Citrus Sinensis ID: 001864

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000--

MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPEIVASSVENALVLYTHQVLQHIRCRGSQFFSPRIVLSSGDKSKSNYF

cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHcccccccccccccccccEEEEEEEEEHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccHHHHHHHccccEEcccccEEEcccccccEEEEEEEcEEEEEEcccccccccccccccccHHHHHHHHHcccccEEEEEEEEEEEEEEEHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccEEEEcccEEEEccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHccccccccccccccccccccccccc

ccHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccEEEEEEccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHcccccHHEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEHHHHHHHHHHHHHHHcHcccccccccccccccEEHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHccHccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHccHHHHHHHHHccHHHHcccccEEEEccccccEEEEEEccEEEEEEcccccccccccccccccHHHHHHHHcccccHHHHHcccEEEEEEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEccccEEEEEEcEEcccccccEEcccccEEcccccccccccccccccccccccccEEcHHHHcEEEEEEEcHHHHHHcccccccccccccccccccccccc

mesvsegllqlpyrtleeeqksgggsspsegnptdAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALgsleygtshqlgkigdgirlwasidpdLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAAlkltfpydwswktslllggllsatDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFtaqegadvSGVLTVMTLGMFYAAVARTafkgesqqSLHYFWEMVAYIANTLIFILSGVVIAegilgndkifqnhgnSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVkrssggsslitsetgtLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKtfgdlgddeelgpvdwptvKRYIRCLndlegvpmhphsasetgdsldptnlRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNelcdwrglkdnvsfpnyykflqtsmfpqklITYFTVERLEFACSICAAFLRAHKIARQQLHdfigdsgiASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKrllrnpplvkfpkisdlisahpllrelppsvreplelSTKEIMKLSGVtlyregskpsgiwLISNGVVKWtsksirnkhslhpvfthgsnlglyevligkpymsdmvtDSVVLCFFIESDKILSIlrsdpaveDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLrgeiieipyHCIGFLLEGFikthglqeelitppaalipsqgnlsfrsaetsvsaprggepeiVASSVENALVLYTHQVLQHIrcrgsqffsprivlssgdksksnyf

mesvsegllQLPYRTLEEEQKsgggsspsegnpTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKelgaskklnTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKrssggsslitsetGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFktfgdlgddeelgpvdWPTVKRYIRCLNDLEGVpmhphsasetgdsldptNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKfpkisdlisahpllrelppsvreplelstKEIMKLSGVTlyregskpsgiwLISNGVVKWTSKSIRNKHslhpvfthgsnLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPEIVASSVENALVLYTHQVLQHIRcrgsqffsprivlssgdksksnyf

MESVSEGLLQLPYRTLeeeqksgggsspsegNPTDAVIFVGISLVLGIACRHLLRGTRVPYTValliigialgSLEYGTSHQLGKIGDGIRLWASIdpdlllavflpallfESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTslllggllsATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWsglrgavalslslsvkrssggsslITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPEIVASSVENALVLYTHQVLQHIRCRGSQFFSPRIVLSSGDKSKSNYF

***********************************AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK*****SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGV*****************NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLR**************KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALI*************************VASSVENALVLYTHQVLQHIRCRGSQFFSPRIVL***********

*********************************TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLE*****************PTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKR*LR*****KFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQG***********************SSVENALVLYT********************************

MESVSEGLLQLPYRTL***************NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLS*********LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMH**********LDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSF*************EPEIVASSVENALVLYTHQVLQHIRCRGSQFFSPRIVLS**********

*******LLQLPYRTLEEEQKSGGGS**SEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPS*******************EPEIVASSVENALVLYTHQVLQHIRCR**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1002	2.2.26 [Sep-21-2011]
Q9LKW9		1146	Sodium/hydrogen exchanger	yes	no	0.930	0.813	0.709	0.0
Q3YL57		756	Sodium/hydrogen exchanger	no	no	0.731	0.969	0.691	0.0
Q6UJY2		1175	Sodium/hydrogen exchanger	yes	no	0.495	0.422	0.248	2e-35
P26434		717	Sodium/hydrogen exchanger	yes	no	0.383	0.535	0.260	9e-30
Q8BUE1		797	Sodium/hydrogen exchanger	no	no	0.383	0.481	0.260	2e-29
Q6AI14		798	Sodium/hydrogen exchanger	yes	no	0.397	0.498	0.247	2e-27
Q4G0N8		1177	Sodium/hydrogen exchanger	no	no	0.479	0.407	0.236	2e-27
Q01345		759	Na(+)/H(+) exchanger beta	N/A	no	0.386	0.509	0.251	9e-27
Q61165		820	Sodium/hydrogen exchanger	no	no	0.388	0.474	0.254	3e-25
Q8RWU6		535	Sodium/hydrogen exchanger	no	no	0.450	0.842	0.243	7e-25

>sp\|Q9LKW9\|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1	Back alignment and function desciption

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/941 (70%), Positives = 789/941 (83%), Gaps = 9/941 (0%)

Query: 11  LPYRTLEE--EQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLII 68
           + YR LEE  +  S   SS  E +P DAV+FVG+SLVLGIA RHLLRGTRVPYTVALL+I
Sbjct: 9   MAYRFLEEATDSSSSSSSSKLESSPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVI 68

Query: 69  GIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQ 128
           GIALGSLEYG  H LGKIG GIR+W  IDP+LLLAVFLPALLFESSF+MEVHQIKRCL Q
Sbjct: 69  GIALGSLEYGAKHNLGKIGHGIRIWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQ 128

Query: 129 MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188
           M+LLA PGV+IST  LG+ +K+TFPY+W WKTSLLLGGLLSATDPVAVVALLKELGASKK
Sbjct: 129 MVLLAVPGVLISTACLGSLVKVTFPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKK 188

Query: 189 LNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248
           L+TIIEGESLMNDGTAIVV+QLF +M +G++  W +IIKFL +V+LGAVG+GLAFGIASV
Sbjct: 189 LSTIIEGESLMNDGTAIVVFQLFLKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASV 248

Query: 249 LWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQ 308
           +WL FIFNDTVIEI LT+AVSY A++TAQE A  SGVLTVMTLGMFYAA ARTAFKG+SQ
Sbjct: 249 IWLKFIFNDTVIEITLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQ 308

Query: 309 QSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF 368
           +SLH+FWEMVAYIANTLIFILSGVVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ 
Sbjct: 309 KSLHHFWEMVAYIANTLIFILSGVVIAEGILDSDKI-AYQGNSWRFLFLLYVYIQLSRVV 367

Query: 369 VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFV 428
           VVG LYP+L  FGYGL+WKE+IILVWSGLRGAVAL+LSLSVK+SSG S  I+ ETGTLF+
Sbjct: 368 VVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFL 426

Query: 429 FFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDE 488
           FFTGGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A + F DLGDDE
Sbjct: 427 FFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDE 486

Query: 489 ELGPVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWA 547
           ELGP DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW 
Sbjct: 487 ELGPADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWE 545

Query: 548 MLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLIT 607
           MLDEGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL + + P+KL+T
Sbjct: 546 MLDEGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVT 605

Query: 608 YFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVR 667
           YF VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR
Sbjct: 606 YFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVR 665

Query: 668 VNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPP 727
            +FPQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP
Sbjct: 666 SSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPP 725

Query: 728 LVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGV 787
           +VK PK+SD+I++HPL   LPP+  EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+
Sbjct: 726 IVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGI 785

Query: 788 VKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILR 847
           VKW SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+
Sbjct: 786 VKWKSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQ 844

Query: 848 SDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHC 906
           SD  ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + GE IEI  + 
Sbjct: 845 SDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNS 904

Query: 907 IGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFR-SAETS 946
           IG LLEGF+K  G++EELI+ PAAL PS GN SF  S+E S
Sbjct: 905 IGLLLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEAS 945

Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q3YL57\|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1	Back alignment and function description

>sp\|Q6UJY2\|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3	Back alignment and function description

>sp\|P26434\|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1	Back alignment and function description

>sp\|Q8BUE1\|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1	Back alignment and function description

>sp\|Q6AI14\|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2	Back alignment and function description

>sp\|Q4G0N8\|SL9C1_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2	Back alignment and function description

>sp\|Q01345\|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1	Back alignment and function description

>sp\|Q61165\|SL9A1_MOUSE Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWU6\|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1002
261873420		1141	salt overly sensitive 1 [Vitis vinifera]	0.982	0.862	0.769	0.0
225424514		1141	PREDICTED: sodium/hydrogen exchanger 7 [	0.982	0.862	0.768	0.0
449464876		1144	PREDICTED: sodium/hydrogen exchanger 7-l	0.933	0.817	0.790	0.0
380508732		1144	plasmalemma Na+/H+ antiporter [Cucumis s	0.933	0.817	0.789	0.0
99029169		1145	Na+/H+ antiporter [Populus euphratica]	0.937	0.820	0.784	0.0
302028367		1153	SOS1 [Bruguiera gymnorhiza]	0.936	0.813	0.771	0.0
255561775		1143	sodium/hydrogen exchanger plant, putativ	0.939	0.823	0.760	0.0
224111392		1129	sodium proton exchanger [Populus trichoc	0.916	0.813	0.793	0.0
269986105		1153	plasma membrane Na+/H+ antiporter [Zygop	0.930	0.808	0.753	0.0
384368002		1143	uncharacterized protein LOC100789429 [Gl	0.907	0.795	0.773	0.0

>gi\|261873420\|gb\|ACY03274.1\| salt overly sensitive 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1515 bits (3922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/997 (76%), Positives = 864/997 (86%), Gaps = 13/997 (1%)

Query: 1   MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVP 60
           M SV EG+   PYR L EE  S      S  NPTDAVIFVGI LV+GIACR LLRGTRVP
Sbjct: 1   MGSVLEGVF--PYRALGEESSS------SSSNPTDAVIFVGICLVMGIACRQLLRGTRVP 52

Query: 61  YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120
           YTVALLI+GIALGSLE+GTS++LGKIGDGIRLWA+IDP+LLLAVFLPALLFESSF+MEVH
Sbjct: 53  YTVALLILGIALGSLEHGTSNKLGKIGDGIRLWANIDPNLLLAVFLPALLFESSFSMEVH 112

Query: 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180
           QIKRC+VQM++LAGPGV++STF LG+ALK TFPYDWSWKTSLLLGGLLSATDPVAVVALL
Sbjct: 113 QIKRCMVQMLILAGPGVLVSTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALL 172

Query: 181 KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG 240
           KELGA KKL+TIIEGESLMNDGTAIVVYQLF+QMVLGKSF +GA++KFL QVSLGAVG+G
Sbjct: 173 KELGAGKKLSTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNFGAVVKFLTQVSLGAVGIG 232

Query: 241 LAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVAR 300
           LAFG+ASVLWLGFIFNDTVIEI LTLAVSYIA+FTAQEGADVSGVL VMTLGMFYAAVA+
Sbjct: 233 LAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAK 292

Query: 301 TAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360
           TAFKG  QQSLH+FWEMVAYIANTLIFILSGVVIAEG+LG++ IF+NHGNSWGYLILLY+
Sbjct: 293 TAFKGGGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILLYV 352

Query: 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLIT 420
           +VQVSR+ VVG  YP L  FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S  SS ++
Sbjct: 353 YVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLS 412

Query: 421 SETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKT 480
           SETGTLFVFFTGGIVFLTLIVNGSTTQ+ILHLL+MDKLS  KRRILDYTKYEMLN A + 
Sbjct: 413 SETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEA 472

Query: 481 FGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNG 540
           FGDLGDDEELGP DWPTVKRYI  LND+EG  +HPH+  E+ ++L PTNL+DIRIRLLNG
Sbjct: 473 FGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNG 532

Query: 541 VQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQTS 599
           VQAAYW MLDEGRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQTS
Sbjct: 533 VQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTS 592

Query: 600 MFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDA 659
           + PQKLITYFTVERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE+A
Sbjct: 593 ICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEA 652

Query: 660 RKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 719
           RKFLEDVRV FPQVL VVKTRQVT+SVL HLIDY+QNLEK+GLLEEKEM HLHDAVQ+DL
Sbjct: 653 RKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDL 712

Query: 720 KRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSG 779
           K+LLRNPPLVK P++ D+I+ HPLL  LP +VREPLE STKEIMK+ GV LYREGSKPSG
Sbjct: 713 KKLLRNPPLVKIPRMCDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSG 772

Query: 780 IWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 839
           IWLIS+GVVKW SKSIRNKHSL P FTHGS LGLYEVLIGKPY+SDM+TDSVVLCFF+E+
Sbjct: 773 IWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYISDMITDSVVLCFFVET 832

Query: 840 DKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEI 899
           DKI+S+LRSDPAVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT  + GE 
Sbjct: 833 DKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGET 892

Query: 900 IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSVSAPRGGEPEIVA 959
           IEIP++ IGFLL+GFIK    QEELIT PAAL+PS  NLSFRS +TS +   G   +   
Sbjct: 893 IEIPHYSIGFLLDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSGAKVAGSSHQGSP 948

Query: 960 SSVENALVLYTHQVLQHIRCRGSQFFSPRIVLSSGDK 996
             V+    +    +      RG Q  S  +V  S D+
Sbjct: 949 YQVQTRARVIIFDISAFEADRGLQRRSSSLVPHSADQ 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225424514\|ref\|XP_002285248.1\| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi\|297737560\|emb\|CBI26761.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449464876\|ref\|XP_004150155.1\| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|380508732\|gb\|AFD64618.1\| plasmalemma Na+/H+ antiporter [Cucumis sativus]	Back alignment and taxonomy information

>gi\|99029169\|gb\|ABF60872.1\| Na+/H+ antiporter [Populus euphratica]	Back alignment and taxonomy information

>gi\|302028367\|gb\|ADK91080.1\| SOS1 [Bruguiera gymnorhiza]	Back alignment and taxonomy information

>gi\|255561775\|ref\|XP_002521897.1\| sodium/hydrogen exchanger plant, putative [Ricinus communis] gi\|223538935\|gb\|EEF40533.1\| sodium/hydrogen exchanger plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224111392\|ref\|XP_002315837.1\| sodium proton exchanger [Populus trichocarpa] gi\|222864877\|gb\|EEF02008.1\| sodium proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|269986105\|gb\|ACZ57357.1\| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum]	Back alignment and taxonomy information

>gi\|384368002\|ref\|NP_001244939.1\| uncharacterized protein LOC100789429 [Glycine max] gi\|380513814\|gb\|AFD64746.1\| SOS1 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1002
TAIR\|locus:2041100		1146	SOS1 "SALT OVERLY SENSITIVE 1"	0.909	0.794	0.662	0.0
TAIR\|locus:2006762		756	NHX8 "Na+/H+ exchanger 8" [Ara	0.731	0.969	0.624	7.8e-245
UNIPROTKB\|F1PLJ2		1086	SLC9C1 "Uncharacterized protei	0.432	0.398	0.243	3.1e-28
UNIPROTKB\|F1M7D9		1177	Slc9a10 "Protein Slc9a10" [Rat	0.433	0.368	0.235	2.1e-27
MGI\|MGI:2685456		1175	Slc9c1 "solute carrier family	0.433	0.369	0.232	6.4e-27
TIGR_CMR\|CPS_3408		399	CPS_3408 "Na+/H+ antiporter Nh	0.339	0.852	0.284	1.1e-24
UNIPROTKB\|F1MQF9		1137	SLC9A10 "Uncharacterized prote	0.575	0.507	0.204	6.1e-24
UNIPROTKB\|F1PLH9		723	SLC9C1 "Uncharacterized protei	0.432	0.598	0.243	1.7e-23
UNIPROTKB\|Q4G0N8		1177	SLC9C1 "Sodium/hydrogen exchan	0.506	0.431	0.202	4e-20
GENEDB_PFALCIPARUM\|PF13_0019		1920	PF13_0019 "sodium/hydrogen exc	0.335	0.175	0.238	3.2e-19

TAIR\|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3105 (1098.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 608/918 (66%), Positives = 723/918 (78%)

Query:    32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVXXXXXXXXXXSLEYGTSHQLGKIGDGIR 91
             +P DAV+FVG+SLVLGIA RHLLRGTRVPYTV          SLEYG  H LGKIG GIR
Sbjct:    32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSLEYGAKHNLGKIGHGIR 91

Query:    92 LWASIXXXXXXXXXXXXXXXESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151
             +W  I               ESSF+MEVHQIKRCL QM+LLA PGV+IST  LG+ +K+T
Sbjct:    92 IWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQMVLLAVPGVLISTACLGSLVKVT 151

Query:   152 FPYDWSWKTXXXXXXXXXATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211
             FPY+W WKT         ATDPVAVVALLKELGASKKL+TIIEGESLMNDGTAIVV+QLF
Sbjct:   152 FPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVFQLF 211

Query:   212 FQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYI 271
              +M +G++  W +IIKFL +V+LGAVG+GLAFGIASV+WL FIFNDTVIEI LT+AVSY 
Sbjct:   212 LKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASVIWLKFIFNDTVIEITLTIAVSYF 271

Query:   272 AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSG 331
             A++TAQE A  SGVLTVMTLGMFYAA ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSG
Sbjct:   272 AYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFWEMVAYIANTLIFILSG 331

Query:   332 VVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAII 391
             VVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ VVG LYP+L  FGYGL+WKE+II
Sbjct:   332 VVIAEGILDSDKIAYQ-GNSWRFLFLLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESII 390

Query:   392 LVWXXXXXXXXXXXXXXXXXXXXXXXXITSETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451
             LVW                        I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L 
Sbjct:   391 LVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLR 449

Query:   452 LLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG- 510
             LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELGP DWPTV+ YI  L   EG 
Sbjct:   450 LLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGE 509

Query:   511 VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGI 570
             +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLDEGRI++  ANILMQSVDE +
Sbjct:   510 LVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEAL 568

Query:   571 DLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKI 630
             D  S  LCDWRGLK +V+FPNYY FL + + P+KL+TYF VERLE AC I AAFLRAH I
Sbjct:   569 DQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTI 628

Query:   631 ARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHL 690
             ARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +FPQVL VVKT+QVTYSVLNHL
Sbjct:   629 ARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHL 688

Query:   691 IDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPS 750
             + YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK PK+SD+I++HPL   LPP+
Sbjct:   689 LGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPA 748

Query:   751 VREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 810
               EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW SK + N HSLHP F+HGS 
Sbjct:   749 FCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKWKSKILSNNHSLHPTFSHGST 808

Query:   811 LGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLP 870
             LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD  ++DFLWQ+SA+ L ++L P
Sbjct:   809 LGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRP 867

Query:   871 QIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPA 929
             QIFE + MQ++RAL++ E SK+TT + GE IEI  + IG LLEGF+K  G++EELI+ PA
Sbjct:   868 QIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGLLLEGFVKPVGIKEELISSPA 927

Query:   930 ALIPSQGNLSFR-SAETS 946
             AL PS GN SF  S+E S
Sbjct:   928 ALSPSNGNQSFHNSSEAS 945

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=ISS;RCA;IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042542 "response to hydrogen peroxide" evidence=IEP;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR\|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_3408 CPS_3408 "Na+/H+ antiporter NhaP" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4G0N8 SLC9C1 "Sodium/hydrogen exchanger 10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF13_0019 PF13_0019 "sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKW9	NHX7_ARATH	No assigned EC number	0.7098	0.9301	0.8132	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.6267.1	sodium proton exchanger (1129 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1002
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	8e-58
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-48
TIGR00840		559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	1e-42
TIGR00831		525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	7e-38
COG3263		574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	2e-19
PRK05326		562	PRK05326, PRK05326, potassium/proton antiporter; R	1e-15
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	6e-08
pfam00027		91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	2e-06
COG0664		214	COG0664, Crp, cAMP-binding proteins - catabolite g	2e-04
cd00038		115	cd00038, CAP_ED, effector domain of the CAP family	0.002

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

 Score =  205 bits (523), Expect = 8e-58
 Identities = 115/439 (26%), Positives = 201/439 (45%), Gaps = 33/439 (7%)

Query: 36  AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
            +  + + L+LG+    L     +P    LL++G+  G          G       L   
Sbjct: 7   LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPP--------GLNLISPDLE-- 56

Query: 96  IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
           +DP+L L +FL  LLF     +++ +++R    +++LA P V+I+   +G       P  
Sbjct: 57  LDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-G 115

Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215
                + LLG +LS TDPVAV  + K +   K++ TI+EGESL+NDG  IV++++    +
Sbjct: 116 IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAAL 175

Query: 216 LGKS-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI----FNDTVIEIALTLAVSY 270
           LG   F  G  +      +LG + +GL  G      L  +    +   ++E  LTL +++
Sbjct: 176 LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235

Query: 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFIL 329
            A+  A+    VSG+L V+  G+      R      S +  L  FWE++ ++ N L+F+L
Sbjct: 236 AAYLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVL 294

Query: 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKE 388
            G  +   +L               L++  + V ++R   V  +L          L W+E
Sbjct: 295 LGAQLPLSLL--------LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346

Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQY 448
            + L W+G RG V+L+L+L +         +      L +F    ++  +L+V G T   
Sbjct: 347 RLFLSWAGPRGVVSLALALLIP------LELPGPARELILFIVFLVILFSLLVQGLTLPP 400

Query: 449 ILHLLDMDKLSATKRRILD 467
           +   L++ + SA  + IL 
Sbjct: 401 LAKKLEVSEESALAKEILG 419

Length = 429

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	Back alignment and domain information

>gnl\|CDD\|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form	Back alignment and domain information

>gnl\|CDD\|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain	Back alignment and domain information

>gnl\|CDD\|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1002
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
PLN03159		832	cation/H(+) antiporter 15; Provisional	99.97
PRK03562		621	glutathione-regulated potassium-efflux system prot	99.97
PRK03659		601	glutathione-regulated potassium-efflux system prot	99.97
PRK10669		558	putative cation:proton antiport protein; Provision	99.96
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.96
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	99.96
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	99.95
KOG0498		727	consensus K+-channel ERG and related proteins, con	99.85
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	99.83
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	99.79
KOG0500		536	consensus Cyclic nucleotide-gated cation channel C	99.79
KOG0499		815	consensus Cyclic nucleotide-gated cation channel C	99.78
PLN03192		823	Voltage-dependent potassium channel; Provisional	99.77
PRK09392		236	ftrB transcriptional activator FtrB; Provisional	99.76
PRK11753		211	DNA-binding transcriptional dual regulator Crp; Pr	99.74
KOG0614		732	consensus cGMP-dependent protein kinase [Signal tr	99.7
PRK11161		235	fumarate/nitrate reduction transcriptional regulat	99.67
PRK10402		226	DNA-binding transcriptional activator YeiL; Provis	99.67
KOG1113		368	consensus cAMP-dependent protein kinase types I an	99.66
COG0664		214	Crp cAMP-binding proteins - catabolite gene activa	99.64
TIGR03697		193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.63
PRK13918		202	CRP/FNR family transcriptional regulator; Provisio	99.58
PRK09391		230	fixK transcriptional regulator FixK; Provisional	99.58
cd00038		115	CAP_ED effector domain of the CAP family of transc	99.55
PF00027		91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.47
smart00100		120	cNMP Cyclic nucleotide-monophosphate binding domai	99.43
COG2905		610	Predicted signal-transduction protein containing c	99.37
KOG0614		732	consensus cGMP-dependent protein kinase [Signal tr	99.36
PLN02868		413	acyl-CoA thioesterase family protein	99.3
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.12
KOG1113		368	consensus cAMP-dependent protein kinase types I an	98.93
KOG0501		971	consensus K+-channel KCNQ [Inorganic ion transport	98.9
KOG2968		1158	consensus Predicted esterase of the alpha-beta hyd	98.49
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	98.48
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.93
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	97.8
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	97.68
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.67
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	97.59
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	97.57
PRK11832		207	putative DNA-binding transcriptional regulator; Pr	97.53
KOG2968		1158	consensus Predicted esterase of the alpha-beta hyd	97.52
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	97.49
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	97.49
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	97.38
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	97.27
PF04831		153	Popeye: Popeye protein conserved region; InterPro:	97.23
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	96.77
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.57
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.45
TIGR00698		335	conserved hypothetical integral membrane protein.	96.13
KOG3542		1283	consensus cAMP-regulated guanine nucleotide exchan	95.93
PRK10669		558	putative cation:proton antiport protein; Provision	95.39
PLN03159		832	cation/H(+) antiporter 15; Provisional	95.27
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.55
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	94.38
COG2855		334	Predicted membrane protein [Function unknown]	94.26
PRK03818		552	putative transporter; Validated	94.14
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	93.86
PRK04972		558	putative transporter; Provisional	93.62
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	93.43
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	93.1
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.66
COG0679		311	Predicted permeases [General function prediction o	91.14
COG0385		319	Predicted Na+-dependent transporter [General funct	90.95
KOG3542		1283	consensus cAMP-regulated guanine nucleotide exchan	90.44
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	90.27
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	90.07
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	89.8
COG3493		438	CitS Na+/citrate symporter [Energy production and	88.95
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	88.07
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	87.89
PRK05326		562	potassium/proton antiporter; Reviewed	87.0
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	86.82
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	86.29
TIGR00698		335	conserved hypothetical integral membrane protein.	84.85
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	84.62
COG2431		297	Predicted membrane protein [Function unknown]	83.68
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	82.76
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	82.34
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	82.0
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	81.42
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	81.34
COG2985		544	Predicted permease [General function prediction on	81.26
PRK04972		558	putative transporter; Provisional	80.7

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

Probab=100.00  E-value=2.7e-61  Score=568.31  Aligned_cols=503  Identities=24%  Similarity=0.355  Sum_probs=393.2

Q ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH
Q 001864           43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI  122 (1002)
Q Consensus        43 ~l~~~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l  122 (1002)
                      +++.+.....+++|+++|++++++++|+++|+.+.+.             ...++|+.++.+++|+++|.+|+++|++.+
T Consensus         6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l   72 (525)
T TIGR00831         6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL   72 (525)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            3444455567889999999999999999999865321             035789999999999999999999999999


Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhccccccchHHHHHHhhhcCCCcchhHhhhhhhhHHHH
Q 001864          123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG  202 (1002)
Q Consensus       123 ~~~~~~i~~la~~gv~i~~~~~g~~~~~~~~~~~~~~~alllgails~Tdpvav~~il~~l~~~~~l~~ll~gEsllnD~  202 (1002)
                      |+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus        73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~  150 (525)
T TIGR00831        73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG  150 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence            99999999999999999999999999884 3 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhhhccC
Q 001864          203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD  281 (1002)
Q Consensus       203 ~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~y~~a~e~lg  281 (1002)
                      +++++|.++..+..+ +..++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus       151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg  229 (525)
T TIGR00831       151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH  229 (525)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence            999999999988764 55666555555556678889999999999888887767788889999999999999999 7899


Q ss_pred             cchhHHHHHHHHHhhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc--chHH---HH
Q 001864          282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL  355 (1002)
Q Consensus       282 ~Sgilav~~aGl~l~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~l~Fi~~G~~i~~~~~~~~~~~~~~~--~~~~---~~  355 (1002)
                      .||++|+|++|++++++++. ..+++.+...+.||+.+++++|+++|+++|++++..............  ..+.   ..
T Consensus       230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (525)
T TIGR00831       230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA  309 (525)
T ss_pred             CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999997766 678888889999999999999999999999999763321100000000  0111   13


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHhhCCCCChHHHHHHhhhccchhHHHHHhhhhcccC-CCCCccccccccchhhhhh
Q 001864          356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG  432 (1002)
Q Consensus       356 ~~~~~~~~v~R~l~v~~~--~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~-~~~~~~~~~~~~~i~~~~~  432 (1002)
                      ++++..+...|+++++..  .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++   .++.+++.++
T Consensus       310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~  386 (525)
T TIGR00831       310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA  386 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence            344555666787665431  1222333456789999999999999999999999999763 333443   2678999999


Q ss_pred             hhhhhhhhhcccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHH-HHHHHHhhhhcCC
Q 001864          433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV  511 (1002)
Q Consensus       433 ~vvl~Tl~i~g~t~~~l~~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~l~~~~~~  511 (1002)
                      ++|++|+++||+|+|+++|++++++.++. +.....++..+.+.+.+.++++..+...+++..+.+ ++|..++++.+.+
T Consensus       387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (525)
T TIGR00831       387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD  465 (525)
T ss_pred             HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999877643 333445667778888888888766554433223333 3455554433221


Q ss_pred             CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001864          512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEG  569 (1002)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~r~r~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~  569 (1002)
                      .. ...  + +...+.+..+++|++++++||+.+.+++++|+||+++++.+++.+|..
T Consensus       466 ~~-~~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~  519 (525)
T TIGR00831       466 GE-EKI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK  519 (525)
T ss_pred             cc-cch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence            10 000  0 000111224578889999999999999999999999999998888653

This model is specific for the bacterial members of this family.

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>PRK09392 ftrB transcriptional activator FtrB; Provisional	Back alignment and domain information

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional	Back alignment and domain information

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional	Back alignment and domain information

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional	Back alignment and domain information

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	Back alignment and domain information

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial	Back alignment and domain information

>PRK13918 CRP/FNR family transcriptional regulator; Provisional	Back alignment and domain information

>PRK09391 fixK transcriptional regulator FixK; Provisional	Back alignment and domain information

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	Back alignment and domain information

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]	Back alignment and domain information

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PLN02868 acyl-CoA thioesterase family protein	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK11832 putative DNA-binding transcriptional regulator; Provisional	Back alignment and domain information

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>COG0679 Predicted permeases [General function prediction only]	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG2431 Predicted membrane protein [Function unknown]	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1002
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
2pqq_A		149	Putative transcriptional regulator; APC7345, strep	3e-07
3d0s_A		227	Transcriptional regulatory protein; CAMP receptor	5e-07
3gyd_A		187	CNMP-BD protein, cyclic nucleotide-binding domain;	1e-06
3mdp_A		142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	2e-06
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	8e-06
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	1e-04
4ev0_A		216	Transcription regulator, CRP family; CAMP binding,	2e-05
2z69_A		154	DNR protein; beta barrel, dimerization helix, tran	5e-05
3fx3_A		237	Cyclic nucleotide-binding protein; helix_TURN_heli	5e-05
3e97_A		231	Transcriptional regulator, CRP/FNR family; YP_6044	5e-05
3shr_A		299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-04
3dv8_A		220	Transcriptional regulator, CRP/FNR family; cyclic	1e-04
3tnp_B		416	CAMP-dependent protein kinase type II-beta regula	1e-04
3of1_A		246	CAMP-dependent protein kinase regulatory subunit;	3e-04
3dkw_A		227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	4e-04
4din_B		381	CAMP-dependent protein kinase type I-beta regulat	7e-04
2gau_A		232	Transcriptional regulator, CRP/FNR family; structu	7e-04
1o5l_A		213	Transcriptional regulator, CRP family; TM1171, str	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.1 bits (168), Expect = 6e-12
 Identities = 94/651 (14%), Positives = 188/651 (28%), Gaps = 187/651 (28%)

Query: 304 KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 357
           K     +L  FW +++     +  F+       E +L  +  F     +        +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 358 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 406
           +YI  Q  RL+    ++             LR     L   + +++   G+ G+    ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167

Query: 407 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRIL 466
           L V  S             +       I +L L    S    +  L  +           
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKL----------- 205

Query: 467 DYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKR-------YIRCLNDLEGVPMHPHSAS 519
                  ++  + +  D   + +L         R       Y  CL  L  V       +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNA 256

Query: 520 ETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCD 579
           +  ++ +      +  ++L  +             T+        S      ++ +    
Sbjct: 257 KAWNAFN------LSCKIL--L------------TTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 580 WRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE------FACSICAAFLRAHKIARQ 633
              L  +       K+L     PQ L         E         SI A  +R       
Sbjct: 297 --TLTPDEVKSLLLKYLDCR--PQDL-------PREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 634 QLHDFIGDSGIASVVIEES--KVEGEDARK-------FLEDVRVNFP-QVLHVV---KTR 680
                  D    + +IE S   +E  + RK       F     +  P  +L ++     +
Sbjct: 346 NWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIK 401

Query: 681 QVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDL 737
                V+N L  Y        L+E+  KE  + +   +  +LK            K+ + 
Sbjct: 402 SDVMVVVNKLHKY-------SLVEKQPKESTISIPS-IYLELKV-----------KLENE 442

Query: 738 ISAHPLLRELPPSVREPLELSTKEIMK--------------LSGVTLYREGSKPSGIWLI 783
            + H  + +       P    + +++               L  +      +    ++L 
Sbjct: 443 YALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498

Query: 784 SNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKIL 843
            +   ++  + IR  H        GS L   + L  K Y            +  ++D   
Sbjct: 499 -D--FRFLEQKIR--HDSTAWNASGSILNTLQQL--KFYKP----------YICDNDPKY 541

Query: 844 SILRSDPAVEDFLWQQSAIAL----SRILLPQIFEKLTMQDMRALIAERSK 890
             L +   + DFL +     +    + +L  +I   L M +  A+  E  K
Sbjct: 542 ERLVNA--ILDFLPKIEENLICSKYTDLL--RI--AL-MAEDEAIFEEAHK 585

PyMOL of 1vt4

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149	Back alignment and structure

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227	Back alignment and structure

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187	Back alignment and structure

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291	Back alignment and structure

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216	Back alignment and structure

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154	Back alignment and structure

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237	Back alignment and structure

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231	Back alignment and structure

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299	Back alignment and structure

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220	Back alignment and structure

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416	Back alignment and structure

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246	Back alignment and structure

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227	Back alignment and structure

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381	Back alignment and structure

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232	Back alignment and structure

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1002
d1vp6a_		133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	3e-07
d1o7fa2		155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	3e-06
d1ne6a1		136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	1e-05
d1ne6a2		132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	5e-05
d1cx4a2		147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	0.001
d1o7fa3		124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	0.003

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 731 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790
           F +   L++A PL ++L P+V   +  + +     +G  + R G     ++ +  G V  
Sbjct: 6   FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65

Query: 791 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 850
                            G+  G   ++ G+P  + +   + V    + S     +  S P
Sbjct: 66  A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118

Query: 851 AVEDFLWQQSA 861
            + +   + + 
Sbjct: 119 EIAEIFRKTAL 129

PyMOL of d1vp6a_

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155	Back information, alignment and structure

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136	Back information, alignment and structure

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132	Back information, alignment and structure

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147	Back information, alignment and structure

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1002
d1q3ea_		193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.92
d1cx4a2		147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.85
d1cx4a1		136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.83
d1ne6a2		132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.82
d1zyba2		147	Probable transcription regulator BT4300, N-termina	99.82
d1ne6a1		136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.8
d1vp6a_		133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.8
d2gaua2		142	Transcriptional regulator PG0396, N-terminal domai	99.8
d2oz6a2		134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.77
d1i5za2		132	Catabolite gene activator protein, N-terminal doma	99.77
d1o7fa2		155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.76
d3e5ua2		139	Chlorophenol reduction protein CprK {Desulfitobact	99.76
d1ft9a2		132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.74
d1o7fa3		124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.72
d1o5la1		129	CRP-like transcriptional regulator TM1171, N-termi	99.72
d1wgpa_		137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.71
d2zcwa2		112	Transcriptional regulator TTHA1359, N-terminal dom	99.53
d2bgca2		131	Listeriolysin regulatory protein PrfA, N-terminal	88.48

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=9.8e-24  Score=169.35  Aligned_cols=188  Identities=16%  Similarity=0.238  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
Q ss_conf             999998413689999986689999999999999999806530775-6766999999999874499998888945687409
Q 001864          663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH  741 (1002)
Q Consensus       663 L~~l~~~~p~i~~~ikt~~~~~~ll~~~~~~~~~l~~~G~l~e~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~  741 (1002)
                      -..++.++.++.++|+.++++..+..++++|+++.|+....++.+ ...+++.+...+.....          .++++++
T Consensus         4 ~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~----------~~~l~~~   73 (193)
T d1q3ea_           4 RRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNC----------RKLVASM   73 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH----------HHHHHCC
T ss_conf             899999999999999984999999999999999986503665999998799223489999999----------9998202


Q ss_pred             CCCCCCCHHHHHHHHHCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHCCCC
Q ss_conf             98999996328886303589997479755538888785899940289999960799537831117999131323206997
Q 001864          742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP  821 (1002)
Q Consensus       742 ~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~eGd~~~~iyiI~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~  821 (1002)
                      |+|++++++.+..++..++++.|.||++|+++||+++++|+|.+|.|++...+  ++ .  ..+++|++|||.+++.+.+
T Consensus        74 ~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~--~~-~--~~l~~G~~fGe~~~~~~~~  148 (193)
T d1q3ea_          74 PLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG--NK-E--MKLSDGSYFGEICLLTRGR  148 (193)
T ss_dssp             HHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C--CC-E--EEECTTCEECHHHHHHCSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEEEEEECCC--CC-E--EEECCCEEEEEEECCCCCC
T ss_conf             47776129999999999788762268431035887750057512057762178--62-1--4650653655420247774


Q ss_pred             CEEEEEECCEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             22389982439999970999999993294999999999999999
Q 001864          822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS  865 (1002)
Q Consensus       822 ~~~sv~A~t~~~l~~I~~~~l~~ll~~~p~l~~~l~~~~~~~l~  865 (1002)
                      +.++++|.++|+++.|++++|.++++++|.+...+...+..|+.
T Consensus       149 ~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         149 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             CCCCCEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_conf             21242245746999976999999998799999999999999808

PyMOL of d1q3ea_

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}	Back information, alignment and structure

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}	Back information, alignment and structure

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}	Back information, alignment and structure