Citrus Sinensis ID: 001874

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-

MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS

ccccccccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccHHccHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHcccccHHHHHHHcccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHEEEHEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHcHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccHccccccHHcccccccccEEcccccHHcHHHccEEEccccccEEEcccccccEEEEEcccccccHEEEEEccccccccccccccccccccccHHcccccccccccccEEcc

MAATMVSSAGGLLAMLNeshpslklhaLSNLNSFvdqfwpeistsvpiilyedeeFDQHQRQLAALLVSKVFYYLGELNDSLsyalgagslfdvsedsDYVHTLLAKAIDEYASIKSkaaesndeaanvdPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAItrsdnvhgtLSYCINVSHSFVNRREYRREVLRLLVKVYQklpspdylsicqclmfldepeGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNvrdhlpvpktqplqtvqpgsndppsaqndsstaedvqmnegtpasnvnvqdedpkEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSAtaglgvihrghlqqgrslmapylpqggaggggspyseggALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGlaalgtadediyDDIKNVlytdsavageAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTrdqdpilryGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVlysepeqtpRIVSLLSEsynphvryGAALAVGISCAGTGLSEAISllepltsdvvDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFIslsfsptaliglnydlkvprfeflshakpslfeypkpttvptttsavklpaAVLSTSAKAKARAKKEAEQKEKEKATAEktdlssagkgkssnekdgdsmqvdappekkaepepsfeilinparvvpAQEKFIKFledsryvpvksapsgfvllrdlrpnepevlsltdapsstqspagggsttgqqgsasamavdeepqppapfeyts

MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSkaaesndeaanvDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAItrsdnvhgtlsycinvshsfvnrrEYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQplqtvqpgsndppSAQNDSSTAEDVQMNEgtpasnvnvqdedpKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGfvlysepeqtPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINeandsrvgtfRRQLEKIILDKHEDTMSKMGAILAsgildaggRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKeaeqkekekataektdlssagkgkssnekdgdsmqVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKfledsryvpvKSAPSGFVLLRDLRPNEPEVLSltdapsstqspagGGSTTGQQGSASAmavdeepqppapfeyts

MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNrreyrrevlrllvkvyQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPylpqggaggggspyseggalYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHgaclglglaalgtaDEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSakakarakkeaeqkekekataekTDLSSAGKGKSSNEKDGDSMQVDappekkaepepSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSLTDapsstqspagggsttgqqgsasaMAVDEEPQPPAPFEYTS

**********************LKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASI****************RLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL***************************************************VIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLP**********YSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYP*********************************************************************************EILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLR******************************************************

*****VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYAS*****************RLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVP**************************************************YAERLNKIKGILSGETSIQLTLQFLYSHNKSDL*************NSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLP***********SEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFE*****************AAVLST****************************************************************NPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVL************************************PA*FEYT*

MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIK************VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPL************************MNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVL*********************************************************PEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSL******************************************

*********GGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLP************************************************KEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGG*GGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTT***TTSAVKLPAAVLSTSAKAKARAKK***********************************************PSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSLTDA*******************************P*******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIILYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLxxxxxxxxxxxxxxxxxxxxxAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1001	2.2.26 [Sep-21-2011]
Q3TXS7		953	26S proteasome non-ATPase	yes	no	0.913	0.959	0.503	0.0
O88761		953	26S proteasome non-ATPase	yes	no	0.904	0.949	0.505	0.0
Q99460		953	26S proteasome non-ATPase	yes	no	0.904	0.949	0.505	0.0
Q5F418		955	26S proteasome non-ATPase	yes	no	0.918	0.962	0.501	0.0
Q5R5S4		953	26S proteasome non-ATPase	yes	no	0.904	0.949	0.505	0.0
Q9V3P6		1020	26S proteasome non-ATPase	yes	no	0.930	0.912	0.476	0.0
Q54JM5		975	26S proteasome non-ATPase	yes	no	0.952	0.977	0.453	0.0
O74762		965	26S proteasome regulatory	yes	no	0.937	0.972	0.446	0.0
Q75CF3		930	26S proteasome regulatory	yes	no	0.895	0.963	0.398	0.0
P32565		945	26S proteasome regulatory	yes	no	0.889	0.941	0.394	0.0

>sp\|Q3TXS7\|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1	Back alignment and function desciption

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/964 (50%), Positives = 657/964 (68%), Gaps = 50/964 (5%)

Query: 5   MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQ 62
           M++SA G++++L+E  P LK  AL  LN+ V+ FW EIS SV  I  LYEDE F    RQ
Sbjct: 1   MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58

Query: 63  LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 122
            AAL+ SKVFY+LG   +SL+YALGAG LF+V+++S+YV T++AK ID Y     +  E+
Sbjct: 59  FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115

Query: 123 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 178
            D    E   +D RLE IV +M  +C+ D KY+QA+GIA+E RRLD  E+ I  S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175

Query: 179 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 238
            L+Y + +  S +  +++R +VLR+LVK+Y  L  PD++++CQCL+FLD+P+ V  ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEK 235

Query: 239 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSA 295
           L++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P +
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGS 290

Query: 296 QNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 355
           + DS   E  +      A        +PK+    + L  IK ILSGE +I+L LQFL  +
Sbjct: 291 EKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345

Query: 356 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 415
           N +DL+ILK  K +V  RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403

Query: 416 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 475
           ATA LGVIH+GH ++   LMA YLP+  + G  S Y EGG LYALGLIHANHG  I  +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461

Query: 476 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 535
            + L++ + ++++HG  LGLGLAA+GTA +D+YD +K  LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521

Query: 536 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 594
           G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR  
Sbjct: 522 GSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581

Query: 595 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 654
           GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+  PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641

Query: 655 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 714
           ESYNPHVRYGAA+A+GI CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E 
Sbjct: 642 ESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701

Query: 715 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 774
              +V  FR+   K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H  + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761

Query: 775 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 834
           G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P  VP 
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821

Query: 835 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 894
                K+  AVLS                     TA+        + K   + + D  + 
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861

Query: 895 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNE 953
               EKK EPEP+F++L NPARV+PAQ K +   E  RY P K  +  G ++L+D   + 
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKDTSEDV 921

Query: 954 PEVL 957
            E++
Sbjct: 922 EELV 925

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Mus musculus (taxid: 10090)

>sp\|O88761\|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1	Back alignment and function description

>sp\|Q99460\|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2	Back alignment and function description

>sp\|Q5F418\|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R5S4\|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1	Back alignment and function description

>sp\|Q9V3P6\|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1	Back alignment and function description

>sp\|Q54JM5\|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1	Back alignment and function description

>sp\|O74762\|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1	Back alignment and function description

>sp\|Q75CF3\|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN2 PE=3 SV=1	Back alignment and function description

>sp\|P32565\|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1001
225465653		1005	PREDICTED: 26S proteasome non-ATPase reg	0.996	0.992	0.900	0.0
449442377		1002	PREDICTED: 26S proteasome non-ATPase reg	0.995	0.994	0.890	0.0
224140807		1006	predicted protein [Populus trichocarpa]	0.997	0.992	0.889	0.0
147862866		978	hypothetical protein VITISV_021939 [Viti	0.971	0.993	0.887	0.0
224060389		1004	predicted protein [Populus trichocarpa]	0.997	0.994	0.885	0.0
356524636		1006	PREDICTED: 26S proteasome non-ATPase reg	0.998	0.993	0.880	0.0
357521445		1001	26S proteasome non-ATPase regulatory sub	0.994	0.994	0.878	0.0
297823053		1002	hypothetical protein ARALYDRAFT_482209 [	0.993	0.992	0.859	0.0
15225733		1004	26S proteasome regulatory subunit N2 [Ar	0.995	0.992	0.861	0.0
356513024		1006	PREDICTED: 26S proteasome non-ATPase reg	0.998	0.993	0.874	0.0

>gi\|225465653\|ref\|XP_002270542.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Vitis vinifera] gi\|296085308\|emb\|CBI29040.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1811 bits (4690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 906/1006 (90%), Positives = 938/1006 (93%), Gaps = 9/1006 (0%)

Query: 3    ATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQ 60
            ATMVSSAGGLLAMLNESHP LK HALSNLN FVD FWPEISTSVPII  LYEDEEFDQ Q
Sbjct: 2    ATMVSSAGGLLAMLNESHPMLKFHALSNLNIFVDYFWPEISTSVPIIESLYEDEEFDQRQ 61

Query: 61   RQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAA 120
            RQLAALLVSKVFYYLGELNDSLSYALGAG LFDVSEDSDYVHTLLAKAIDEYAS+KS+A 
Sbjct: 62   RQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLKSRAG 121

Query: 121  ESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTL 180
            ESNDEA  VDPRLEAIVERMLDKCI DG+YQQAMG+A+ECRRLDKLEEAITRSDNVHGTL
Sbjct: 122  ESNDEAL-VDPRLEAIVERMLDKCIVDGRYQQAMGMAVECRRLDKLEEAITRSDNVHGTL 180

Query: 181  SYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLL 240
            SYCIN+SHSFVNRREYRREVLR LVKVYQKLPSPDYLSICQCLMFLDEPEGV SILEKLL
Sbjct: 181  SYCINISHSFVNRREYRREVLRCLVKVYQKLPSPDYLSICQCLMFLDEPEGVASILEKLL 240

Query: 241  RSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQN-DS 299
            RSENKDDALLAFQIAFDLVENEHQAFLLNVRD L  PK+QP ++VQPG+NDP +AQN + 
Sbjct: 241  RSENKDDALLAFQIAFDLVENEHQAFLLNVRDRLSNPKSQPSESVQPGNNDPDTAQNGNP 300

Query: 300  STAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSD 359
              +EDV+M +G+ AS  ++ + DP E +YAERL KIKGILSGETSIQLTLQFLYSHNKSD
Sbjct: 301  GASEDVEMTDGSHASTGSLLEMDPNEALYAERLTKIKGILSGETSIQLTLQFLYSHNKSD 360

Query: 360  LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG 419
            LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG
Sbjct: 361  LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG 420

Query: 420  LGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL 479
            LGVIHRGHLQQGRSLMAPYLPQ GAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL
Sbjct: 421  LGVIHRGHLQQGRSLMAPYLPQSGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL 480

Query: 480  RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS 539
            RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS
Sbjct: 481  RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS 540

Query: 540  EKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 599
            EKA EML YAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL
Sbjct: 541  EKASEMLAYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 600

Query: 600  ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 659
            ALAY GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP
Sbjct: 601  ALAYQGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 660

Query: 660  HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV 719
            HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI+E +DSRV
Sbjct: 661  HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISETSDSRV 720

Query: 720  GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVF 779
            GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDK+TAVVGL+VF
Sbjct: 721  GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVTAVVGLAVF 780

Query: 780  SQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAV 839
            SQFWYWYPLIYFISLSFSPTA IGLNYDLKVP FEFLSHAKPSLFEYP+PTTVPT TS V
Sbjct: 781  SQFWYWYPLIYFISLSFSPTAFIGLNYDLKVPTFEFLSHAKPSLFEYPRPTTVPTATSTV 840

Query: 840  KLPAAVLSTSAKAKARAKKEAEQK---EKEKAT-AEKTDLSSAGKGKSSNEKDGDSMQVD 895
            KLP AVLSTSAKAKARAKKEAEQK   EK   T +  +   S+GKGKS+ EKDGDSMQVD
Sbjct: 841  KLPTAVLSTSAKAKARAKKEAEQKVNAEKSAGTESSSSTGQSSGKGKSTTEKDGDSMQVD 900

Query: 896  APPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPE 955
            +P EKK EPE SFEIL NPARVVPAQEKFIKFLE+SRYVPVK APSGFVLLRDLRP EPE
Sbjct: 901  SPSEKKVEPEASFEILTNPARVVPAQEKFIKFLEESRYVPVKLAPSGFVLLRDLRPTEPE 960

Query: 956  VLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001
            VLSLTD PSST SPA GGS TGQQ +ASAMAVDEEPQPP  FEYTS
Sbjct: 961  VLSLTDTPSSTASPA-GGSATGQQAAASAMAVDEEPQPPQAFEYTS 1005

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449442377\|ref\|XP_004138958.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Cucumis sativus] gi\|449526720\|ref\|XP_004170361.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224140807\|ref\|XP_002323770.1\| predicted protein [Populus trichocarpa] gi\|222866772\|gb\|EEF03903.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147862866\|emb\|CAN81101.1\| hypothetical protein VITISV_021939 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224060389\|ref\|XP_002300175.1\| predicted protein [Populus trichocarpa] gi\|222847433\|gb\|EEE84980.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356524636\|ref\|XP_003530934.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357521445\|ref\|XP_003631011.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi\|355525033\|gb\|AET05487.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297823053\|ref\|XP_002879409.1\| hypothetical protein ARALYDRAFT_482209 [Arabidopsis lyrata subsp. lyrata] gi\|297325248\|gb\|EFH55668.1\| hypothetical protein ARALYDRAFT_482209 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15225733\|ref\|NP_180832.1\| 26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gi\|2914700\|gb\|AAC04490.1\| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gi\|20466790\|gb\|AAM20712.1\| 26S proteasome regulatory subunit [Arabidopsis thaliana] gi\|330253636\|gb\|AEC08730.1\| 26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356513024\|ref\|XP_003525214.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1001
TAIR\|locus:2046402		1004	AT2G32730 [Arabidopsis thalian	0.995	0.992	0.778	0.0
TAIR\|locus:2010672		1001	AT1G04810 [Arabidopsis thalian	0.990	0.990	0.767	0.0
ZFIN\|ZDB-GENE-040426-810		959	psmd1 "proteasome (prosome, ma	0.920	0.960	0.469	2.1e-226
UNIPROTKB\|G3V8B6		953	Psmd1 "26S proteasome non-ATPa	0.826	0.867	0.498	1.5e-221
UNIPROTKB\|E1C5P3		958	PSMD1 "26S proteasome non-ATPa	0.826	0.863	0.499	2e-221
MGI\|MGI:1917497		953	Psmd1 "proteasome (prosome, ma	0.826	0.867	0.498	4.1e-221
UNIPROTKB\|A7MBA2		953	PSMD1 "Uncharacterized protein	0.826	0.867	0.498	5.2e-221
UNIPROTKB\|F1NUT6		955	PSMD1 "26S proteasome non-ATPa	0.826	0.865	0.5	8.5e-221
RGD\|621669		953	Psmd1 "proteasome (prosome, ma	0.826	0.867	0.497	8.5e-221
UNIPROTKB\|Q99460		953	PSMD1 "26S proteasome non-ATPa	0.826	0.867	0.497	1.8e-220

TAIR\|locus:2046402 AT2G32730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3876 (1369.5 bits), Expect = 0., P = 0.
 Identities = 786/1009 (77%), Positives = 834/1009 (82%)

Query:     1 MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQ 58
             MA  MVSSAGGLLAMLNE HP LKLHALSNLN+ VDQFWPEISTSVPII  LYEDEEFD 
Sbjct:     1 MATPMVSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDL 60

Query:    59 HQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSK 118
             HQRQLAALLVSKVFYYLGELNDSLSYALGAG LFDVSEDSDYVHTLLAKAIDEYAS++SK
Sbjct:    61 HQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRSK 120

Query:   119 AAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 178
             A ESN E  ++DPRLEAIVERML KCI+DGKYQQAMGIAIECRRLDKLEEAI +SDNV G
Sbjct:   121 AVESN-EMVDIDPRLEAIVERMLGKCISDGKYQQAMGIAIECRRLDKLEEAIIKSDNVQG 179

Query:   179 TLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEK 238
             TLSYCINVSHSFVN                QKLPSPDYLSICQCLMFLDEP+GV SILEK
Sbjct:   180 TLSYCINVSHSFVNRREYRHEVLSLLVKVYQKLPSPDYLSICQCLMFLDEPQGVASILEK 239

Query:   239 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQND 298
             LLRSENKDDALLA QIAFDLVENEHQAFLL+VRD LP PKT+ ++  Q  + +   A N+
Sbjct:   240 LLRSENKDDALLALQIAFDLVENEHQAFLLSVRDRLPAPKTRAVEATQ--AVETTIAPNE 297

Query:   299 SSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKS 358
             + +  DVQM + TPA  + V + DP +  YAERL KIKGILSGETSIQLTLQFLYSHNKS
Sbjct:   298 NPSG-DVQMADETPAQTI-VHETDPVDATYAERLTKIKGILSGETSIQLTLQFLYSHNKS 355

Query:   359 DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA 418
             DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA
Sbjct:   356 DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA 415

Query:   419 GLGVIHRGHLQQGRSLMAPXXXXXXXXXXXXXXXXXXXXYALGLIHANHGEGIKQFLRDS 478
             GLGVIHRGHLQQGRSLMAP                    YALGLIHANHGEGIKQFLRDS
Sbjct:   416 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDS 475

Query:   479 LRSTNVEVIQHXXXXXXXXXXXXXXDEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 538
             LRSTNVEVIQH              DE+IYDD+K+VLYTDSAVAGEAAGISMGLL+VGTA
Sbjct:   476 LRSTNVEVIQHGACLGLGLSALGTADEEIYDDVKSVLYTDSAVAGEAAGISMGLLLVGTA 535

Query:   539 SEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYA 598
             +EKA EML YAHETQHEKIIRGLALGIALTVYGREE ADTLIEQMTRDQDPI+RYGGMYA
Sbjct:   536 TEKASEMLAYAHETQHEKIIRGLALGIALTVYGREEGADTLIEQMTRDQDPIIRYGGMYA 595

Query:   599 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYN 658
             LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYS+PEQTPRIVSLLSESYN
Sbjct:   596 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESYN 655

Query:   659 PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSR 718
             PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI+EA+DSR
Sbjct:   656 PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSR 715

Query:   719 VGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSV 778
             VG FRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDK+TAV+GL+V
Sbjct:   716 VGVFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVTAVIGLAV 775

Query:   779 FSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSA 838
             FSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFEYPKPTTVPT  +A
Sbjct:   776 FSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFEYPKPTTVPTANTA 835

Query:   839 VKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXX---TDLSSAGKGKSSNEKDGDSMQVD 895
             VKLP AVLSTS                           + S +GKGK+S EK+GDSMQVD
Sbjct:   836 VKLPTAVLSTSVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKGKASTEKEGDSMQVD 895

Query:   896 XXXXXXXXXXX---SFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPN 952
                           +FEIL+NPARVVPAQEK+IK L+DSRYVPVK APSGFVLL+DLR +
Sbjct:   896 SPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVKLAPSGFVLLKDLREH 955

Query:   953 EPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEYTS 1001
             EPEVLSLTD                       MAVD+EPQPP  FEY S
Sbjct:   956 EPEVLSLTDAPTSTASPATGTAAAAQGTPASAMAVDDEPQPPQAFEYAS 1004

GO:0000502 "proteasome complex" evidence=IEA;IDA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR\|locus:2010672 AT1G04810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-810 psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V8B6 Psmd1 "26S proteasome non-ATPase regulatory subunit 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C5P3 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1917497 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MBA2 PSMD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NUT6 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|621669 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q99460 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V3P6	PSMD1_DROME	No assigned EC number	0.4767	0.9300	0.9127	yes	no
Q6FIP2	RPN2_CANGA	No assigned EC number	0.3807	0.8781	0.9341	yes	no
Q75CF3	RPN2_ASHGO	No assigned EC number	0.3987	0.8951	0.9634	yes	no
O74762	RPN2_SCHPO	No assigned EC number	0.4464	0.9370	0.9720	yes	no
Q99460	PSMD1_HUMAN	No assigned EC number	0.5057	0.9040	0.9496	yes	no
Q18115	PSMD1_CAEEL	No assigned EC number	0.3219	0.9000	0.9336	yes	no
Q5F418	PSMD1_CHICK	No assigned EC number	0.5015	0.9180	0.9623	yes	no
O88761	PSMD1_RAT	No assigned EC number	0.5057	0.9040	0.9496	yes	no
Q3TXS7	PSMD1_MOUSE	No assigned EC number	0.5031	0.9130	0.9590	yes	no
Q5R5S4	PSMD1_PONAB	No assigned EC number	0.5057	0.9040	0.9496	yes	no
Q54JM5	PSMD1_DICDI	No assigned EC number	0.4531	0.9520	0.9774	yes	no
P32565	RPN2_YEAST	No assigned EC number	0.3944	0.8891	0.9417	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031868001	SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (1005 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014791001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)	•	•	•	•		0.955
	GSVIVG00010470001	SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)	•	•	•	•		0.934
	GSVIVG00036762001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (440 aa)	•	•	•	•		0.887
	GSVIVG00015634001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (365 aa)	•	•	•	•		0.862
	GSVIVG00018640001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (629 aa)	•	•	•	•	•	0.852
	GSVIVG00019352001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (320 aa)	•	•	•	•		0.836
	GSVIVG00030725001	RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (250 aa)	•	•	•	•		0.818
	GSVIVG00006696001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (267 aa)		•	•	•		0.807
	GSVIVG00023752001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotg [...] (205 aa)	•	•	•	•		0.803
	GSVIVG00034204001	RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (479 aa)	•	•		•		0.778

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1001
COG5116		926	COG5116, RPN2, 26S proteasome regulatory complex c	0.0
COG5110		881	COG5110, RPN1, 26S proteasome regulatory complex c	1e-19
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	5e-08
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	3e-05
pfam01851		35	pfam01851, PC_rep, Proteasome/cyclosome repeat	2e-04
pfam01851		35	pfam01851, PC_rep, Proteasome/cyclosome repeat	2e-04
pfam12569		516	pfam12569, NARP1, NMDA receptor-regulated protein	0.001

>gnl\|CDD\|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  834 bits (2155), Expect = 0.0
 Identities = 372/967 (38%), Positives = 538/967 (55%), Gaps = 83/967 (8%)

Query: 4   TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQR 61
             +++A  L A+L E     +  AL  +N+ VDQ WPEIS  +  I  LY+D+ FD   R
Sbjct: 1   MSMTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFDP--R 58

Query: 62  QLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAE 121
           ++AAL +SKV+Y LGE   ++ YAL AG  F V + S Y  T++ K+I+ Y      +A 
Sbjct: 59  EMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVH-MMDSAY 117

Query: 122 SNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLS 181
              +   +D  L+ ++E +  KC+ D +    +GIA E  RLD +E+ +    N    ++
Sbjct: 118 IGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYL-SDGNDCDIIN 176

Query: 182 YCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 241
           Y ++++ + V    +R+E+LR+L ++    P PDY  + + +++L++ E   +++EKL++
Sbjct: 177 YLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236

Query: 242 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSST 301
              ++D LL  Q+AFDL ++  Q  L    + L                           
Sbjct: 237 ---ENDLLLYAQVAFDLEDSASQEIL----EILVTELV---------------------- 267

Query: 302 AEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLL 361
                            Q  D            +  ILSGE + +    FL   N +D  
Sbjct: 268 ----------------AQGYDQA----------VMSILSGEFTKKYLGAFLLEKNNTDFK 301

Query: 362 ILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLG 421
            L + K S+  + S  H A   AN+ M+ GT+ D+F R NLDWL +A+NWAKF+ATA LG
Sbjct: 302 FLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYRNNLDWLGKASNWAKFTATASLG 361

Query: 422 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 481
           VIH G+   G  ++ PYLP   A    S   EGGALYALGLI A  G    ++L +    
Sbjct: 362 VIHLGNSNPGYEILKPYLPSEVAS---SRQKEGGALYALGLIKAGFGREDTEYLLEYFLD 418

Query: 482 T---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 538
           T       + +G CLG+GL  +G+A+ +IY+ +K +L  D A+ GEAA   MGLLM+GT 
Sbjct: 419 TEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTW 478

Query: 539 SEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 597
           S +A  +M TYA ETQHE+I RGL +G AL +YGR+E AD  I ++  D+D ILRY G++
Sbjct: 479 SVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVF 538

Query: 598 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 657
           +LALAY GT N   +  LLH+AVSD +DDVRR AV+ALGFV   + +     V LLSES+
Sbjct: 539 SLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESH 598

Query: 658 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 717
           N HVR G A+A+GI+CAGTG   A  +LE L  D  DFVRQ A+IA+ M+++Q N   + 
Sbjct: 599 NFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658

Query: 718 RVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLS 777
            V    ++  ++I+DKHE  ++K+GA+LA GI +AGGRNVTI L + T       +VGL 
Sbjct: 659 NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNATGILSADRIVGLV 718

Query: 778 VFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTS 837
           +F Q+WYW+PLI+F+SLSF PT +IG+     +P+F F    +   FEYP+     +  S
Sbjct: 719 LFLQYWYWFPLIHFVSLSFLPTTVIGIRGSQAIPKFCFNEDLEEEEFEYPRMYEEASGKS 778

Query: 838 AVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAE---KTDLSSAGKGKSSNEKDGD-SMQ 893
             K+  AVLST+ KA ARAK    QK KEK   +   K +  S                 
Sbjct: 779 VRKVNTAVLSTTIKAAARAK----QKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKG 834

Query: 894 VDAPP---EKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLR 950
           +DAP     KK +P      + N  R++P Q ++I F++D R+VPV+    G V+LRD  
Sbjct: 835 IDAPAILNVKKKKPYK----VDNMTRILPQQSRYISFIKDDRFVPVRKFKGGVVVLRDRE 890

Query: 951 PNEPEVL 957
           P EP  L
Sbjct: 891 PKEPVAL 897

Length = 926

>gnl\|CDD\|227441 COG5110, RPN1, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat	Back alignment and domain information

>gnl\|CDD\|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat	Back alignment and domain information

>gnl\|CDD\|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1001
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	99.97
PRK09687		280	putative lyase; Provisional	99.55
PRK09687		280	putative lyase; Provisional	99.55
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	99.5
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.33
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.22
TIGR02270		410	conserved hypothetical protein. Members are found	98.8
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.78
TIGR02270		410	conserved hypothetical protein. Members are found	98.78
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.66
KOG0567		289	consensus HEAT repeat-containing protein [General	98.55
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.21
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.12
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	98.08
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.07
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.99
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.94
KOG0567		289	consensus HEAT repeat-containing protein [General	97.92
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.65
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.58
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.55
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.51
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.46
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.15
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.04
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.94
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.92
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.9
PRK11788		389	tetratricopeptide repeat protein; Provisional	96.84
PTZ00429		746	beta-adaptin; Provisional	96.58
PRK11788		389	tetratricopeptide repeat protein; Provisional	96.53
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.07
PTZ00429		746	beta-adaptin; Provisional	96.01
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	95.92
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	95.89
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.8
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	95.79
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	95.53
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	95.3
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	94.96
COG5096		757	Vesicle coat complex, various subunits [Intracellu	94.61
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	94.52
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.46
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.2
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	94.07
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.06
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	93.55
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.51
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.33
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	93.3
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	93.11
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	93.06
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	92.82
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	92.68
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.64
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	92.5
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	92.46
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	92.31
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.18
PF05004		309	IFRD: Interferon-related developmental regulator (	91.61
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	91.15
PRK12370		553	invasion protein regulator; Provisional	91.06
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	90.62
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	90.43
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	89.78
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	89.68
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	89.27
PRK12370		553	invasion protein regulator; Provisional	89.11
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	89.07
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	88.71
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	88.57
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	88.17
KOG1824		1233	consensus TATA-binding protein-interacting protein	88.11
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.03
PLN03077		857	Protein ECB2; Provisional	87.89
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	87.87
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.67
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	86.97
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	86.97
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	86.68
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	86.2
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	86.03
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	85.88
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.87
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	85.27
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.23
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	85.13
PRK06743		254	flagellar motor protein MotP; Reviewed	84.69
cd06561		197	AlkD_like A new structural DNA glycosylase. This d	84.56
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	84.54
KOG1242		569	consensus Protein containing adaptin N-terminal re	84.02
KOG2025		892	consensus Chromosome condensation complex Condensi	83.64
KOG2259		823	consensus Uncharacterized conserved protein [Funct	83.08
PLN03218		1060	maturation of RBCL 1; Provisional	82.97
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	81.59
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	81.28
PF06685		249	DUF1186: Protein of unknown function (DUF1186); In	80.31
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	80.19

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.5e-243  Score=2051.16  Aligned_cols=921  Identities=64%  Similarity=1.015  Sum_probs=862.1

Q ss_pred             cccccHHHHhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhH
Q 001874            4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDS   81 (1001)
Q Consensus         4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~s   81 (1001)
                      |++|||+|+++||+|+.++|+.+||.+++++||++|+||+++||+|  ||||.+|+  +|++||+++||||||||+|++|
T Consensus         1 ~~itsAa~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~--er~~AaL~~SKVyy~Lgeye~A   78 (929)
T KOG2062|consen    1 MMITSAAGLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFP--ERQLAALLASKVYYYLGEYEDA   78 (929)
T ss_pred             CcccchHHHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999  99999999  9999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001874           82 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR  161 (1001)
Q Consensus        82 L~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~m~~~~~~~~~~~~AigialE~~  161 (1001)
                      |+|||+||+.||+++.++|++||++||||+|++.+.+.++.+++...||+||+.||+|||++|+.+|+|++|||||+|++
T Consensus        79 l~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~  158 (929)
T KOG2062|consen   79 LEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR  158 (929)
T ss_pred             HHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh
Confidence            99999999999999999999999999999999999988876655578999999999999999999999999999999999


Q ss_pred             chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHhh
Q 001874          162 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR  241 (1001)
Q Consensus       162 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~  241 (1001)
                      |||+|++.+-++++...+|.|+++++++++.+++||++||+++++.|+++++|||+++|||+++|||++.++++|++|++
T Consensus       159 rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~  238 (929)
T KOG2062|consen  159 RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK  238 (929)
T ss_pred             hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence            99999997766689999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             ccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001874          242 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE  321 (1001)
Q Consensus       242 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (1001)
                         +++.++||||||||+++++|+||..|.+.|+.+.                     ..++                  
T Consensus       239 ---e~~~llayQIAFDL~esasQefL~~v~~~l~~d~---------------------~~de------------------  276 (929)
T KOG2062|consen  239 ---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADD---------------------ARDE------------------  276 (929)
T ss_pred             ---cchhhhHHHHHHHHhhccCHHHHHHHHHHccccc---------------------cccc------------------
Confidence               5779999999999999999999999999887520                     0011                  


Q ss_pred             ChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001874          322 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN  401 (1001)
Q Consensus       322 ~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt~~D~flr~n  401 (1001)
                              +.+.++..||+|+.++++|.+||.++|++|+++|+.+|+++  |+|++|+|++++|||||+|||+|+|+|+|
T Consensus       277 --------~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~--r~sv~H~A~~iAN~fMh~GTT~D~FlR~N  346 (929)
T KOG2062|consen  277 --------KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV--RNSVCHTATLIANAFMHAGTTSDTFLRNN  346 (929)
T ss_pred             --------ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH--HHhhhhHHHHHHHHHHhcCCcchHHHHhc
Confidence                    13688999999999999999999999999999999999999  89999999999999999999999999999


Q ss_pred             hhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHHHHHHhhhcc
Q 001874          402 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS  481 (1001)
Q Consensus       402 l~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~s  481 (1001)
                      ++|++|++||+||+||||||+||+||.++++++|.+|||+.+  ..++.|++|||+|||||||+||++.+.+||.++|++
T Consensus       347 L~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~--~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~  424 (929)
T KOG2062|consen  347 LDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEA--GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT  424 (929)
T ss_pred             hhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccC--CCCCCccccchhhhhhccccCcCccHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999852  456899999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-HHHHHhhhcCchhHHHH
Q 001874          482 TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRG  560 (1001)
Q Consensus       482 ~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~LL~~~~et~~e~i~r~  560 (1001)
                      ++++++|||+|||||+++|||.|+++|+.|+.+|++|+++.+|+|++||||+|+||.|.+++ +|++|++|||||+|.|+
T Consensus       425 ~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RG  504 (929)
T KOG2062|consen  425 AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRG  504 (929)
T ss_pred             ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001874          561 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY  640 (1001)
Q Consensus       561 ~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~  640 (1001)
                      +++|++|+.||++|.++.+|+.|..++||++||+|||++++||+||||+.+|++|||++|+|++|||||+||++||||++
T Consensus       505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~  584 (929)
T KOG2062|consen  505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF  584 (929)
T ss_pred             HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccccccccchHH
Q 001874          641 SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG  720 (1001)
Q Consensus       641 g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviALglI~~g~n~a~~pkv~  720 (1001)
                      ++|++|++++++|+++||||||||+|+|||++|||||+.++|++|+||++|+++||||+|+||+|||++|+++..|||++
T Consensus       585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~  664 (929)
T KOG2062|consen  585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN  664 (929)
T ss_pred             cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHHHhHHHHHHHhhhccCccE
Q 001874          721 TFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTA  800 (1001)
Q Consensus       721 ~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~aivGl~~f~q~wyw~pl~~~lsla~~P~~  800 (1001)
                      .|+++|.++|.|||+|.+++|||++||||+++||||+||++++++|+.++.++|||++|+||||||||.|||||||+||+
T Consensus       665 ~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flSLaf~PT~  744 (929)
T KOG2062|consen  665 GFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLSLAFTPTT  744 (929)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCeEEEEeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 001874          801 LIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGK  880 (1001)
Q Consensus       801 li~ld~~l~~p~~~~~~~~k~~~f~yp~~~~~~~~~~~~k~~tavLS~tak~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  880 (1001)
                      +||+|+||++|+|+|+||+||++|+||||.++++.|+++||+|||||||+|+|+|+|+.++||+..++   ++    +..
T Consensus       745 vigln~dLk~Pk~e~~s~ak~~~faYP~p~e~~~~k~~~Kv~TaVLS~t~kakar~k~~~~ek~~~~~---~~----~~~  817 (929)
T KOG2062|consen  745 VIGLNEDLKIPKFEYISHAKPSLFAYPPPDEVKKAKEVEKVATAVLSTTAKAKARAKKEAKEKEPNEE---EG----KAH  817 (929)
T ss_pred             EEEeccccCCcceeeeccCChhhccCCCccccchhhhhhccchhhhhhhhhhhhhhhhhhhhcccchh---hh----ccc
Confidence            99999999999999999999999999999999999999999999999999999999887766522211   00    011


Q ss_pred             CCCCCccCCCCCCCCC----CCCCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCccc
Q 001874          881 GKSSNEKDGDSMQVDA----PPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEV  956 (1001)
Q Consensus       881 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~~  956 (1001)
                      ++...+++.+++..++    ++.+|++.||++++|+||+||+|+|+|||+|++++||+|||..+||||||+|+.|++|++
T Consensus       818 ~k~~~~ke~~~~~iDe~~~~~~~kKkKeep~~~~l~NpaRV~paQ~~~is~~~~~ry~P~k~~~gGiivl~d~~~~~~e~  897 (929)
T KOG2062|consen  818 KKRETEKETEKMGIDEPAELEEVKKKKEEPKFEILDNPARVVPAQLKYISFIDDSRYVPVKLAIGGIVVLRDREPHEPED  897 (929)
T ss_pred             cccchhhcccccccCcHHHHHHhhhcccCCchHhhcChhhcchhhcceeeeccCCceeeEeecCCcEEEEeccCCccchH
Confidence            1111122222222111    134555669999999999999999999999999999999999899999999999999999


Q ss_pred             eeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001874          957 LSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001 (1001)
Q Consensus       957 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1001 (1001)
                      ++++++|..+.             +| +.+.+.||.||+||||..
T Consensus       898 l~e~v~~~~~~-------------~p-~~~~~~e~~pp~~fey~~  928 (929)
T KOG2062|consen  898 LIELVRPTAAA-------------SP-AEPGETEPKPPEPFEYPS  928 (929)
T ss_pred             HHHhccccccC-------------CC-CCCCCCCCCCCCccCCCC
Confidence            99999976331             22 334567899999999963

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK06743 flagellar motor protein MotP; Reviewed	Back alignment and domain information

>cd06561 AlkD_like A new structural DNA glycosylase	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1001
4b4t_N		945	Near-Atomic Resolution Structural Model Of The Yeas		1e-167
4ady_A		963	Crystal Structure Of 26s Proteasome Subunit Rpn2 Le		1e-155

>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945

Back alignment and structure

Iteration: 1

Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust. Identities = 353/976 (36%), Positives = 537/976 (55%), Gaps = 86/976 (8%) Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQL 63 +++A LLA+L E+ S+K +AL ++N+ VDQ W EIS +P I LY+D+ F R++ Sbjct: 3 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTF--SDREM 60 Query: 64 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 123 AAL+ SKV+Y LGE ++ YAL A FD+ E S +V T+++K+I+ Y SK + Sbjct: 61 AALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKD 120 Query: 124 DEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAI-------TRS 173 ++ +DP+L +I ERM++KC+ + + A+GIA+E RLD +E A+ + S Sbjct: 121 EQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS 180 Query: 174 DNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVV 233 +NV ++Y + ++ + V +P+ DYL++ + ++ L++ G+ Sbjct: 181 ENVK-IINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA-GLA 238 Query: 234 SILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPP 293 L K L+ EN D L+ QIAFDLV + Q L Sbjct: 239 LQLFKKLKEEN--DEGLSAQIAFDLVSSASQQLL-------------------------- 270 Query: 294 SAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLY 353 ++ + E T Q DP + ILSG + FL Sbjct: 271 ----------EILVTELT------AQGYDPA----------LLNILSGLPTCDYYNTFLL 304 Query: 354 SHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAK 413 ++ D+ +L K S++ + S+ H+A AN MHAGTT ++F++ NL WL +A NWAK Sbjct: 305 NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAK 364 Query: 414 FSATAGLGVIHRGHLQQGRSLMAPXXXXXXXXXXXXXXXXXXXXYALGLIHANHGEGIKQ 473 F+ATA LGVIH+G+L +G+ +MAP Y LGLI+A G Sbjct: 365 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL---YGLGLIYAGFGRDTTD 421 Query: 474 FLRDSLRST-------NVEVIQHXXXXXXXXXXXXXXDEDIYDDIKNVLYTDSAVAGEAA 526 +L++ + +V+V+ H + ++Y+ +K VLY DSA +GEAA Sbjct: 422 YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAA 481 Query: 527 GISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 585 + MGL M+GT +A +M TY+ ETQH I RGLA+G+AL YGR+E AD LI +M Sbjct: 482 ALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA 541 Query: 586 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 645 + +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL + Sbjct: 542 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 601 Query: 646 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 705 PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+IA++ Sbjct: 602 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 661 Query: 706 MVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SK 764 M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L + Sbjct: 662 MILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENAD 721 Query: 765 TKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGL-NYDLKVPRFEFLSHAKPSL 823 T +VVGL +FSQFWYW+PL +F+SLSF+PT +IG+ D +P+F+ +AK Sbjct: 722 TGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDA 781 Query: 824 FEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKS 883 F YP+ + K+ AVLST+ + ++ Sbjct: 782 FSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERET 841 Query: 884 SNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPS 941 + + ++ + D +++ N R++P Q ++I F++D R+VPV+ + Sbjct: 842 NKKGIKETKENDEEFYKNKYSSKPYKV-DNMTRILPQQSRYISFIKDDRFVPVRKFKGNN 900 Query: 942 GFVLLRDLRPNEPEVL 957 G V+LRD P EP L Sbjct: 901 GVVVLRDREPKEPVAL 916

PyMOL of 4b4t

>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2 Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1001
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	4e-12
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	6e-12
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	9e-09
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-04
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	3e-10
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	2e-05
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	8e-09
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	2e-08
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	5e-08
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	3e-04

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

 Score =  950 bits (2456), Expect = 0.0
 Identities = 380/1021 (37%), Positives = 579/1021 (56%), Gaps = 94/1021 (9%)

Query: 1   MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQ 58
              + +++A  LLA+L E+  S+K +AL ++N+ VDQ W EIS  +P I  LY+D+ F  
Sbjct: 9   HHGSSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSD 68

Query: 59  HQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSK 118
             R++AAL+ SKV+Y LGE   ++ YAL A   FD+ E S +V T+++K+I+ Y    SK
Sbjct: 69  --REMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASK 126

Query: 119 AAESNDEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRS-- 173
               +++      +DP+L +I ERM++KC+   + + A+GIA+E  RLD +E A+     
Sbjct: 127 QYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLD 186

Query: 174 ----DNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEP 229
                     ++Y + ++ + V   ++R  +LR        +P+ DYL++ + ++ L++ 
Sbjct: 187 QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA 246

Query: 230 EGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGS 289
              + + +KL     ++D  L+ QIAFDLV +  Q  L  +   L               
Sbjct: 247 GLALQLFKKLK---EENDEGLSAQIAFDLVSSASQQLLEILVTELTAQ------------ 291

Query: 290 NDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTL 349
                                                        +  ILSG  +     
Sbjct: 292 ----------------------------------------GYDPALLNILSGLPTCDYYN 311

Query: 350 QFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRAT 409
            FL ++   D+ +L   K S++ + S+ H+A   AN  MHAGTT ++F++ NL WL +A 
Sbjct: 312 TFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQ 371

Query: 410 NWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE 469
           NWAKF+ATA LGVIH+G+L +G+ +MAPYLP   A    S + +GG+LY LGLI+A  G 
Sbjct: 372 NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRAS---SRFIKGGSLYGLGLIYAGFGR 428

Query: 470 GIKQFLRDSLRS-------TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVA 522
               +L++ +          +V+V+ HGA LG+GLAA+G+A+ ++Y+ +K VLY DSA +
Sbjct: 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATS 488

Query: 523 GEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE 581
           GEAA + MGL M+GT   +A  +M TY+ ETQH  I RGLA+G+AL  YGR+E AD LI 
Sbjct: 489 GEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT 548

Query: 582 QMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYS 641
           +M    + +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL  
Sbjct: 549 KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608

Query: 642 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGAL 701
           +    PRIV LLS+S+N HVR G A A+GI+CAG GL  AI +L+PLT D VDFVRQ A+
Sbjct: 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668

Query: 702 IAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 761
           IA++M+++Q  E  + +V    +    +I +KH++ ++K GA +A GI++AGGRNVTI+L
Sbjct: 669 IALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728

Query: 762 L-SKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLN-YDLKVPRFEFLSHA 819
             + T      +VVGL +FSQFWYW+PL +F+SLSF+PT +IG+   D  +P+F+   +A
Sbjct: 729 ENADTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYA 788

Query: 820 KPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAG 879
           K   F YP+     +     K+  AVLST+A+AKARAKK  ++K   +   +K       
Sbjct: 789 KEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEH-EEKE 847

Query: 880 KGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVK-- 937
           K + +N+K     + +     K +       + N  R++P Q ++I F++D R+VPV+  
Sbjct: 848 KERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKF 907

Query: 938 SAPSGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPF 997
              +G V+LRD  P EP  L  T       +              +   VD+    P+  
Sbjct: 908 KGNNGVVVLRDREPKEPVALIETVRQMKDVNAP----------LPTPFKVDDNVDFPSAL 957

Query: 998 E 998
           +
Sbjct: 958 Q 958

PyMOL of 4ady

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1001
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.41
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.29
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.25
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.18
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.14
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.06
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.95
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.93
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.88
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.84
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.84
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.82
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.79
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.73
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.67
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.63
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	98.56
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.51
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.45
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	98.43
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.41
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.41
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	98.39
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.35
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.31
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.28
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.26
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.26
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.25
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	98.21
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.19
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.19
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.18
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	98.11
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	98.11
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.11
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.1
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.09
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	98.06
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.04
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.95
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.95
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.94
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.93
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.9
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.74
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.72
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.65
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.52
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.39
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.33
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.31
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	97.31
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.29
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	97.17
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.11
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.04
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	97.01
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.91
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	96.89
3nmz_A		458	APC variant protein; protein-protein complex, arma	96.83
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	96.83
2gw1_A		514	Mitochondrial precursor proteins import receptor;	96.83
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	96.79
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	96.78
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	96.72
3nmz_A		458	APC variant protein; protein-protein complex, arma	96.7
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	96.7
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.61
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	96.54
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	96.54
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.49
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	96.47
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	96.36
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.29
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.14
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.11
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.0
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	95.88
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	95.74
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	95.57
2gw1_A		514	Mitochondrial precursor proteins import receptor;	95.49
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	95.22
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	95.19
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	95.05
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	94.9
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	94.69
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	94.28
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	94.21
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	94.16
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	94.09
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	94.0
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	93.79
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	93.66
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	93.64
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	93.59
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.53
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.36
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	93.33
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	93.14
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	92.95
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	92.86
2xm6_A		490	Protein corresponding to locus C5321 from CFT073 s	92.83
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	92.61
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.52
3u4t_A		272	TPR repeat-containing protein; structural genomics	92.21
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	92.13
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.06
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	91.81
3u4t_A		272	TPR repeat-containing protein; structural genomics	91.78
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	91.59
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	91.52
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	91.4
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	91.37
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	90.95
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	90.91
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	90.61
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	90.52
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	89.79
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	89.67
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	89.5
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	89.5
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	89.2
1ouv_A		273	Conserved hypothetical secreted protein; TPR repea	89.13
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	88.98
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	88.55
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	88.38
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	87.83
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	87.82
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	87.63
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	87.32
3qou_A		287	Protein YBBN; thioredoxin-like fold, tetratricopep	87.28
2b6c_A		220	Hypothetical protein EF3068; structural genomis, D	86.67
2xm6_A		490	Protein corresponding to locus C5321 from CFT073 s	86.04
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	85.89
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	85.89
3jxy_A		232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	85.29
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	84.14
1xi4_A		1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.06
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	83.23
1ouv_A		273	Conserved hypothetical secreted protein; TPR repea	83.17
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	83.17
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	82.14
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	82.03
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	81.41
3qou_A		287	Protein YBBN; thioredoxin-like fold, tetratricopep	81.28

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

Probab=100.00  E-value=5.7e-230  Score=2080.02  Aligned_cols=915  Identities=42%  Similarity=0.703  Sum_probs=794.6

Q ss_pred             cccccHHHHhhhccCCChhHHHHHHHHHHHhhhhhhccccccchhh--hccCCCCCHHHHHHHHHHHHHHccccCCchhH
Q 001874            4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPII--LYEDEEFDQHQRQLAALLVSKVFYYLGELNDS   81 (1001)
Q Consensus         4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~svpki--lyed~~f~~~~r~laA~v~Skv~~~lg~~~~s   81 (1001)
                      .++|+|+|+|+||+|+|++||.|||++|+++||++|+|||++||+|  ||||++|+  +|+|||+|+||||||||+|++|
T Consensus        12 ~~~~~a~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~~ie~l~ed~~f~--~r~laalvaSkvyy~Lg~~~~a   89 (963)
T 4ady_A           12 SSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFS--DREMAALIASKVYYNLGEYESA   89 (963)
T ss_dssp             ---CCSHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHSCTTCT--THHHHHHHHHHHHHHHTCHHHH
T ss_pred             chhhhHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHcCCCcc--hHHHHHHHHHHHheeccchHHH
Confidence            5799999999999999999999999999999999999999999999  99999999  9999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccccc---cCCcchHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 001874           82 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDE---AANVDPRLEAIVERMLDKCITDGKYQQAMGIAI  158 (1001)
Q Consensus        82 L~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~---~~~id~~L~~iv~~m~~~~~~~~~~~~Aigial  158 (1001)
                      |+|||+||++||+++.||||+||+++|||+|++.|++.++.++.   ...+|+||+.||++||+||++||+|+|||||||
T Consensus        90 l~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~AvdLal  169 (963)
T 4ady_A           90 VKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIAL  169 (963)
T ss_dssp             HHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999876553321   136999999999999999999999999999999


Q ss_pred             hccchHHHHHHHhc------cCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHH
Q 001874          159 ECRRLDKLEEAITR------SDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGV  232 (1001)
Q Consensus       159 E~~rld~l~~~i~~------~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v  232 (1001)
                      |+||||+|+++|++      ++|+.|+|+|+++||+++++|++||++|||++++||++++.|||+++|||+++|||++.|
T Consensus       170 E~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li  249 (963)
T 4ady_A          170 EGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLA  249 (963)
T ss_dssp             HTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHH
T ss_pred             HHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHcCCHHHH
Confidence            99999999999997      479999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCccHHHHhhhhhhcccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCC
Q 001874          233 VSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTP  312 (1001)
Q Consensus       233 ~~il~~l~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (1001)
                      +++|++|+.   +++.+|+|||||||+++++|+||.+|.+.|+..                                   
T Consensus       250 ~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~-----------------------------------  291 (963)
T 4ady_A          250 LQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQ-----------------------------------  291 (963)
T ss_dssp             HHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHT-----------------------------------
T ss_pred             HHHHHHHHh---cccHHHHHHHHHHHhcccchHHHHHHHHhcccc-----------------------------------
Confidence            999999984   689999999999999999999999998766420                                   


Q ss_pred             CCCCCCCCCChhhHHHHHHHHHHHhhccCCchhHhhHHHHHhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCC
Q 001874          313 ASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGT  392 (1001)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~kl~~ILs~~~~~~l~~~fL~~~~~~d~~~l~~~K~~ld~r~s~~~~A~~~anafmnaGt  392 (1001)
                                       ..++++++||+|+.++++|++||+++|++|+++|+++|+++|+|+|++|+|++||||||||||
T Consensus       292 -----------------e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~  354 (963)
T 4ady_A          292 -----------------GYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGT  354 (963)
T ss_dssp             -----------------TCCHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTT
T ss_pred             -----------------chhHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCC
Confidence                             013789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhchhhhHHHhhcchhhHHHHHHhhhhcCCcchhhhhhccccccCCCCCCCCCCCchhhHHHHhhhhhcCchHHHH
Q 001874          393 TVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIK  472 (1001)
Q Consensus       393 ~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~l~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al  472 (1001)
                      |+|+|||+|++|++|+++|+||+|++|||+||.||.++++.+|++|||++   +++++|+++||++|||+||+|++++++
T Consensus       355 ~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~~~~  431 (963)
T 4ady_A          355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGRDTT  431 (963)
T ss_dssp             CCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             CcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhcccc---CCCcHHHHHHHHHHHHHhcCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999953   234789999999999999999999999


Q ss_pred             HHHHhhhccCC-------chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCChHHH-H
Q 001874          473 QFLRDSLRSTN-------VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-E  544 (1001)
Q Consensus       473 ~~L~~~L~s~~-------~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs~n~~a~-~  544 (1001)
                      ++|.++|.+++       ++.+|+||+||||++++|++|+++++.|+++|..|+++.+++|++|||+||+||||++++ .
T Consensus       432 ~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~  511 (963)
T 4ady_A          432 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHD  511 (963)
T ss_dssp             HHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHH
Confidence            99999998754       479999999999999999999999999999998888899999999999999999999999 9


Q ss_pred             HHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCC
Q 001874          545 MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVS  624 (1001)
Q Consensus       545 LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI~~LL~~~vsd~~  624 (1001)
                      |++++.++++++++|++++|||++++|++++++.+++.|..++||++||++++++||||+||||+++|++|||.|++|.+
T Consensus       512 LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~  591 (963)
T 4ady_A          512 MFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN  591 (963)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCCchHHHHHHHHHH
Q 001874          625 DDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAM  704 (1001)
Q Consensus       625 ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AviAL  704 (1001)
                      ++|||+||+|||||++|+++++++++++|.+++||+||||+|+|||++|+|||++++|++|+++++|+|++|||+|++||
T Consensus       592 d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          592 DDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             HHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHhhhhccCCCceEEEe-ccCCCCCchhHHHHHHHHHHHH
Q 001874          705 AMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL-LSKTKHDKITAVVGLSVFSQFW  783 (1001)
Q Consensus       705 glI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl-~s~~~~~~~~aivGl~~f~q~w  783 (1001)
                      |+||+|+||+.+|+++++||+|.+++.++|+|+++|||+++||||+||||||+||+| |+++|+++++|++||++|+|||
T Consensus       672 G~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w  751 (963)
T 4ady_A          672 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW  751 (963)
T ss_dssp             HHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT
T ss_pred             HHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 5999999999999999999999


Q ss_pred             hHHHHHHHhhhccCccEEEeccC-CCCCCeEEEEeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHH
Q 001874          784 YWYPLIYFISLSFSPTALIGLNY-DLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQ  862 (1001)
Q Consensus       784 yw~pl~~~lsla~~P~~li~ld~-~l~~p~~~~~~~~k~~~f~yp~~~~~~~~~~~~k~~tavLS~tak~~~r~~~~~~~  862 (1001)
                      |||||+|||+|||+|||+||||+ |||+|+|+|+||+|||+|+|||+++++++|+++||+|||||||||+|+|+||++++
T Consensus       752 yw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~~~~tavls~t~k~~~r~~~~~~~  831 (963)
T 4ady_A          752 YWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKE  831 (963)
T ss_dssp             TCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCCCCC---------------------------------
T ss_pred             HHHHHHHHHHHhcCCcEEEEecccccCCCceEEeeCCChhhcCCCCCcCcccccccccccceeecHHHHHHHHHhhhhhh
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999888765


Q ss_pred             HHHHhhhhhcccccccCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccCCccccccccceeeecCCCCceeccc--CC
Q 001874          863 KEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS--AP  940 (1001)
Q Consensus       863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~--~~  940 (1001)
                      ++.++. .++|+++.++++.+.+++++++.++++++++++++||++++|+|||||+|+|+|||+|++++||+|||+  .+
T Consensus       832 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~n~~rv~~~q~~~~~~~~~~r~~p~~~~~~~  910 (963)
T 4ady_A          832 KGPNEE-EKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGN  910 (963)
T ss_dssp             ----------------------------------------CCCSSCEEEETTSBCCTTGGGGEECCSSSSEEESSCCCSS
T ss_pred             hccccc-ccccccccccccccccccccccccccccccccccCCCCceecCCccccCHHHhCeeecCCCCCccccccCCCC
Confidence            543322 233433321111111111111112233446677889999999999999999999999999999999997  47


Q ss_pred             CcEEEEecCCCCCccceeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001874          941 SGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1001 (1001)
Q Consensus       941 ~gii~l~d~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1001 (1001)
                      +|||||+|++|+||+++++++++.                      +++||||||||||+|
T Consensus       911 ~g~~~l~d~~p~e~~~~~~~~~~~----------------------~~~~~~~p~~f~~~~  949 (963)
T 4ady_A          911 NGVVVLRDREPKEPVALIETVRQM----------------------KDVNAPLPTPFKVDD  949 (963)
T ss_dssp             SEEEEEEESCTTSCCCEECCHHHH----------------------HC-------------
T ss_pred             CceEEEecCCCCccHHHHhccccc----------------------cCCCCCCCCCccCCc
Confidence            999999999999999999977742                      367999999999975

PyMOL of 4ady

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*	Back alignment and structure

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17	Back alignment and structure

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1001
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-05
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.003
d1oyza_		276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 561  LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL--ALAYSGTANNKA----IRQ 614
             ALG +++V    E    +++++     P  +Y  +++L   ++ +     K     I  
Sbjct: 875  YALG-SISVGNLPEYLPFVLQEI--TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWA 931

Query: 615  LLHFAVSDVSDDVRRTAVLALG-FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISC 673
            LL        +  R      LG   L       PR+   L    + + R     AV  + 
Sbjct: 932  LLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG-SSYARSSVVTAVKFTI 990

Query: 674  AGTG------LSEAISLLEPLTSDVVDFVRQGALIAMAMV 707
            +         L   I        D    VR+ AL+     
Sbjct: 991  SDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1030

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1001
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.18
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.07
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.61
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.56
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.53
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.3
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.23
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.13
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.07
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.98
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.74
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.69
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.58
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.52
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.49
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.32
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.1
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.84
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.7
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.7
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.65
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.51
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.39
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	96.2
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.13
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	95.98
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	95.97
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	95.96
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	93.28
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.72
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.97
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	88.86
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	88.77
d2b6ca1		213	Hypothetical protein EF3068 {Enterococcus faecalis	84.8
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	84.27

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=5.7e-10  Score=114.30  Aligned_cols=261  Identities=14%  Similarity=0.097  Sum_probs=151.8

Q ss_pred             HHhhhhhcCchHHHHHHHHhhhccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCC
Q 001874          458 YALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGT  537 (1001)
Q Consensus       458 ~ALGLI~~g~~~~al~~L~~~L~s~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalaLGLi~~Gs  537 (1001)
                      ..+|+.+... ......|.+.|++ .+..+|.-|+.+||..  |  +++++..|...+...+...+..|+.+||-+....
T Consensus         8 ~~~~~~~~~~-~~~~~~L~~~L~d-~~~~vR~~A~~~L~~~--~--~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~   81 (276)
T d1oyza_           8 KEYGLYNQCK-KLNDDELFRLLDD-HNSLKRISSARVLQLR--G--GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK   81 (276)
T ss_dssp             TTHHHHHHHH-TSCHHHHHHHTTC-SSHHHHHHHHHHHHHH--C--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT
T ss_pred             HHHHhccccc-cCCHHHHHHHhcC-CCHHHHHHHHHHHHhh--C--CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Confidence            3455543321 1234455666776 4578888888888765  2  4677777777776556667777777777443222


Q ss_pred             CChHHH--HHHHHhhhcCchhHHHHHHHHHHHhhcCChhhHHH---HHHHHhcCCChhhHHHHHHHHHHHhcCCCcHHHH
Q 001874          538 ASEKAG--EMLTYAHETQHEKIIRGLALGIALTVYGREEEADT---LIEQMTRDQDPILRYGGMYALALAYSGTANNKAI  612 (1001)
Q Consensus       538 ~n~~a~--~LL~~~~et~~e~i~r~~aLgLgLi~~G~~e~ad~---lie~L~~~~d~i~R~~a~~~lglAyaGTGN~~aI  612 (1001)
                      ...+..  .++..+.+..+..+++.++.+|+-+.-+.......   .+.....+.++.+|+.++.+++    ..|+..++
T Consensus        82 ~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~----~~~~~~~~  157 (276)
T d1oyza_          82 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS----VINDKATI  157 (276)
T ss_dssp             TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH----TC---CCH
T ss_pred             ccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHh----hcchHHHH
Confidence            333322  33444444556677777777777665444333222   2333345566777776655444    45566666


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCcchhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC
Q 001874          613 RQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV  692 (1001)
Q Consensus       613 ~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~lv~lL~~~~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~  692 (1001)
                      ..++.. ..+.++.+++.+..+++.+..+.+...+.++.. ....++.+|..+..+++..    +...++..|-....|+
T Consensus       158 ~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~----~~~~~~~~L~~~l~d~  231 (276)
T d1oyza_         158 PLLINL-LKDPNGDVRNWAAFAININKYDNSDIRDCFVEM-LQDKNEEVRIEAIIGLSYR----KDKRVLSVLCDELKKN  231 (276)
T ss_dssp             HHHHHH-HTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHT----TCGGGHHHHHHHHTSS
T ss_pred             HHHHHh-cccccchhhhhHHHHHHhhhccccccchhhhhh-hhhhhhhhhhhhccccchh----hhhhhHHHHHHHhCCh
Confidence            655554 356677777777777777766665555554443 4566777888888888766    5566777555555554


Q ss_pred             chHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCChhHHHHHHHHh
Q 001874          693 VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS  747 (1001)
Q Consensus       693 dd~Vrq~AviALglI~~g~n~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAq  747 (1001)
                        .||..|+-+||-++  +..+    +. .+.   +.+. .++|..++..|.=++
T Consensus       232 --~vr~~a~~aL~~ig--~~~~----~~-~L~---~~l~-~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         232 --TVYDDIIEAAGELG--DKTL----LP-VLD---TMLY-KFDDNEIITSAIDKL  273 (276)
T ss_dssp             --SCCHHHHHHHHHHC--CGGG----HH-HHH---HHHT-TSSCCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcC--CHHH----HH-HHH---HHHc-cCCCHHHHHHHHHHH
Confidence              47888888888765  2221    22 222   2222 345677777665443

PyMOL of d1oyza_

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure