccccccccccEcEEEEEcccccccEEEEEccccEEEEEEccccccccccccccEEEEcccccccccccEEEEEcccEEEEEEccccccccccccHEEEEEEEEc
msfaaykmmhwptgiancgsgfithsradyvpqipliqteeldselpskrgigpvpnlVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSqggadnsrrrDSIILAFEDAKisvlefddsihglritsmhcfespewlhlkrgresfargplvkvdpqgrcggvLVYGLQMIILKAsqggsglvgdedtfgsgggfsariESSHvinlrdldmkHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSIsttlkqhpliwsamnlphdaykllavpspiggvLVVGANTIHYHSQSASCALALNNYAVsldssqelprssfsVELDAAHATWLQNDVALLSTKTGDLVLLTVVYdgrvvqrldlsktnpsvltsdittIGNSLFFLGSRLGDSLLVQFtcgsgtsmlssglkeefgdieadapstkrlrrSSSDALQdmvngeelslygsasnntesAQKTFSFAVRDSlvnigplkdfsyglrinadasatgiskqsnyelvelpgckgiwtvyhkssrghnadssrmaayddEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGArildgsymtqdlsfgpsnsesgsgsenstVLSVSIAdpyvllgmsdgsirllvgdpstctvsvqtpaaiesskkpvssctlyhdkgpepwlrktstdawlstgvgeaidgadggpldqgdiysVVCYesgaleifdvpnfncvftvdkfvsgrtHIVDTYMREALKDSeteinssseegtgqgrkeNIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYlfegpentsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapcqritifknisghqgfflsgsrpcwcmVFRErlrvhpqlcdgsIVAFTVLHNVNCNHGFIYVTSQGILkicqlpsgstydnywpvQKVVFFLYF
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVrvqeegskesknsgetkrrVLMDGISAASLELVCHYRLHGNVESLAIlsqggadnsrRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFArgplvkvdpqgRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGrvvqrldlsktnpsvltsdITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKeefgdieadapstkrlrrsssDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADAsatgiskqsnyELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTiaagnlfgrrrVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQtpaaiesskkpvssCTLYHDkgpepwlrkTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMRealkdseteinssseegtgqgrkenIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPEntsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPsnsesgsgsensTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPvstsrslsvsnvsasrlrnLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
***AAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEE********RGIGPVPNLVVTAANVIEIYVVRV*****************VLMDGISAASLELVCHYRLHGNVESLAILSQGGA****RRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSL**********FSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSG*********************************************************TFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHK***********MAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMT********************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQ**************CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMR****************************MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFE************************************************GAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLY*
**FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELD*ELP**RGIGPVPNLVVTAANVIEIYVVRVQ********************GISAASLELVCHYRLHGNVESLAILSQGGA*NSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEW*********FARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSG*****************IESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGS********************P**KRLRRSSSDALQDMVNGEELS**************TFSFAVRDSLVNIGPLKDFSYGLRI*************NYELVELPGCKGIWTVYH***************YDDEYHAYLIISLEARTMVLETADL****TESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTV*************PVSSCTLYHDKGPEPW*****************************DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMRE**************************SMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLF*******************************************************ITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQE************KRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADA************ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLS****************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPA*************LYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALK******************KENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGP*********************SASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGS*******************APSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKS***************DEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASR**********************APCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFLYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1004 2.2.26 [Sep-21-2011]
Q9FGR0 1442 Cleavage and polyadenylat yes no 0.985 0.685 0.722 0.0
Q7XWP1 1441 Probable cleavage and pol yes no 0.971 0.676 0.587 0.0
Q9V726 1455 Cleavage and polyadenylat yes no 0.885 0.610 0.281 4e-92
Q9EPU4 1441 Cleavage and polyadenylat yes no 0.591 0.412 0.325 2e-82
Q10570 1443 Cleavage and polyadenylat yes no 0.588 0.409 0.323 1e-81
Q10569 1444 Cleavage and polyadenylat yes no 0.589 0.409 0.325 2e-81
A8XPU7 1454 Probable cleavage and pol N/A no 0.493 0.340 0.260 2e-46
Q9N4C2 1454 Probable cleavage and pol yes no 0.502 0.347 0.275 1e-45
Q7SEY2 1456 Protein cft-1 OS=Neurospo N/A no 0.824 0.568 0.227 2e-40
Q2TZ19 1393 Protein cft1 OS=Aspergill yes no 0.560 0.404 0.249 2e-32
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2 Back     alignment and function desciption
 Score = 1514 bits (3920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/1027 (72%), Positives = 861/1027 (83%), Gaps = 38/1027 (3%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQT-EELDSELPS-KRGIGPVPNL 58
            MSFAAYKMMHWPTG+ NC SG+ITHS +D   QIP++   +++++E P+ KRGIGP+PN+
Sbjct: 1    MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60

Query: 59   VVTAANVIEIYVVRVQEEG-SKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLA 117
            V+TAAN++E+Y+VR QEEG ++E +N    KR  +MDG+   SLELVCHYRLHGNVES+A
Sbjct: 61   VITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESIA 120

Query: 118  ILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESF 177
            +L  GG ++S+ RDSIIL F DAKISVLEFDDSIH LR+TSMHCFE P+WLHLKRGRESF
Sbjct: 121  VLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESF 180

Query: 178  ARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVIN 237
             RGPLVKVDPQGRCGGVLVYGLQMIILK SQ GSGLVGD+D F SGG  SAR+ESS++IN
Sbjct: 181  PRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYIIN 240

Query: 238  LRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPL 297
            LRDL+MKHVKDF+F+HGYIEPV+VIL E E TWAGRVSWKHHTC++SALSI++TLKQHP+
Sbjct: 241  LRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHPV 300

Query: 298  IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPR 357
            IWSA+NLPHDAYKLLAVPSPIGGVLV+ ANTIHYHSQSASCALALNNYA S DSSQELP 
Sbjct: 301  IWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPA 360

Query: 358  SSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITT 417
            S+FSVELDAAH TW+ NDVALLSTK+G+L+LLT++YDGR VQRLDLSK+  SVL SDIT+
Sbjct: 361  SNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITS 420

Query: 418  IGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477
            +GNSLFFLGSRLGDSLLVQF+C SG +    GL++E  DIE +    KRLR  +SD  QD
Sbjct: 421  VGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRM-TSDTFQD 479

Query: 478  MVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQS 537
             +  EELSL+GS  NN++SAQK+FSFAVRDSLVN+GP+KDF+YGLRINADA+ATG+SKQS
Sbjct: 480  TIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQS 539

Query: 538  NYEL--------------------------VELPGCKGIWTVYHKSSRGHNADSSRMAAY 571
            NYEL                          VELPGCKGIWTVYHKSSRGHNADSS+MAA 
Sbjct: 540  NYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAAD 599

Query: 572  DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGA 631
            +DEYHAYLIISLEARTMVLETADLLTEVTESVDY+VQGRTIAAGNLFGRRRVIQVFE GA
Sbjct: 600  EDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGA 659

Query: 632  RILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT 691
            RILDGS+M Q+LSFG SNSES SGSE+STV SVSIADPYVLL M+D SIRLLVGDPSTCT
Sbjct: 660  RILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADPYVLLRMTDDSIRLLVGDPSTCT 719

Query: 692  VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGD 751
            VS+ +P+ +E SK+ +S+CTLYHDKGPEPWLRK STDAWLS+GVGEA+D  DGGP DQGD
Sbjct: 720  VSISSPSVLEGSKRKISACTLYHDKGPEPWLRKASTDAWLSSGVGEAVDSVDGGPQDQGD 779

Query: 752  IYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGT 811
            IY VVCYESGALEIFDVP+FNCVF+VDKF SGR H+ D  + E     E E+N +SE+ T
Sbjct: 780  IYCVVCYESGALEIFDVPSFNCVFSVDKFASGRRHLSDMPIHEL----EYELNKNSEDNT 835

Query: 812  GQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPV 871
                 + I + +VVELAMQRWS HH+RPFLFA+L DGTILCY AYLF+G ++T K+++ +
Sbjct: 836  S---SKEIKNTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVDST-KAENSL 891

Query: 872  STSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGS 931
            S+    ++++  +S+LRNL+F R PLD  TRE T  G   QRIT+FKNISGHQGFFLSGS
Sbjct: 892  SSENPAALNSSGSSKLRNLKFLRIPLDTSTREGTSDGVASQRITMFKNISGHQGFFLSGS 951

Query: 932  RPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDN 991
            RP WCM+FRERLR H QLCDGSI AFTVLHNVNCNHGFIYVT+QG+LKICQLPS S YDN
Sbjct: 952  RPGWCMLFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIYDN 1011

Query: 992  YWPVQKV 998
            YWPVQK+
Sbjct: 1012 YWPVQKI 1018
CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2 Back     alignment and function description
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1 Back     alignment and function description
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1 Back     alignment and function description
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2 Back     alignment and function description
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1 Back     alignment and function description
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2 Back     alignment and function description
>sp|Q7SEY2|CFT1_NEUCR Protein cft-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cft-1 PE=3 SV=2 Back     alignment and function description
>sp|Q2TZ19|CFT1_ASPOR Protein cft1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cft1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1004
255539681 1461 cleavage and polyadenylation specificity 0.994 0.683 0.770 0.0
225455571 1442 PREDICTED: cleavage and polyadenylation 0.979 0.681 0.759 0.0
296084122 1448 unnamed protein product [Vitis vinifera] 0.979 0.678 0.755 0.0
356559917 1447 PREDICTED: cleavage and polyadenylation 0.984 0.682 0.755 0.0
356530945 1449 PREDICTED: cleavage and polyadenylation 0.985 0.682 0.756 0.0
224120960 1455 predicted protein [Populus trichocarpa] 0.985 0.679 0.752 0.0
30696088 1442 cleavage and polyadenylation specificity 0.985 0.685 0.722 0.0
24415580 1442 putative cleavage and polyadenylation sp 0.985 0.685 0.721 0.0
10257491 1448 cleavage and polyadenylation specificity 0.985 0.683 0.718 0.0
297792471 1444 hypothetical protein ARALYDRAFT_495232 [ 0.987 0.686 0.721 0.0
>gi|255539681|ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1628 bits (4216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1028 (77%), Positives = 886/1028 (86%), Gaps = 30/1028 (2%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELP-SKRGIGPVPNLV 59
            MS+AAYKM+HWPTGI +C SG+ITHSRAD+VPQIP IQT+ LDSE P SKRGIGP+PNL+
Sbjct: 1    MSYAAYKMLHWPTGIESCASGYITHSRADFVPQIPPIQTDNLDSEWPPSKRGIGPMPNLI 60

Query: 60   VTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAIL 119
            VTA +V+E+YVVRVQE+GS+ES++S ETKR  LMDG+S ASLELVCHYRLHGNVES+ +L
Sbjct: 61   VTAGSVLEVYVVRVQEDGSRESRSSRETKRGGLMDGVSGASLELVCHYRLHGNVESMVVL 120

Query: 120  SQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFAR 179
               G D+SRRRDSIILAF+DAKISVLEFDDSIHGLR +SMHCFE PEWLHLKRGRESFAR
Sbjct: 121  PTEGGDSSRRRDSIILAFKDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLKRGRESFAR 180

Query: 180  GPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLR 239
            GPL+KVDPQGRCGG+LVY +QMIIL+A+Q  SGLVGD+D   SGG  SAR++SS+VINLR
Sbjct: 181  GPLLKVDPQGRCGGILVYDMQMIILRAAQASSGLVGDDDALSSGGSISARVQSSYVINLR 240

Query: 240  DLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIW 299
            D+DMKHVKDFIF+H YIEPV+VILHERELTWAGRVSWKHHTCMISALSISTTLKQ  LIW
Sbjct: 241  DMDMKHVKDFIFLHDYIEPVVVILHERELTWAGRVSWKHHTCMISALSISTTLKQPTLIW 300

Query: 300  SAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSS 359
            S +NLPHDAYKLLAVP PIGGVLV+ ANTIHYHS+SA+ ALALNNYAVS+DSSQELPR+S
Sbjct: 301  SVVNLPHDAYKLLAVPPPIGGVLVICANTIHYHSESATYALALNNYAVSIDSSQELPRAS 360

Query: 360  FSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIG 419
            FSVELDA  A WL NDVALLS K G+L+LL++VYDGRVVQRLDLSK+  SVLTSDITTIG
Sbjct: 361  FSVELDAVKAAWLLNDVALLSAKNGELLLLSLVYDGRVVQRLDLSKSKASVLTSDITTIG 420

Query: 420  NSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMV 479
            NSLFFLGSRLGDSLLVQFT G G S++SSGLKEE G+IE D PS KRL+RS+SD LQDMV
Sbjct: 421  NSLFFLGSRLGDSLLVQFTNGLGPSVVSSGLKEEVGEIEGDVPSAKRLKRSASDGLQDMV 480

Query: 480  NGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNY 539
            +GEELSLYGS +NNTESAQK+FSFAVRDSL+N+GPLKDFSYGLR N DASATGI+KQSNY
Sbjct: 481  SGEELSLYGSTANNTESAQKSFSFAVRDSLINVGPLKDFSYGLRSNYDASATGIAKQSNY 540

Query: 540  EL--------------------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDD 573
            +L                          V+LPGC+GIWTVYHK++RGHN D S+MAA  D
Sbjct: 541  DLVCCSGHGKNGTLCILRQSIRPEMITEVDLPGCRGIWTVYHKNARGHNVDLSKMAAAAD 600

Query: 574  EYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARI 633
            EYHAYLIIS+EARTMVLETADLL+EVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARI
Sbjct: 601  EYHAYLIISMEARTMVLETADLLSEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARI 660

Query: 634  LDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVS 693
            LDGS+MTQDLS G SNSES  GSE++TV SVSIADPYVL+ M+DGSIRLL+GD STC VS
Sbjct: 661  LDGSFMTQDLSIGSSNSESSPGSESATVSSVSIADPYVLIKMTDGSIRLLIGDSSTCMVS 720

Query: 694  VQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDG---ADGGPLDQG 750
            + TP+A E+S++ VS+CTLYHDKGPEPWLRK STDAWLSTGV EAIDG   ADGGP DQG
Sbjct: 721  INTPSAFENSERSVSACTLYHDKGPEPWLRKASTDAWLSTGVSEAIDGAESADGGPHDQG 780

Query: 751  DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEG 810
            DIY +VCYESGALEIFDVPNFN VF+VDKFVSG+TH+ D Y+RE  KDS+ + N  SEE 
Sbjct: 781  DIYCIVCYESGALEIFDVPNFNRVFSVDKFVSGKTHLADAYVREPPKDSQEKTNRISEEV 840

Query: 811  TGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDP 870
             G GRKEN H+MK VELAMQRWS HHSRPFLF +LTDGTILCY AYLFE P+ TSK++D 
Sbjct: 841  AGLGRKENAHNMKAVELAMQRWSGHHSRPFLFGVLTDGTILCYHAYLFEAPDATSKTEDS 900

Query: 871  VSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSG 930
            VS    + + ++SASRLRNLRF R PLD+Y +EET     CQRITIF NISGHQGFFL G
Sbjct: 901  VSAQNPVGLGSISASRLRNLRFVRVPLDSYIKEETSTENSCQRITIFNNISGHQGFFLLG 960

Query: 931  SRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYD 990
            SRP W MVFRERLRVHPQLCDGSIVAFTVLHNVNCNHG IYVTSQG LKICQLPS S YD
Sbjct: 961  SRPAWFMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGNLKICQLPSFSNYD 1020

Query: 991  NYWPVQKV 998
            NYWPVQK+
Sbjct: 1021 NYWPVQKI 1028

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455571|ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084122|emb|CBI24510.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559917|ref|XP_003548242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356530945|ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120960|ref|XP_002318462.1| predicted protein [Populus trichocarpa] gi|222859135|gb|EEE96682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30696088|ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana] gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=AtCPSF160; Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|24415580|gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10257491|dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792471|ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata] gi|297309955|gb|EFH40379.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1004
TAIR|locus:2153122 1442 CPSF160 "cleavage and polyaden 0.538 0.375 0.726 0.0
ZFIN|ZDB-GENE-040709-2 1451 cpsf1 "cleavage and polyadenyl 0.440 0.304 0.353 7.2e-97
UNIPROTKB|Q10569 1444 CPSF1 "Cleavage and polyadenyl 0.443 0.308 0.351 6.8e-96
RGD|1306406 1386 Cpsf1 "cleavage and polyadenyl 0.440 0.318 0.353 7.5e-95
UNIPROTKB|F1PC28 1398 CPSF1 "Uncharacterized protein 0.403 0.289 0.366 8.3e-95
MGI|MGI:2679722 1441 Cpsf1 "cleavage and polyadenyl 0.440 0.306 0.351 9.3e-95
UNIPROTKB|Q10570 1443 CPSF1 "Cleavage and polyadenyl 0.442 0.307 0.350 2.5e-94
FB|FBgn0024698 1455 Cpsf160 "Cleavage and polyaden 0.470 0.324 0.310 2.3e-79
DICTYBASE|DDB_G0281585 1628 cpsf1 "cleavage and polyadenyl 0.260 0.160 0.349 8.5e-65
UNIPROTKB|F1RSN8 1108 CPSF1 "Uncharacterized protein 0.304 0.276 0.350 3.9e-61
TAIR|locus:2153122 CPSF160 "cleavage and polyadenylation specificity factor 160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2091 (741.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 396/545 (72%), Positives = 464/545 (85%)

Query:     1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQT-EELDSELPS-KRGIGPVPNL 58
             MSFAAYKMMHWPTG+ NC SG+ITHS +D   QIP++   +++++E P+ KRGIGP+PN+
Sbjct:     1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60

Query:    59 VVTAANVIEIYVVRVQXXXXXXXXXX-XXTKRRVLMDGISAASLELVCHYRLHGNVESLA 117
             V+TAAN++E+Y+VR Q              KR  +MDG+   SLELVCHYRLHGNVES+A
Sbjct:    61 VITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESIA 120

Query:   118 ILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESF 177
             +L  GG ++S+ RDSIIL F DAKISVLEFDDSIH LR+TSMHCFE P+WLHLKRGRESF
Sbjct:   121 VLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESF 180

Query:   178 ARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVIN 237
              RGPLVKVDPQGRCGGVLVYGLQMIILK SQ GSGLVGD+D F SGG  SAR+ESS++IN
Sbjct:   181 PRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYIIN 240

Query:   238 LRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPL 297
             LRDL+MKHVKDF+F+HGYIEPV+VIL E E TWAGRVSWKHHTC++SALSI++TLKQHP+
Sbjct:   241 LRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHPV 300

Query:   298 IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPR 357
             IWSA+NLPHDAYKLLAVPSPIGGVLV+ ANTIHYHSQSASCALALNNYA S DSSQELP 
Sbjct:   301 IWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPA 360

Query:   358 SSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITT 417
             S+FSVELDAAH TW+ NDVALLSTK+G+L+LLT++YDGR VQRLDLSK+  SVL SDIT+
Sbjct:   361 SNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITS 420

Query:   418 IGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477
             +GNSLFFLGSRLGDSLLVQF+C SG +    GL++E  DIE +    KRLR +S D  QD
Sbjct:   421 VGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMTS-DTFQD 479

Query:   478 MVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQS 537
              +  EELSL+GS  NN++SAQK+FSFAVRDSLVN+GP+KDF+YGLRINADA+ATG+SKQS
Sbjct:   480 TIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQS 539

Query:   538 NYELV 542
             NYELV
Sbjct:   540 NYELV 544
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0006378 "mRNA polyadenylation" evidence=ISS
GO:0006379 "mRNA cleavage" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006397 "mRNA processing" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
ZFIN|ZDB-GENE-040709-2 cpsf1 "cleavage and polyadenylation specific factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q10569 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306406 Cpsf1 "cleavage and polyadenylation specific factor 1, 160kDa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC28 CPSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2679722 Cpsf1 "cleavage and polyadenylation specific factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q10570 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0024698 Cpsf160 "Cleavage and polyadenylation specificity factor 160" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281585 cpsf1 "cleavage and polyadenylation specificity factor 160 kDa subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSN8 CPSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGR0CPSF1_ARATHNo assigned EC number0.72240.98500.6858yesno
Q7XWP1CPSF1_ORYSJNo assigned EC number0.58710.97110.6766yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038486001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037665001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)
   •••• 0.865
GSVIVG00016982001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (771 aa)
    ••• 0.757
GSVIVG00020879001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (427 aa)
    ••• 0.681
GSVIVG00028411001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (572 aa)
    • • 0.676
GSVIVG00000022001
SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)
     •• 0.517
GSVIVG00006902001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (863 aa)
     •• 0.510
GSVIVG00023663001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (97 aa)
   • •  0.506
GSVIVG00010279001
SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (561 aa)
   • •  0.506
GSVIVG00037110001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (512 aa)
   • •  0.496
GSVIVG00001949001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (2072 aa)
   • •  0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1004
COG5161 1319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 1e-22
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 1e-07
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information 
 Score =  105 bits (262), Expect = 1e-22
 Identities = 117/652 (17%), Positives = 222/652 (34%), Gaps = 115/652 (17%)

Query: 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSM 159
            L LV  + L   V  +    Q     S  +D ++L    AKIS+L FD   +  R  S+
Sbjct: 48  GLVLVDEHMLLEKVTQIEKYPQI----SSEQDGLLLLTHRAKISLLRFDSQANEFRTISL 103

Query: 160 HC---------------FESPEW-------LHLKRGRESFARGPLVK-----VDPQGRCG 192
           H                F + E+       L       +F    + K     V      G
Sbjct: 104 HYYEGKFKGKSLVELAKFSTLEFDIRSSCALLFNEDIGNFLPFHVNKNDDDEVRIDVDLG 163

Query: 193 GVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLD--MKHVKDFI 250
            +     +   +  SQG +     + T    G FSA    S V+   +LD  +K++ DF+
Sbjct: 164 -MFQMSKRHFSIFPSQGTNTFNKRKRTL-FPGKFSA---PSKVLKFSELDGKIKNIIDFV 218

Query: 251 FVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYK 310
           F+  Y  P + +L++ +L+   + +   +       ++     +  +I   + LP D   
Sbjct: 219 FLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLGAGRSAVIDEFLVLPRDFR- 277

Query: 311 LLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYA---VSLDSSQELPRSSFSVELDAA 367
            + V  P+G +L      I   S  +S  + LN+ +         +++  S  +      
Sbjct: 278 -VTVAGPVGALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRGT 336

Query: 368 HATWL-----QNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSK----TNPSVLTSDITTI 418
            + W+       +   L    GD   L +  DG+ +   D++      +     S ++ +
Sbjct: 337 TSIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCV 396

Query: 419 ---GNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDAL 475
               N LFF G    +S +++       S+L +    E    E   P    L   + + +
Sbjct: 397 GHVNNLLFFGGVGDSNSRVLRI-----KSLLPT---IETRASEGVGP----LEGGNDEEM 444

Query: 476 QDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYG-------------- 521
            D  +  E  L+G+         + +   + ++L N GP+ DF+ G              
Sbjct: 445 DDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPITDFAVGKVDVEKGLPIPNIG 504

Query: 522 ------LRINADASATGISKQSNYELVELP----GCKGIWTVYHKSSRGHNADSSRMAAY 571
                  + +   +A  +   S    +         + +W+      RG+        A 
Sbjct: 505 LLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQ---KIRGYLRC---SRAL 558

Query: 572 DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGA 631
           D     + I+S  + + +   ++         +Y     T+         RV+QV     
Sbjct: 559 D-----FYILSRVSDSRIFRWSEEFLLEVSG-EYTRDVNTLLFVEFGEENRVVQVTPSYL 612

Query: 632 RILDGSY-MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRL 682
              D    M   + F            +  V + S+ DP +L+    G I  
Sbjct: 613 LRYDQDLRMLGRVEF-----------ASRAVEARSVRDPLILVVRDSGKILT 653

Length = 1319
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1004
KOG1896 1366 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 100.0
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
KOG1898 1205 consensus Splicing factor 3b, subunit 3 [RNA proce 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 90.32
COG4247364 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph 90.08
PF14727418 PHTB1_N: PTHB1 N-terminus 90.06
KOG0294362 consensus WD40 repeat-containing protein [Function 87.76
PF14727418 PHTB1_N: PTHB1 N-terminus 85.34
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 84.85
KOG1274 933 consensus WD40 repeat protein [General function pr 81.8
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 80.81
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 80.75
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-149  Score=1317.60  Aligned_cols=875  Identities=40%  Similarity=0.664  Sum_probs=730.2

Q ss_pred             chhhhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEEcCCEEEEEEEEecccccccc
Q 001853            2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES   81 (1004)
Q Consensus         2 ~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~~~~~~   81 (1004)
                      +|++|++.|+||+|+||++|+||....                           +||||+++|.|+||++.++.+..+..
T Consensus         1 m~~vykq~h~~T~ve~s~ag~Ft~~~~---------------------------~nlvV~~~N~L~vyri~~~~e~~t~~   53 (1366)
T KOG1896|consen    1 MFAVYKQEHDPTVVENSSAGLFTNNRT---------------------------ENLVVAGTNILRVYRISRDAEALTKN   53 (1366)
T ss_pred             CcchhhhccCchhhccceeeeEecCCC---------------------------cceEEecccEEEEEEeccchhhcccc
Confidence            468999999999999999999998877                           99999999999999998764221110


Q ss_pred             cCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeee
Q 001853           82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC  161 (1004)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~  161 (1004)
                       +      +..|++....+|+|+++|++||+|++|++++.+++    .+|+|+++|++||+|++|||+.+|.|+|+||||
T Consensus        54 -~------~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHy  122 (1366)
T KOG1896|consen   54 -D------PGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHY  122 (1366)
T ss_pred             -C------ccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEE
Confidence             1      11222223347999999999999999999999999    899999999999999999999999999999999


Q ss_pred             ecCcchhcccCCcccccCCCeEEECCCCCEEEEEEecCeEEEEEcccCCCCCCCCCCCCCCCCCcccceeeeEEEEeccc
Q 001853          162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL  241 (1004)
Q Consensus       162 ~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~~~~L~ilP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~l  241 (1004)
                      ||+++   .+.|++....+|.++|||++||++|++|+..|+||||++.+ .+++++.- ..+...++++.+||+|.+++|
T Consensus       123 fE~~~---~~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~~~-~~~~~~ss~~~pSyvi~~reL  197 (1366)
T KOG1896|consen  123 FEGPE---FRKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEELF-PSGFSKSSFTAPSYVIALREL  197 (1366)
T ss_pred             ecccc---ccccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccccc-cccccccccccceeEEEhhhh
Confidence            99998   55677766789999999999999999999999999998864 45444321 123344568999999999999


Q ss_pred             C--CCceeeEEEecCCCCceEEEEEEccCCcccceeeeeeeEEEEEEeeccccccccceeeeccCCCCCcEEEEecCCCC
Q 001853          242 D--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIG  319 (1004)
Q Consensus       242 d--i~nViD~~FL~gy~ePtlaiLye~~~tw~gr~~~r~dt~~~~~~sLn~~~k~~~~i~s~~~LP~d~~~lipvP~plG  319 (1004)
                      |  |+||+|++|||||+|||+||||||.+||+||+..|+|||.+.+++||+.+|.||+||++.+||+||+++.++|.|+|
T Consensus       198 deki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piG  277 (1366)
T KOG1896|consen  198 DEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIG  277 (1366)
T ss_pred             hhhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCc
Confidence            9  99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCeEEEEeCCC-ceeEeecccccccCCCcCCCCCccEEEecceeEEEeeCCEEEEEeCCCCEEEEEEEEC-Cce
Q 001853          320 GVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRV  397 (1004)
Q Consensus       320 GvLVig~n~Iiy~dq~~-~~~v~vN~~~~~~t~~~~~~~~~~~i~l~~~~~~~l~~~~~Ll~~~~G~L~~L~l~~d-gr~  397 (1004)
                      ||||++.|.++|++|++ +++|++|.++...+.||+.+|+.+.|.|+|+..+|++.++++++..+|++|+|+|.+| +|.
T Consensus       278 gvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~  357 (1366)
T KOG1896|consen  278 GVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRS  357 (1366)
T ss_pred             cEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccc
Confidence            99999999999999999 7999999999999999999999999999999999999999999999999999999999 799


Q ss_pred             EeEEEEEecCCCcccceEEEEcCCeEEEEeeeCCeeEEEEeeCCCcccccCCCccccCCcccCCccccccccCCcccccc
Q 001853          398 VQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD  477 (1004)
Q Consensus       398 V~~l~l~~~g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (1004)
                      |+.+++.++...++++|++..+|++||+||+.|||+|++|+++....  ..+...+..+.+.+....+++        ++
T Consensus       358 V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~--~e~~~re~~d~~~~~~~~~~~--------d~  427 (1366)
T KOG1896|consen  358 VQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRA--SEGVRREEGDTESDGYSKKRV--------DD  427 (1366)
T ss_pred             hhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccC--CccccccccCCcCCcchhhcc--------cc
Confidence            99999999999999999999999999999999999999999875421  111111111111111111111        11


Q ss_pred             cccccccc-------------cccCCCCCcccccceeeEEEeeeecccCCcccccccccccCC---------------CC
Q 001853          478 MVNGEELS-------------LYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINAD---------------AS  529 (1004)
Q Consensus       478 ~~d~~~~~-------------ly~~~~~~~~~~~~~~~l~v~Dsl~NigPI~D~~vg~~~~~~---------------~~  529 (1004)
                      +.|...++             -||++...   ....|.|++||+|+|||||.||++|+....+               +.
T Consensus       428 ~~d~~~~d~~~~~~~~~g~~~~~g~~a~~---t~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~  504 (1366)
T KOG1896|consen  428 TQDVRRDDEKSAELFEAGSEENYGSGAQE---TVQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVA  504 (1366)
T ss_pred             hhhhhhhhhhccchhhccccccCCcccce---eeeeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEE
Confidence            11111111             22222221   1233899999999999999999999876543               13


Q ss_pred             ceeccCCceEEE------------EeCCCccEeEEEeecCCCCCCCCcccccccCcccccEEEEEecCceEEEEecCcee
Q 001853          530 ATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLT  597 (1004)
Q Consensus       530 ~sG~g~~GsL~v------------~~lpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~~~~l~  597 (1004)
                      |+|+|++|+|++            |+||||.++|||..+..+++         .++..|.||++|..++|+||++++++.
T Consensus       505 ~sGhgkngaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~  575 (1366)
T KOG1896|consen  505 TSGHGKNGALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELL  575 (1366)
T ss_pred             eccCCCCcceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhh
Confidence            999999999999            78999999999998654432         223459999999999999999999999


Q ss_pred             EEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC-cceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEe
Q 001853          598 EVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMS  676 (1004)
Q Consensus       598 ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~-~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~  676 (1004)
                      |++ .++|..+++||+||++|++++|||||++++|++|++ ++.|.+++.     .|     ..+++++++||||++...
T Consensus       576 Ev~-~s~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd-----~~-----~~vv~~sv~dpyv~v~~~  644 (1366)
T KOG1896|consen  576 EVS-GSGFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD-----SG-----AIVVQTSVADPYVAVRSS  644 (1366)
T ss_pred             hcc-cceeEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc-----cC-----CcEEEEeccCceEEEEEc
Confidence            999 999999999999999999999999999999999995 689999883     33     459999999999999999


Q ss_pred             CCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccc------cccccCc-------cccccCCCC
Q 001853          677 DGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTST------DAWLSTG-------VGEAIDGAD  743 (1004)
Q Consensus       677 ~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~------~~~~~~~-------~~~~~~~~~  743 (1004)
                      .|.|.+|.++.+..+|-+..+   .  +.++.++|++.|.+|  +|.+-..      ..++-.+       ....+++++
T Consensus       645 ~g~i~~~~l~~~s~rl~~~~~---~--s~~~~sv~~~~dlsg--~f~~~s~l~~k~~~~~gr~~~~~~~~~~~~kv~~~e  717 (1366)
T KOG1896|consen  645 EGRITLYDLEEKSHRLALHDP---M--SFKVVSVSLPADLSG--MFTTLSDLSLKGNEANGRSSEAEGLQSLPCKVDDEE  717 (1366)
T ss_pred             CCceEEEEeccccchhhccCc---c--cceeEEEechhhhcc--ceEEEeeecccCcccccccccccccccCCccccCCC
Confidence            999999999998877776665   2  667999999999999  7765441      1111111       012344443


Q ss_pred             CCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccc
Q 001853          744 GGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMK  823 (1004)
Q Consensus       744 ~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1004)
                      .....+..+||++++++|.|+||++|++++||.++.|+.++++|.|......+.+                  .....+.
T Consensus       718 gg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~------------------~~s~~~~  779 (1366)
T KOG1896|consen  718 GGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTN------------------KESEDLE  779 (1366)
T ss_pred             CCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcccc------------------ccccchH
Confidence            2111222399999999999999999999999999999999999988654443221                  0012357


Q ss_pred             eEEEEEeecCCC--CCCcEEEEEeeCCcEEEEEEEeecCCCCCCCCCCCCcccccccccccccccccceeEEeccCCcCC
Q 001853          824 VVELAMQRWSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYT  901 (1004)
Q Consensus       824 i~eill~~lg~~--~~~p~L~v~~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~~~~  901 (1004)
                      ++++.+..||.+  ..+|||++.+.+|++++|++|+....                        +.++++|+|+|+....
T Consensus       780 l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~~------------------------~~~~~~f~kvp~~~~~  835 (1366)
T KOG1896|consen  780 LKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKAFPQLSQ------------------------GNLKVFFKKVPHNLNI  835 (1366)
T ss_pred             HHHhhccccchhhhccCCceEEEEeCceEEEEeeccccCc------------------------cchhhhhhhCCHhhcc
Confidence            899999999988  77899999999999999999961110                        2388999999985332


Q ss_pred             C----------C------CCC-CCCCccceEEecccCCceEEEecCCCCeEE-EEcccccEEEeccCCCceEEEecCCCC
Q 001853          902 R----------E------ETP-HGAPCQRITIFKNISGHQGFFLSGSRPCWC-MVFRERLRVHPQLCDGSIVAFTVLHNV  963 (1004)
Q Consensus       902 ~----------~------~~~-~~~~~~~l~~f~~i~g~sgVFv~G~~P~~i-~~~~~~l~~~~~~~~~~v~~f~~F~~~  963 (1004)
                      +          +      +.+ .+...++|++|++|+||+||||||.+|+|| .+.||.+|+||+.++|+|.+|+||||+
T Consensus       836 ~~~~p~~~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnv  915 (1366)
T KOG1896|consen  836 RTDKPHFLCKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNV  915 (1366)
T ss_pred             cccCCcccchhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeecc
Confidence            1          1      111 346788999999999999999999999999 689999999999999999999999999


Q ss_pred             CCCCcEEEEecCCcEEEEECCCCCccccCccceEEeee
Q 001853          964 NCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFF 1001 (1004)
Q Consensus       964 ~~~~gfiy~~~~~~lri~~lp~~~~~d~~wp~rkvpl~ 1001 (1004)
                      |||+||||+|.+|.+|||++|..+.||+.||+||||||
T Consensus       916 n~p~gfiyvd~~~~l~i~~lp~~~~Ydn~wPvkkIpl~  953 (1366)
T KOG1896|consen  916 NCPRGFIYVDRQGELVICVLPEALSYDNKWPVKKIPLR  953 (1366)
T ss_pred             CCCcceEEECCCceEEEEEcchhcccCCCCcccccccc
Confidence            99999999999999999999999999999999999998

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1004
4a0b_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 6e-06
3i7h_A 1143 Crystal Structure Of Ddb1 In Complex With The H-Box 6e-06
2b5l_A 1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 7e-06
3ei4_A 1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 7e-06
4a08_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 1e-05
3e0c_A 1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 1e-05
4e54_A 1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 1e-05
4a0l_A 1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-05
4a11_A 1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 2e-05
4a0a_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 2e-05
3ei1_A 1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 2e-05
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 96/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
           +DP+ R  G+ +Y     ++   +    L            F+ R+E  HVI+++     
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
                 F++G   P +  +++      GR     H              + P  W   N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
             +A  ++AVPSP GG +++G  +I YH+     A+A             + + S  V  
Sbjct: 232 EAEASMVIAVPSPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
             +D   + +L  D+       G L +L +      DG V ++ L +     + +   +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
            + N + F+GSRLGDS LV+    S   G+ +++       G I  D       R+    
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
            +                        T S A ++     G L+    G+ I+  AS    
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
                   ++LPG KG+W +    +R              E    L++S   +T VL   
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
               E TE + +    +T   GN+   +++IQ+     R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1004
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 1e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  205 bits (523), Expect = 1e-54
 Identities = 121/716 (16%), Positives = 225/716 (31%), Gaps = 166/716 (23%)

Query: 1   MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVV 60
           MS+        PT +  C +G  T +                              NL++
Sbjct: 19  MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLI 51

Query: 61  TAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILS 120
                +EIY   V  EG                       L  V    ++G +  + +  
Sbjct: 52  AKNTRLEIY--VVTAEG-----------------------LRPVKEVGMYGKIAVMELFR 86

Query: 121 QGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARG 180
             G      +D + +        +LE+  S   + I +       +    + GR S   G
Sbjct: 87  PKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQD----RIGRPSE-TG 137

Query: 181 PLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240
            +  +DP+ R  G+ +Y     ++   +    L                       N+R 
Sbjct: 138 IIGIIDPECRMIGLRLYDGLFKVIPLDRDNKEL--------------------KAFNIR- 176

Query: 241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300
           L+  HV D  F++G   P +  +++           K +   +           +   W 
Sbjct: 177 LEELHVIDVKFLYGCQAPTICFVYQDPQGRH----VKTYEVSLREKEF------NKGPWK 226

Query: 301 AMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSF 360
             N+  +A  ++AVP P GG +++G  +I YH+     A+A             + + S 
Sbjct: 227 QENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPP-----------IIKQS- 274

Query: 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDG-----RVVQRLDLSKTNPSVLTSDI 415
              +   +         LL    G L +L +  +        ++ L +     + +   +
Sbjct: 275 --TIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECL 332

Query: 416 TTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDAL 475
           T + N + F+GSRLGDS LV+    S          E F ++    P            +
Sbjct: 333 TYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNL---GPIV-------DMCV 382

Query: 476 QDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISK 535
            D+    +  L   +    E +                 L+    G+ I+  AS      
Sbjct: 383 VDLERQGQGQLVTCSGAFKEGS-----------------LRIIRNGIGIHEHAS------ 419

Query: 536 QSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADL 595
                 ++LPG KG+W +                  + E    L++S   +T VL     
Sbjct: 420 ------IDLPGIKGLWPLRSDP--------------NRETDDTLVLSFVGQTRVLMLNGE 459

Query: 596 LTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQ-DLSFGPSNSESGS 654
             E TE + +    +T   GN+   +++IQ+     R++             P       
Sbjct: 460 EVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISV 518

Query: 655 GSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSC 710
            S NS+ + V++      L +    +R +        V+      +  S      C
Sbjct: 519 ASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLC 574
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00