Citrus Sinensis ID: 001957
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 991 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.949 | 0.656 | 0.689 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.939 | 0.648 | 0.679 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.961 | 0.659 | 0.662 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.955 | 0.665 | 0.656 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.958 | 0.659 | 0.668 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.960 | 0.650 | 0.663 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.964 | 0.659 | 0.658 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.942 | 0.636 | 0.666 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.958 | 0.652 | 0.661 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.958 | 0.652 | 0.660 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/970 (68%), Positives = 791/970 (81%), Gaps = 29/970 (2%)
Query: 13 SLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLR S S W N + FSRSSR+EDDEEALKWAALEKLPT++RLRKG+L S+G A EV
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEV 80
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDLP +EVRYEHLN++A+A+
Sbjct: 81 DINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAY 140
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ S +LP+F+ F TN E +LN L I+ S+KR LTILKD+SG+IKP R+TLLLGPPSSGK
Sbjct: 141 VGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGK 200
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLDP LKV+G V+YNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSA
Sbjct: 201 TTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSA 260
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVG+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+C
Sbjct: 261 RCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDIC 320
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++
Sbjct: 321 ADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQ 380
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVAD
Sbjct: 381 ILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVAD 440
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AA
Sbjct: 441 FLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAA 500
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LT E YG+GK+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT
Sbjct: 501 LTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTT 560
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
DGGI+AGA FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV
Sbjct: 561 DDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPV 620
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ +EV +WV L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFG
Sbjct: 621 TLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFG 680
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
SFALL+ +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ET
Sbjct: 681 SFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNET 740
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG V+KSRGFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+
Sbjct: 741 LGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENA 800
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
E G S+ T + D I Q++ KKGMVLPF
Sbjct: 801 EN-------------GEVSSQITSTDGGDSISESQNN---------------KKGMVLPF 832
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
EPHS+TFD+VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 833 EPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLM 892
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL
Sbjct: 893 DVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLP 952
Query: 972 PEVDSETRKV 981
+VD +TRK+
Sbjct: 953 QDVDEKTRKM 962
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1364 bits (3530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/964 (67%), Positives = 785/964 (81%), Gaps = 33/964 (3%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNL 76
S S W N FSRS+R+EDDEEALKWAALEKLPTY+RLRKGIL S+G A EVDV +
Sbjct: 30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDS 89
Query: 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID P +EVR+EHLN++A+A++ S A
Sbjct: 90 GVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRA 149
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
LP+F F +N E +L+ + I+PSKKR +TILKDVSG++KP R+TLLLGPP SGKTTLLL
Sbjct: 150 LPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLL 209
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLD LKV+G VTYNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 210 ALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 269
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316
G+RYEML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGLD+CADTMV
Sbjct: 270 GSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMV 329
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
GD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q++ I GT
Sbjct: 330 GDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGT 389
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
A+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG ADFLQEV
Sbjct: 390 ALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEV 449
Query: 437 TSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTET 496
TS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH AALTT+
Sbjct: 450 TSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQK 509
Query: 497 YGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGI 556
YG+GKR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +D+ DGGI
Sbjct: 510 YGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGI 569
Query: 557 FAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 616
++GA FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIPV+F EV
Sbjct: 570 YSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEV 629
Query: 617 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALL 676
+WVFL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+TFG+FALL
Sbjct: 630 GMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALL 689
Query: 677 VLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQV 736
+ +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG V
Sbjct: 690 LQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAV 749
Query: 737 LKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDR 796
+++RGFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E E+NE
Sbjct: 750 VRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNES--- 806
Query: 797 IGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEPHS 855
+SS Q S E + AS KKKGMVLPF+PHS
Sbjct: 807 -----------------------------ESSPQITSTQEGDSASENKKKGMVLPFDPHS 837
Query: 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915
+TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 838 ITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 897
Query: 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975
GRKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +V+
Sbjct: 898 GRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVN 957
Query: 976 SETR 979
E R
Sbjct: 958 EEKR 961
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1362 bits (3525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/973 (66%), Positives = 789/973 (81%), Gaps = 20/973 (2%)
Query: 13 SLRRSASRWNTNS--IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE 70
S+RR+AS W S AF RS REEDDEEALKWAA+EKLPTY+R+RKGILT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA 130
VD+ LGLQER+ LI++LV+ + DNERFLLKL++R++RVGID P +EVR+E+L+++AEA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 FLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190
++ + +P+F F++N D+L+ +RI+ S KR ++IL D+SG+I+PGR++LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLD TLKVSG VTYNGHDMDEFVPQRT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV 310
ARCQGVGTRY+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370
CADTMVGD MIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 550
ALTT YG+ K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 VTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
V DG IF GA F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 VSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670
+SFLE AVW+ ++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DS 728
GSFA L+LL LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
++TLGVQVLK RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
+ +R G NV+L TLG S ++ S + E + +K+GMV
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNS-------------PSDANAGRGEITGADTRKRGMV 838
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF P S+TFD + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 839 LPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKT 898
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWL
Sbjct: 899 TLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWL 958
Query: 969 RLSPEVDSETRKV 981
RL EVDSE RK+
Sbjct: 959 RLPSEVDSEARKM 971
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1356 bits (3510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/984 (65%), Positives = 786/984 (79%), Gaps = 37/984 (3%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNS-IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEGT AS S+RR++S W +S FSRSSREEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 ILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
ILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
GR+ LLLGPPSSGKTTLLLALAGKLD LK +G VTYNGH M+EFVPQRTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFG+FA+LV +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
GHSW + ++SSETLGV LKSRGF H YWYW+G GAL GFV+L NF +TLALTFL+
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
KP+AVI EE S+E + S++S + EA
Sbjct: 780 GKPQAVIAEEPASDET-------------------------------ELQSARSEGVVEA 808
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
A+ KK+GMVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLT
Sbjct: 809 GAN--KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLT 866
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT
Sbjct: 867 ALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926
Query: 958 IYESLLFSAWLRLSPEVDSETRKV 981
+YESL++SAWLRL EVD RK+
Sbjct: 927 VYESLVYSAWLRLPKEVDKNKRKI 950
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/970 (66%), Positives = 781/970 (80%), Gaps = 20/970 (2%)
Query: 13 SLRRSASRWNTNSIG-AFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLRRS S W + S F RSSREEDDEEALKWAALEKLPTY+RLRKGI+T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ LG QER+ L++KLV+ + DNERFLLKL+NR++RVGID P +EVR+EHLN+ AEAF
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ + +P+ + F+ N IL+ L ++PS KR ++IL DVSG+IKP R+TLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD TLKV+G VTYNGH M EFVPQRT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVGTRYEMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++H
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LTT YG+ K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ +
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
D IF GA F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
SF+E VW+ ++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
+FA LVLL LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +T
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG + L++RG F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
++ +R G NV+L+T G ++ T G + +IR + +KKGMVLPF
Sbjct: 797 KEANRTGANVELATRGSAA---TSDGGSVEIRKDGN---------------RKKGMVLPF 838
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
P S+TFD V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLM
Sbjct: 839 TPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLM 898
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 899 DVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 958
Query: 972 PEVDSETRKV 981
EVD + RK+
Sbjct: 959 AEVDEKQRKM 968
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1322 bits (3421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/981 (66%), Positives = 771/981 (78%), Gaps = 29/981 (2%)
Query: 17 SASRWNTNSIGAFSRSSRE------EDDEEALKWAALEKLPTYNRLRKGILTT------- 63
+AS W + G FSRS EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 64 SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEH 123
VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+P +EVR+EH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLL 183
L EAE + ++ LP+ + TN E N L I+P+KK+ + IL DVSG++KP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG VTYNGH M++FVPQRTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303
RETL+FSARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLD+CADTMVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC 423
LRQ IHI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+C
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483
P+RKGVADFLQEVTSRKDQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLR 543
KSK+H AALTT YGV ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F R
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 603
TKMH+D+VTDG IF GA FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663
SWILKIP+SF+EV +VF+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723
M+VAN FGSF LL+ + LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 FTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
+ S+ETLGVQ L+SRG F WYW+G GAL GF++L N +TLALT+L P+ K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEIESNEQDDRIGGNV-QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
++EE E E+ I GNV + T+ S+N + ++SS+ A+ S
Sbjct: 805 PSVSEE-ELKEKQANINGNVLDVDTMASSTNLAI-------VDNTETSSEI-----ADNS 851
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
+P ++GMVLPF P SLTFD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALM
Sbjct: 852 QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALM 911
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ E
Sbjct: 912 GVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSE 971
Query: 961 SLLFSAWLRLSPEVDSETRKV 981
SLLFSAWLRL +VDS TRK+
Sbjct: 972 SLLFSAWLRLPKDVDSNTRKM 992
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/981 (65%), Positives = 768/981 (78%), Gaps = 25/981 (2%)
Query: 13 SLRRSASRWNTNSIGAFSRSSR----EEDDEEALKWAALEKLPTYNRLRKGILTTSR--- 65
SLRR S W + FSRSS E+DDEEAL+WAALE+LPTY+R+R+GIL S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
GE EVDV LG +E + LI++LV+ D D+ERFLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
+L VEA+ + + LP+ + TN E I N L I+P+KK+ +T+L DVSG+IKP R+TL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG VTYNGH M EFVP+RTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVGTRYEMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VN LRQ IHI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFR
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
D+++SH AAL T YGV ++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M D G I+ GA +FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
PSWIL+IP++FLEV V+VF++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
+MVV++TFG +LL +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
+ + TLGV VLKSRG F WYW+GLGAL G+ LL N YT+AL+ L PF A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTD--DIRGQQSSSQSLSLAEAEAS 840
++E+ + + G V+ G + +R + I Q S S A++ AS
Sbjct: 788 SMSEDALKEKHANLTGEVVE-----GQKDTKSRKQELELSHIADQNSGINS---ADSSAS 839
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
R KGMVLPF P S++F++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALM
Sbjct: 840 R---KGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALM 896
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYE 956
Query: 961 SLLFSAWLRLSPEVDSETRKV 981
SL+FSAWLRL EVDSE RK+
Sbjct: 957 SLVFSAWLRLPSEVDSEARKM 977
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1310 bits (3391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/960 (66%), Positives = 755/960 (78%), Gaps = 26/960 (2%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQR 83
EEDDEEAL+WAAL+KLPTY+R+R IL GE E VDV++LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKF 143
L+++LV+V D DNERFLLKLK RI RVGID+P +EVR+EHL VEAE + ++ +P+ +
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
TN E+ N L I+P++K+ L IL D+SG+IKP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
LK SG VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+FSARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
TEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
ISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRKDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRE 503
QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563
LLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG IF GA FF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLS 623
A+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGG 683
YYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF LL+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRG 741
FIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K + S+ETLGVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801
F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E+ I GNV
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKEKQANINGNV 827
Query: 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEV 861
SSN+ GST G S A+ S+P ++GMVLPF P SLTF+++
Sbjct: 828 LDVDTMASSNNLAIVGST----GTGSEI-------ADNSQPTQRGMVLPFTPLSLTFEDI 876
Query: 862 VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 921
YSVDMP+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 877 KYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 936
Query: 922 YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
YI GNI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS TRK+
Sbjct: 937 YIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKM 996
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/978 (66%), Positives = 769/978 (78%), Gaps = 28/978 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKV 981
FSAWLRL +VDS TRK+
Sbjct: 968 FSAWLRLPEDVDSNTRKM 985
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1302 bits (3369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/978 (66%), Positives = 768/978 (78%), Gaps = 28/978 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKV 981
FSAWLRL +VDS TRK+
Sbjct: 968 FSAWLRLPEDVDSNTRKM 985
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 991 | ||||||
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.982 | 0.309 | 0.721 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.669 | 0.723 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.667 | 0.719 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.961 | 0.668 | 0.721 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.960 | 0.667 | 0.710 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.962 | 0.667 | 0.711 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.958 | 0.665 | 0.716 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.962 | 0.667 | 0.712 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.960 | 0.667 | 0.714 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.947 | 0.571 | 0.714 | 0.0 |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1496 bits (3872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/982 (72%), Positives = 834/982 (84%), Gaps = 8/982 (0%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE---AEA 839
VI EE ++ E GG ++LS S + + ++I G+ SS S ++ E A A
Sbjct: 782 VIVEESDNAE----TGGQIELSQRNSSIDQAASTERGEEI-GRSISSTSSAVREEAVAGA 836
Query: 840 SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTAL 899
+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTAL
Sbjct: 837 NHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTAL 896
Query: 900 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959
MGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+Y
Sbjct: 897 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVY 956
Query: 960 ESLLFSAWLRLSPEVDSETRKV 981
ESLL+SAWLRL +V SETR++
Sbjct: 957 ESLLYSAWLRLPSDVKSETRQM 978
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1491 bits (3860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/979 (72%), Positives = 828/979 (84%), Gaps = 22/979 (2%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++LS R+ S D Q+ S A A A+
Sbjct: 782 VIVEESDNAET----GGQIELS---------QRNSSID---------QAASTAVAGANHN 819
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 820 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 879
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 880 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 939
Query: 963 LFSAWLRLSPEVDSETRKV 981
L+SAWLRL +V SETR++
Sbjct: 940 LYSAWLRLPSDVKSETRQM 958
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1490 bits (3857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/986 (71%), Positives = 832/986 (84%), Gaps = 21/986 (2%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQ-------SSSQSLSLA 835
VI EE ++ E GG ++LS + S+ D RG++ +SS A
Sbjct: 782 VIVEESDNAE----TGGQIELS----------QRNSSIDQRGEEIGRSISSTSSAVREEA 827
Query: 836 EAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895
A A+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGV
Sbjct: 828 VAGANHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGV 887
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
LTALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP
Sbjct: 888 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPH 947
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKV 981
VT+YESLL+SAWLRL +V SETR++
Sbjct: 948 VTVYESLLYSAWLRLPSDVKSETRQM 973
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1484 bits (3841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/979 (72%), Positives = 826/979 (84%), Gaps = 26/979 (2%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++L S NT +R + A A A+
Sbjct: 782 VIVEESDNAET----GGQIEL------SQRNT-------VREE---------AVAGANHN 815
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 816 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 875
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 876 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 935
Query: 963 LFSAWLRLSPEVDSETRKV 981
L+SAWLRL +V SETR++
Sbjct: 936 LYSAWLRLPSDVKSETRQM 954
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1463 bits (3787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/981 (71%), Positives = 818/981 (83%), Gaps = 29/981 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTAWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG QER +L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TNI E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSIVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIVN LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFV V +FAEAFQSFH+G+K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEELVV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G+++GA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYSGALFFTLIMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GRFFKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRFFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGG+++S+ DIK WW W YW SPL Y QNA++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGYVMSKNDIKNWWIWGYWISPLMYGQNALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W ++S LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNTSRNLGVEYLESRGFPSSSYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A ITEE NE G+ ++ + S + E+S
Sbjct: 776 QATITEEESPNE------------------------GTVAEVELPRIESSGRGDSVVESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEV+YSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVIYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKV 981
SLL+SAWLRL VDS+TRK+
Sbjct: 932 SLLYSAWLRLPSGVDSKTRKM 952
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1462 bits (3785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/980 (71%), Positives = 821/980 (83%), Gaps = 26/980 (2%)
Query: 3 GTHDIFMASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL 61
T D + AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L
Sbjct: 2 ATADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLL 61
Query: 62 TTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRY 121
S GEA+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+
Sbjct: 62 MGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRF 121
Query: 122 EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLT 181
EHL ++AEAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLT
Sbjct: 122 EHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDY 301
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGF 421
I+N L+Q IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF
Sbjct: 362 IINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGF 421
Query: 422 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481
+CP+RKG ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +P
Sbjct: 422 KCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASP 481
Query: 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541
FD++KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLF
Sbjct: 482 FDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLF 541
Query: 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 601
LRT+M+K++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA
Sbjct: 542 LRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYA 601
Query: 602 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTG 661
+P+W+LKIP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA G
Sbjct: 602 LPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAG 661
Query: 662 RNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
RNM+VA+TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW
Sbjct: 662 RNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
K +S+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+
Sbjct: 722 SKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQ 781
Query: 782 AVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASR 841
AVITEE + N ++ +T D + + + A AE +
Sbjct: 782 AVITEE-----------------------SDNAKTATTGD--ETHTWGEHMVEAIAEGNH 816
Query: 842 PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMG 901
KKKGMVLPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMG
Sbjct: 817 NKKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMG 876
Query: 902 VSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961
VSGAGKTTLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ES
Sbjct: 877 VSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHES 936
Query: 962 LLFSAWLRLSPEVDSETRKV 981
LL+SAWLRL +V+SETRK+
Sbjct: 937 LLYSAWLRLPSDVNSETRKM 956
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1462 bits (3784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/984 (71%), Positives = 820/984 (83%), Gaps = 34/984 (3%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ DI+ AS SLR RS++ W + + AFSRSSREEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEV 119
+LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGR 179
RYEHLN+EAEAF+ S ALPSFI TN+ E N L + SKK+H+TILKDVSG+IKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
FQIV+ LR +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
GFRCP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 539
PFD++KSH AALTT+ YG+ K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH + + D G++AGA FF + V FNG +EISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659
YAIPSWILKIPV+ +EVAVWVFL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719
GRNM+VANTFG+FA++ +++LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEK 779
SW +++ LGV+ L+SR FF YWYWLGLGAL GFV L N + LAL FL PF+K
Sbjct: 720 SW----HNATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIR--GQQSSSQSLSLAEA 837
P+A ITE+ SNE G+ DI G +SS + SL
Sbjct: 776 PQATITEDESSNE------------------------GTLADIELPGIESSGRGDSL--V 809
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E+S KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLT
Sbjct: 810 ESSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLT 869
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT
Sbjct: 870 ALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVT 929
Query: 958 IYESLLFSAWLRLSPEVDSETRKV 981
+YESLL+SAWLRL VDS+TRK+
Sbjct: 930 VYESLLYSAWLRLPSSVDSKTRKM 953
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1461 bits (3783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/984 (71%), Positives = 827/984 (84%), Gaps = 30/984 (3%)
Query: 1 MEGTHDIFMASTSLRR-SASRWNTNSIGAFSRSSR--EEDDEEALKWAALEKLPTYNRLR 57
MEGT ++++A SLRR +S W +N++ FS+SSR E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
KG+LTTS+GEANE+DV NLG E++ L+D+LVKV + DNE FLLKLKNRIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR+EHLNVE EA + S ALP+F F +I E LN+L I+PS K+ L+IL+DVSG+IKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
R+TLLLGPPSSGKTTLLLALAGKLDP LK SG VTYNGH+M+EFVPQRTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCAD MVG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN ++Q IHI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
MGF+CP+RKGVADFLQEVTSRKDQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L TPFDKSKSH AALTT+ YGVGK ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+D+VT+GGI+ GA FF++ + FNG SEIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
WA+++P WI KIP++ ++VA+WVFL+YYV+G+D N GRFFKQY LL V+QMAS LFRFI
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFGSFALL L +LGGFILSR++IKKWW W YW SPL Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
G+SW K D++ETLG+QVL+SRGFF H YWYW+G+GAL GF LL NF +TLALTFL P
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
+KP+AVI+E+ SN + G +QLS++ T+ I
Sbjct: 780 QKPQAVISEDSASN-TSGKTGEVIQLSSV-----------RTELI--------------V 813
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E + K+KGMVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLT
Sbjct: 814 EENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLT 873
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT
Sbjct: 874 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVT 933
Query: 958 IYESLLFSAWLRLSPEVDSETRKV 981
+YESLL+S+WLRL PEV+SETRK+
Sbjct: 934 VYESLLYSSWLRLPPEVNSETRKM 957
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1460 bits (3780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/981 (71%), Positives = 818/981 (83%), Gaps = 29/981 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTVWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TN+ E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSLVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV+ LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFVTV +F+EAFQSFH+G K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEELAV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G++AGA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYAGALFFTLVMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GR FKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRLFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGGF++++ DIK WW W YW SPL Y Q A++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGFVMAKSDIKNWWIWGYWISPLMYGQTALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W +SS LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNSSRNLGVEYLESRGFPSSAYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A I EE NE V+L + S R GS E+S
Sbjct: 776 QATIAEEESPNEVTV---AEVELPRIESSG----RGGSV-----------------VESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGNIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKV 981
SLL+SAWLRL VDS+TRK+
Sbjct: 932 SLLYSAWLRLPSSVDSQTRKM 952
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1457 bits (3773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/973 (71%), Positives = 816/973 (83%), Gaps = 34/973 (3%)
Query: 10 ASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEA 68
AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L S GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEA 128
+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+EHL ++A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188
EAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
D+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N L+Q
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG 428
IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF+CP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSH 488
ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548
AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLFLRT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
IP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA GRNM+VA+
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS 728
TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW K +S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE- 1008
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
S N T ++++ + A AE + KKKGMV
Sbjct: 1009 --------------------SDNAKT------------ATTEHMVEAIAEGNHNKKKGMV 1036
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 1037 LPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKT 1096
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ESLL+SAWL
Sbjct: 1097 TLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWL 1156
Query: 969 RLSPEVDSETRKV 981
RL +V+SETRK+
Sbjct: 1157 RLPSDVNSETRKM 1169
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6565 | 0.9556 | 0.6654 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6628 | 0.9616 | 0.6599 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 991 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-77 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-49 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-49 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-41 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-35 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-34 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-32 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-30 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 5e-28 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-22 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-21 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-21 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-16 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-14 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-14 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-12 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-09 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-07 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-06 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-06 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-05 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-05 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 6e-05 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-05 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-04 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-04 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-04 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-04 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-04 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-04 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-04 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-04 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-04 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 0.001 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 0.001 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.001 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.001 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 0.002 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 0.002 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.003 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.003 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 0.003 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.003 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.003 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 0.003 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 0.004 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.004 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1345 bits (3483), Expect = 0.0
Identities = 569/985 (57%), Positives = 718/985 (72%), Gaps = 18/985 (1%)
Query: 11 STSLRRSASRWNTNSIGAFS-------RSSREEDDEEALKWAALEKLPTYNRLRKGILTT 63
S+ RS SR + N FS R+S ++DEEALKWAA+EKLPTY+RLR I+ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115
++ EVDV L +RQ+ ID + KV + DNE+FL K +NRIDRVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVI 175
VEVR+EHL VEA+ ++ S ALP+ NI E L L I +KK LTILKD SG+I
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDP+LKVSG +TYNG+ ++EFVP++T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
H+G MTV+ETL FSARCQGVGTRY++L+ELARREK AGI P+ ++D++MKA A EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV CL+Q +H+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475
F S GF+CP+RKG ADFLQEVTS+KDQ QYWA + KPYR+++V EFAE F+SFHVG ++
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAV 535
+EL PFDKS+SH+AAL Y V K ELLKA +E LLMKRN+FVY+FK +QI VA
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595
+ T+FLRT+MH DG ++ GA F++ + FNGF+E+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
PPW + +P+++L IP+S +E VWV ++YY +G+ A RFFKQ L+ + QMA+ +FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANE 715
IA R M++ANT G+ LL++ LGGFIL + +I WW+WAYW SPL+Y NA+ NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774
W K D+S LG VL F + WYW+G+GAL GF +L N +TLALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL 834
+P K +A+I+EE + + LS+ G++ + G + S
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD--SS 846
Query: 835 AEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPG 894
EA K+GMVLPF P +++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
VLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 955 FVTIYESLLFSAWLRLSPEVDSETR 979
VT+ ESL++SA+LRL EV E +
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEEK 991
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 717 bits (1853), Expect = 0.0
Identities = 257/935 (27%), Positives = 401/935 (42%), Gaps = 124/935 (13%)
Query: 95 DNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152
+ + ++ + ID I K+ V Y++L+ A S+ P+F I
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGT 211
L+ + ILK + G+IKPG LT++LG P SG +TLL +A D V G
Sbjct: 63 RKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 212 VTYNGHDMDEFVPQRTA--AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
+TY+G +E Y ++ D H +TV ETL F+ARC+ R + ++
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
+ I D Y+ GL +T VG++ +RG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
KRV+ E +G A D + GLDS+T + + L+ + +I T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHK 449
+LFD +I+L +G +Y GP + ++F MGF+CP R+ ADFL +TS +RQ
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 450 EKP-YRFVTVQEFAEAFQSFHVGQKISDELRTPFDK---------------SKSHRAALT 493
EK R T QEF +++ ++ E+ D+ +K +
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 494 TETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553
+ Y V +K ++R L MK N +F + +A++ ++F +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYS 452
Query: 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613
G GA FFAI F+ EI+ P+ K R + + P A AI S I +IP
Sbjct: 453 RG---GALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSF 673
+E V+ + Y++V + AGRFF +L S LFR I + + A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 674 ALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----DSS 729
LL L GF + R + W KW Y+ +PL YA +++ NEF G ++
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 730 ETLGVQ---------------VLKS---RGFFAHEY-WYWLGLGALFGFVLLLNFAYTLA 770
+ LGV V + F + W G + GF + F Y L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 771 LTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQ 830
F ++ ++ + + + G T + + +DI
Sbjct: 690 TEFNKGAKQKGEILVFR-RGSLKRAKKAG-------------ETSASNKNDI-------- 727
Query: 831 SLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV-----------QGVLED 879
+ G VL + D+V DM +E + ++
Sbjct: 728 -------------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKE 774
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
K V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG + +F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974
R GY +Q D+H P T+ ESL FSA+LR V
Sbjct: 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 6e-77
Identities = 161/644 (25%), Positives = 296/644 (45%), Gaps = 74/644 (11%)
Query: 148 FEDILNYLRIIPSKKRH-LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
++ +++ LR ++R +LK+VSGV KPG L ++G +GKTTL+ ALA + +
Sbjct: 20 WKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 207 KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
K SG+V NG +D + +AY+ Q D I +TVRE L F A M +
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPRRV 132
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE-MIRGIS 325
++EK + V+ LGL CA+T +G ++G+S
Sbjct: 133 TKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKGLS 168
Query: 326 GGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
GG++KR+ E++ P L LF DE ++GLDS + +V L+ + T + ++ QP
Sbjct: 169 GGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIHQP 226
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
+ E ++LFD IIL+++G++ Y G + + FF+ +G CP+ ADF +V + +
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE 286
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS------------HRAAL 492
+ +++ ++F +G+ + K+ + A+
Sbjct: 287 -----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 493 TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
T+ Y + KR L ++ R+ LL+K +LIQ A++ ++L + + V
Sbjct: 340 WTQFYALLKRSWL--SVLRDPLLLK-------VRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
+ GA F +T + F N F I++ A+LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ A++ ++Y+++G S A F L+ V +A++ I+ + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
++ L GGF ++ + I ++KW + S Y ++ N++ + T ++
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 732 L----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLAL 771
G +L++ F + +L L L + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-49
Identities = 63/122 (51%), Positives = 77/122 (63%), Gaps = 11/122 (9%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 913 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-LS 971
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR LS
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
Query: 972 PE 973
E
Sbjct: 111 VE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-49
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 503 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 620
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 7e-44
Identities = 162/650 (24%), Positives = 256/650 (39%), Gaps = 120/650 (18%)
Query: 104 KNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163
KN I+ G L ++ E +V E + + I + N L Y + KK
Sbjct: 724 KNDIEA-GEVLGSTDLTDESDDVNDEKDMEKES-GEDIFHWRN-----LTY--EVKIKKE 774
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-F 222
IL +V G +KPG LT L+G +GKTTLL LA ++ + G NG +D F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
QR+ Y+ Q D H+ TVRE+L FSA R+ K+
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS------ 872
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGP 341
E + +K+L ++ AD +VG G++ Q+KR+T G E++ P
Sbjct: 873 -----------EKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKP 920
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-SLLQPAPETYDLFDDIILLSD 400
L LF+DE ++GLDS T + I +R+ + G A++ ++ QP+ ++ FD ++LL
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKL--ADHGQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 401 G-QIVYQGP----RELVLEFFASMGFR-CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
G Q VY G ++ +F G CP+ A+++ EV AH
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG----AHAN---- 1030
Query: 455 FVTVQEFAEAFQSFHVGQKIS---DELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
Q++ E +++ Q + D L K++ Y
Sbjct: 1031 ----QDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA------------ 1074
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTL-FLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
S Y FKL+ + T +L +K +F G TFF + +
Sbjct: 1075 --------SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF--AALFIGFTFFKVGT-SL 1123
Query: 571 NG-----FSEISMTI-------AKLPVFYKQRDF--------RFFPPWAYAIPSWILKIP 610
G F+ T+ LP F QRD R F A+ ++IP
Sbjct: 1124 QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP 1183
Query: 611 VSFLEVAVWVFLSYYVVGYDSNA-------GRFFKQYALLLGVNQMASALFRFIAVTGRN 663
+ + ++ F+ YY VG+ NA R + L S L + + N
Sbjct: 1184 YNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPN 1243
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713
A S + LS G + + +W + Y CSP TY A+++
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 38/242 (15%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
IL DVS ++ G++ +LG SGKTTLL A++G+++ SG + +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AY+ Q D + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALAL 345
A T +G +++GISGG+++RV+ +++ P + L
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
+DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 406 QG 407
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 4e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 9e-38
Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 51/298 (17%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T L VS ++PG + LLGP +GKTTLL LAG L PT SG + G+D+
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
+EA + L++ GL+ ++ +R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDI 395
++ L +DE ++GLD + +I LR+ T ++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFASMGFRC--PKRKGVADFLQEVTSRKDQRQYWAHKEK 451
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K + + E
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 155 LRIIPSKKRH----LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
R I + ILKD SGV+KPG + L+LG P SG +TLL ALA + + + V G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 211 TVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255
+ YNG EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-35
Identities = 157/673 (23%), Positives = 299/673 (44%), Gaps = 121/673 (17%)
Query: 148 FEDILNYLRIIPSKKRH-------LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200
F+D+ NY +P++ + L +L++V+G +PG LT L+G +GKTTL+ LAG
Sbjct: 870 FDDV-NYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Query: 201 KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRY 260
+ + G + +G + R + Y Q+D H ++TVRE+L +SA +
Sbjct: 929 RKTGGY-IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR------ 981
Query: 261 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320
+ E+++ EK + D ++++ LD D +VG
Sbjct: 982 -LPKEVSKEEKM------------------------MFVDEVMELVELDNLKDAIVGLPG 1016
Query: 321 IRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAV 378
+ G+S Q+KR+T E++ P++ +FMDE ++GLD+ ++ +R + ++G T V
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTV--DTGRTVV 1073
Query: 379 ISLLQPAPETYDLFDDIILLS-DGQIVYQGP----RELVLEFFASM-GF-RCPKRKGVAD 431
++ QP+ + ++ FD+++L+ GQ++Y GP ++E+F ++ G + ++ A
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK---ISDELRTPFDKSKSH 488
++ EV+S + + +FAE ++S + Q+ + EL TP +
Sbjct: 1134 WMLEVSSLAAEVKLGI------------DFAEHYKSSSLYQRNKALVKELSTPPPGASDL 1181
Query: 489 RAA--LTTETYGVGKRELLKA----------NISRELLLMKRNSFVYIFKLIQIAFVAVV 536
A + T+G K L K N+ R + F L A++
Sbjct: 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR-----------FFFTLA----AALM 1226
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIA-KLPVFYKQRDFRFF 595
T+F + + D + GA + A+ V N S + +A + VFY++R +
Sbjct: 1227 VGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
YAI + +IP ++ + + Y +V ++ A +FF Y ++ + F
Sbjct: 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF----ISFFSFLYFT 1342
Query: 656 F-----IAVTGRNMVVANTFGS--FALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708
+ +++T N VA F + + L L S GF + R I KWW W YW P+ +
Sbjct: 1343 YYGMMTVSLT-PNQQVAAIFAAAFYGLFNLFS--GFFIPRPKIPKWWVWYYWICPVAWTV 1399
Query: 709 NAIVANEFLGHSWKKFTQDSSETLGVQV-LKSRGFFAHEYWY---WLG--LGALFGFVLL 762
++ +++ +D+ + G + + Y Y ++G L GF +
Sbjct: 1400 YGLIVSQY------GDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453
Query: 763 LNFAYTLALTFLD 775
F + + L+
Sbjct: 1454 FAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 3e-34
Identities = 131/534 (24%), Positives = 246/534 (46%), Gaps = 64/534 (11%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ +GT+ N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALA 344
+ QE ++ + + LGL C +T++G+ IRGISGG++KRV+ EM++ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEA 464
+ G + +F S+GF ADFL ++ + Q + +EKP Q +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKR----- 518
+ + + K + E+ + + +T+ + R + ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 519 --NSF--VYIFKLIQIAFVAVVYMTLFLRTKMHKD--TVTD--GGIFAGATFFAITMVNF 570
SF + +F++I A +A + H D V D G +F + F+ + F
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMW-------WHSDFRDVQDRLGLLFFISIFWGV----F 452
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
F+ + + + +F K+R + +Y + + +P+ + +++ ++Y++ G
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGF 684
G F +LLG ++ L + + A+T + +L + GGF
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 915 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L K +LK+VSG KPG LT ++GP +GK+TLL ALAG+ L VS
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVS 65
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
G V NG +D+ ++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 66 GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-28
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 72/261 (27%), Positives = 109/261 (41%), Gaps = 62/261 (23%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + D+S + G + LLG +GKTT L L G+L PT SGT NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
E + L+VLGL A+ +SGG K++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-22
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S I G +T +LGP SGK+TLL LAG L P SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ LR ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 941
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR 138
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-21
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 148 FEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK 207
+++ LNY +P K +L ++SG +KPG LT L+G +GKTTLL LAG+
Sbjct: 6 WKN-LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGV 61
Query: 208 VSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
++G + NG +D+ QR+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
L D+S IK G L++GP SGK+TLL L G L PT SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GP 341
+E + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ L++ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 941
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
Y Q+DI P +T+ E+L ++A LRL + RK
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
LKDVS I+ G LL+GP SGK+TLL L G L PT SG V +G D
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 225 --QRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ D+ + TV + +AF G+ RE+
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE---------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVG 340
++ E L+++GL+ D +SGGQK+RV G + +G
Sbjct: 115 ---IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + L +DE + GLD +++ L++ + G +I + + D +++L D
Sbjct: 157 PEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 401 GQIVYQGPRELVLE 414
G+I+ G +
Sbjct: 215 GKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 75/284 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S IK G L LLGP +GK+TLL +AG P +G + NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ ALA L +DE LD+ ++ LR+ +H G + + E +L
Sbjct: 148 -LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELA 205
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 206 DRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 7e-18
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 55/254 (21%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ LK VS I+ G ++GP SGK+TLL L G PT SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTD 67
Query: 219 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + AA ++ Q N + ++T E + GV + RRE+
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ERRER 120
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + L+ +GL + E+ SGGQ++R
Sbjct: 121 AEEL---------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ LR+ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 70/268 (26%), Positives = 102/268 (38%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+LK V ++ G + ++GP SGK+TLL + G L P SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R + Q +TV E +AF R T L+ E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ I E L+ +GL D + +SGG KKRV
Sbjct: 113 -----IREIVLEK----------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFAS 418
+ D I +L DG+IV +G E E AS
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 72/257 (28%), Positives = 104/257 (40%), Gaps = 62/257 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
++DVS + G +T LLG +GKTTLL +A L P SG VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+++ + IG +T RE L + AR L L+R+E A I
Sbjct: 70 PSFVRR---KIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
A + K L L D VG S G K++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + ++Q N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKDV+ I+ G +LLGP GK+TLL +AG +PT SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R A + Q H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
K+LGL+ + +SGGQ++RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + + + +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+DG+I G P EL + P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LKDVS I PG L+GP +GK+TLL L G ++PT SG+V +G D+++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 226 --RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPD 278
R I Q N I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
P + K A L+ +GL A D++ SGGQ++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ L++ I+ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 4e-16
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 54/273 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L DV+ + G L LLGP SGK+TLL +AG P SG + NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD+ ++ + LR+ T V + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G P E+ + P V FL EV
Sbjct: 211 QIGSPDEV---------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 6e-16
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 72/266 (27%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
+I + LKDV+ I+ G ++GP SGK+T LL L G LD PT SG V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLI 64
Query: 215 NGHDMDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
NG D+ + + A ++ Q+ N + ++TV E + G
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------- 116
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
RR++AA + L+VLGL+ + +SGG
Sbjct: 117 RRKRAA--------------------------EELLEVLGLEDRLL----KKKPSELSGG 146
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVI-- 379
Q++RV + AL + DE TG LDS T +++ LR+ ++ G +I
Sbjct: 147 QQQRV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMV 199
Query: 380 --SLLQPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 200 THD-----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 8e-16
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 74/271 (27%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
P+ + L DVS IK G L+G SGK+TL A+ G L PT SG++ ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGK 67
Query: 218 DMDEFVPQ------RTAAYISQHDNHIGE----MTVRETLAFSARCQGVGTRYEMLTELA 267
D+ + + + + Q + + MT+ E +A R G ++ E + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQ--DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEA 124
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
G+ + V + +SGG
Sbjct: 125 VLLLLVGVGLPEE-----------------------------------VLNRYPHELSGG 149
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI--- 379
Q++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 150 QRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 204 HDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D+S ++PG LLGP GKTTLL +AG P SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ L++ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L P+ SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ EA L+ +G+ + D I +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL---LQPAPETYDLFDDIILLSD 400
L +DE TG+D + +I + L++ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVM---AYFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 8e-15
Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
IL VS + G + LLG +GKTTLL + G L P SG++ ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 QRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR-----YEMLTELA-RREKA 272
A Y+ + E+TV E L AR + YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +R+ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 64/266 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL +AG P+ +V SGT+ + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
A +++ Q+ I ++ E L + ARR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVTTGE 336
D + + L +LG+D +E + G SGG+KKR +
Sbjct: 115 D--LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQ 157
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS-------LLQPAPET 388
M + P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 158 MALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---- 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ----DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 49/255 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
LKDV+ I G + ++GP +GK+TLL +L G +DPT SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 225 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I Q N + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLF 120
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ +A+ + ++ Y + A T+ SGGQ++RV +V
Sbjct: 121 SKEDKAQALDAL-ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ L+ I+ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGPRE 410
I L G+IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T + D+S IK G LLGP GKTTLL +AG P+ SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+R + Q H MTV E +AF + + ++ K A I
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI-- 113
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
KA E L+++GL+ AD +SGGQ++RV
Sbjct: 114 --------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE + LD+ Q+ L++ + G + + E + D I +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++DG+I G P E+ + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-14
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 59/265 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D++ IK G+LT L+G +GK+TLL L G L PT G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +++SQ+ ++ T+RE + + + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
GL DT++G+ G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ + V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE---LAKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PRELVLE--FFASM 419
L +G++V QG EL + +A++
Sbjct: 527 LDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-14
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L DVS ++PG + L+GP +GKTTL ++G L PT SG+V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A I Q E+TV E + +A+ + T +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ P L L +DE + GL+ T ++ +R+
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
R GY Q P +T+ E+L F A L + ++E R
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER 116
|
Length = 293 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-14
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 67/261 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L +VS I+PG ++G SGK+TLL L G PT G+V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG----IKPDPD 280
+R Y+ Q D + T+R+ +A A E + A AG ++ PD
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD 589
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GLD +G E R +SGGQ++ V ++
Sbjct: 590 --------------------------GLD----MQIG-ERGRSLSGGQRQAVALARALLR 618
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
P + L +DE ++ +D+ + + + L++ + +G ++ SLL DL D
Sbjct: 619 DPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLL-------DLVD 667
Query: 394 DIILLSDGQIVYQGPRELVLE 414
II++ +G+IV GP++ VLE
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-14
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 19/135 (14%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 895
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 956 VTIYESLLFSAWLRL 970
+T+ E+L+F + LRL
Sbjct: 155 LTVRETLVFCSLLRL 169
|
Length = 659 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM------V 339
+A+A + GL R +SGG+++RV ++ V
Sbjct: 118 QALAATD------------LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + RQ G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 65/269 (24%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G P+ SGTV + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQG-----VGTRYEMLTELARREKAAGI 275
R A I+ Q +TV E +A A + +G E RE+A +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
L+ +GL AD G+ +S GQ++R+
Sbjct: 134 ---------------------------LEFVGLGELADRPAGN-----LSYGQQRRL--- 158
Query: 336 E----MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV------ISLLQPA 385
E + P L L +DE + GL+ T ++ +R + G + + L+
Sbjct: 159 EIARALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV--- 213
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 214 ---MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
L DVS I G L LLGP SGKTTLL +AG P SGT+ + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ LR+ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---- 221
+L+DVS +KPG ++GP +GK+TLL A+ G L PT SG++ G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 222 --FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+VPQR + + ++VR+ + + +
Sbjct: 70 IGYVPQRRSI------DRDFPISVRDVVL-----------------MGLYGHKGLFRRLS 106
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D KA E L+ +GL + + D I +SGGQ++RV +V
Sbjct: 107 KAD---KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALV 148
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIIL 397
L +DE G+D T I LR+ + T ++ L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 398 LSDGQIVYQG 407
L + +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L+ VS + PG L+GP +GK+TLL L G +DPT G++ NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ A++ QH + T+ E + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAGL--------- 437
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ +A Q GL DT +G+ G+SGGQ +R+ + A
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE + LD+ T +++ LR
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 52/214 (24%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ +S + G +L GP SGKTTLL +AG L P +GT+ +G D+D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA-- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
A+ +GL A G +S GQK+RV ++V
Sbjct: 111 -ALEA---------------VGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE + LD++ +R H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +VS I+ G ++G SGK+TLL LAG PT SG+V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L R + AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL----RAAELAGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GL D +G E RG+SGGQ++ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ LRQ + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +GTV G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGG+++RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +R+ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 62/254 (24%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---- 218
L VS + PG + LLGP +GKTTL+ LA P+ SGT+ +G D
Sbjct: 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R Y+ Q TVRE L + A +G+ P
Sbjct: 67 PQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
++ + D L+++ L + I +SGG ++RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLRQ----NIHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + I I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 72/297 (24%), Positives = 109/297 (36%), Gaps = 87/297 (29%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL + G P +V G + ++G D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED------- 69
Query: 226 RTAAYISQHDNHIGEMTVRE------TLAFS--ARCQGVGTRYEMLTELARREKAAGIKP 277
I E++ E LAF GV A +
Sbjct: 70 ------------ILELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
P+ +K A ++LGLD +E + G SGG+KKR
Sbjct: 116 LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRN 153
Query: 333 TTGEMMV-GPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPET 388
++++ P LA+ +DE +GLD + +N LR+ G +I+ Q
Sbjct: 154 EILQLLLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ----- 204
Query: 389 YDLFDDII-----LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 440
L D I +L DG+IV G EL E + KG + V
Sbjct: 205 -RLLDYIKPDKVHVLYDGRIVKSGDPELAEEL---------EEKGYDWLKEVVGGEA 251
|
Length = 251 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 5e-13
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L P SG + G D+ E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFS 250
V +R Y+ + + +TVRE L S
Sbjct: 71 VKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 53/255 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM------ 219
LK+++ I PG ++GP +GK+TLL + ++P+ SG++ G D+
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I QH N I +TV E + R T +L + +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MM 338
+A+ L+ +GL A D++ SGGQ++RV +
Sbjct: 124 -----ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----FD 393
P L L DE LD T+ Q+++ L+ I+ G T +I+L Q DL D
Sbjct: 162 QQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQ-----VDLAKKYAD 214
Query: 394 DIILLSDGQIVYQGP 408
I+ L G+IV+ G
Sbjct: 215 RIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 6e-13
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
V M E + + L + L + +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLRQNIHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG PT SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 81/278 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL V + G + +LG SGK+TLL + G L P G + +G D+ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ Q +TV E +AF L E + P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
I V MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I +R +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 416
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 9e-13
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I PG ++G SGK+TLL L G P G + +G D+++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A E + E A+ AG
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF----- 591
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + DT VG E +SGGQ++R+ ++
Sbjct: 592 ---------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+I
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKI 685
Query: 404 VYQGPRELVLE 414
V QG E +L
Sbjct: 686 VEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 935
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 940
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 941 -RISGYCEQNDIHSPFVTIYESLLFSAWLR 969
+ GYC Q D +T+ E L F A L+
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK 103
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM- 219
K+ + + VS +KPG +T LLGP +GKTT L LAG L+P +G T +G D+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 220 -DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R ++S +T RE L + A G+
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------- 108
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+G E + LG++ D VG G S G +++V +
Sbjct: 109 ------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 339 VGPALALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
V L +DE +TGLD + + + LR G ++ E L D +
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEVERLCDRV 206
Query: 396 ILLSDGQIVYQG 407
++L G++VY+G
Sbjct: 207 VVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.6 bits (164), Expect = 1e-12
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+LKDVS IKPG ++GP SGK+TLL L DPT SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGH-DMDEFVPQRTAAYIS 232
+T + G +GK+TLL +AG P + ++GTV ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD + Q++ L+Q I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-12
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 115/268 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
LKD++ + G L ++GP SGK++LL AL G+L+ K+SG+V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ AY+SQ N T+RE + F G ++
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE--------------------- 94
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQK 329
+ Y KV + CA T +G+ +GI SGGQK
Sbjct: 95 ----------------ERYEKV--IKACALEPDLEILPDGDLTEIGE---KGINLSGGQK 133
Query: 330 KRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV- 378
+R+ +LA +D+ + +D+ I NC+ + +N+ T +
Sbjct: 134 QRI---------SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRIL 183
Query: 379 ----ISLLQPAPETYDLFDDIILLSDGQ 402
+ LL A D I++L +G+
Sbjct: 184 VTHQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 66/277 (23%)
Query: 148 FEDI-LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
F+++ Y PS+ ILK +S I PG+ L+G GK+T++ L DPT
Sbjct: 3 FKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT- 56
Query: 207 KVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
SG + +G D+ + + +SQ + + + T+ E + +
Sbjct: 57 --SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------- 100
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
KPD + +A +AN I D+ ++ L DT+VG+ RG
Sbjct: 101 ------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---RG 137
Query: 324 --ISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+SGGQK+R+ ++ P + L +DE ++ LD+ + + L T VI
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIA 195
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 196 HRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 68/272 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+LKDVS I G+ ++GP SGK+T+L L D + SG++ +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 223 ----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
VPQ T + +D T+ + + R A
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPDA 102
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKK 330
D +V A A + I D K++ DT+VG+ RG +SGG+K+
Sbjct: 103 T------DEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---RGLKLSGGEKQ 144
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
RV ++ L +DE ++ LD+ T +I LR G I + +
Sbjct: 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVN 201
Query: 391 LFDDIILLSDGQIVYQG-PRELVLE--FFASM 419
D II+L DG+IV +G EL+ + +A M
Sbjct: 202 A-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 67/259 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + P SG + ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PQRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR------YEMLTELA-RRE 270
P A AY+ + +TV E L AR YE+ L RR
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRN 131
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ AG T+ SGG+++
Sbjct: 132 QRAG---------------------------------------TL---------SGGEQQ 143
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+ +M P L L +DE S GL +I +++ + G ++ + Q A
Sbjct: 144 MLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFAL 201
Query: 390 DLFDDIILLSDGQIVYQGP 408
++ D +L +G+IV G
Sbjct: 202 EIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 44/216 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G +D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + +Q D H+ + TVRE L + T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR--- 455
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
L DT++G E +SGG+++R+ ++ A
Sbjct: 456 -----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
L +DE + LD+ T +++ L SG V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 51/245 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTLKVSGTVTYNGHDMDEF 222
+L D++ I PG + +L GP SGKTT LL L G L + +LKV G Y + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+R YI Q N +G +T R Q V E+ L+ +E
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE--------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMV 339
+A A L+ +GL GD + +SGGQK+RV +V
Sbjct: 121 ---RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE + LDS + +V +++ G ++ ++ D+ D I+ +
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHME 215
Query: 400 DGQIV 404
DG+++
Sbjct: 216 DGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T L D++ I G +LLGP GKTT L +AG +PT SG + G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++ +A ++L ++ + D + +SGGQ++RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ L+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S + G++T L+GP GK+TLL A L P SGTV + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A ++ QH +TVRE +A+ R L+ R
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRL------------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E N + ++ ++ AD + D +SGGQ++R ++
Sbjct: 112 ---------SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +R+ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 68/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L VS IK G LLGP GKTTLL +AG PT SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ + EG + +SGGQ++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ-------NIHINSGTAVISLLQPAPETYDLFDDIIL 397
L +DE LD LR+ + G + + E + D I +
Sbjct: 152 LLLDEPLGALDLK--------LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++ G+I G P E+ + P + VADF+
Sbjct: 204 MNKGKIQQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNG 216
+RH IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMDEFVPQRTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ R A A + Q + AFSAR + RY ARR A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+ D ++ +A+A G A +VG + + +SGG+ RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
++ P L +DE + LD + ++++ +R+ + + V++++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHD 214
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVL 413
D I +L+DG IV G VL
Sbjct: 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 49/198 (24%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S K+ IL D+S + G + L G +GKTTL LAG + + SG++ NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 DEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+++ Y+ Q D + +VRE EL K
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD---- 101
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EM 337
N + LK L L + +SGGQK+R+ +
Sbjct: 102 ---------------AGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +VS +K G + L+GP SGK+TLL A+AG L PT SG + +G D+ + +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 67/263 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
LKD+S I G +T L+GP GK+TLL L L P G V +G D +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
V + R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM-----IRGISGGQKKRVTT 334
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA---- 204
Query: 390 DLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L D+S ++ G + LLGP +GKTT + + G + P SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
Y + T+ E I + ++ L L + D + +SGGQ++R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ LR+ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-11
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMDEFVPQ-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGTR 259
D+ + + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------H 121
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
+ AR+ L+ +GL D D
Sbjct: 122 GKGSRAEARKR----------------------------AVELLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGG ++RV M+ ALA L DE +T LD +T QI++ L+ ++
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQREL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L DVS ++PGR LLGP +GK+TL L G ++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
++ VS ++ G + LLGP +GKTT + L L PT SG T GHD+ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R + Q + E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
D L +GL D +++ SGG ++R+ +V L
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
F+DE + GLD T + + + + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I G L+GP SGK+TL+ + D SG + +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ G E+ +AA
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAAN--------- 116
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGP 341
A E I + L DT++G+ RG+ SGGQ++R+ ++
Sbjct: 117 -----AHE-----FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIIL 397
L +DE ++ LD+ + + L + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 74/294 (25%), Positives = 109/294 (37%), Gaps = 77/294 (26%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
+T L DVS I G + ++G +GK+TLL + PT SG+V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 221 EF--VPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVG--TRYEMLTELARREKA 272
R I QH N + TV E +AF GV + + EL
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--- 128
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ + KA Q +SGGQK+RV
Sbjct: 129 --------VGLSDKADRYPAQ------------------------------LSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ L+ IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-11
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 78/270 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L P+ SG++ ++G D+D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 PQR-TAAYISQH-----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV--IS-----LLQPA 385
+ ALA L +DE + LD S Q++N L+ + G IS + A
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA 497
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 -------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + P SG + NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK---------------VL 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
IA ++LG+D + + +SGG+++RV +V L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ L++ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFASMGFRCPKRKGVADFL 433
G E V F+ PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 60/247 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L ++ I G L+GP +GK+TLL + + PT SGT+ NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD----II 396
L DE + LD TT++I+N L++ I+ T V+ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHRVI 207
Query: 397 LLSDGQI 403
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +S VI+PG L+G SGK+TL+ + +P SG + +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q A E+A
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL----------- 443
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A D+ V L + DT +G+ + +SGGQ++R+ ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + + L + + T VI S ++ A D I+++ D
Sbjct: 491 LILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDD 542
Query: 401 GQIVYQGPRELVLE---FFA---SMGFR 422
G+IV +G +L +A +M FR
Sbjct: 543 GRIVERGTHNELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ + PG + LLG +GK+TL+ L+G +PT GT+T N + ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
M+ A L +GL V D V + +S K+ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N LR GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T+L D+S I+ G L L+G GKTTLL A+AG + ++G + D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R A++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD++ + + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 55/219 (25%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
+ + L+ILK V V+K G ++GP SGK+TLL LAG DP+ SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 D---MDE----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+DE + R ++ Q + I +T E +A +G + A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI---RGISGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 77/323 (23%), Positives = 119/323 (36%), Gaps = 67/323 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ ++ I G LLGP GKTT+L +AG P SG + +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q MTV E +AF R Q E+ R A
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA----------- 128
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKPKV 165
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD Q+ N L+ + G + + E + D I+++ DG+I
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQE-------VTSRKDQRQYWAHKEKPYRFV 456
G PRE+ + PK VA F+ E V R D+++ A+ E +
Sbjct: 225 QDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNI 275
Query: 457 TVQEFAEAFQSFHVGQKISDELR 479
V + GQK+ LR
Sbjct: 276 YVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 62/273 (22%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215
++ +T LKDVS + G + ++G +GK+TL+ + G PT SG+V +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVD 65
Query: 216 GHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G D+ +R I QH N + TV E +A E+A
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAGV 112
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
KA E V L+++GL D D +SGGQK
Sbjct: 113 PKAE-------------------IEERV--LELLELVGL---EDK--ADAYPAQLSGGQK 146
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
+RV + ALA L DE ++ LD TT I+ LR I+ G ++ +
Sbjct: 147 QRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD-INRELGLTIVLITHE 200
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
+ D + ++ G++V +G V E FA
Sbjct: 201 MEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 60/296 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
L D+S I G T L+G SGK+T+ + G L P + +T +G +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ ++ DN TV + +AF + V R EM+ I D D
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVLAD 130
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
V M DY D +SGGQK+RV G + V P
Sbjct: 131 VGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAVEP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ + +DE ++ LD + QI+ +R+ + + VIS+ E ++ D +++L DG
Sbjct: 163 KI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDG 219
Query: 402 QIVYQG-PRELV--LEFFASMGFRCP---------KRKGVADFLQEVTSRKDQRQY 445
+++ QG P E+ +E +G P K KG++ QE+ + + QY
Sbjct: 220 KLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969
+ R GY Q P T+ E L + AWL+
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 6e-10
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L D+S I+ G + +LGP +GK+TLL LAG L P+ SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-10
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
+LKD+S I+PG ++GP SGK+TL+ L DPT SG + +G D +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLD 399
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +SQ D + T+RE +A G E+ K A
Sbjct: 400 SLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF---- 447
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 448 ----------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNP 484
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD+ T I + L+ + T +I+ T D II+L +G+
Sbjct: 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLDNGR 540
Query: 403 IVYQGPRE 410
IV +G E
Sbjct: 541 IVERGTHE 548
|
Length = 567 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 45/249 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-----DMD 220
IL D+S + PG ++GP +GKTTLL L G+ P+ SG VT G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 221 EFVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ ++ +S H+ TVR+ + S +G E LT A +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTA-EDLAAAQWL--- 155
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
L++LG AD G +S G+++RV +
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + GLD Q++N L + A++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 399 SDGQIVYQG 407
+G++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---V 223
IL D+S IK T ++G SGK+TL L G SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ Y+ Q + +I ++ E L A+ + + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
TE E ISGGQK+R+ ++ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDIILLSDG 401
L +DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G
Sbjct: 632 VLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHG 684
Query: 402 QIVYQGP-RELVLE--FFASM 419
+I+ QG EL+ F+AS+
Sbjct: 685 KIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
HL + D++ + G + +LGP +GK+TLL +AG P SG + NG D
Sbjct: 13 HLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASP 67
Query: 224 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P +R + + Q +N +TV + + G+ P
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+K A + ++ +GL + +SGGQ++RV +V
Sbjct: 100 --LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + +++ + Q + ++ + + + D ++ L +G+
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 403 IVYQGP 408
I QG
Sbjct: 208 IAAQGS 213
|
Length = 231 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 77/287 (26%)
Query: 155 LRI-IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGT 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHDMDEFVPQRTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGTR 259
+ ++G D+ + A I Q D N + MT+ + +A R G G
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLRLHGKGLS 123
Query: 260 YEMLTELARRE-KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+ E A + GI PDP+ + Y
Sbjct: 124 KKEAKERAIELLELVGI-PDPE---------------RRLKSY---------------PH 152
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHIN 373
E+ SGG ++RV M+ ALA L DE +T LD + QI++ L++ +
Sbjct: 153 EL----SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQRE 202
Query: 374 SGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
GTA+I + T+DL D + ++ G+IV +GP E + +
Sbjct: 203 KGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L ++LGP GKTTLL +AG + P G++ NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALAL 345
L ++GL + I +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L ++ +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELL-LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 69/290 (23%), Positives = 105/290 (36%), Gaps = 66/290 (22%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MD 220
+ + DV+ I+ G +L+GP SGKTT L + ++PT SG + +G D +D
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLD 69
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R Y+ Q +TV E +A + G
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK---------------------- 107
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ D L ++GLD D +SGGQ++RV V
Sbjct: 108 ------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG-----VA 147
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE LD T Q+ ++ + G ++ + E L D I
Sbjct: 148 RALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRI 206
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
++ G+IV P E++ P V DF E S + R
Sbjct: 207 AVMDAGEIVQYDTPDEIL---------ANPANDFVEDFFGE--SERGLRL 245
|
Length = 309 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q D+ + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L +G + +SGG+KKRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
L +DE + GLD + Q++ LR + T VIS
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR-RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 2e-09
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS----GEIKVLGKDIKKEPEEV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFS 965
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
K+R + ++D+S I G + LG +GK+T L L G L PT SG V NG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNG 85
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
D P R + + M + L + E+L +
Sbjct: 86 KD-----PFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------I 128
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
PD D + + + D+ ++L L + + + R +S GQ+ R
Sbjct: 129 PD---DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAA 169
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395
++ P LF+DE + GLD + I L++ N LL T +FDDI
Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKE---YNEERQATVLL-----TTHIFDDIA 221
Query: 396 ------ILLSDGQIVYQGPRELVLEFFASM 419
+L+ GQ+V+ G + E F
Sbjct: 222 TLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 63/255 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DE-- 221
+ V+ ++ G + LGP +GKTT + L L PT SGT G+D+ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
VPQ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L++ L D + SGG ++R+
Sbjct: 109 -------------------------LELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
++ LF+DE +TGLD T I + +R G ++ E L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGVTILLTTHYMEEADKLCDRIAI 196
Query: 398 LSDGQIVYQG-PREL 411
+ G+I+ +G P EL
Sbjct: 197 IDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 49/240 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
L +VS + GR+ LGP +GK+T + + G L P SG+V G D+ + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
MK + + +I +++GL +G +S G ++RV + ++
Sbjct: 105 MKGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N ++ I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-09
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LK+ + + G +LG SGK+TLL LAG DP G++T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
+DE + GLD T Q++ L + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 49/216 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
T+ D+S + G + GP +GKTTLL LAG L P +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Y+ E+T E L F R G G + E + AG+
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL-------- 123
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
D + +S GQ++RV + + PA
Sbjct: 124 ---------------------------------EDLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE T LD + + H G V+
Sbjct: 151 LWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 65/257 (25%), Positives = 95/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG++ +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASM 419
Q+ L+ I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFRCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 65/261 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+LKD++ IKPG ++GP +GKTTL+ L DP G + +G D+
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 YMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
++A G ++ L G DT++G+ G +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
L +DE ++ +D+ T I L + + G I S ++ A D
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------D 205
Query: 394 DIILLSDGQIVYQGPRELVLE 414
I++L DG+I+ +G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRD 69
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P R Y+ E++ E L F A G G + + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D +S GQ++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + LR H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG PT SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y+ Q D + +TV + +A +G RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------ 111
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++GL D +SGG ++RV A+A
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 50/234 (21%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G + ++GP +GK+TLL +AG ++P SG++ N P QR + + Q +N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTGEMMVGPALALFMDEISTG 353
D + D + R +SGGQ++RV +V P L +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD +++ ++Q T ++ + + + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 73/286 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD 220
+LK +S ++ G + +++GP SGK+TLL L G +P SG++T +G D
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 221 EFVPQRT-AAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R + Q N +TV E TLA ++ + KA +
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLSKAEARE- 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
KA+ L+ +GL AD D +SGGQ++RV
Sbjct: 116 --------KALE------------LLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARA 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-F--- 392
+ + P + LF DE ++ LD ++++ ++ G +I + T+++ F
Sbjct: 151 LAMDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIV------THEMGFARE 201
Query: 393 --DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF + PK + FL ++
Sbjct: 202 VADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 58/288 (20%)
Query: 154 YLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGT 211
YL I +KR T LKD+S +K G LLGP GKTTLL +AG T +GT
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGT 60
Query: 212 VTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ G D+ PQ R + Q +TV + +A+ + +G+G E
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-------EVAE 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L ++GL + +SGGQ++
Sbjct: 114 RVA---------------------------ELLDLVGL-----PGSERKYPGQLSGGQQQ 141
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + P L L +DE + LD+ + +RQ + G I + E
Sbjct: 142 RVALARALATSPGL-LLLDEPLSALDARVREHLRTEIRQ-LQRRLGVTTIMVTHDQEEAL 199
Query: 390 DLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
+ D I++++ G I G P+E+ +R P VADF+ EV
Sbjct: 200 SMADRIVVMNHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
IL ++S IKPG + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A + DP + +
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGMSM 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
EA + + + L DT+VG++ G+SGGQ++R+ ++
Sbjct: 106 E------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+D++ ++ G L ++LGP GKTTLL +AG + G++T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIA-------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ LK +GL+ I +SGGQ++RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 65/259 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
++ +S ++ G LLGP +GKTT L L G P +G+++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREKAAG 274
R + Q DN + TVRE L R G+ L E A+ E A
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA- 132
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
D + +SGG K+R+T
Sbjct: 133 -------------------------------------------DAKVGELSGGMKRRLTL 149
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE +TGLD + LR + G ++ E L D
Sbjct: 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERLCDR 207
Query: 395 IILLSDGQIVYQG-PRELV 412
+ ++ +G+ + +G P L+
Sbjct: 208 LCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L DVS I+ G L GP +GKTTLL L G L P+ G V G D++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
P L L DE + LD + +I++ L++ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ ++S + PG + LLGP +GKTT + G L+PT G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 876 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 929
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 930 SGYP 933
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--- 220
T+L DVS I+ G + LLGP SGK+TLL +AG +P SG++ +G D+
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68
Query: 221 -EFVPQRTA-AYISQHDNHIGEMTVRETLAF 249
E P R + Q +TV E +A
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-08
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
+L D+S +K G + LGP +GKTT + + G + P SG +T++G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R A I + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PA 342
L V+GL + ++G S G K+R+ ++G P
Sbjct: 110 ------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPD 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDIILLSD 400
L L +DE + GLD ++ + ++ T +IS LL E + D I +++
Sbjct: 147 L-LILDEPTNGLDPDGIKELRELIL-SLRDQGITVLISSHLLS---EIQKVADRIGIINK 201
Query: 401 GQIVYQG 407
G+++ +G
Sbjct: 202 GKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 9e-08
Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+ ++++ I G T ++GP GK+TLL L+ + P G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
KA+ G IT + D+ + +SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELV 412
IV QG P+E+V
Sbjct: 222 IVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
+ +++ I G +L+GP SGKTT + + ++PT SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 225 QRTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ + + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQE 435
++ +G+IV G P E+ R P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 54/256 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L+ +S ++ G ++GP SGK+TL + G PT SG+V +G D+ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ Y+ Q D + TV E +A R+ G DP+
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RF-------------GENADPE-- 422
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
K I EA + + +L L DT++G +SGGQ++R+ + G
Sbjct: 423 ---KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDP 473
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIIL 397
+ +DE ++ LD + N ++ + T V+ SLL D I++
Sbjct: 474 KLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPSLLGCV-------DKILV 525
Query: 398 LSDGQIVYQGPRELVL 413
L DG+I G R+ VL
Sbjct: 526 LQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 52/276 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+L D+S I G++ LLGP SGKTTLL +AG T SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R ++ QH MTV + +AF LT L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
+ L+++ L AD +SGGQK+RV + V P
Sbjct: 112 AIKAKVTQ-----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE LD+ ++ LRQ +H + + E ++ D ++++S G
Sbjct: 156 QI-LLLDEPFGALDAQVRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
Query: 402 QIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
I G P ++ +R P + V +F+ EV
Sbjct: 214 NIEQAGTPDQV---------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL ++S ++ G L+ GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGG+K+R++ +
Sbjct: 115 ---AIFLDD-----------LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
L +DEI++ LD S VN
Sbjct: 157 KVLLLDEITSALDESNK-HNVN 177
|
Length = 225 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 51/205 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q ++V + L F+ A +K
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------PATLK-------- 107
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
G + L+ GLD +SGGQ+ RV ++ A
Sbjct: 108 -------GNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQN 369
L +DE + LD + LR
Sbjct: 156 LLLDEPFSRLDVA--------LRDQ 172
|
Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 938
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 939 FARISGYCEQ 948
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 936 QETFARISGYCEQ 948
+ AR Y Q
Sbjct: 70 E--LARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 71/261 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSG-TVTYNGHDMDEFV 223
LK ++ + G + LLGP +GK+TL L G L PT + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGGQKKRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAVISLLQPAPETYDL------ 391
+ + +DE ++GLD QI+ L ++ I T +IS T+D+
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TIIIS-------THDVDLVPVY 203
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D + ++SDG+I+ +G P+E+
Sbjct: 204 ADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 55/259 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K+ +L +VS I+ G LLG GK+TL L G P GTV++ G D+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLY 76
Query: 221 EFVP------QRTAAYISQHDNHIG----EMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + MTVR+ + R L E ++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDESEQKA 128
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A + L ++GL ++ D++ R +SGGQ +
Sbjct: 129 RIAEL---------------------------LDMVGLR--SEDA--DKLPRQLSGGQLQ 157
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
R+ + V P L + +DE + LD I+ LR+ + GTA + +
Sbjct: 158 RINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLVQ 215
Query: 390 DLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 216 SFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G E+L EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ EA L LG D V +SGG ++RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLD 355
L +DE + LD
Sbjct: 173 DLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--------MD 220
+DVS + PG + ++G SGK+TLL LAG+L P GT TY +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
E +R ++ Q+ M V R +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
Y AT D+ +V ++ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ LR + + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 61/212 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHD-----M 219
LKD++ I ++T L+GP GK+TLL L L P +V G V +G + +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIKPD 278
D +R + Q N M++ + +A+ R G+ + + L E+ K A
Sbjct: 82 DVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKA----- 133
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTG 335
A+ E V D + + G+SGGQ++R+
Sbjct: 134 --------ALWDE------------------------VKDRLHKSALGLSGGQQQRLC-- 159
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 160 ---IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 68/277 (24%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
K L +VS I+ G ++G SGK+TL LAG P+ SG++ +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 218 DMDEFVPQRTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ-- 127
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
G+ P + ++ G GQ++R
Sbjct: 128 -VGLPPS------------------FLDRRPHELSG-------------------GQRQR 149
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQN--------IHINSGTAVISLL 382
+ ++ P L L +DE ++ LD S QI+N L + + I+ A++
Sbjct: 150 IAIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV--- 205
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
+ D I ++ +GQIV GP E +L +
Sbjct: 206 ------EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ VS + G +T +LG GKTTLL L G L SG++ +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 939
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 940 ARISGYCEQN 949
R G QN
Sbjct: 74 RRKVGLVFQN 83
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L VS P +T L+GP SGK+TLL ++ L+P + ++G++ YNGH++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ E + + R +G+ + + + + K A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++ A+ G+SGGQ++RV ++
Sbjct: 140 DRLHDSAL----------------------------------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V+ ++ G + L+GP GKTT L A+ L P +V+G + +G D+ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N M+V + + + G+ R + L E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ +K AT G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + GTV + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
A GE +AF GV ++ + T L G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPA 342
+++ + K+ L + D + + G SGG+KKR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDE-FVPQRT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ LR+ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G +T ++GP SGK+TLL +AG P SG V NG D+ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV + + G+ ++ E R+ + K + E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+SGG+++RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ ++++ L ++H + V+ + + L ++ L +G+I QG
Sbjct: 162 ALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L PT SGT+ +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP 224
L D+ +K G T L+G SGK+TLL L G L PT + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 QRTAAYISQH--DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L ++IH SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 435
I+ G P ++ E F + PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 77/285 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I ++T L+GP GK+TLL +L L P +++ G V ++G D+ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
+R + Q N M++ + +A+ R G+ + E L E+ K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAAL-WDE 133
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D L L G+SGGQ++R+ +
Sbjct: 134 VKD-------------------RLHDSAL--------------GLSGGQQQRLC-----I 155
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVI---SLLQPAPET 388
ALA L +DE ++ LD T +I + L++ T VI ++ Q A +
Sbjct: 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAARIS 210
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
D DG++V GP E + F PK K D++
Sbjct: 211 ----DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL ++S ++ G + GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-- 112
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
A+ L L D+++ + I +SGG+K+R+ + P
Sbjct: 113 ---ALD------------LLARFALP---DSIL-TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + + + AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 86/298 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG +GK+TL L G L P SG + ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
Y + G M +RE+ VG ++ DPD ++
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTM---VGDEMIR-GI-----------SGGQKKRV 332
A+V D + L + D + V + + R GI S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKD 441
D++ ++ +G+++ QG P+E+ E + R P R G L E+ KD
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DPT G++ +G D+ D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T ++ +SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 V 404
V
Sbjct: 211 V 211
|
Length = 241 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ I+ G L+G GK+TLL ++G PT SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
DE LD+ T + L Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 62/283 (21%), Positives = 100/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD----- 218
L L +VS I G ++G SGKTT + L L P +GT+ + D
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPQRTAA----YISQHDNHIG-----------EMTVRETLAFSARCQG 255
+++ V Q+T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315
V +EA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMIR---GISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
+ R +SGGQK+RV G + + P L DE + GLD +I+ N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLN 212
Query: 372 INSGTAVISLLQPAPETYDLFDDI-------ILLSDGQIVYQG 407
T ++ T+DL D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 929 ISGYPKKQ 936
++ +K+
Sbjct: 69 LTKLSEKE 76
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 934
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 935 KQETFARISGYCEQNDIHSPFV---TIYESLLF 964
E + + + QN P++ TI E++L
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILL 417
|
Length = 559 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 67/255 (26%), Positives = 96/255 (37%), Gaps = 55/255 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ D+S I G LLGP +GK+T+ L G + P G +T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ T RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----------REIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L +DE +TGLD I LR + G ++ E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 401 GQIVYQG-PRELVLE 414
G+ + +G P L+ E
Sbjct: 211 GRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHD 218
ILK V+ IK G + L+GP SGK+TL + G P +V G + + G D
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 51/200 (25%), Positives = 71/200 (35%), Gaps = 62/200 (31%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ +S + G LLGP +GK+T+ + G P +G +T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTR-----YEMLTELARREKAAGI 275
+ Q DN E TVRE L R G+ TR L E AR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK--- 165
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
AD V D +SGG K+R+T
Sbjct: 166 ------------------------------------ADARVSD-----LSGGMKRRLTLA 184
Query: 336 EMMVGPALALFMDEISTGLD 355
++ L +DE +TGLD
Sbjct: 185 RALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
ILK +S ++ G ++GP SGK+TL L G PT SG+V +G D+ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDR-- 405
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPDPDIDVYM 285
Q HIG + Q V EL A I + + D
Sbjct: 406 -----EQLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPE- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALA 344
K I EA + + +L L DT +G+ +SGGQ++R+ + G P L
Sbjct: 441 KVI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL- 493
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIILLS 399
+ +DE ++ LDS + + GT V+ S L D I++L
Sbjct: 494 VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQ 545
Query: 400 DGQIVYQGPRELVL 413
DG+I GPRE VL
Sbjct: 546 DGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L V ++ G L L+GP +GKTTLL A+ G L PT +GTV G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR---REKAAGIKPDPDID 282
+A S+ + + T +L+F + V E+ R R +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V +A+ G D + +SGG+++RV +
Sbjct: 120 V-ERAMERTGVAQFA--------------------DRPVTSLSGGERQRVLLARALAQAT 158
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + + +R+ ++ G ++ + D+++LL+DG+
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRR--LVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216
Query: 403 IVYQGPRELVL 413
+ GP VL
Sbjct: 217 VRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---LALAGKLDPTLKVSGTVTYNGHDMDE 221
LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAP-- 112
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVG 340
V + +A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 113 -VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + LF DE+++ LD +++N +R+ + T ++ + + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV QG P E+ FR PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 76/276 (27%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
IL +S I G+ ++G +GK+T+L L D SG++T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 223 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
VPQ T + T+A++ + E + A +AA
Sbjct: 335 LRRAIGIVPQDTVLFND-------------TIAYNIKYGRPDATAEEVGAAA---EAA-- 376
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVT 333
Q + I L DT VG+ RG +SGG+K+RV
Sbjct: 377 -----------------QIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVA 409
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
++ L +DE ++ LD+ T I LR+ T VI S + A
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLSTIIDA---- 464
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE---FFASMGFR 422
D+II+L +G+IV +G E +L +A M R
Sbjct: 465 ---DEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVPQRTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ H I E+T E L F R G G + LA+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L ++ ++PG L+GP +GK+TL L DP SG + +G D+ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP-DIDVY 284
R + D + +V E + + +PD D +V
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPDATDEEVE 447
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A A E + L DT +G+ + +SGGQ++R+ ++ A
Sbjct: 448 AAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPI 497
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 498 LLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMDQ 549
Query: 401 GQIVYQG 407
G+IV QG
Sbjct: 550 GRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 66/248 (26%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP---TLKVSGTVTYNGHDMDEFVPQRTAAYISQ 233
G L LLGP +GKTTLL A+ G + P T+KV+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 937 ETFAR 941
R
Sbjct: 76 LAAFR 80
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q+ A + I + +AFS R GV E+ RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D + + + + I+ +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQH-----------------------FRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLR----QNIHINSGTAVISLLQPAPETYDLFDDII 396
A L +DE + GLD + Q++ +R Q H+ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG 407
+L GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ 936
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLAD 68
|
Length = 258 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 70/282 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ DVS ++ G + +++G SGK+TLL + ++PT SG V +G D+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV R E+A
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERA-------- 141
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+A+ G E + +SGG ++RV +
Sbjct: 142 ----AEALELVGLEGW--------------------EHKYPDELSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE + LD ++ + L + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG++ + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG----LLPGSGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+SQ M V ++ LT ++
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI---SGG--QKKRVTTGEMMVGPA 342
A+ + +V + D++ R + SGG Q+ R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK ++ I G + ++GP SGK+TL +AG P K+ G + + G + + P+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA--RREKAAGIKPDPDIDV 283
A H+G LAF + G LA + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-MVGPA 342
+++ I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDII 396
LA+ +DE +GLD I + N + S ++I LL Y D +
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITHYQRLLD-----YIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLE 414
++ +G+I+ G EL E
Sbjct: 224 VMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 58/256 (22%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----V 223
LKDVS + G ++G SGK+TL L G L P +GT+T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ DN TV++ +AF GV R EM+ R A ++ V
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA-LR-----QV 128
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
M+ E R +SGGQK+RV ++
Sbjct: 129 GMEDFLNR---------------------------EPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIILL 398
+ +DE ++ LD +++ +RQ + G V+S+ T+DL D +I++
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSI------THDLDEAAQADRVIVM 213
Query: 399 SDGQIVYQGPRELVLE 414
+ G+I+ +G E + +
Sbjct: 214 NKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +G V NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R Y+ ++V E L F + ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 942 ISGYCEQN 949
I GY Q
Sbjct: 70 I-GYVPQR 76
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 54/247 (21%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK + +K G + +++GP SGK+TLL + +P SGT+ +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 Q-----RTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Q N +TV E TLA ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA--------------PIKVKGMSKA----- 110
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
EA L+ +GL A D +SGGQ++RV
Sbjct: 111 ----------------EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARA 149
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ + P + LF DE ++ LD ++++ ++ G ++ + ++ D +I
Sbjct: 150 LAMNPKVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVI 206
Query: 397 LLSDGQI 403
+ DG+I
Sbjct: 207 FMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE 937
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRA 68
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 60/277 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D S ++ G + +++G SGK+TL+ L ++PT G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERA-------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 82/266 (30%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ +LK +S IK G LLG GK+TLL L DP G + NG + ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY 407
Query: 223 -----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
V QR H+ T+R+ L LA
Sbjct: 408 SEAALRQAISVVSQRV---------HLFSATLRDNLL-----------------LA---- 437
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-----GLDVCADTMVGDEMIRGISG 326
P+ A++ V+ L+ L GL + +G E R +SG
Sbjct: 438 ----APN----------ASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSG 478
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386
G+++R+ ++ A L +DE + GLD+ T QI+ L + H + T ++
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI------ 530
Query: 387 ETYDL-----FDDIILLSDGQIVYQG 407
T+ L FD I ++ +GQI+ QG
Sbjct: 531 -THRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD--EFVP--QRTA 228
P R +T L GP SGKT+L+ +AG P G + NG D + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I + LR I+I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 58/266 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP 224
T++ +++ IK G + LLGP GKTT+L +AG PT G + +G D+ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q M++ E + + + GV E +R K A
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA----------- 120
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++ L D V D+ ISGGQ++RV ++ P +
Sbjct: 121 ------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKV 157
Query: 344 ALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
LF DE + LD++ + + + L+Q +I S + + E + + D +I+++
Sbjct: 158 LLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSDTVIVMNK 212
Query: 401 GQIVYQG-PRELVL----EFFAS-MG 420
G+I+ G P+EL F AS MG
Sbjct: 213 GKIMQIGSPQELYRQPASRFMASFMG 238
|
Length = 351 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 50/267 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP-- 224
L +V+ I+ G L+G SGK+TL+ L G L PT SG + +G D+ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --QRTAAYISQHDNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFASMGFRCPK 425
+ QG PRE+ +E S+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
LV L+ VS + RPG + L+G +GAGKTTL ++++G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 2e-05
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 940 ARISGYCEQNDIHSPFV---TIYESLL 963
+ Y Q+ PF+ TI E++L
Sbjct: 75 RKNIAYVPQD----PFLFSGTIRENIL 97
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 323 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 415
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG + +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S GQKKR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LD 355
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
+L V+ I +T L+GP SGK+TLL +L P +VSG V +G D MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q N I +++ E +A + L L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
++ + Q + + D LD A + SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 44/203 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNG-----HDMD 220
L D++ I ++T L+GP GK+T L L L +K+ G V +G D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ + +A+ R G+ + E+
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ I ++ LK L D D + + +SGGQ++R+ +
Sbjct: 121 ---------------DKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIA 163
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 164 VKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 156 RIIPSKKRHL-----TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKV 208
+II S HL LK + +T L+GP GK+T L L L P + +
Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 209 SGTVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
+G V+ G + D ++ + Q N ++ E + + R GV
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV------- 115
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
D V +A+ T ++A + + + E
Sbjct: 116 ---------------KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALS 148
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+SGGQ++RV ++ + +DE ++ LD ++ QI N L
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
|
Length = 252 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 50/253 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D I G + +++G SGK+T + L ++PT +G + +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
V ++ + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + L++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQGPRELVL 413
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
+ R G Q+ P +T+ E++ F LR P+ + R
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR 110
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYI 231
+ G+ L+GP +GKT+LL AL G L G++ NG ++ E P+ + +++
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATE 291
Q + + T+R+ + PD + +A+
Sbjct: 429 GQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL--- 459
Query: 292 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351
+ A V L GLD T +GD+ G+S GQ +R+ ++ P L +DE +
Sbjct: 460 -ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPT 513
Query: 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 514 ASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 937
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS----GRVRLDGADISQWDPN 72
Query: 938 TFARISGYCEQNDI 951
GY Q+D
Sbjct: 73 ELGDHVGYLPQDDE 86
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
+ DVS K G+ ++GP +GKTTL+ L DPT G + +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
N + ++R+++A + G + R G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAG------LFNRSIRENIRLGREGATDEEVY--- 442
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
E +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 443 ---EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCLRQN 369
DE ++ LD T ++ ++ LR+N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L++VS I+PG ++GP SGK+TL + G L PT SG V +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDP-- 71
Query: 227 TAAYISQHDNHIG 239
++ +H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
T + G SGKTTL+ +AG P + ++G ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
+ + ++ + + + LKD+S I G ++G +GK+TLL
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLK 71
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+AG PT SG V G + A I E+T RE + G+
Sbjct: 72 LIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRGLILGL 119
Query: 257 GTRYEM 262
TR E+
Sbjct: 120 -TRKEI 124
|
Length = 249 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L+GVS RPG + AL+G +GAGK+TLM +L+G G I
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
|
Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---- 216
K R + LK +S I+ G + +GP +GKTT L L+G L PT SG V G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPW 86
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTEL 266
+F+ +R Q ++ V ++ A + R + L+EL
Sbjct: 87 KRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 66/258 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L GP +GK+TLL + G+ PT G + NGHD + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHD----LSRL 69
Query: 227 TAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
I IG + TV E +A R G R E+ RR
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L ++GL A + +SGG+++RV
Sbjct: 122 --------------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD-- 394
+V L DE + LD +++I+ + I+ GT V+ A +L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLF-EEIN-RLGTTVLM----ATHDLELVNRMR 204
Query: 395 --IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 205 HRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935
L+ VS R G + +L G +GAGK+TLM VL+G G G I G +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72
|
Length = 506 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
L D+S + PG L +++GP +GKTT++ + GK P G+V + G D + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYIS 232
++PG LLG +GKTT L G T SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 938
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFS 965
A+ Y Q+ +T+YE +L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLG 100
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L+ VS G L AL+G SG+GKTTL+ ++AG R G I
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 18/227 (7%)
Query: 504 LLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562
L+ + ++L+ + I LI + + L R + D F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF--------PPWAYAIPSWILKIPVSFL 614
++++ FS S +++R+F + + + V+ L
Sbjct: 95 ILMSVLFSGIFSFSSA-------LFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASL 147
Query: 615 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 674
+ + + +++G LLL + + + A+ G+
Sbjct: 148 IAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLL 207
Query: 675 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
+L L L G E + W + + +PLTYA +A+ W
Sbjct: 208 ILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L+ +S G + AL G +GAGKTTL +LAG +++ G+I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS----GSILLNGKPIKAKERR 70
Query: 941 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
+ GY Q+ D ++ E LL L+ + + V
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAETV 110
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 7e-05
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 72/260 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L VS ++PG + LLG +GK+TL+ L+G P SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 228 AAY----ISQHDNHIGEMTVRETLAFS---ARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A + Q + + ++V E + R G+ R M R +A +
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL----- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
L LGLD+ DT+VGD +S Q++ V E
Sbjct: 130 ----------------------LARLGLDIDPDTLVGD-----LSIAQRQMV---EIARA 159
Query: 337 MMVGPALALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAV--IS--LLQPAPETY 389
+ + L +DE + L T F ++ L+ G A+ IS L E +
Sbjct: 160 LSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVF 209
Query: 390 DLFDDIILLSDGQIVYQGPR 409
++ D I +L DG++V P
Sbjct: 210 EIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L +++ I G+LT+++G GK++LLLA+ G++ + G V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 QRT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTG 335
D D+ L T +G+ RGI SGGQ++R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 941 RISGYCEQNDIHSPFVTIYESLLF 964
R G Q+ P +T+ E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 943 SGYCEQN 949
GY Q
Sbjct: 77 IGYVPQK 83
|
Length = 254 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 808 GSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVD 866
G+ H G +++++L A RP K V SL F V +
Sbjct: 281 GAQYHARADG--------VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA-- 330
Query: 867 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
+ L VS PG AL+G SGAGK+TL+++L G
Sbjct: 331 ----------YPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG 370
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIT 924
E K +L GV+ + G + A+MG +G+GK+TL + G T G I
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
++ VS R G L+G SG+GK+TL +LAG + G I
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR++ + VS IK G L+G GK+TL + G +PT SG + + G D+
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDIT 78
Query: 221 EF 222
+
Sbjct: 79 KL 80
|
Length = 268 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
IL DVS I+PG ++GP SGK+TLL L G P SG+V Y+G D+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLA 518
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFV 223
L D++ I G L ++G GKT+L+ A+ G+L ++ + G+V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP-DPDID 282
PQ + I TVRE + F G+ +E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ TE E V ISGGQK+RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 343 LALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
D+ + LD+ Q+ + C++ + + V + L P L D IIL+S+G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEG 815
Query: 402 QIVYQG 407
I +G
Sbjct: 816 MIKEEG 821
|
Length = 1495 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 68/260 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
LK +S I G T LLGP +GK+TLLL L G P G V G +++ +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV 77
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ D+ + TV + +AF G+ E+ RR + A +K V
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA-LKA-----V 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
M + Y+L S GQKKRV G + + P
Sbjct: 127 RMWDFRDK-------PPYHL---------------------SYGQKKRVAIAGVLAMDPD 158
Query: 343 LALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FD 393
+ + +DE LD T +I++ L G VI T+D+ D
Sbjct: 159 V-IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIV------ATHDVDLAAEWAD 206
Query: 394 DIILLSDGQIVYQGPRELVL 413
+I+L +G+++ +G + L+
Sbjct: 207 QVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG SG++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE--MMVG 340
K + L LD D + +SGG+ +RV + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTA 228
DVS I G + LLG GK+TLL LAG PT +G + +G D+ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPI 93
Query: 229 AYISQHDNHIGEMTVRETLAF 249
+ Q MTV + +AF
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF 114
|
Length = 377 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K +LK VS I G + ++G SGK+TLL L G +PT SG V +NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 59/250 (23%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMD 220
+L+DVS + PG +T L+GP SGK+T++ L P G V +G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-RYEMLTELARREKAAGIKPDP 279
+ + Q ++++ +A+ G+ + +E + E A++ A
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF---- 132
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEM 337
+ L DT VG+ +G +SGGQK+RV
Sbjct: 133 -------------------------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARA 164
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFD 393
++ L +DE ++ LD+ + Q V + VI S ++ A D
Sbjct: 165 LIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA-------D 216
Query: 394 DIILLSDGQI 403
I++L G+I
Sbjct: 217 QILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 61/257 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFV 223
LK+VS I G +LG SGK+T+ L G L P +K+ G +T + ++ E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLKEI- 81
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ I Q+ DN TV + +AF G + + +K
Sbjct: 82 -RKKIGIIFQNPDNQFIGATVEDDIAF-------GLENKKVP----PKK----------- 118
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
MK I I D KV D D+ + +SGGQK+RV ++ + P
Sbjct: 119 --MKDI---------IDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIASVLALNP 161
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-----LFDDII 396
+ +F DE ++ LD +I + + +IS+ T+D L D +I
Sbjct: 162 EIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISI------THDMDEAILADKVI 213
Query: 397 LLSDGQIVYQG-PRELV 412
+ S+G+++ QG P+E++
Sbjct: 214 VFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L +S G++T L+G SGK+TLL L P+ G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
G + + ++GL A +V +SGG+++R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
LL+GVS RPG + A++G +GAGK+TL+ L+G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG 49
|
Length = 259 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 977
R C Q D H T+ E+L + P+ E
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDE 439
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 38/105 (36%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 945
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 946 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSPRVLG 990
C Q D +T E L A LR P E KV S + LG
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPA--EEIEKVANWSIQSLG 2059
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDN 236
++T LG +GKTT L L G L PT SGTV G D++ +++ QH+
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV E + F A+ +G +EA
Sbjct: 1014 LFHHLTVAEHILFYAQLKG----------------------------------RSWEEAQ 1039
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + L+ GL +E + +SGG +++++ VG A + +DE ++G+D
Sbjct: 1040 LEMEAMLEDTGLH-----HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ I + L + SG +I E L D I ++S G++ G
Sbjct: 1095 YSRRSIWDLL---LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 49/215 (22%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K IL D++ I+ G++ ++G SGK+TLL + G L+ SG V NG +
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETP 63
Query: 221 EFVPQR-------TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
++ Y+ Q+ I TV E L +L
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENL-----------------DLGL----- 101
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
Y K E +E L+ +GL++ + + +SGG+++RV
Sbjct: 102 ---------KYKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
++ P + DE + LD ++++ L +
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S I PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWG--------ST 62
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 63 VKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
+ LKDVS + G L+G +GK+TLL LAG P SGTVT G
Sbjct: 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
HL + D++ ++ G +LGP +GK+TLL +AG L P SG++T NG D
Sbjct: 12 HHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTT 66
Query: 223 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
P +R + + Q +N +TV + + G+G G+K +
Sbjct: 67 PPSRRPVSMLFQENNLFSHLTVAQNI-------GLGL-------------NPGLKLNAAQ 106
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ AIA + +G++ + G +SGGQ++RV +V
Sbjct: 107 REKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL----------QPAPETYDL 391
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS--- 200
Query: 392 FDDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ----LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 149 EDILNYLRI---IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--- 202
ED+ N R+ I K ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63
Query: 203 DPTLKVSGTVTYNGHD---MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
D +KV G V Y G D +D ++ + Q N +++ + +A+ + G+ +
Sbjct: 64 DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK 123
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
E+ + + G+ +VY + + Q
Sbjct: 124 REIKKIVEECLRKVGLWK----EVYDRLNSPASQ-------------------------- 153
Query: 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+SGGQ++R+T + L MDE ++ +D + I + + + + A++
Sbjct: 154 ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAIV 206
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + + D + L +G++V G
Sbjct: 207 IVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 152 LNYLRII--PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L+ L +S I G ++G +GK+TLL A+AG L PT S
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---S 60
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQ-----HDNHIGEMTVRETLAFSARCQG 255
G + +G D+ + + A +++ E+T+ E LA A +G
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL-AESRG 110
|
Length = 263 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L DVS +KPG++ LLGP +GK+TL+ + G + P G + NG +VPQ+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 73/260 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIG--EMTVRE-------TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
A ++ D I E TVR+ T+ + +L R K A I
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA--------------DLVRACKDAAIH- 595
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DV G +A + E +SGGQ++R+
Sbjct: 596 ----DVITSR--PGGYDAELA--------------------EGGANLSGGQRQRLEIARA 629
Query: 338 MVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVI-----SLLQPAPETYD 390
+V P++ L +DE ++ LD T I + LR+ G T +I S ++
Sbjct: 630 LVRNPSI-LILDEATSALDPETEKIIDDNLRRR-----GCTCIIVAHRLSTIRDC----- 678
Query: 391 LFDDIILLSDGQIVYQGPRE 410
D+II+L G++V +G E
Sbjct: 679 --DEIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 62/278 (22%), Positives = 106/278 (38%), Gaps = 57/278 (20%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ + L +VS + G++ ++G +GK+TL+ + PT SG+V +G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ T A I QH N + TV +A EL K
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------LELDNTPK----- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
E L ++GL D +SGGQK+RV
Sbjct: 115 ----------------DEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ L DE ++ LD +TT I+ L++ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++S+G+++ QG V E F+ PK F++
Sbjct: 213 VISNGELIEQGT---VSEIFSH-----PKTPLAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 60/194 (30%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L P SGTV
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVG--------E 383
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y QH + + T E L+E PD D
Sbjct: 384 TVKIGYFDQHRDELDPDK---------------TVLEELSEGF-----------PDGD-- 415
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMVGP 341
E V YL G G++ + +SGG+K R+ ++++ P
Sbjct: 416 ---------EQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 342 ALALFMDEISTGLD 355
L +DE + LD
Sbjct: 458 PNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 835 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 889
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITG-NITISGYPKKQET 938
G A++G +GAGK+TL+ +LAG G G + I + + ++
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396
|
Length = 530 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
LK ++ I+ ++T L+GP GK+T L L L P++K+ G V +G D +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
++ + Q N M++ + +A+ R G+ + + L E+ + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKK-LDEIVEKSLKGAALWDEV 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ A+ G+SGGQ++R + +
Sbjct: 137 KDRLKKSAL----------------------------------GLSGGQQQR-----LCI 157
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI 362
ALA L MDE ++ LD +T +I
Sbjct: 158 ARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQ 225
+KDVS +T ++GP GK+T+L ++ D P+ +V+G + + D+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI------ 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP--DIDV 283
+D + +++R RR KP+P + +
Sbjct: 74 --------YDRGVDPVSIR-----------------------RRVGMVFQKPNPFPAMSI 102
Query: 284 YMKAIA-------TEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTG 335
Y IA EA+ I + LK + L D D + + M +SGGQ++R+
Sbjct: 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIA 160
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +++ IKPG ++GP SGK+TL L P G V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A +P
Sbjct: 529 LRRQMGVVLQ-ENVLFSRSIRDNIALC---------------------------NPGAPF 560
Query: 284 -YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ A + I L +T VG E +SGGQ++R+ +VG
Sbjct: 561 EHVIHAAKLAGAHDFI-------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNP 612
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +R+ I G VI + T D II+L GQ
Sbjct: 613 RILIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQ 668
Query: 403 IVYQGPRELVL 413
I G E +L
Sbjct: 669 IAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYP 933
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74
|
Length = 249 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205
PG + L++GPP SGKTTL ALA +L P
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V I G++T L+GP GK+T+L +L L + G V ++G D+ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +AF AR G + L E + R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L +N VS RPG + L+G +GAGKTTL +++ G + + G +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 57/260 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KR ++ VS +K G + LLGP +GKTT + G + P SG + +G D+
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDIT 65
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV E + +G+ + R EK
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------REEKL---- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
+ L+ + + +SGG+++RV
Sbjct: 115 -----------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIAR 146
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVISLLQPAPETYDLFD 393
+ P L +DE G+D I ++ I I + G V+ ET + D
Sbjct: 147 ALATNPKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 394 DIILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 202 RAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L++V+ +KPG++ + GP SGK+TLL + D + G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
HD + ++ + + +R V + ++ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPD------- 415
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGPAL 343
A E + + + +L L DT VG+ RG+ SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDIIL 397
L +D+ + +D T QI++ LRQ G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVG------TRYEMLTELARREKAAGIKPDPD 280
+++ H I G+G T +E LT E A D
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNR--DKS 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ + A + + D L +GL D + +S GQK+ + G ++
Sbjct: 112 VFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE G+ + T + L+
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
L DV+ +K G ++LG SGK+T+ + L P+ G V +G D + +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWD 82
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A + Q+ DN I V E +AF E L GI P+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPPE---- 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG----ISGGQKKRVT-TGEM 337
E D LK +G+ E R +SGGQK+RV G +
Sbjct: 120 -----------EIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGIL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+ P +F DE + LD S ++VN +++ ++ G +I + E + D II+
Sbjct: 160 AMRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIV 216
Query: 398 LSDGQIVYQG-PREL 411
+ G++V +G P+E+
Sbjct: 217 MDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
R QN P +T+YE++ F LR P+ + + R
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR 113
|
Length = 338 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932
L VS + PG AL+G SGAGK+TL+ L G +G++ I G
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGT 63
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQ 936
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
|
Length = 258 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 937
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 938 TFARISGYCEQND 950
+ R GY Q+
Sbjct: 544 SLRRQVGYVLQDP 556
|
Length = 709 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 932 YP 933
P
Sbjct: 72 QP 73
|
Length = 228 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917
LN +S PG L ++G +GAGKTT+MDV+ G+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
+V + VS + + G + AL+G +GAGK+TLM +L G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG 52
|
Length = 501 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T + ++S + + LLGP +GK+TLL + G L PT SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 157 IIPSKKRHLT-----ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVS 209
II +K HL+ L +S + LT L+GP GK+T L L D +K++
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G + + G ++ Y S+ D + E+ + F Q + + +A
Sbjct: 64 GEIKFEGQNI----------YGSKMD--LVELRKEVGMVFQ---QPTPFPFSVYDNVAYG 108
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
K AG+K D ++ + + ++A + + D + D + SGGQ+
Sbjct: 109 LKIAGVK---DKELIDQRVEESLKQAAIWKE----------TKDNL--DRNAQAFSGGQQ 153
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+R+ + + +DE ++ LD ++ +I L + H + V LQ A
Sbjct: 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-- 211
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+ D L +G ++ GP E + F PK++ +D+L
Sbjct: 212 -ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYP 933
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP 73
|
Length = 352 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK ++ + PG + L+GP SGK+T+ L PT G V +G
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVP-------- 544
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q+D+H V VG + + R A G+ PD ++
Sbjct: 545 ----LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDTPDEEI--M 588
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A A + I DT VG E +SGGQK+R+ +V L
Sbjct: 589 AAAKAANAHDFIM-------EFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE ++ LD+ L Q + V+ + T + D I++L G +V
Sbjct: 641 LDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLS-TVERADQILVLKKGSVVEM 694
Query: 407 G 407
G
Sbjct: 695 G 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 51/258 (19%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR ++ DVS + G + LLGP +GKTT + G + P SG + + D+
Sbjct: 15 KKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDIT 69
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E+ +
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKEELDAL- 123
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L+ + D+ +SGG+++RV
Sbjct: 124 --------------------------LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I ++ G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKHLKDRGIG--VLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 8e-04
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS----GEVLVDGEPVTGPGPDR 75
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
GY Q D P++T+ +++ L L +E R
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR 109
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 978
E++ + Y +T E+L F W R ++ T
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT 110
|
Length = 209 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
L D+S + ++T L+GP GK+T L L L P +V G + +G + +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R GV + + + R + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D D + E G+SGGQ++R+ +
Sbjct: 136 ---------------------------WDEVKDRL--HESALGLSGGQQQRLCIARALAV 166
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD T +I
Sbjct: 167 EPEVLLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I +T ++GP GK+T + L L ++ P +K++G + YNG ++ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N + ++ + +A+ R G + + L E+ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKK-LQEIV--EKS-------- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+K +A D D + + +SGGQ++R+ +
Sbjct: 136 ----LKDVAL-----------------WDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214
+DVS + PG + ++G SGKTTLL ++G+L P +GTVTY
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTY 65
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 944 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
GY E+ ++ P +T+ + L + A L+ P+ + + +
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK 110
|
Length = 300 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 9e-04
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 936
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980
R G Q+ + P +++ ++LLF+ L + R+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARR 112
|
Length = 213 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 65/251 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR- 226
L +VS I G + L+G +GKTTLL L G T SG + ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA---FSARCQGVGTRYEMLTEL-----ARREKAAGI 275
A + + MTV E LA F A R + + EL RR + AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
TM SGG+++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + + Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ--LREQGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 913
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 914 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLD-PADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 971 SPEVDSE 977
P D E
Sbjct: 103 -PLADDE 108
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
L +S G +TAL+G SG GK+TL+ +L
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNR 48
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 28/116 (24%)
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGG+++RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ LR+ + G V+ +L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRR-LARERGKTVVMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 942 I 942
I
Sbjct: 74 I 74
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + G++ L+G +GK+TLL L+G P +G++ +G +M F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEM-RFASTTA 75
Query: 228 A-----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A I Q + + EMTV E L L +L + GI
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENL--------------YLGQLPHK---GGI------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V + + E +E L+ LG+D+ DT + +S GQ++ V + + A
Sbjct: 112 VNRRLLNYEARE-------QLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNA 159
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE ++ L + F+++ LR G ++ + E + L D I +
Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAE-----GRVILYVSHRMEEIFALCDAITVFK 214
Query: 400 DGQIV 404
DG+ V
Sbjct: 215 DGRYV 219
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 874 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 934 -------KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
+ + A+ G+ Q+ + P + E++ A LR S
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK 128
|
Length = 228 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+L +VS I G + ++G SGK+TLL L G PT SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ + N V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV--T 457
I+ G P E+ S + P+ V + ++ + +K Y+ T
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKKD------PKYKKLYQKQPRT 304
Query: 458 VQEFAEAFQSFHVG 471
+++ A+A F G
Sbjct: 305 IEQLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGN 926
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
|
Length = 345 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 923
+L GV R G + A++G SG+GK+TL+ ++ G R G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 929
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 930 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESL 962
G K+ F R Q+ S P T+ L
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL 105
|
Length = 252 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 937
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 938 TFARIS-GYCEQN 949
F R GY QN
Sbjct: 72 KFRREKLGYLFQN 84
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR 69
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 57/211 (27%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDE 221
L+IL V V+K G L+G SGK+TLL LAG D + SG V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE------MLTELARREKAAGI 275
R R + VG ++ L L E A +
Sbjct: 80 --EARAK----------------------LRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+ + A A L+ LGL D + +SGG+++RV
Sbjct: 116 RGESSRQSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
G LF DE + LD T +I + L
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L + +KPG + ++GP SGKTTLL + P +GT+ +D
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITID----- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
TA +SQ I ++ Q VG ++ R I P V +
Sbjct: 69 -TARSLSQQKGLIRQLR-----------QHVGFVFQNFNLFPHRTVLENIIEGP---VIV 113
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGPALA 344
K E EA L +GL R +SGGQ++RV + + P +
Sbjct: 114 KGEPKE--EATARARELLAKVGL-----AGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
LF DE ++ LD +++N +RQ + T VI + D+ D I + G+IV
Sbjct: 167 LF-DEPTSALDPELVGEVLNTIRQ-LAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIV 223
Query: 405 YQGP 408
QGP
Sbjct: 224 EQGP 227
|
Length = 250 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S IKPG L+ GP +GK++L ALAG L P SG + + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPW--GSGRIGMPEGEDLLFLPQ 71
Query: 226 R 226
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM----DE 221
LK ++ I ++T L+GP GK+TLL L L +K++G +T +G D+ D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ + Q N M++ E +A+ R QG+ + + + R + A + ++
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW--DEV 135
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+K+ A G+SGGQ++R+ +
Sbjct: 136 KDRLKSHAF--------------------------------GLSGGQQQRLCIARTIAME 163
Query: 342 ALALFMDEISTGLDSSTTFQI---VNCLRQNIHI 372
+ MDE ++ LD T +I + L++N I
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTI 197
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 46/210 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L D++ I R+T L+GP GK+TLL L P +++G + YNG ++ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R G + K
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE------------KNKK-------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMM- 338
+ I + LK L D D + + +SGGQ++R+ +
Sbjct: 121 -------------TLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLA 165
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
V P + L MDE + LD T +I + +
Sbjct: 166 VNPEVIL-MDEPCSALDPIATAKIEDLIED 194
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 7/253 (2%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK++S I+ G + +LG +GK+ L+ L G +D SG + Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++A+ G E + ++ + + + + R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIILLSDGQI 403
DE + LD T + N L + + + + V++ PE DL D I L +G+I
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEI 247
Query: 404 VYQG-PRELVLEF 415
+G P E+V F
Sbjct: 248 KEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 375
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 65/282 (23%), Positives = 96/282 (34%), Gaps = 83/282 (29%)
Query: 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232
G I + +LGP GKTT + LAG L P + D + T +Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------------EGDIEIELDTVSYKP 67
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q+ E TVR+ L S+ + T TE+ KP
Sbjct: 68 QYIKADYEGTVRDLL--SSITKDFYTHPYFKTEI--------AKP--------------- 102
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L ++ D V + +SGG+ +RV + A +DE S
Sbjct: 103 -------------LQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSA 144
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII---LLSDGQIVYQG-P 408
LD +R+ N TA + + DII L+D IV++G P
Sbjct: 145 YLDVEQRLMASKVIRRFAENNEKTAFV-----------VEHDIIMIDYLADRLIVFEGEP 193
Query: 409 RELVLEFFASMGFRCP---KRKGVADFLQE--VTSRKDQRQY 445
+ G P R G+ FL+ +T R+D
Sbjct: 194 --------SVNGVANPPQSLRSGMNRFLKNLDITFRRDPETG 227
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 59/247 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L +++ + G L ++G GKT+L+ A+ G+L P +V G T
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR--SDASVVIRG----------T 680
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+ Q + I TVR+ + F G+ ++ R E+A IDV
Sbjct: 681 VAYVPQV-SWIFNATVRDNILF-------GSPFDP----ERYERA--------IDV---- 716
Query: 288 IATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALA 344
T Q L +L G D+ T +G+ RG ISGGQK+RV+ + +
Sbjct: 717 --TALQHD-------LDLLPGGDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDV 761
Query: 345 LFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
D+ + LD+ Q+ + C++ + + V + L + D IIL+ +G I
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV----DRIILVHEGMI 817
Query: 404 VYQGPRE 410
+G E
Sbjct: 818 KEEGTYE 824
|
Length = 1622 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.003
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 324 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 940
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
R QN P + + +++ F + P+ D R
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS----GEVLLDGRPVTG 69
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLF 964
GY Q D P++T+ +++
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVAL 95
|
Length = 248 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 318 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 40/254 (15%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
R PS + + +LK +S I G + ++G SGK+TL+ L G LD PT SGT
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPT---SGTYRV 67
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
G D+ A +H I + RY +L+ L +
Sbjct: 68 AGQDVATLDADALAQLRREHFGFIFQ------------------RYHLLSHLTAAQNV-- 107
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
++ + + + L+ LGL+ + +SGGQ++RV+
Sbjct: 108 -----EVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSI 155
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
++ + DE + LDS + +++ L Q + G VI ++ P+ +
Sbjct: 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQ--LRDRGHTVI-IVTHDPQVAAQAER 212
Query: 395 IILLSDGQIVYQGP 408
+I + DG+IV P
Sbjct: 213 VIEIRDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202
V G++ G LTLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213
L DV+ I G ++G SGK+TLL L G L PT SGTVT
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVT 65
|
Length = 290 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
DVS + PG + ++G SGKTTLL AL+ +L P +G V Y D
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD 69
|
Length = 258 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 67/261 (25%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K +H T+L +VS +K G LLG GK+TL L G P+ G V++ G +
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLA 77
Query: 221 EF------VPQRTAAYISQHDNHIGEM----TVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + I + TVRE + R L L + E
Sbjct: 78 KLNRAQRKAFRRDIQMVFQ--DSISAVNPRKTVREIIREPLR---------HLLSLDKAE 126
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L+ + LD V D+ +SGGQ +
Sbjct: 127 RLAR------------------------ASEMLRAVDLDD----SVLDKRPPQLSGGQLQ 158
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + V P L L +DE + LD ++ L++ + GTA + + T+
Sbjct: 159 RVCLARALAVEPKL-LILDEAVSNLDLVLQAGVIRLLKK-LQQQFGTACLFI------TH 210
Query: 390 DL-----F-DDIILLSDGQIV 404
DL F ++++ +GQIV
Sbjct: 211 DLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 939 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLR 969
R GY + P +T+ E+LL A+ R
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYAR 103
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLR 969
G QN+ P++ + +++ F LR
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR 102
|
Length = 259 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
|
Length = 248 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 42/209 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----M 219
ILK+V+ I +T L+GP GK+T + L L P + G + +G D +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
D ++ + Q N + ++ + +A+ R G + D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--------------------EDDE 116
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D +++ E +A + D L D+ G+SGGQ++R+ +
Sbjct: 117 D---FIEERVEESLKAAALWDEVKDKL-----------DKSALGLSGGQQQRLCIARTIA 162
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ MDE + LD +T +I + + +
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLIHK 191
|
Length = 250 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 991 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.98 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.98 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.98 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.98 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.94 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.93 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.92 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.91 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.91 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.91 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.9 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.88 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.88 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.86 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.86 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.86 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.83 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.83 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.82 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.82 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.82 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.81 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.78 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.77 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.77 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.76 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.76 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.75 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.73 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.72 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.72 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.72 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.71 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.7 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.68 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.67 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.67 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.67 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.65 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.63 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.63 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.62 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.62 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.62 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.61 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.61 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.61 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.59 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.59 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.59 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.59 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.58 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.58 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.57 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.57 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.57 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.56 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.56 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.56 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.56 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.55 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.55 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.55 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.55 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.55 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.55 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.55 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.55 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.55 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.54 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.54 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.54 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.54 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.54 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.54 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.54 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.54 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.54 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.53 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.53 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.53 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.53 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.53 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.53 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.53 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.52 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.52 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.52 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.52 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.52 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.52 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.52 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.52 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.52 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.52 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.51 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.51 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.51 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.51 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.51 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.51 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.51 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.51 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.5 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.5 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.5 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.5 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.5 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.5 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.5 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.5 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.5 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.5 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.5 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.5 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.5 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.5 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.49 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.49 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.49 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.49 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.49 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.49 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.49 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.49 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.48 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-184 Score=1658.31 Aligned_cols=877 Identities=52% Similarity=0.897 Sum_probs=811.8
Q ss_pred CCcHHHhHHHHHhhCCchhhhhhcccccC-CCCcccccccCCCHHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC
Q 001957 36 EDDEEALKWAALEKLPTYNRLRKGILTTS-RGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL 114 (991)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (991)
+||||++||||+|||||++| +++.+. ++ ++|+.+++..++..+.++..+..++|+++++.++++|.+++ +.
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 44999999999999999998 555432 22 79999999999999999999999999999999999999998 88
Q ss_pred CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 001957 115 PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTL 194 (991)
Q Consensus 115 p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTL 194 (991)
|.++++++++.+++++..| ||++|...+.++.++...+.. ++.+.+||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999887766554 4556789999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcC
Q 001957 195 LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (991)
Q Consensus 195 L~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (991)
|++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ ++.|+++.+
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999988777789999999999999889999999999999999999999999999999988865 455555431
Q ss_pred CCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCC
Q 001957 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (991)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGL 354 (991)
.++|++++++||++|+||+|||++.||+||||||||+||++++++++++||||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 355 D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
|++|+++|+++||+++|..+.|.+++++||+++++++||+|++|++|++||+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCccCcccccccccccccCCcHHHHHHHHHHHHHH
Q 001957 435 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514 (991)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l 514 (991)
++++.+++.|||..++.|+.+.++.||.+.|.+++.++++..+++.++++.+.|+.++..++|.+++|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHHHHHHhhcchhhhhhhccCc
Q 001957 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRF 594 (991)
Q Consensus 515 ~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~ 594 (991)
+++||++++++++++.+++|+|+|++|+++++ ++..++..+.|++||++++.+|++++|++++++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 5667788899999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 001957 595 FPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 674 (991)
Q Consensus 595 Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~ 674 (991)
|+||||.+|.+++++|+.++++++|.+|+||++||.+++++||+|+|+++++++|++++|++++++++++.+|+++|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccCCC---------------Ccchhhhhhcc
Q 001957 675 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---------------SETLGVQVLKS 739 (991)
Q Consensus 675 ~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~~~---------------~~~~G~~~L~~ 739 (991)
++++.+++||+||+++||+||+|++|+||++|+++++++|||++.+|.|.|.++ ..+.|.++|+.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999973221 25678999999
Q ss_pred cCcc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCC
Q 001957 740 RGFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNT 814 (991)
Q Consensus 740 ~~~~-----~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (991)
++|. ...+|+|+|+|+++||.++|++++.+++.|++|..+++++++.++..++.......
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~--------------- 754 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG--------------- 754 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc---------------
Confidence 9888 77789999999999999999999999999999999999887755443321110000
Q ss_pred CCCCCCccccccCccchhhhhhhhcCCCCCCCCccCCCCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCC
Q 001957 815 RSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPG 894 (991)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG 894 (991)
. .+. ... ... ....+++++++|++|..++++||.|.+++|-+++.|| +++|||+||||+||||
T Consensus 755 -~-~~~----------~~~-~~~-s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG 817 (1391)
T KOG0065|consen 755 -S-SSE----------IEK-LDD-SSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPG 817 (1391)
T ss_pred -c-ccc----------ccc-ccc-ccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCC
Confidence 0 000 000 000 0111356889999999999999999999999999998 7899999999999999
Q ss_pred eEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v 974 (991)
+||||||+|||||||||||||||||+|+|+|||+|||+|++|++|+|++|||||+|+|+|++||||||+|||+||||++|
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccccce
Q 001957 975 DSETRKVGTKSP 986 (991)
Q Consensus 975 ~~~~k~~~veev 986 (991)
+.+||++|||||
T Consensus 898 ~~~ek~~yVe~V 909 (1391)
T KOG0065|consen 898 SDEEKYEYVEEV 909 (1391)
T ss_pred CHHHHHHHHHHH
Confidence 999999999998
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-166 Score=1596.55 Aligned_cols=965 Identities=59% Similarity=0.986 Sum_probs=838.4
Q ss_pred ccccccCCCCcccCC-------CCCCCcHHHhHHHHHhhCCchhhhhhcccccC-----CCC---cccccccCCCHHhHH
Q 001957 18 ASRWNTNSIGAFSRS-------SREEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQ 82 (991)
Q Consensus 18 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~l~~~~~~ 82 (991)
.++|.. +|+|++. +..|||||+|+|||+||||||+|+|++++... .|+ ..|+|+++||.++++
T Consensus 18 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1470)
T PLN03140 18 RSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQ 95 (1470)
T ss_pred hhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHH
Confidence 345743 6888542 13678999999999999999999999999653 122 236999999999999
Q ss_pred HHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCcc
Q 001957 83 RLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKK 162 (991)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 162 (991)
.+++++++++++|++++++++++|.+++|+++|+++|+|+||+|++++.++++.+||++|.+.+.++.+...++...+++
T Consensus 96 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~ 175 (1470)
T PLN03140 96 KFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK 175 (1470)
T ss_pred HHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999989999999999999999888776555444445
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
.+++||+||||.|+|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 56889999999999999999999999999999999999998877889999999999987666788999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|||.|+++|++++.+++++.++.++++++++.|+.+++.+|++.+.++.+.+..++++|+.+||++|+||.||+++++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 99999999999887666555556667777777788888899999988888888888999999999999999999999999
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||++|+++|++|||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999999999999876688999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCc
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (991)
++|+||++++++||+++||+||+++|+|||++++++++++++||.....|+++.++++|+++|++++.++++.+++..+.
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 495 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPF 495 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999998888999877778777899999999999998888877777777
Q ss_pred cCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHH
Q 001957 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562 (991)
Q Consensus 483 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lf 562 (991)
+++..++.....++|..++++|+++|++|++++++||++++++|+++.+++|+++|++||+++++..+..+++.+.|++|
T Consensus 496 ~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lf 575 (1470)
T PLN03140 496 DKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALL 575 (1470)
T ss_pred hhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Confidence 66665666566677999999999999999999999999999999999999999999999999877655566778899999
Q ss_pred HHHHHHHHhHHHHHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHH
Q 001957 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL 642 (991)
Q Consensus 563 f~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~ 642 (991)
|++++.+|+++++++.++.+||||+|||+++||++|+|++|++++++|+.++++++|++|+|||+||++++++||+|+++
T Consensus 576 f~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~ 655 (1470)
T PLN03140 576 FSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccc
Q 001957 643 LLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722 (991)
Q Consensus 643 ~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~ 722 (991)
+++++++++++|++++++++++.+|+++++++++++++|+||+|++++||+||+|++|+||++||++|+++|||.+.+|.
T Consensus 656 ~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~ 735 (1470)
T PLN03140 656 VFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWM 735 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cc-cCCCCcchhhhhhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001957 723 KF-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (991)
Q Consensus 723 ~~-~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (991)
+. +.+...+.|.++|+.+|++..++|+|+++++|++|+++|+++++++|+|+++....+.++.++..++........+-
T Consensus 736 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1470)
T PLN03140 736 NKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPR 815 (1470)
T ss_pred CcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccc
Confidence 43 22334678999999999998889999999999999999999999999999987776665432211110000000000
Q ss_pred cccccCCCCCCCCCCCCCCccccccCccchhhhhhhhcCCCCCCCCccCCCCcceeecceEEEeeCchhhhhccccccce
Q 001957 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (991)
Q Consensus 802 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~ 881 (991)
.................|..... .+...... .+.......++++.+|+.|.+++|+||+|+|++|++++.+|...+++
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~ 893 (1470)
T PLN03140 816 SLSSADGNNTREVAIQRMSNPEG-LSKNRDSS-LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893 (1470)
T ss_pred ccccccccccccccccccccccc-cccccccc-cccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCc
Confidence 00000000000000000000000 00000000 00001122346788999999999999999999999888777777788
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
++|+||||.++||+++|||||||||||||||+||||+++|.++|+|.+||++.++..++|.+|||+|+|.|.|++||+|+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998767889999999999999999999999
Q ss_pred HHhhhhccCCCCCCHHHHhccccce
Q 001957 962 LLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 962 L~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|.|+|++|+|++++.++|.++|||+
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~v 998 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEV 998 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999999999999988888888775
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-125 Score=1224.08 Aligned_cols=830 Identities=30% Similarity=0.486 Sum_probs=661.7
Q ss_pred cChHHHHHHHHHhhhhcCCCC--CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeece
Q 001957 94 VDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (991)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (991)
.|.+++++.+.++.++.+... ++++|+|+||+|++ ...+...+||+.|.+.+.+..+...+. .++++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 456666665545445554444 49999999999999 445666789999998887664443221 12334557899999
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.|||+++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 14999999999875432 2456999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
|+++++.+..+.. ...+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988764321100 000000 01123467899999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||+||++|+.+|++|||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCccCc---
Q 001957 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (991)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 485 (991)
++++.+||+++||+||++.|+|||+++++++++ ++++...+. ....+.+++.++|+++..++++.+++..+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999998754 333322111 123568899999998877665554443221110
Q ss_pred ---------c---cccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 001957 486 ---------K---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (991)
Q Consensus 486 ---------~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~ 553 (991)
. ..+.....++|..|+|+|+++|++|++++++||+..++.|+++.+++|+++|++||+++.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0 000112234688999999999999999999999999999999999999999999999986543 4
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccch
Q 001957 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (991)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~ 633 (991)
.+.+.|++||++++.+|+++++++.++.+||||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHh
Q 001957 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (991)
Q Consensus 634 ~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~ 713 (991)
++||.|+++++++++++++++++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++|+++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccccc---cCC---------------------CCcchhhhhhcc-cCcccccchhhHHHHHHHHHHHHHHHHHH
Q 001957 714 NEFLGHSWKKF---TQD---------------------SSETLGVQVLKS-RGFFAHEYWYWLGLGALFGFVLLLNFAYT 768 (991)
Q Consensus 714 nef~~~~~~~~---~~~---------------------~~~~~G~~~L~~-~~~~~~~~~~w~~~g~l~~~~~~f~~~~~ 768 (991)
|||.+..+.|. +.+ .+.+.|.++|+. +++. ..|+|++++++++|+++|+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHH
Confidence 99999988874 110 124578899984 5554 45899999999999999999999
Q ss_pred HHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCC-CCCCCCCCccccccCccchhhhhhhhcCCCCCCCC
Q 001957 769 LALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNH-NTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGM 847 (991)
Q Consensus 769 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (991)
++++|+++......+++.+............. ....... +.....+. ... . .+ .... ....
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~~~~~~~--------~~~-~-~~-~~~~--~~~~ 749 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGET-----SASNKNDIEAGEVLGS--------TDL-T-DE-SDDV--NDEK 749 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccc-----cccccccccccccCCC--------Ccc-c-cc-cccc--cccc
Confidence 99999987665544433221110000000000 0000000 00000000 000 0 00 0000 0000
Q ss_pred ccC--CCCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-e
Q 001957 848 VLP--FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-T 924 (991)
Q Consensus 848 ~lp--~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~ 924 (991)
..| .....++|+||+|.++.++ +++++|+|||+.++||+++||||+||||||||||+||||.+.|.. +
T Consensus 750 ~~~~~~~~~~l~~~nl~~~~~~~~---------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~ 820 (1394)
T TIGR00956 750 DMEKESGEDIFHWRNLTYEVKIKK---------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820 (1394)
T ss_pred cccccCCCceEEEEeeEEEecCCC---------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcce
Confidence 001 1123579999999986432 246899999999999999999999999999999999999987754 5
Q ss_pred EEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 925 GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 925 G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|+|++||++.. ..++|.+|||+|+|.|.|.+||||+|.|+|.||+|.+++++++...|+|+
T Consensus 821 G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 821 GDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEV 881 (1394)
T ss_pred eEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999975 46899999999999999999999999999999999989888887777764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-92 Score=850.16 Aligned_cols=584 Identities=30% Similarity=0.511 Sum_probs=495.5
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
...+++.|+|+++++... .+ ..++||+||||.++|||++||||||||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346889999999987431 11 3567999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
||++|+|+.....+++|+|++||++.+....++.+|||.|+|.++|++||+|+|.|+|+++.+.. +.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCH-----
Confidence 99999999987667899999999887776678999999999999999999999999999986532 111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
++.+.++|++++.|||.+|+||++|+...|||||||||||+||..|+.+|+||||||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1234578999999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
||+.++.++++.|+++|+. |+|||++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhccCCCccccCHHHHHHHHHh-ccccccchhhhcCCccCcccccccccccccCCcHHHHHHHHHHHH
Q 001957 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQS-FHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRE 512 (991)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~ 512 (991)
.++.+..++.+.-... .........++. ....+... .......... ........++|.|+..+++|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTSK-----KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhccccc-----ccccccCCcHHHHHHHHHHHH
Confidence 9998743110000000 000011111110 00000000 0000000000 000011678999999999999
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhc
Q 001957 513 LLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRD 591 (991)
Q Consensus 513 ~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~ 591 (991)
++.++|++.++..|++|.+++++++|++||+.+.+...+ ..+.|++||.+.+..|..+. .++.+..++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999997655443 35689999988888776665 57788899999999999
Q ss_pred cCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 001957 592 FRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671 (991)
Q Consensus 592 ~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~ 671 (991)
+++|+.++|++|+.+.++|+.++.+++|.+|+|||+|++++..+|+.|++++++..+++.+++.+++++.++...|++++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccC--CCCcchhhhhhcccCcccccchh
Q 001957 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWY 749 (991)
Q Consensus 672 ~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~ 749 (991)
+++++.+++|+||+++.++||+||+|+.|+|+++|++|+++.|||.+....|... ..+...|.++++..++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999999744444433 3457789999999998654 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 750 WLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 750 w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
|.++.++.++.++|+++++++|++..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-91 Score=847.41 Aligned_cols=609 Identities=20% Similarity=0.325 Sum_probs=474.2
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
.+.++++|.|+++.+.......+... +.+.+..-....++.. +.+.+++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETR-QIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccc-cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35799999999998743210111100 1111100000001111 223467999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+... .+.
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~~~---- 176 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------TKQ---- 176 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------CHH----
Confidence 999999998764 3589999999987542 245689999999999999999999998765422100 000
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+....++++++.+||++++||.+|++..++|||||||||+||++|+.+|++|||||||+|
T Consensus 177 --------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 177 --------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred --------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 112346778999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
||+.++.++++.|+++++ .++|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999986 5899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCC-ccC--cc-----cccc-cccccccCCcHHHH
Q 001957 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP-FDK--SK-----SHRA-ALTTETYGVGKREL 504 (991)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~-----~~~~-~~~~~~~~~s~~~~ 504 (991)
+++++...+.+.....+.+ ...+++.+.|++... ++..+..... ... .. .... ......+..++|+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 112333444432111 1110000000 000 00 0000 00112245689999
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHH-hHHHHHHHHhhcc
Q 001957 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (991)
Q Consensus 505 ~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~~ 583 (991)
+.++++|+++. +|++.+...|+++.+++|+++|++||+++ . .+.+.+.|++||++++.++ ..+..++.+..+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 78888888999999999999999999874 2 2345678999999887654 5567778888999
Q ss_pred hhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001957 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (991)
Q Consensus 584 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~ 663 (991)
+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++++||.|++++++++++++++++++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCc-----cccccCCCCcchhhhhhc
Q 001957 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS-----WKKFTQDSSETLGVQVLK 738 (991)
Q Consensus 664 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~-----~~~~~~~~~~~~G~~~L~ 738 (991)
+.+|+++++++++++++|+||+++ +||+||+|++|+||++|+++|++.|||.+.+ +.|.........+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999998754 234321110111122333
Q ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
...+. ....|.++++|++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33332 235799999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-91 Score=850.42 Aligned_cols=569 Identities=25% Similarity=0.419 Sum_probs=483.3
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.++.||+|||+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875556899999999986544567899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc-
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (991)
||+|||.|+++++.+... .+. +....++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKK------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999987643210 000 112357889999999999999999864
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 5899999999999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcC
Q 001957 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (991)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (991)
|+++|+|+++++.+||+++||+||++.|||||+.++++.....+ .. ...+.+++.+.|+++...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999987532110 00 012234556666655444333222211
Q ss_pred CccCcc---cccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccch
Q 001957 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (991)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~ 557 (991)
...... .........+|..+++.|+..+++|.++..+||+..+..++++.+++|+++|++||+.+.+.. +.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 100000 000011223567889999999999999999999999999999999999999999999876543 34556
Q ss_pred hhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHH
Q 001957 558 AGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (991)
Q Consensus 558 ~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~f 636 (991)
.|++||++++.+|.++. .++.+..+|++|+|||.+++|++++|+++++++++|+.++.+++|++|+|||+|+++++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 89999999888887654 45566689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhh
Q 001957 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (991)
Q Consensus 637 f~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef 716 (991)
|.|+++++++.+++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|+++|+++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CCcchhhhhhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001957 717 LGHSW-KKFTQD---SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (991)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (991)
.+..+ .|...+ .+...|.++|+.+|+... ++|.+++++++|+++|+++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99776 443211 134568999999998654 469999999999999999999999875
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-89 Score=885.62 Aligned_cols=594 Identities=22% Similarity=0.381 Sum_probs=498.7
Q ss_pred CCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcH
Q 001957 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (991)
Q Consensus 112 ~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGK 191 (991)
++...+.+.|+||++.++...+.+ + ....+..++||+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~--------------------~-~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMK--------------------E-QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCcccc--------------------c-cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 355567899999999985421100 0 0111234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHH
Q 001957 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (991)
Q Consensus 192 STLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (991)
||||++|+|+.++ +.++|+|.+||++.+....++.++||+|+|.|++.+||+|||.|++.++.+... .+
T Consensus 920 TTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~~--- 988 (1470)
T PLN03140 920 TTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------SK--- 988 (1470)
T ss_pred HHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------CH---
Confidence 9999999999764 245899999999876444457799999999999999999999999876422110 00
Q ss_pred HcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCC
Q 001957 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (991)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPT 351 (991)
++....++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||
T Consensus 989 ---------------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 989 ---------------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 01123467899999999999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-CeEEEecCH----HHHHHHHHhc-CC-CCC
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFASM-GF-RCP 424 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~p 424 (991)
+|||+.++..+++.|+++++ .++|+|+++|||..+++++||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 99999999999999999976 5889999999999889999999999996 899999996 6899999997 66 499
Q ss_pred CCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhh---cCCccCcccccccccccccCCcH
Q 001957 425 KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL---RTPFDKSKSHRAALTTETYGVGK 501 (991)
Q Consensus 425 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~s~ 501 (991)
+..|||||++++++..... ....++.+.|+.+...++..+.+ ..+....+ ......+|..++
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~ 1191 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS---DLYFATQYSQST 1191 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCcc---ccccCccccCCH
Confidence 9999999999998643211 01235777777766554433222 22111111 111234688999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHH-HHHHh
Q 001957 502 RELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSE-ISMTI 580 (991)
Q Consensus 502 ~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~-~~~~~ 580 (991)
|+|+++|++|+++.+|||+.++..|+++.+++|+++|++||+++.+..++++.+...|++|+++++..++...+ ++.+.
T Consensus 1192 ~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~ 1271 (1470)
T PLN03140 1192 WGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776666676677899999988877765544 45666
Q ss_pred hcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001957 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660 (991)
Q Consensus 581 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~ 660 (991)
.+|+||+|||.+++|++++|++|++++++|+.++.+++|.+|+|||+||.++++.||.|+++++++.+++.+++++++++
T Consensus 1272 ~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~ 1351 (1470)
T PLN03140 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSL 1351 (1470)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccCCC-Ccchhhhh-hc
Q 001957 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQV-LK 738 (991)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~~~-~~~~G~~~-L~ 738 (991)
+|+..+|+.+++++++++++|+||++|+++||+||+|+||+||++|+++++++|||.+....|.+++. +...+.++ ++
T Consensus 1352 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1431 (1470)
T PLN03140 1352 TPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQD 1431 (1470)
T ss_pred CCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776654431 12345555 67
Q ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001957 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDP 776 (991)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~ 776 (991)
.+||.. .|.|.+++++++|+++|.+++++++++++.
T Consensus 1432 ~~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1432 HYGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred hcCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 788864 478999999999999999999999999975
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-86 Score=801.21 Aligned_cols=561 Identities=24% Similarity=0.364 Sum_probs=471.0
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.+++++|+||||.++||.+|||||+|||||||||++||||... +.++|+|++||++.++...+|.+|||.|+|.|.+++
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 3567899999999999999999999999999999999999754 578999999999998767789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||||.|.|+|.+|.+.. +.. ++....+|++++.++|++++|.+||+..
T Consensus 880 TVrESL~fSA~LRlp~~-------v~~------------------------~ek~~yVe~Vi~lleL~~~~daiVG~~G- 927 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKE-------VSD------------------------EEKYEYVEEVIELLELKEYADALVGLPG- 927 (1391)
T ss_pred chHHHHHHHHHHcCCCc-------CCH------------------------HHHHHHHHHHHHHhCchhhhhhhccCCC-
Confidence 99999999999875421 111 1233578999999999999999999887
Q ss_pred CCCChhHhHHHHHHHHHhcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-
Q 001957 322 RGISGGQKKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS- 399 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p-~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~- 399 (991)
.|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|+||||+..+++.||++++|+
T Consensus 928 ~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhc
Confidence 999999999999999999999 99999999999999999999999999998 799999999999999999999999997
Q ss_pred CCeEEEecCH----HHHHHHHHhcC-CCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccc
Q 001957 400 DGQIVYQGPR----ELVLEFFASMG-FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 474 (991)
Q Consensus 400 ~G~iv~~G~~----~~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (991)
.|++||.||. +.+++||++.| .+||+..|||||++|+++...+.. ...++++.|+++..+++.
T Consensus 1007 GGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~ 1074 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRN 1074 (1391)
T ss_pred CCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHH
Confidence 5899999987 45778999987 899999999999999987532221 113788999988877766
Q ss_pred hhh---hcCCccCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 001957 475 SDE---LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (991)
Q Consensus 475 ~~~---l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~ 551 (991)
.++ ++.+... .........+|+.|.|.|++.|++|+++..||++.+...|++..++.|+++|+.||+++. ++
T Consensus 1075 ~e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~ 1149 (1391)
T KOG0065|consen 1075 KELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NV 1149 (1391)
T ss_pred HHHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cH
Confidence 544 3333333 112223445689999999999999999999999999999999999999999999999984 45
Q ss_pred ccccchhhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCc
Q 001957 552 TDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630 (991)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~ 630 (991)
++.+..+|++|.++++...+... ..+..-.++.+|||||..++|+..+|++|++++|+|+.++.+.+|.+++||++||.
T Consensus 1150 q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~ 1229 (1391)
T KOG0065|consen 1150 QGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFY 1229 (1391)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccch
Confidence 56667789999887765443333 33334468899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHH
Q 001957 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNA 710 (991)
Q Consensus 631 ~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~a 710 (991)
.++.+|+.|++..+++.+....++.++.+++||..+|..+.++++.++.+|+||++|++.||.||+|+||+||+.|-.++
T Consensus 1230 ~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~g 1309 (1391)
T KOG0065|consen 1230 WTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEG 1309 (1391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccccCC-------CCcchhhhhhcccC----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 711 IVANEFLGHSWKKFTQD-------SSETLGVQVLKSRG----FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 711 l~~nef~~~~~~~~~~~-------~~~~~G~~~L~~~~----~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
++...+++..-.|...+ +..+.|+.+-..+| +..+..- ....+..+|.+.+.+++.+.++|.+
T Consensus 1310 li~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1310 LISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 99999998766664322 12345544444444 3322110 1111233355566666666666654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-83 Score=832.22 Aligned_cols=559 Identities=24% Similarity=0.354 Sum_probs=462.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.||+|||+.++||++++|+|||||||||||++|+|+.++....+|+|++||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3569999999999999999999999999999999999987321127999999999853 346789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|||.|+++++.+... .+ ++....++++++.+||.+++|+.||+.. .+
T Consensus 854 ~E~L~~~a~l~~~~~~-------~~------------------------~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-------SK------------------------SEKMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-------CH------------------------HHHHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 9999999876532110 00 0112346789999999999999998643 48
Q ss_pred CChhHhHHHHHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC-
Q 001957 324 ISGGQKKRVTTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG- 401 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~-vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G- 401 (991)
|||||||||+||++|+.+|+ +|||||||+|||+.++..|++.|+++++ .+.|+|+++|||...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999976 58899999999998888999999999987
Q ss_pred eEEEecCH----HHHHHHHHhcCC-CCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchh
Q 001957 402 QIVYQGPR----ELVLEFFASMGF-RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISD 476 (991)
Q Consensus 402 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (991)
+++|+|++ +++.+||++.|+ +||++.|||||++|+.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999976422110 01234445554433322221
Q ss_pred hh---cCCccCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 001957 477 EL---RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (991)
Q Consensus 477 ~l---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~ 553 (991)
++ ..+.............++|..+++.|++.+++|.++..+||+.+.+.|+++.+++|+++|++||+++.+. .+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HH
Confidence 11 1110000000000112468889999999999999999999999999999999999999999999997653 34
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHhhcchh-hhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccc
Q 001957 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPV-FYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSN 632 (991)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~v-f~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~ 632 (991)
.+.++|++|+.+++..+.....++.++.++++ |+|||.+++|++++|++|++++++|+.++.+++|.+|+|||+||.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 55678999988776655544556666777776 49999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHH
Q 001957 633 AGR-------FFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLT 705 (991)
Q Consensus 633 ~~~-------ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~ 705 (991)
+.. ||.|+++++++.+++.+++.++++++++..+|+.+++++++++++|+||++++++||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCccccccC-------------------------------CC---C----cchhhhhhcccCcccccc
Q 001957 706 YAQNAIVANEFLGHSWKKFTQ-------------------------------DS---S----ETLGVQVLKSRGFFAHEY 747 (991)
Q Consensus 706 Y~~~al~~nef~~~~~~~~~~-------------------------------~~---~----~~~G~~~L~~~~~~~~~~ 747 (991)
|++++++.|||.+....|... +. | ...|.++|+.+++...
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~-- 1363 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYS-- 1363 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccc--
Confidence 999999999999987655321 00 1 3578999999888654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001957 748 WYWLGLGALFGFVLLLNFAYTLALTFL 774 (991)
Q Consensus 748 ~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (991)
.+|++++++++|++++ ++.++++.|.
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheE
Confidence 3699999999998877 7677777775
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=561.17 Aligned_cols=258 Identities=25% Similarity=0.350 Sum_probs=201.5
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhh-hhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
..++..+.++.++++..+. +...- ..--+.-...+++|+|+++++.
T Consensus 315 ~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP---------------------------- 361 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP---------------------------- 361 (1228)
T ss_pred hccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC----------------------------
Confidence 4566667777777776554 11111 0111223468899999999873
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
+|+ ...||+|+|+.|++|+.+||+|||||||||++++|.++++|+ +|+|++||.++.+++. +..+|.|+|+
T Consensus 362 --sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 362 --SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred --CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 232 467999999999999999999999999999999999999999 9999999999988764 4689999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+ .++..||+||+.|+.. ....+...+ .. ...+..-.+..|++.+||
T Consensus 436 P-vlF~~tI~eNI~~G~~----dat~~~i~~---a~--------------------------k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 436 P-VLFATTIRENIRYGKP----DATREEIEE---AA--------------------------KAANAHDFILKLPDGYDT 481 (1228)
T ss_pred h-hhhcccHHHHHhcCCC----cccHHHHHH---HH--------------------------HHccHHHHHHhhHHhhcc
Confidence 8 5678899999999741 111111111 11 112223456678999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||++.+ +||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. .|+|+|+..| . -++.+.+|+
T Consensus 482 ~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaH-R-LStIrnaD~ 556 (1228)
T KOG0055|consen 482 LVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAH-R-LSTIRNADK 556 (1228)
T ss_pred cccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEee-e-hhhhhccCE
Confidence 9998766 499999999999999999999999999999999999999999999865 3566666544 3 355666999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+||+.|.|+|++.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=545.11 Aligned_cols=208 Identities=26% Similarity=0.364 Sum_probs=179.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 46999999999999999999999999999999999999998 999999999985321 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|+|.|.++.++.... +.+..++++|+.+||++..|..+ +
T Consensus 1020 V~E~L~f~~~lkg~~~~----------------------------------~~~~~v~~lL~~vgL~~~~~~~~-----~ 1060 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSWE----------------------------------EAQLEMEAMLEDTGLHHKRNEEA-----Q 1060 (2272)
T ss_pred HHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 99999998776543110 01123567899999988777554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+++|++|+|||||+|||+.++..+++.|+++. .++|+|++ +|..+++..++|+|++|++|+
T Consensus 1061 ~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIlt-THdmdea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMS-THHMDEADLLGDRIAIISQGR 1137 (2272)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEE-ECCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999983 35665555 567889999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
++..|+++++.+.|.
T Consensus 1138 L~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEecCHHHHHHhcC
Confidence 999999999987764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=498.61 Aligned_cols=278 Identities=17% Similarity=0.275 Sum_probs=183.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCC-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
+.+...++|+.++++.+++ +.+ ..-+.+.+ ..+++|+||++.+..
T Consensus 349 ~~a~~a~~ri~~ii~~~~~-----~~~--~~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 394 (1466)
T PTZ00265 349 MKSLEATNSLYEIINRKPL-----VEN--NDDGKKLKDIKKIQFKNVRFHYDT--------------------------- 394 (1466)
T ss_pred HHHHHHHHHHHHHHcCCCC-----CCC--CCCCccCCCCCcEEEEEEEEEcCC---------------------------
Confidence 4566667777777766543 111 01112222 137999999988631
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CeeCCCccc---cceEEEEec
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN-GHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~~~~~~~---~~~~~yv~Q 233 (991)
+ ..+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|++| |+++.+... ++.++||+|
T Consensus 395 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q 467 (1466)
T PTZ00265 395 ---R-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQ 467 (1466)
T ss_pred ---C-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecc
Confidence 1 1235999999999999999999999999999999999999998 9999994 688765442 467999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc-CC---------Cc--hhhhhH-HHHHHHH----HcCCCCCCChHHHHHHHHhhhhhhh
Q 001957 234 HDNHIGEMTVRETLAFSARCQ-GV---------GT--RYEMLT-ELARREK----AAGIKPDPDIDVYMKAIATEGQEAN 296 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~-~~---------~~--~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (991)
++.+|+ .||+|||.++.... +. .. ..+... .-..+++ ...+....+.+..++..........
T Consensus 468 ~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 468 DPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred cccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 887775 69999999974210 00 00 000000 0000000 0000000000000000000000001
Q ss_pred HHHHHHHHHc-------CCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 297 VITDYYLKVL-------GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 297 ~~~~~~l~~l-------gL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
..+.++++.+ .|++.+||.||.. ...||||||||++|||||+.+|+||+|||||++||+.++..|.+.|+++
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 1223333333 5677889999854 6789999999999999999999999999999999999999999999997
Q ss_pred hhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 370 ~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+..++|+|++.|+ .+ ..+.||+|++|++|
T Consensus 626 ~~~~g~TvIiIsHr-ls-~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 626 KGNENRITIIIAHR-LS-TIRYANTIFVLSNR 655 (1466)
T ss_pred hhcCCCEEEEEeCC-HH-HHHhCCEEEEEeCC
Confidence 64346677666554 43 45799999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=378.37 Aligned_cols=222 Identities=26% Similarity=0.415 Sum_probs=189.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----cccceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~ 238 (991)
+..++|+|||++|++||+++|+|||||||||||+||.|+..++ +|+|.++|.++... ..++.+|+|+|+.++|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3467999999999999999999999999999999999999999 99999999876421 2357899999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 239 GEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
|++||.||+.++... ++.. ..+++....++|+.+||.+.+|
T Consensus 90 PHlTvleNv~lap~~v~~~~----------------------------------k~eA~~~A~~lL~~VGL~~ka~---- 131 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKLS----------------------------------KAEAREKALELLEKVGLADKAD---- 131 (240)
T ss_pred ccchHHHHHHhhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCchhhhh----
Confidence 999999999998532 2111 1112334566899999999887
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.++.+|||||||||+|||||+.+|+++++|||||+|||....++++.++++++ .|.|.|| ++|.+..+.+.+|||++
T Consensus 132 -~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMiv-VTHEM~FAr~VadrviF 208 (240)
T COG1126 132 -AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMII-VTHEMGFAREVADRVIF 208 (240)
T ss_pred -hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEE-EechhHHHHHhhheEEE
Confidence 56789999999999999999999999999999999999999999999999987 4655555 56789999999999999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
|++|+++..|+++++ |..|.+.-..+|+..+
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 999999999999876 4567777677777543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=413.95 Aligned_cols=213 Identities=30% Similarity=0.381 Sum_probs=182.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCeeCCCccc-------cceEEEEecCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (991)
..+++||||++.+||+++|+|.|||||||+.++|.|++++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4468999999997754432 26799999985
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+-|.+||.+.+.-..+.++...+ .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 456779999999887776643211 1122345678999999987654
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
++++++|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.++ .++.++.|+|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6799999999999999999999999999999999999999999999999999875 456666678899999999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||++|++|+.|++++++.
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=459.29 Aligned_cols=246 Identities=21% Similarity=0.273 Sum_probs=181.1
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
.+....++|+.+.++.+++. .++ ..........++|+|+++.++..
T Consensus 582 ~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~~--------------------------- 627 (1495)
T PLN03232 582 VNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDSK--------------------------- 627 (1495)
T ss_pred HHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCCC---------------------------
Confidence 45666777777776554320 000 00011112368999999886420
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI 238 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (991)
.++.+|+|+|++|++|+.++|+||+|||||||+++|.|.++|. +|.+. ..++.++||+|++.++
T Consensus 628 ----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~---------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 628 ----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV---------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred ----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE---------EecCcEEEEcCccccc
Confidence 1235899999999999999999999999999999999999997 77653 2356799999976655
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.||||||.|+... .. +.+.++....+. +. +.-.|++..||.||+
T Consensus 692 -~gTIreNI~fg~~~-----~~---------------------e~~~~vl~~~~L------~~--di~~Lp~Gd~T~IGe 736 (1495)
T PLN03232 692 -NATVRENILFGSDF-----ES---------------------ERYWRAIDVTAL------QH--DLDLLPGRDLTEIGE 736 (1495)
T ss_pred -cccHHHHhhcCCcc-----CH---------------------HHHHHHHHHhCC------HH--HHHhCCCCCCceecC
Confidence 67999999997421 00 111111110000 01 124578889999997
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+. ..||||||||++||||+.++|+|++||||||+||+.++.+|++. ++... .++|+|+.+|++ +....+|+|++
T Consensus 737 ~G-~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~ 811 (1495)
T PLN03232 737 RG-VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIIL 811 (1495)
T ss_pred CC-cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEE
Confidence 64 46999999999999999999999999999999999999999765 55432 467888877765 46788999999
Q ss_pred ecCCeEEEecCHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLE 414 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (991)
|++|+++++|+++++.+
T Consensus 812 L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 812 VSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EeCCEEEEecCHHHHHh
Confidence 99999999999999863
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=457.36 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=157.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee-eEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS-GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~-G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.|++|++++|+||+|||||||+++|.|.+++. + |+|.+ ++.++||+|++.+ ++.|||
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l----------~~~Iayv~Q~p~L-fngTIr 696 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI----------RGTVAYVPQVSWI-FNATVR 696 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE----------cCeEEEEcCcccc-CCCCHH
Confidence 4899999999999999999999999999999999999998 8 89985 3469999997655 468999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|||.|+.... . +.+.+++...+. + -++-.|++..+|.||++. ..|
T Consensus 697 eNI~fg~~~d-----~---------------------e~y~~vl~a~~L------~--~di~~LP~Gd~T~IGe~G-~~L 741 (1622)
T PLN03130 697 DNILFGSPFD-----P---------------------ERYERAIDVTAL------Q--HDLDLLPGGDLTEIGERG-VNI 741 (1622)
T ss_pred HHHhCCCccc-----H---------------------HHHHHHHHHhCc------H--HHHHhCCCcccccccCCC-CCC
Confidence 9999974310 0 111111111100 1 113357888999999764 569
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||||+..+|+|++||||||+||+.++.+|++ +++... .++|+|+.+||+ +....+|+|++|++|++
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999998864 566543 467888877765 56788999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+++|+++++.+
T Consensus 818 ~e~Gt~~eL~~ 828 (1622)
T PLN03130 818 KEEGTYEELSN 828 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999999863
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=379.55 Aligned_cols=225 Identities=29% Similarity=0.366 Sum_probs=195.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (991)
+...+|+|||+.|++|++.+|+|.||||||||++++.++..|+ +|+|.+||+++..+.. ++.+|+|+|+.+
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999998876542 478999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
++...||.||++|..++.+... .+...++.++|+.+||++.+|
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~--- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKAD--- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhc---
Confidence 9999999999999998766321 112345778999999998876
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.++.+|||||||||+|||||+.+|+||++|||||+|||.|+..|++.|+++-++.|.|+| .|+|-++-+-++||||.
T Consensus 137 --~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv-lITHEm~Vvk~ic~rVa 213 (339)
T COG1135 137 --RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV-LITHEMEVVKRICDRVA 213 (339)
T ss_pred --cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE-EEechHHHHHHHhhhhe
Confidence 567899999999999999999999999999999999999999999999999876655554 46677889999999999
Q ss_pred EecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 001957 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 438 (991)
+|++|+++++|+..++ |..|.+.-...|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999987 456777666777766543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=448.12 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=156.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+ ++.||+|
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g----------~i~yv~Q~~~l-~~~Ti~e 717 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG----------SVAYVPQQAWI-QNDSLRE 717 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC----------EEEEEcCCccc-cCCcHHH
Confidence 4899999999999999999999999999999999999998 99999987 48999998765 5689999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcccCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~~~~L 324 (991)
|+.|+.... .+. +.++.. .-.+.+.+ .+++..+|.+|+. ...|
T Consensus 718 NI~~g~~~~-----~~~---------------------~~~~~~---------~~~l~~~l~~~~~g~~t~ig~~-g~~L 761 (1522)
T TIGR00957 718 NILFGKALN-----EKY---------------------YQQVLE---------ACALLPDLEILPSGDRTEIGEK-GVNL 761 (1522)
T ss_pred HhhcCCccC-----HHH---------------------HHHHHH---------HhCCHHHHHhcCCCCCceecCC-CCCC
Confidence 999974210 000 000000 00011222 2456778999865 5679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI-HINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~-~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||++||||+..+|++++||||||+||+.++..+.+.+.+.. ...++|+|+++|++ .. ...+|+|++|++|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~-l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SY-LPQVDVIIVMSGGKI 839 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hh-hhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999999986531 12456777766654 33 456999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+++|+++++.+
T Consensus 840 ~~~g~~~~l~~ 850 (1522)
T TIGR00957 840 SEMGSYQELLQ 850 (1522)
T ss_pred EeeCCHHHHHh
Confidence 99999998863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=365.07 Aligned_cols=210 Identities=27% Similarity=0.383 Sum_probs=185.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (991)
.+.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++.+.+ .+|.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 456999999999999999999999999999999999999999 999999999998754 36899999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.||+.+-..+.+... ++.+..++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999999887765431 1223457889999999752 123578
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+++|||||+|||.+||||+.+|++|+||||+++||+.++.++.+.++++-+..++|+| .++|+.+|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTiv-fVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV-FVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEE-EEecCHHHHHhhhceEEEecC
Confidence 9999999999999999999999999999999999999999999999998776655555 567899999999999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=386.11 Aligned_cols=217 Identities=30% Similarity=0.445 Sum_probs=193.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc-ceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...++ |.+|+|+|+..+||+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999997775 89999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+.++... .+.+..++++.+.|+|++..| +.+++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~-----r~P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLN-----RKPLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHh-----cCcccCC
Confidence 9999998875421 112345778899999999887 4567999
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||++||||+.+|++++||||.|.||...+.++...|+++.+.. +++++.++|+..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999976544 4555556788899999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 406 QGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 45687777888753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=387.49 Aligned_cols=223 Identities=30% Similarity=0.429 Sum_probs=197.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (991)
...+|+|||+.|++||+++|+|||||||||||++|||+..|+ +|+|.+||++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 356999999999999999999999999999999999999999 9999999999998776 488999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.++...+ .+...+++++|+.++|++.++ +++.
T Consensus 94 V~~NVafGLk~~~~~~~---------------------------------~~i~~rv~e~L~lV~L~~~~~-----R~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLKK---------------------------------AEIKARVEEALELVGLEGFAD-----RKPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCCH---------------------------------HHHHHHHHHHHHHcCchhhhh-----hChh
Confidence 99999999984432110 112346788999999998765 6678
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.++.|.| .|.++|+..|+..++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT-~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT-FVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe-EEEEECCHHHHhhhccceEEccCCc
Confidence 999999999999999999999999999999999999999999999998866544 4556788999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5678888899998754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=384.59 Aligned_cols=212 Identities=35% Similarity=0.484 Sum_probs=184.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (991)
.+.+|+||||.|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 467999999999999999999999999999999999999998 99999999988652 3357899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|+|.|.+++++.... .....++++++.+||++..+ ..+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~-----~~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKAN-----KKV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhC-----cch
Confidence 999999999998765310 01234678999999998444 445
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|+++++..+.|++++ +|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis-sH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe-CCcHHHHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999987533455555 56778999999999999999
Q ss_pred eEEEecCHHHHHHHHHh
Q 001957 402 QIVYQGPRELVLEFFAS 418 (991)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (991)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=373.07 Aligned_cols=210 Identities=33% Similarity=0.435 Sum_probs=180.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (991)
+.||+|+||.+++|++++|+||||||||||||+|+|+++|. +|+|.++|+++.+...+ |.++||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999998 99999999999876543 7899999999889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|-+.++..-+.... . ...++....++..|+.+|+.+.++..+
T Consensus 92 tV~d~V~~GR~p~~~~~-----------------~-------------~~~~~D~~~v~~aL~~~~~~~la~r~~----- 136 (258)
T COG1120 92 TVYELVLLGRYPHLGLF-----------------G-------------RPSKEDEEIVEEALELLGLEHLADRPV----- 136 (258)
T ss_pred EEeehHhhcCCcccccc-----------------c-------------CCCHhHHHHHHHHHHHhCcHHHhcCcc-----
Confidence 99999999864321100 0 000111235778899999999988654
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||.||+||+++|++|+||||||.||...+.++++.+++++++.+.|+|++ .|+...+.++||++++|++|
T Consensus 137 ~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~v-lHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 137 DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV-LHDLNLAARYADHLILLKDG 215 (258)
T ss_pred cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECC
Confidence 58999999999999999999999999999999999999999999999987666666665 56788999999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=405.36 Aligned_cols=204 Identities=22% Similarity=0.331 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 35999999999999999999999999999999999999998 9999999998754321 3569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.|+.......... .. .+....++++++.+||.+..|..+
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 139 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI------DW------------------------KKMYAEADKLLARLNLRFSSDKLV---- 139 (501)
T ss_pred CcHHHHhhhccccccccCcc------CH------------------------HHHHHHHHHHHHHcCCCCCccCch----
Confidence 99999999875321100000 00 001123466899999988776544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+.+++.++||+|++|++
T Consensus 140 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii-~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 140 -GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVY-ISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeC
Confidence 57999999999999999999999999999999999999999999999865 4555555 56777899999999999999
Q ss_pred CeEEEecC
Q 001957 401 GQIVYQGP 408 (991)
Q Consensus 401 G~iv~~G~ 408 (991)
|+++..|+
T Consensus 217 G~i~~~~~ 224 (501)
T PRK10762 217 GQFIAERE 224 (501)
T ss_pred CEEEEecC
Confidence 99987654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=404.57 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+.+|+|||+.|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++||+|+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 459999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-
Q 001957 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC- 311 (991)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 311 (991)
. +++.+||+|++.+..... +.. +. +....++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999988654321 110 00 011235678899999752
Q ss_pred --ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 312 --ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 312 --~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
.| +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|+...+.
T Consensus 148 ~~~~-----~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~ 221 (529)
T PRK15134 148 KRLT-----DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLF-ITHNLSIVR 221 (529)
T ss_pred HHHh-----hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE-EcCcHHHHH
Confidence 34 3456899999999999999999999999999999999999999999999987643555554 567778889
Q ss_pred hhcCeEEEecCCeEEEecCHHH
Q 001957 390 DLFDDIILLSDGQIVYQGPREL 411 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G~~~~ 411 (991)
++||+|++|++|++++.|++++
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=405.28 Aligned_cols=202 Identities=24% Similarity=0.313 Sum_probs=162.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECC-----------------------eeC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNG-----------------------HDM 219 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG-----------------------~~~ 219 (991)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|++ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999996 577 99999972 222
Q ss_pred C-------Cc------cccceEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHH
Q 001957 220 D-------EF------VPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285 (991)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (991)
. .. ..++.++|++|+ +.+++.+||+|++.|.....+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~----------~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG----------K---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH----------H----------------
Confidence 1 00 113568999997 678888999999998754322110 0
Q ss_pred HHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001957 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (991)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~ 365 (991)
+....++++++.+||++..+. .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 011235678999999876654 4568999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCH
Q 001957 366 LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409 (991)
Q Consensus 366 L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~ 409 (991)
|+++++..+.|+| .++|+...+.++||+|++|++|++++.|+.
T Consensus 211 l~~l~~~~g~tvi-ivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 211 LEEAVKASGISMV-LTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHHHhcCcEEE-EEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 9998764455554 456777788899999999999999876643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=360.05 Aligned_cols=195 Identities=28% Similarity=0.404 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|||++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999999 999999999983 4567899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+....+.... +....++++|+.+||.+..| .++++|
T Consensus 91 ~NV~l~l~~~~~~~~----------------------------------e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSKA----------------------------------EARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccchH----------------------------------hHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 999999987652210 11124677899999998876 678899
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--Ce
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~ 402 (991)
||||||||+|||||+.+|++|+||||+++||..|+..+.+.|.++.++.+.| |+.++|+.+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT-VLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999998865544 55567899999999999999998 45
Q ss_pred EE
Q 001957 403 IV 404 (991)
Q Consensus 403 iv 404 (991)
|.
T Consensus 211 i~ 212 (248)
T COG1116 211 IG 212 (248)
T ss_pred ee
Confidence 53
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=402.39 Aligned_cols=208 Identities=25% Similarity=0.292 Sum_probs=168.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 24699999998889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++........... .... .+....++++++.+||.+..|+.+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~---~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~----- 143 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVN---IIDW------------------------REMRVRAAMMLLRVGLKVDLDEKV----- 143 (510)
T ss_pred cHHHHhhhcccccccccccc---ccCH------------------------HHHHHHHHHHHHHcCCCCCcccch-----
Confidence 99999987542100000000 0000 001123567899999987776554
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+..++.++||+|++|++|
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVY-ISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 58999999999999999999999999999999999999999999999875 4555555 567788899999999999999
Q ss_pred eEEEecCHH
Q 001957 402 QIVYQGPRE 410 (991)
Q Consensus 402 ~iv~~G~~~ 410 (991)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (510)
T PRK09700 222 SSVCSGMVS 230 (510)
T ss_pred EEeeecchh
Confidence 999887644
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=351.90 Aligned_cols=210 Identities=25% Similarity=0.366 Sum_probs=180.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (991)
.+.||+|||+.|++||+++|||||||||||||++|.|+++|+ +|+|.++|+++..... ++.+|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 456999999999999999999999999999999999999999 9999999999876542 3679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
|..|||+||+.|..+-+.. +.++ ..+..+..-|+..||... ++
T Consensus 97 FssltV~eNVafplre~~~---------lp~~------------------------~i~~lv~~KL~~VGL~~~----~~ 139 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK---------LPES------------------------LIRELVLMKLELVGLRGA----AA 139 (263)
T ss_pred ccccchhHhhheehHhhcc---------CCHH------------------------HHHHHHHHHHHhcCCChh----hh
Confidence 9999999999998764321 1111 112234455888999765 23
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.++.+||||++||+++||||+.+|++||+||||+||||.++..+.+.++++.+..+.|+++ ++|+.++++.++|+|++
T Consensus 140 ~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~-VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAV 218 (263)
T ss_pred hhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE-EECChHHHHhhhceEEE
Confidence 46889999999999999999999999999999999999999999999999998766655555 56789999999999999
Q ss_pred ecCCeEEEecCHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLE 414 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (991)
|.+|+|+.+|+++++.+
T Consensus 219 L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 219 LADGKVIAEGTPEELLA 235 (263)
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999863
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=426.73 Aligned_cols=198 Identities=26% Similarity=0.328 Sum_probs=151.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.++ ..||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 356999999999999999999999999999999999999998 9999863 4699999987654 6899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+... ..+...+ +.. ....+..++.+ ++..+|.+|. ....
T Consensus 738 ~enI~~~~~~-----~~~~~~~---------------------~~~------~~~l~~~l~~l--~~g~~t~i~~-~g~~ 782 (1560)
T PTZ00243 738 RGNILFFDEE-----DAARLAD---------------------AVR------VSQLEADLAQL--GGGLETEIGE-KGVN 782 (1560)
T ss_pred HHHHHcCChh-----hHHHHHH---------------------HHH------HhhhHHHHHHh--hccchHHhcC-CCCC
Confidence 9999985311 0000000 000 00112234443 3334566764 4678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++++|||||++||+.++..+++.+..... .++|+|+++|++ .. ...+|+|++|++|++
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HV-VPRADYVVALGDGRV 859 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999875432222 467777766554 33 468999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+++|+.+++.
T Consensus 860 ~~~G~~~~l~ 869 (1560)
T PTZ00243 860 EFSGSSADFM 869 (1560)
T ss_pred EEecCHHHHH
Confidence 9999998875
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=346.79 Aligned_cols=222 Identities=27% Similarity=0.412 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (991)
+++|+|||+.|+++++|||||||||||||||++|.++.+ +..+++|+|.|+|+++.+. ..++.+|+|+|.++.
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999999865 4567899999999998653 236889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
|| +|++||+.|+.+++|... ..+.+ +++..|+.-.|- +..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh-
Confidence 99 999999999999987643 11111 223333333332 122221
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++...+|||||+||++|||+|+-+|+||+||||||+|||.++..|-+++.++.+ .-|+|| ++|.+..+.+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIvi-VTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVI-VTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEE-EeCCHHHHHHHhHhhh
Confidence 234568999999999999999999999999999999999999999999999853 455555 4678899999999999
Q ss_pred EecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
++..|++|++|+.+++ |..|.++.+.||+.
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 9999999999999987 45688777777753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=404.60 Aligned_cols=208 Identities=23% Similarity=0.254 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----------cc------c-cce
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------P-QRT 227 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------~~------~-~~~ 227 (991)
..+|+||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|..+.. .. . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999998 9999999975411 01 1 136
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
++||+|++ .+++.+||+||+.++.+.+ +... . +....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASR----------E------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHH
Confidence 89999986 5788899999999986542 2110 0 01123567889
Q ss_pred HcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecC
Q 001957 305 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (991)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~ 384 (991)
.+||++..+ .-+.++.+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++++..+.| |+.++|+
T Consensus 152 ~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~t-vi~itHd 228 (623)
T PRK10261 152 QVRIPEAQT--ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG-VIFITHD 228 (623)
T ss_pred HCCCCChhh--HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCE-EEEEcCC
Confidence 999964210 1134567899999999999999999999999999999999999999999999987644555 5556788
Q ss_pred CchhHhhcCeEEEecCCeEEEecCHHHH
Q 001957 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 385 ~~~~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
..++.++||+|++|++|++++.|+++++
T Consensus 229 l~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 229 MGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 8899999999999999999999987765
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=363.20 Aligned_cols=224 Identities=30% Similarity=0.456 Sum_probs=190.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe---eCCCccc-cceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (991)
...+++|||+.|+.||++||+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+-.+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456899999999999999999999999999999999999999 999999999 6655333 488999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+|||.+|+.|+.+++.... .+ .+.+..++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~p-----~~---------------------------~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKERP-----SE---------------------------AEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccCC-----Ch---------------------------hhHHHHHHHHHHHhcccchhh-----c
Confidence 9999999999998762111 01 112235677899999987665 7
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||++||||+..|++|+||||+++||..-+.++-+.|+++....+.|+|+ ++|+.+|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEec
Confidence 789999999999999999999999999999999999999999999999987654555555 5688999999999999999
Q ss_pred CCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
+|+|...||++++ |..|...-++.|+-++
T Consensus 213 ~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 213 QGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred CCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 9999999999998 4456666666665443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=396.25 Aligned_cols=200 Identities=26% Similarity=0.349 Sum_probs=163.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 5999999999999999999999999999999999999998 999999999875432 135799999998889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++......+. .. . .+....++.+++.+||++..+.. +
T Consensus 95 tv~~~l~~~~~~~~~~~----~~---~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGI----VN---R------------------------RLLNYEAREQLEHLGVDIDPDTP-----L 138 (501)
T ss_pred CHHHHHHhcccccccCC----CC---H------------------------HHHHHHHHHHHHHcCCCCCcCCc-----h
Confidence 99999998642110000 00 0 00112345688999998666544 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii-itHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILY-VSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865 4555555 556777899999999999999
Q ss_pred eEEEe
Q 001957 402 QIVYQ 406 (991)
Q Consensus 402 ~iv~~ 406 (991)
+++..
T Consensus 217 ~i~~~ 221 (501)
T PRK11288 217 RYVAT 221 (501)
T ss_pred EEEee
Confidence 98753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=350.09 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=182.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDN 236 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~ 236 (991)
..+++|+|||+.|++||+++|+|||||||||||++|+|+.+++ +|+|.+||.++.... .++.+|||+|+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3467999999999999999999999999999999999999998 999999998876543 2468999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+.+||.+|+..+..-+..- ...+ -++.+ ++.+..+-..|+.+|+.+.+-++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~-----~~sl------fglfs---------------k~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTST-----WRSL------FGLFS---------------KEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccchH-----HHHH------hCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHh
Confidence 999999999999886433210 0000 01100 111223445789999998887766
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+ .|||||+|||+|||+|+.+|++++.|||+++||+.++.++|+.|++++++.|.|+|+.+| ..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH-~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH-QVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec-hHHHHHHHHhhhe
Confidence 4 799999999999999999999999999999999999999999999999887888887765 5778999999999
Q ss_pred EecCCeEEEecCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (991)
-|++|+|+|+||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=354.29 Aligned_cols=196 Identities=30% Similarity=0.430 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
.++|++||+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..... ++.+|||+|+.++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999999876542 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
+|.+||+||+.+.+...+...+ ......+.+++.+||.+..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999998776544210 01123566889999986655
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.++.+|||||||||+|||||+.+|++++.||||..||+.++..|++.|+++.++.+.|+|+++| + +++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH-d-~~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH-D-PELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC-C-HHHHHhCCEEEE
Confidence 24567999999999999999999999999999999999999999999999998766667776654 3 478889999999
Q ss_pred ecCCeE
Q 001957 398 LSDGQI 403 (991)
Q Consensus 398 L~~G~i 403 (991)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=427.06 Aligned_cols=197 Identities=24% Similarity=0.383 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++ .||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g----------~iayv~Q~~~l~~-~Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG----------RISFSPQTSWIMP-GTIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC----------EEEEEeCCCccCC-ccHH
Confidence 45999999999999999999999999999999999999998 99999998 3899999987766 5999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.... ..++ .+. .++. ..+..++. +++..+|.||+. ...|
T Consensus 505 eNI~~g~~~~--~~~~---~~~------------------~~~~---------~L~~~l~~--l~~g~~t~vg~~-g~~L 549 (1490)
T TIGR01271 505 DNIIFGLSYD--EYRY---TSV------------------IKAC---------QLEEDIAL--FPEKDKTVLGEG-GITL 549 (1490)
T ss_pred HHHHhccccc--hHHH---HHH------------------HHHH---------hHHHHHHh--ccccccccccCc-CCCc
Confidence 9999974311 0000 000 0000 01112222 345567888865 5679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||||++.+|++++|||||+|||+.++..+.+ +++++. .++|+|+++|++. .+ ..+|+|++|++|++
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE-HL-KKADKILLLHEGVC 625 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH-HH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999997 466654 3677777776653 44 56999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+.+++..
T Consensus 626 ~~~g~~~~l~~ 636 (1490)
T TIGR01271 626 YFYGTFSELQA 636 (1490)
T ss_pred EEEcCHHHHHh
Confidence 99999988863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=394.78 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=164.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 3599999999999999999999999999999999999886 5 8999999998865332 24699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++......+... .. .+....++++++.+||.+..+ +
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~----~ 136 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRM------AY------------------------NAMYLRAKNLLRELQLDADNV----T 136 (500)
T ss_pred CCCcHHHHHHhhcccccccccc------CH------------------------HHHHHHHHHHHHHcCCCCCcc----c
Confidence 9999999998865321000000 00 001123566889999976542 1
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++|
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-itHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVY-ISHKLNEVKAVCDTICVI 214 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCcHHHHHHhCCEEEEE
Confidence 23468999999999999999999999999999999999999999999999865 4555554 567788999999999999
Q ss_pred cCCeEEEec
Q 001957 399 SDGQIVYQG 407 (991)
Q Consensus 399 ~~G~iv~~G 407 (991)
++|++++.|
T Consensus 215 ~~G~i~~~~ 223 (500)
T TIGR02633 215 RDGQHVATK 223 (500)
T ss_pred eCCeEeeec
Confidence 999998654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=355.85 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=175.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC--CCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (991)
.+|+|||+.+++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+......+..+|||||.. ..-+.+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4999999999999999999999999999999999999998 999999999987765567899999964 34566899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|.+..+..-+.. ......+ +....+++.|+.+|+.+.+|..+| .
T Consensus 95 ~d~V~~g~~~~~g-----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~-----~ 139 (254)
T COG1121 95 KDVVLLGRYGKKG-----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIG-----E 139 (254)
T ss_pred HHHHHccCccccc-----ccccccH-------------------------HHHHHHHHHHHHcCchhhhCCccc-----c
Confidence 9999987432210 0000011 112457889999999999987776 7
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.++ |+ +|+.++|+...+.++||+|++|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~-tIl~vtHDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK-TVLMVTHDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC-EEEEEeCCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999764 54 45556889999999999999995 788
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 99999988753
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=340.85 Aligned_cols=210 Identities=30% Similarity=0.360 Sum_probs=184.0
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCC
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHI 238 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~ 238 (991)
.+...++++||||.++.||+++|+|||||||||+|++|++++.|+ +|.|++||.+..+.+ .++.+|.++.+..++
T Consensus 11 y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred ccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChh
Confidence 334455999999999999999999999999999999999999999 999999999875433 358899999888899
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
..||++|||.|.+++.+.. +. +.+..++++.+.|+|.+|.|+.+|
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~----------~~------------------------~~kari~~l~k~l~l~~~~~rRv~- 132 (245)
T COG4555 88 ARLTARENLKYFARLNGLS----------RK------------------------EIKARIAELSKRLQLLEYLDRRVG- 132 (245)
T ss_pred hhhhHHHHHHHHHHHhhhh----------hh------------------------HHHHHHHHHHHHhChHHHHHHHHh-
Confidence 9999999999999887542 11 122356778999999999999887
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .++++|.+ +|.++|+..+||+|++|
T Consensus 133 ----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFS-SH~m~EvealCDrvivl 206 (245)
T COG4555 133 ----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFS-SHIMQEVEALCDRVIVL 206 (245)
T ss_pred ----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEe-cccHHHHHHhhheEEEE
Confidence 6999999999999999999999999999999999999999999999743 46666655 67899999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
++|++|+.|+++.+..
T Consensus 207 h~Gevv~~gs~~~l~~ 222 (245)
T COG4555 207 HKGEVVLEGSIEALDA 222 (245)
T ss_pred ecCcEEEcCCHHHHHH
Confidence 9999999999988764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=394.18 Aligned_cols=227 Identities=22% Similarity=0.392 Sum_probs=188.6
Q ss_pred CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 001957 115 PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTL 194 (991)
Q Consensus 115 p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTL 194 (991)
.+..|+|+|+++.|.. + +...||||+||+|+|||.+||+||||+||||+
T Consensus 462 ~~G~IeF~~VsFaYP~------------------------------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTi 510 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPT------------------------------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTI 510 (716)
T ss_pred ccceEEEEEeeeecCC------------------------------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHH
Confidence 3678999999998742 2 34679999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHH
Q 001957 195 LLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (991)
Q Consensus 195 L~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (991)
.++|-++|+|+ +|+|++||+|+.++++ ++.+|+|.|++.+| .-||+|||.|+.. ....++..+..+.
T Consensus 511 asLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~----~~t~e~i~~AAk~-- 580 (716)
T KOG0058|consen 511 ASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD----NATDEEIEAAAKM-- 580 (716)
T ss_pred HHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC----CCCHHHHHHHHHH--
Confidence 99999999999 9999999999988775 47899999988765 5799999999864 1111111111111
Q ss_pred HcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCC
Q 001957 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (991)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPT 351 (991)
.+..-.+.++++.+||.||++. .+||||||||++|||||++||+||||||.|
T Consensus 581 ---------------------------ANah~FI~~~p~gY~T~VGEkG-~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 581 ---------------------------ANAHEFITNFPDGYNTVVGEKG-SQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred ---------------------------hChHHHHHhCccccccccCCcc-ccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 1112346789999999999654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||+++...+.+.|.++.+ +.|+++. . |+-++.+.+|+|+++++|++++.|+++|+++
T Consensus 633 SALDaeSE~lVq~aL~~~~~--~rTVlvI-A-HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 633 SALDAESEYLVQEALDRLMQ--GRTVLVI-A-HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhcchhhHHHHHHHHHHhhc--CCeEEEE-e-hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999998764 4565554 3 3568999999999999999999999999974
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=370.09 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876432 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.|.....+... . +....+.++++.+||.+..|.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~v~e~l~~vgL~~~~~~---- 136 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------D------------------------EIKRKVTELLALVGLGDKHDS---- 136 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhC----
Confidence 99999999999765432210 0 011235678999999887764
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..+.|+|+ ++|..+.+.++||+|++|
T Consensus 137 -~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil-iTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 137 -YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 456899999999999999999999999999999999999999999999987644666555 566788999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=372.50 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=178.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 35899999999999999999999999999999999999998 9999999999875443 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+++
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~-----~~~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERK-----YPGQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhC-----Chhh
Confidence 999999876432110 0012246778999999887764 5578
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+..+.|+|++ +|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v-THd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV-THDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876445555554 5677899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999885
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=372.58 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=177.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.+||.++....+ ++.++||+|+..++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876543 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+++
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDR-----KPRE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhC-----Chhh
Confidence 999999876432110 0011245678999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY-VTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999987644555555 55677899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=370.73 Aligned_cols=218 Identities=25% Similarity=0.380 Sum_probs=184.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 34899999999999999999999999999999999999998 9999999999876544 3789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++.... +....++++++.+||.+..| ++++.
T Consensus 96 ~eNi~~~l~~~~~~~~----------------------------------~~~~~v~~~l~~~gl~~~~~-----r~~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPKE----------------------------------ERKQRVKEALELVDLAGFED-----RYVDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhc-----CChhh
Confidence 9999998765432110 01224567899999987765 45678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644555555 56777899999999999999999
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 404 VYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
+..|+++++.. .|...-.+.|+
T Consensus 216 ~~~g~~~~~~~--------~p~~~~~a~~~ 237 (351)
T PRK11432 216 MQIGSPQELYR--------QPASRFMASFM 237 (351)
T ss_pred EEEcCHHHHHh--------CCCchHHHHhc
Confidence 99999998742 35544455554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=371.25 Aligned_cols=206 Identities=23% Similarity=0.345 Sum_probs=177.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee--eEEEECCeeCCCccc-cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~--G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..++|.+|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 5999999999999999999999999999999999999998 8 999999999865443 467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.++... .+....++++++.+||++..|. .++
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~-----~~~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAH-----LPA 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhC-----Chh
Confidence 9999999876543210 0011245678999999887765 456
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764323444555677889999999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=397.05 Aligned_cols=258 Identities=26% Similarity=0.364 Sum_probs=207.9
Q ss_pred HHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.|+.+...+|+..+++.++|.-..+. ....+....+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 46778888999998888877221110 1223334678999999999842
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
....+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|++||.+++..++ ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1125999999999999999999999999999999999999998 9999999999987654 5899999995
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+ ++++.||+||+.++.- . .+.+..+++....+. .-.+..++..+||
T Consensus 556 ~-~Lf~gSI~eNi~l~~p----~---------------------~~~e~i~~A~~~ag~--------~~fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGNP----E---------------------ATDEEIIEAAQLAGA--------HEFIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCCC----C---------------------CCHHHHHHHHHHhCc--------HHHHHhccccccc
Confidence 5 6678899999998741 1 111222222222211 1235679999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||+ +..+||||||||++|||||+++|+||+||||||+||+.+...|++.|+++. .++|+|+..|. ..+.+.||+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHR--l~ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHR--LSTIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEcc--chHhhhccE
Confidence 9995 566899999999999999999999999999999999999999999999975 45777776654 478999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||++|+++.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.30 Aligned_cols=218 Identities=28% Similarity=0.364 Sum_probs=185.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+||.+||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999875443 47799999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.+.++... . +....++++++.+||++..|. ++.+|
T Consensus 105 eNi~~~l~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~p~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------A------------------------EITPRVMEALRMVQLEEFAQR-----KPHQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhC-----ChhhC
Confidence 99999875432210 0 011235678999999887764 45689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+|||+|+.+|++|+||||++|||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987654555555 567788999999999999999999
Q ss_pred EecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 405 ~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
..|+++++. ..|....+|+|+-
T Consensus 225 ~~g~~~~i~--------~~p~~~~~a~~~g 246 (375)
T PRK09452 225 QDGTPREIY--------EEPKNLFVARFIG 246 (375)
T ss_pred EEcCHHHHH--------hCcccHHHHHhcC
Confidence 999999874 3566666666653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=360.83 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|+..+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999986432 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|.++.++.... +....++++++.++|.+.+++.+ +
T Consensus 97 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSAA----------------------------------AARALVPPLLEFAKLENKADAKV-----G 137 (306)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcCch-----h
Confidence 99999987765432110 01123466889999998888766 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999864 45565555 567789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=383.90 Aligned_cols=194 Identities=22% Similarity=0.226 Sum_probs=158.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCC--C--
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNH--I-- 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~--~-- 238 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+... +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4999999999999999999999999999999999999998 999999998764322 12458999997532 1
Q ss_pred ----CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 239 ----GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
..+||+|++.+... ....++.+++.+||++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhhC
Confidence 14677777653210 01124567889999877665
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+...+.++||+
T Consensus 132 ~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii-~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 R-----FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVL-VLNRFDEIPDFVQF 204 (490)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEE-EeCCHHHHHhhCCE
Confidence 4 458999999999999999999999999999999999999999999999865 4556555 45677889999999
Q ss_pred EEEecCCeEEEecCHHH
Q 001957 395 IILLSDGQIVYQGPREL 411 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (991)
|++|++|++++.|++++
T Consensus 205 v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 205 AGVLADCTLAETGEREE 221 (490)
T ss_pred EEEEECCEEEEeCCHHH
Confidence 99999999998876543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=347.42 Aligned_cols=207 Identities=29% Similarity=0.422 Sum_probs=179.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC----CccccceEEEEecC-CCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQH-DNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----~~~~~~~~~yv~Q~-d~~~~ 239 (991)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.++. ....++.+|||+|+ |..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 46999999999999999999999999999999999999998 999999999875 22346889999999 56688
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.-||.|.++|+....+.... +...+++.+|+.+||.+.+| +
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhcc-----C
Confidence 89999999999887654310 12235678899999998876 5
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+. ++.+||.++|+.+.+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999764 34444555788999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=364.59 Aligned_cols=210 Identities=28% Similarity=0.379 Sum_probs=176.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|++||+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999999865433 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+........ .+ .+....++++++.++|++..|. ++..
T Consensus 92 ~eni~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRERP------NA------------------------AAIKAKVTQLLEMVQLAHLADR-----YPAQ 136 (353)
T ss_pred HHHHHhhhhhcccccCC------CH------------------------HHHHHHHHHHHHHcCCchhhhC-----Chhh
Confidence 99999986542100000 00 0011245678999999877664 4578
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti-i~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876435554 4456788899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=334.76 Aligned_cols=205 Identities=27% Similarity=0.325 Sum_probs=177.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCC--CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (991)
.+|+|||++|.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998776532 357899999985 5789
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||++.|.-+.+..+.... ...+.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~------------------------------------~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKS------------------------------------QQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccHH------------------------------------HHHHHHHHHHcCCCHHH----Hhc
Confidence 99999999887765433210 11245689999998643 247
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||+|||||+.+|++|++|||||+||+....+|++.|.++.+.. +.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 788999999999999999999999999999999999999999999999998754 4555667789999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=345.10 Aligned_cols=207 Identities=29% Similarity=0.374 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 35999999999999999999999999999999999999998 999999999876432 245799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++......... . +....++++++.+||.+..++.
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 133 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------E------------------------EIREIVLEKLEAVGLRGAEDLY--- 133 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------H------------------------HHHHHHHHHHHHcCCchhhcCC---
Confidence 999999999987542110000 0 0112345678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|++ +|..+++.++||+|++|
T Consensus 134 --~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sH~~~~~~~~~d~v~~l 210 (235)
T cd03261 134 --PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV-THDLDTAFAIADRIAVL 210 (235)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhcCEEEEE
Confidence 458999999999999999999999999999999999999999999999875335565555 56677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=320.47 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=174.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
.+++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.....+ +|-+++++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467899999999999999999999999999999998 9999999999876655 478999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
++.. ++-+. .+ .....++.++..+||..+.+ +.+.+|||||
T Consensus 94 LGl~---P~LkL---~a----------------------------~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL---NA----------------------------EQREKVEAAAAQVGLAGFLK-----RLPGELSGGQ 134 (231)
T ss_pred ccCC---ccccc---CH----------------------------HHHHHHHHHHHHhChhhHhh-----hCccccCchH
Confidence 9864 21110 00 01124567888999998876 4556899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||++||+|+++-+||+||||+|+||+.-+.++...+.+++.+++.|+++.+||| +++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999999988777887776665 58999999999999999999999
Q ss_pred HHHHH
Q 001957 409 RELVL 413 (991)
Q Consensus 409 ~~~~~ 413 (991)
.++.+
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98765
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=363.77 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=176.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||.
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 5899999999999999999999999999999999999998 9999999999865443 47899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.+.++... .+....++++++.+||.+..| +.+.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~-----~~~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAK-----RKPHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-----CChhhC
Confidence 99999876432210 001124567899999987665 455789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999987655555555 567788999999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=329.91 Aligned_cols=207 Identities=24% Similarity=0.387 Sum_probs=175.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (991)
+.+||++||+.+++||+++|+|||||||||||++|+|..++. +|+|.++|++++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 467999999999999999999999999999999999999998 99999999999887653 56899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (991)
.|||+|||..++...... +.. ....|.+.+.| .|.+..+..-|
T Consensus 92 ~LTVeENL~~g~~~~~~~-----------~~~------------------------~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 92 RLTVEENLLLGAYARRDK-----------EAQ------------------------ERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred hCcHHHHHhhhhhccccc-----------ccc------------------------cccHHHHHHHChhHHHHhcCccc-
Confidence 999999999986532110 000 00023344444 35555555544
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++++.+. ++.+|+.+.|....+.+++|+.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEE
Confidence 79999999999999999999999999999999999999999999999764 4467777899999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
.+|+|++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=362.32 Aligned_cols=207 Identities=22% Similarity=0.307 Sum_probs=178.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.|+.+..+.... +....+.++++.+||++..++
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~vgL~~~~~~-- 125 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQ----------------------------------ERKEKALELLKLVGLEEYEHR-- 125 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHhcCCchhhhC--
Confidence 99999999999998765432100 011235678999999876664
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|+ ++|...++..++|+|+
T Consensus 126 ---~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~-vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 126 ---YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF-ITHDLDEAIRIGDRIV 201 (363)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEE
Confidence 456899999999999999999999999999999999999999999999986544555555 5677889999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|+++..|+++++.
T Consensus 202 vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEeCCEEEeeCCHHHHH
Confidence 99999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=363.29 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=175.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+..+... . +....++++++.+||++..|.. +.+
T Consensus 93 ~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~lgL~~~~~~~-----~~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------E------------------------EINQRVNQVAEVLQLAHLLDRK-----PKA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCC-----hhh
Confidence 999999865432210 0 0112356789999998776654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++.+..+.|+|++ +|+..++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~v-THd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV-THDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876445555554 5677799999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=368.31 Aligned_cols=219 Identities=23% Similarity=0.282 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++.+||.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcHH
Confidence 45999999999999999999999999999999999999998 999999752 4689999999888999999
Q ss_pred HHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHH-------HHHHh-hhhhhhHHHHHHHHHcCCccccccc
Q 001957 245 ETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYM-------KAIAT-EGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 245 E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
||+.++... .+. .....+...... .++.+.+... +.... ...+....++.+++.+||+. .|.
T Consensus 89 e~l~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~- 159 (556)
T PRK11819 89 ENVEEGVAEVKAA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA- 159 (556)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC-
Confidence 999986421 000 000000000000 0000000000 00000 00112345677899999953 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+| .++|+..++.+++|+|
T Consensus 160 ----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvi-iisHd~~~~~~~~d~i 230 (556)
T PRK11819 160 ----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVV-AVTHDRYFLDNVAGWI 230 (556)
T ss_pred ----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEE-EEeCCHHHHHhhcCeE
Confidence 44689999999999999999999999999999999999999999999875 24554 4567788999999999
Q ss_pred EEecCCeEE-EecCHHHH
Q 001957 396 ILLSDGQIV-YQGPRELV 412 (991)
Q Consensus 396 ilL~~G~iv-~~G~~~~~ 412 (991)
++|++|+++ +.|+.++.
T Consensus 231 ~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999986 88876654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=318.83 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=175.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~ 237 (991)
...+|+||||.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++.... .+|.+|+|+|+.-+
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccc
Confidence 356999999999999999999999999999999999999999 999999999987543 25889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||++|+.+..|...+ +.+..+.++|+..||.+.++
T Consensus 91 L~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~rV~~~L~~VgL~~k~~---- 132 (223)
T COG2884 91 LPDRTVYENVALPLRVIGKPPR----------------------------------EIRRRVSEVLDLVGLKHKAR---- 132 (223)
T ss_pred cccchHhhhhhhhhhccCCCHH----------------------------------HHHHHHHHHHHHhccchhhh----
Confidence 9999999999999987764321 12345677899999998876
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..+.+|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++-+ .|+|++++ +|+..-+..+--+++.
T Consensus 133 -~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~A-THd~~lv~~~~~rvl~ 209 (223)
T COG2884 133 -ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMA-THDLELVNRMRHRVLA 209 (223)
T ss_pred -cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEE-eccHHHHHhccCcEEE
Confidence 45679999999999999999999999999999999999999999999999854 56666665 5677777888889999
Q ss_pred ecCCeEEEecC
Q 001957 398 LSDGQIVYQGP 408 (991)
Q Consensus 398 L~~G~iv~~G~ 408 (991)
|++|+++....
T Consensus 210 l~~Grl~~d~~ 220 (223)
T COG2884 210 LEDGRLVRDES 220 (223)
T ss_pred EeCCEEEeccc
Confidence 99999997654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=361.74 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=190.2
Q ss_pred cCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCC
Q 001957 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (991)
Q Consensus 110 ~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGs 189 (991)
..+..|.-.|+|+|+++++. ++++||++|||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677888899999999873 123499999999999999999999999
Q ss_pred cHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHH
Q 001957 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (991)
Q Consensus 190 GKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (991)
||||+||+|.++++ . +|+|.+||+++++... ++.+||||| |.++++-||.+|+.++-. ...++..-+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQ-d~~LFndTIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQ-DSVLFNDTILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCC-cccccchhHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999998 5 9999999999987653 578999999 566778899999999742 2222222222
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeE
Q 001957 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (991)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLl 346 (991)
. |.+++ + --+..|++.++|.||+++. -|||||||||++||+++.+|+|++
T Consensus 461 ~---k~a~~------------------------h--d~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 C---KRAGL------------------------H--DVISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred H---HHcCc------------------------H--HHHHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 2 22221 0 1245689999999997665 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 347 lDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|||||.||+.|..++++.++... .++|+|+..|. ..+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~--l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHR--LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEec--chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999843 57788887754 36788899999999999999999999985
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=334.04 Aligned_cols=221 Identities=28% Similarity=0.403 Sum_probs=186.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+...+++|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++++...++ .-++.-+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 5678999999999999999999999999999999999999999 99999999999887764 3567889999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.|||.||+..++..+..-. ..+. ..+.. .+..+.......+|+.+||.+.+|+..|
T Consensus 92 ~~lTVlENv~va~~~~~~~~--~~l~-~~~~~-------------------~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLS--GLLG-RPRAR-------------------KEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhh--hhhc-cccch-------------------hhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 99999999999876542100 0000 00000 0001122345678999999999998876
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.|.|++..++.+||||+||
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 6999999999999999999999999999999999999999999999876 45577777899999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999863
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=357.63 Aligned_cols=206 Identities=27% Similarity=0.355 Sum_probs=175.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999998 9999999999865432 35799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~--- 137 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------A------------------------EIKARVTELLELVGLSDKADRY--- 137 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC---
Confidence 99999999999765432210 0 0112346688999998776654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|...++.++||+|++|
T Consensus 138 --~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv-tH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 138 --PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI-THEMDVVKRICDRVAVI 214 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999876445565554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=355.81 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|....++.... +....++++++.++|.+..++.+ +
T Consensus 131 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~ll~~~~L~~~~~~~~-----~ 171 (340)
T PRK13536 131 VRENLLVFGRYFGMSTR----------------------------------EIEAVIPSLLEFARLESKADARV-----S 171 (340)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhCCCh-----h
Confidence 99999986654432100 00113456788999998887665 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45665555 567889999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++++|+++++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=354.61 Aligned_cols=206 Identities=28% Similarity=0.373 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 2357999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.+++++.... .....++++++.+||.+..|+.+ +
T Consensus 83 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKD----------------------------------EAEERAEELLELFELGEAADRPV-----G 123 (302)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCChhHhCCch-----h
Confidence 99999997765432100 01123567899999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~-sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45565554 567789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=366.05 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=162.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|+..+++.+||+|
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCCcHHH
Confidence 5999999999999999999999999999999999999998 999999873 35899999988889999999
Q ss_pred HHHHHHH-hcCCCchhhhhHHHHHHHHHcCCC--CCCC---hHHHHHH-HHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 246 TLAFSAR-CQGVGTRYEMLTELARREKAAGIK--PDPD---IDVYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 246 ~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
++.++.. .... .. ......... ...+ .+..... ....+.+....++.+++.+||++..+ +
T Consensus 84 ~l~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~ 150 (530)
T PRK15064 84 TVIMGHTELWEV------KQ---ERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----Y 150 (530)
T ss_pred HHHHhhHHHHHH------HH---HHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----c
Confidence 9988631 1000 00 000000000 0000 0000000 00001112345678899999975332 1
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .+.|+|+ ++|+...+.++||+|++|
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiii-vsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMII-ISHDRHFLNSVCTHMADL 225 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEE-EeCCHHHHHhhcceEEEE
Confidence 23468999999999999999999999999999999999999999999864 3455544 567788899999999999
Q ss_pred cCCeE-EEecCHHHHH
Q 001957 399 SDGQI-VYQGPRELVL 413 (991)
Q Consensus 399 ~~G~i-v~~G~~~~~~ 413 (991)
++|++ ++.|+.++.+
T Consensus 226 ~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 226 DYGELRVYPGNYDEYM 241 (530)
T ss_pred eCCEEEEecCCHHHHH
Confidence 99999 5888877654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=365.37 Aligned_cols=220 Identities=22% Similarity=0.265 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+++ ...++||+|++.+++.+||+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP--------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC--------CCEEEEEeccCCCCCCCcHH
Confidence 35999999999999999999999999999999999999998 99999975 24699999999888999999
Q ss_pred HHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCh-------HHHHHHHHhhh-hhhhHHHHHHHHHcCCccccccc
Q 001957 245 ETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDI-------DVYMKAIATEG-QEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 245 E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
||+.++... .+. ..+......... .++.+. ....+.....+ ......++++++.+||+. .|.
T Consensus 87 e~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~- 157 (552)
T TIGR03719 87 ENVEEGVAEIKDA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA- 157 (552)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-
Confidence 999986421 000 000000000000 000000 00000111011 111234567888999953 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ ++|+|+ ++|+...+..+||+|
T Consensus 158 ----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIi-isHd~~~~~~~~d~v 228 (552)
T TIGR03719 158 ----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVA-VTHDRYFLDNVAGWI 228 (552)
T ss_pred ----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEE-EeCCHHHHHhhcCeE
Confidence 44689999999999999999999999999999999999999999999874 245444 567888999999999
Q ss_pred EEecCCeEE-EecCHHHHH
Q 001957 396 ILLSDGQIV-YQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv-~~G~~~~~~ 413 (991)
++|++|+++ +.|+.++..
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 999999976 778776553
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=335.17 Aligned_cols=200 Identities=29% Similarity=0.430 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 35999999999999999999999999999999999999998 9999999998764322 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.++....+... . .....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------A------------------------EIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999998754321100 0 00112456788999987666544 57
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|...++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY-VTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987534556555 45667788999999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=348.08 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=176.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCC-CC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999986532 2467999999853 45
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--ccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (991)
+.+||+||+.|+....+... .+....++++++.+||. +..|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~--- 139 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLSE----------------------------------EEIENRVKRAMNIVGLDYEDYKD--- 139 (287)
T ss_pred ccccHHHHHHhHHHHCCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhcc---
Confidence 57899999998754322110 00112356789999996 4444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+ ++|...++.++||+|+
T Consensus 140 --~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 140 --KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL-VSHSMEDVAKLADRII 216 (287)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEE
Confidence 4457899999999999999999999999999999999999999999999987643555555 4566778889999999
Q ss_pred EecCCeEEEecCHHHHHH---HHHhcCCCCCC
Q 001957 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (991)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23345665554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=374.80 Aligned_cols=194 Identities=33% Similarity=0.468 Sum_probs=157.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+|||++|++|+++||+||-|||||+||.+|.|.++.. +|+|.++|. ++||+|++.+ .+.|||||
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI-~ngTvreN 601 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWI-QNGTVREN 601 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHh-hCCcHHHh
Confidence 899999999999999999999999999999999999886 999999985 8999998764 57899999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
|.|+.... ..+|+. ..++-+. +.-|+ -|+.+-.|.||++++ .|||
T Consensus 602 ILFG~~~d--~~rY~~---------------------Vi~aC~L---------~~Dle--~Lp~GD~TeIGErGi-nLSG 646 (1381)
T KOG0054|consen 602 ILFGSPYD--EERYDK---------------------VIKACAL---------KKDLE--ILPFGDLTEIGERGI-NLSG 646 (1381)
T ss_pred hhcCcccc--HHHHHH---------------------HHHHccC---------HhHHh--hcCCCCcceecCCcc-CCcH
Confidence 99986431 011110 0111100 00122 256677899997766 5999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||+++|||+-++++|++||.|.|++|+++...|.+ +++.+. .++|+|+.+|| -+....+|.|++|++|+|+.
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQ--LQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCc--hhhhhhCCEEEEecCCeEec
Confidence 99999999999999999999999999999999999885 554432 46788877764 57888999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+.+|++
T Consensus 723 ~Gty~el~ 730 (1381)
T KOG0054|consen 723 SGTYEELL 730 (1381)
T ss_pred ccCHHHHH
Confidence 99999998
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=334.86 Aligned_cols=205 Identities=29% Similarity=0.373 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35999999999999999999999999999999999999998 999999998875321 2357899999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..+..+... . +....++++++.+||++..|+.+ .
T Consensus 90 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------A------------------------ERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999998764432110 0 01123467889999987766544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+ ++|..+++.+++|++++|.+|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL-TTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999987633555555 5667778999999999999999
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=349.28 Aligned_cols=206 Identities=29% Similarity=0.399 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999998 999999999875322 2467999999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... . +....++.+++.++|.+..++.+ +
T Consensus 94 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~l~~~~~~~~-----~ 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADVRV-----A 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhHhcCch-----h
Confidence 9999987654332110 0 00112456788999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~-sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45565554 566779999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=337.15 Aligned_cols=209 Identities=31% Similarity=0.403 Sum_probs=171.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 35799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.++....+...+. +. .+....++.+++.+||.+..++. +..|
T Consensus 93 e~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERP-------------------PE-----------AEIRAKVHELLKLVQLDWLADRY-----PAQL 137 (239)
T ss_pred HHHhhhhhhccccccC-------------------CH-----------HHHHHHHHHHHHHcCChhhhhcC-----hhhC
Confidence 9999875432110000 00 00112345678999997766654 4589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++. |...++.+++|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT-HDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999998764456666654 5567889999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=347.14 Aligned_cols=218 Identities=24% Similarity=0.350 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999999998 99999999987531 1235799999985 3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++..||+||+.|+....+... .+....++++++.+||. +..++
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLAR- 141 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhC-
Confidence 4556899999998764332110 00112356789999996 44554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv 216 (290)
T PRK13634 142 ----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQI 216 (290)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999876445555554 56777899999999
Q ss_pred EEecCCeEEEecCHHHHH---HHHHhcCCCCCC
Q 001957 396 ILLSDGQIVYQGPRELVL---EFFASMGFRCPK 425 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 425 (991)
++|++|++++.|+++++. ..+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999988874 234444555444
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=346.90 Aligned_cols=224 Identities=27% Similarity=0.371 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1235799999985 34
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
++..||.|++.|+....+... . +....+.++++.+||. ...+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~--- 139 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------E------------------------KAEKIAAEKLEMVGLADEFWE--- 139 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhcc---
Confidence 555799999999865432210 0 0112356678899995 3444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|+..++.++||+|+
T Consensus 140 --~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~v-tHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 --KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLV-THLMDDVADYADYVY 215 (288)
T ss_pred --CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEE
Confidence 44578999999999999999999999999999999999999999999999865 45565555 566778999999999
Q ss_pred EecCCeEEEecCHHHHH---HHHHhcCCCCCCCCCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 433 (991)
+|++|+++++|+++++. +++...|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556788777655554444
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=336.27 Aligned_cols=205 Identities=30% Similarity=0.384 Sum_probs=171.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 999999999876432 1357899999998889
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+.....+... . .....++++++.+||++..+..
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 137 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------A------------------------EIEERVLELLELVGLEDKADAY---- 137 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhhcC----
Confidence 9999999998754322100 0 0011345678999998776654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|+
T Consensus 138 -~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 -PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI-THEMEVVKRICDRVAVME 215 (233)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999866435566665 455678889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=336.77 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2458999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... ..+. . ...+ ..+....++++++.+||++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~-~-----~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA-R-----ARRE-----------EREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc-c-----cccc-----------HHHHHHHHHHHHHHcCccchhhCC-----
Confidence 999999998764321100 0000 0 0000 000112356788999998766644
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|++ +|+.+++.++||++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLV-EHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999865 45665555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=318.56 Aligned_cols=207 Identities=30% Similarity=0.439 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (991)
+++|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||++++...+. +..+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45999999999999999999999999999999999999998 99999999999877653 5678999999888899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|-+.+++.-++.+...+ +...+++..|...++.+.+. +..
T Consensus 91 tv~eVV~mGr~p~~~g~~~~--------------------------------e~~~i~~~ala~~d~~~la~-----R~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPE--------------------------------EDERIAAQALAATDLSGLAG-----RDY 133 (259)
T ss_pred EHHHHHHhcccccccCCCch--------------------------------hhHHHHHHHHHHcChhhhhc-----cch
Confidence 99999999986553332100 11224566777888877664 445
Q ss_pred CCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+.|||||||||.+||.|+. ++++||||||||.||......+++..|++++. + ..|+.+.|+.+.+..+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 7899999999999999974 45699999999999999999999999999974 4 55666778999999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=330.94 Aligned_cols=199 Identities=30% Similarity=0.416 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 35799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+..+..+... . +....++++++.+||.+..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------D------------------------EIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99998754332100 0 01123466788999987766544 589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++ |...++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~s-H~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT-HDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764456666654 5667889999999999999999
Q ss_pred Eec
Q 001957 405 YQG 407 (991)
Q Consensus 405 ~~G 407 (991)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=380.00 Aligned_cols=206 Identities=27% Similarity=0.423 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.+||+||||||||||+++|+|++ |+ +|+|++||+++++... ++.++||+|++. +++.|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-LF~~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQ-LPHGT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCc-CCCcC
Confidence 4999999999999999999999999999999999999 87 9999999999987654 478999999765 55679
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|||.++.. ....+... ++....+ .+.. +-.|++..||.||+. ..
T Consensus 439 I~eNI~~g~~----~~~~eei~---------------------~al~~a~------l~~~--i~~lp~G~dT~vge~-G~ 484 (588)
T PRK11174 439 LRDNVLLGNP----DASDEQLQ---------------------QALENAW------VSEF--LPLLPQGLDTPIGDQ-AA 484 (588)
T ss_pred HHHHhhcCCC----CCCHHHHH---------------------HHHHHhC------HHHH--HHhcccccccccccC-CC
Confidence 9999999631 11111111 1111100 1111 335778899999975 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.||+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999874 467877777665 6678899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++++
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999999864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=334.66 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 35999999999999999999999999999999999999998 9999999998754332 2468999999989999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... . .....++++++.+||++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~----- 130 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------K------------------------EREEKLEELLEEFHITHLRKSK----- 130 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC-----
Confidence 999999998653321100 0 0112346688899998766654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|+.+++.+++|+|++|++
T Consensus 131 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLIT-DHNVRETLSITDRAYIIYE 208 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 45565555 5566789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.86 Aligned_cols=201 Identities=29% Similarity=0.393 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|+..+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999998 9999999998764 246799999998888889999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.++....+... . .....++.+++.+||.+..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998764332110 0 00123456888999987666544 589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~ 402 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV-THDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999999865445566655 556668889999999999 799
Q ss_pred EEEecCHH
Q 001957 403 IVYQGPRE 410 (991)
Q Consensus 403 iv~~G~~~ 410 (991)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=335.59 Aligned_cols=203 Identities=26% Similarity=0.370 Sum_probs=167.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.... .++.++|++|+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5999999999999999999999999999999999999 787 999999999875432 235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++ .+||+||+.++....+.... . .....++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------E------------------------ELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987643321000 0 0012345678899998766543
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . .|+|+ ++|..+++.++||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~-~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVI-VTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEE-EeccHHHHHHhCCEE
Confidence 20 468999999999999999999999999999999999999999999999865 3 45555 556677889999999
Q ss_pred EEecCCeEEEecCHHH
Q 001957 396 ILLSDGQIVYQGPREL 411 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (991)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=346.67 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875422 2367999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+.|.+++.+.... +....++++++.+||.+..|+.+ +
T Consensus 92 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~ 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQ----------------------------------LLKQRVEEMIELVGLRPEQHKKI-----G 132 (301)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHCCCchHhcCch-----h
Confidence 99999988765432100 01113466899999998877655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+++|++|||||||+|||+.++..+.+.|+++. .+.|+|+ ++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii-~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTIIL-STHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CCCEEEE-EcCCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999974 3555555 5667789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=332.69 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=162.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 5999999999999999999999999999999999999998 999999999875432 2357999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+..+..+... . .....++++++.+||++..+..
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 135 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------R------------------------DANERVSAALEKVGLEGKAHAL---- 135 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC----
Confidence 9999999998765432110 0 0112345678999998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+.+++.++||++++|+
T Consensus 136 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 136 -PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLV-ATHDINLVETYRHRTLTLS 212 (216)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEe
Confidence 458999999999999999999999999999999999999999999999864 4556555 5566778889999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.74 Aligned_cols=203 Identities=31% Similarity=0.446 Sum_probs=169.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++|+|||+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999998 99999999987542 12356999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..+..+.... +....++++++.+||.+..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 99999987654321100 00112456788999987776554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|..+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~-~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIIL-TTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEE-EcCCHHHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999753 455555 4566678889999999999999
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=351.28 Aligned_cols=250 Identities=21% Similarity=0.352 Sum_probs=202.5
Q ss_pred HHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCcccc
Q 001957 85 IDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRH 164 (991)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (991)
+|+.+.+.++++| +.+......+..++..|.|+|+++.++. .
T Consensus 509 mEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p---------------------------------~ 550 (790)
T KOG0056|consen 509 MENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP---------------------------------G 550 (790)
T ss_pred HHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------------C
Confidence 6777777777776 5554444555667899999999999752 2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+||||++.||+.+||+||||+||||++++|-++++.+ +|.|++||++++.. ..++.+|.||||. .+++-
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt-vLFNd 626 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDT-VLFND 626 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcc-eeecc
Confidence 45999999999999999999999999999999999999988 99999999998653 3457899999954 55677
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+..|++|+. +....|+..+. .+++ +-.-+++++++.++|+||++..
T Consensus 627 TI~yNIryak----~~AsneevyaA---AkAA--------------------------~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 627 TILYNIRYAK----PSASNEEVYAA---AKAA--------------------------QIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeeeheeecC----CCCChHHHHHH---HHHh--------------------------hHHHHHhcCchhhhhhhhhccc
Confidence 9999999874 22222221111 1111 1123588999999999998877
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+ |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|+|+.. |+-++.-.+|.|+++++|
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADLILVISNG 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccEEEEEeCC
Confidence 6 999999999999999999999999999999999999999999999985 34544443 345677789999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+|++.|.+++++.
T Consensus 749 ~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 749 RIVERGRHEELLK 761 (790)
T ss_pred eEeecCcHHHHHh
Confidence 9999999999974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=335.01 Aligned_cols=214 Identities=30% Similarity=0.416 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 35999999999999999999999999999999999999988 999999999876542 135789999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++...... ....+. +.. . ......++.+++.+||.+..++
T Consensus 91 ~~~tv~~~l~~~~~~~~~-----~~~~~~------~~~--~-------------~~~~~~~~~~l~~~~l~~~~~~---- 140 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS-----TWRSLF------GLF--P-------------KEEKQRALAALERVGLLDKAYQ---- 140 (241)
T ss_pred ccCcHHHHHHhhhcccch-----hhhhhc------ccC--c-------------HHHHHHHHHHHHHcCChhhhCC----
Confidence 999999999886431100 000000 000 0 0011234567889999766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+.+++.+++|++++|
T Consensus 141 -~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 141 -RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS-LHQVDLAREYADRIVGL 218 (241)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 4468999999999999999999999999999999999999999999999875445565555 56677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=341.02 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=175.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999999864322 35789999986 467889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+.+..+... .+....++++++.+||++..|.. +
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKERE-----P 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCC-----c
Confidence 99999998754332110 00112356789999998766644 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+++| ..+++ ..||+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH-~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH-DLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHH-HhCCEEEEEECC
Confidence 6899999999999999999999999999999999999999999999987644666666655 45566 589999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCPK 425 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (991)
+++..|+++++.. .++..|+.+|.
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 9999999987752 24444555443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=330.84 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998765432 35699999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (991)
||+||+.+.....+. . + ....++.+++.+ ++++..++.
T Consensus 91 t~~~~l~~~~~~~~~--~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~----- 129 (222)
T cd03224 91 TVEENLLLGAYARRR--A-----K-----------------------------RKARLERVYELFPRLKERRKQL----- 129 (222)
T ss_pred cHHHHHHHHhhhcCc--h-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCc-----
Confidence 999999987543210 0 0 001123455666 466555543
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++ +|+..++.+++|+|++|++
T Consensus 130 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLV-EQNARFALEIADRAYVLER 207 (222)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhccEEEEeeC
Confidence 468999999999999999999999999999999999999999999999865 45565555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=333.64 Aligned_cols=232 Identities=25% Similarity=0.344 Sum_probs=189.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-C-CCCeeeEEEECCeeCCCccc-------cceEEEEecC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~-~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (991)
...+++||||++++||+++|+|.|||||||+.++|.|+++ + ...++|+|.|+|.++-.+.. -+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33467999999998755432 2579999998
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+ .+.|.+||.+.+.-..+.+.... .+ ++....+.++|+.+||++..
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHHHHHHHHHHHHcCCCCHH
Confidence 4 67899999999987776432110 00 01123455689999998643
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
. +.+.++.+|||||||||.||.||+.+|++||.|||||+||...+.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33578999999999999999999999999999999999999999999999999987 45677777889999999999
Q ss_pred CeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 001957 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 438 (991)
|+|+||+.|+||+.|+.+++. ..|.+..+...+..+-+
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCcc
Confidence 999999999999999999873 45766666555555433
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=340.29 Aligned_cols=208 Identities=26% Similarity=0.337 Sum_probs=174.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999998 9999999998764321 24699999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++.+||+||+.+.....+... . .....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 88889999999998764332100 0 0011345678999998777655
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ +.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|++
T Consensus 158 ~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~-tH~~~~~~~~~d~v 231 (269)
T cd03294 158 P-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI-THDLDEALRLGDRI 231 (269)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEE
Confidence 4 57999999999999999999999999999999999999999999999875445666655 55667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=383.68 Aligned_cols=256 Identities=24% Similarity=0.373 Sum_probs=201.0
Q ss_pred hHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCC--ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.++..+.+++++++..+. +.. -+..+...| +.+|.|+|+++.|.
T Consensus 953 ka~~Aa~~iF~i~dr~~~-----i~~-~~~~~~~~~~~~G~I~~~~V~F~YP---------------------------- 998 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPT-----IDP-DSTSGGKLPNVKGDIEFRNVSFAYP---------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHhcCCCC-----CCC-CCCCCCccccceeEEEEeeeEeeCC----------------------------
Confidence 345556666666665542 111 012332233 56799999999873
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
++ +...||+|+|+.|++|+.+||+|||||||||.+.+|-++|+|. +|.|.+||+++++++. ++.+|.|.|+
T Consensus 999 --sR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 999 --TR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred --CC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccC
Confidence 22 3467999999999999999999999999999999999999998 9999999999998775 4789999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++-|+||||.|+.. .. ..+ |+.+..+. ++..--+.+|++.+||
T Consensus 1073 P~L-F~~TIrENI~YG~~--~v--s~~---eIi~Aak~--------------------------ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1073 PVL-FNGTIRENIAYGSE--EV--SEE---EIIEAAKL--------------------------ANAHNFISSLPQGYDT 1118 (1228)
T ss_pred chh-hcccHHHHHhccCC--CC--CHH---HHHHHHHH--------------------------hhhHHHHhcCcCcccC
Confidence 765 56799999999821 11 111 11111111 1222346789999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||++. .+||||||||++|||||++||+||+|||.||+||+++...+.+.|.+.. .++|+|+.. |+..+.+.+|.
T Consensus 1119 ~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1119 RVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNADV 1193 (1228)
T ss_pred ccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcCCE
Confidence 999655 5799999999999999999999999999999999999999999999964 356666554 45689999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|+++|+|+++|+|+++++
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999999985
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=338.88 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=173.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998865322 356999999853 56678
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+....+... ......++++++.+||.+..+.. +
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-----~ 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKP-----P 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCC-----h
Confidence 99999998754322110 00112346688999998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++ +|..+++.++||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~-tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVA-THDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865 45565554 56677888999999999999
Q ss_pred eEEEecCHHHHH--HHHHhcCCCCC
Q 001957 402 QIVYQGPRELVL--EFFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~--~~f~~~G~~~p 424 (991)
++++.|+++++. +.+...|+.+|
T Consensus 215 ~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 215 RVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred EEEEECCHHHhcCHHHHHHcCCCCC
Confidence 999999986542 22333444443
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=378.94 Aligned_cols=254 Identities=28% Similarity=0.395 Sum_probs=196.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+.....++|+.++.++.++ +.+.... ...+..+++|+|+++.++.
T Consensus 296 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~---------------------------- 340 (567)
T COG1132 296 QRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG---------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC----------------------------
Confidence 4556667777777776443 2221111 3345567999999998741
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
++.+|+|+|+.++|||.+||+||||||||||+++|.|+++|+ +|+|.+||+++++... ++.++||+|+.
T Consensus 341 -----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 341 -----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred -----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 245999999999999999999999999999999999999998 9999999999987654 57899999965
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+| +.||+|||.++..- ...+...+ ..+.++ .+. .+..|++.+||.
T Consensus 413 ~LF-~~TI~~NI~~g~~~----at~eei~~---a~k~a~------------------------~~d--~I~~lp~g~dt~ 458 (567)
T COG1132 413 LLF-SGTIRENIALGRPD----ATDEEIEE---ALKLAN------------------------AHE--FIANLPDGYDTI 458 (567)
T ss_pred eee-cccHHHHHhcCCCC----CCHHHHHH---HHHHhC------------------------hHH--HHHhCcccccce
Confidence 555 59999999997421 11111111 111110 111 234568899999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|| +....||||||||++||||++++|++|+||||||+||+.+...|.+.++++. +++|+++..|+ . .+...+|+|
T Consensus 459 vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHR-l-sti~~aD~I 533 (567)
T COG1132 459 VG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHR-L-STIKNADRI 533 (567)
T ss_pred ec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEecc-H-hHHHhCCEE
Confidence 99 4556799999999999999999999999999999999999999999999775 34677775444 3 455559999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|++++++.
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=344.75 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC-----------------------
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------------------- 221 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------------------- 221 (991)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 9999999876521
Q ss_pred ----ccccceEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhh
Q 001957 222 ----FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (991)
Q Consensus 222 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (991)
...++.++||+|++ ..++..||+||+.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01235789999984 45667899999999765432210 0011
Q ss_pred HHHHHHHHHcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 297 VITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..++++++.+||+ +..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 4555 44578999999999999999999999999999999999999999999999864 455
Q ss_pred eEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
|+|+ ++|..+++.++||+|++|++|++++.|+++++.
T Consensus 217 tiii-vtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIIL-VTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEE-EeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5554 566778899999999999999999999998875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=345.42 Aligned_cols=221 Identities=22% Similarity=0.397 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------------------ccc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQ 225 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------------------~~~ 225 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999998 99999999887532 123
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 226 RTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 226 ~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
+.++||+|++ ..++..||+||+.|+....+.. . .+....++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 6799999985 2344569999999875432110 0 001123456788
Q ss_pred HcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 305 VLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
.+||+ ...+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|
T Consensus 162 ~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiiv-tH 234 (320)
T PRK13631 162 KMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVI-TH 234 (320)
T ss_pred HcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ec
Confidence 99996 3444 44568999999999999999999999999999999999999999999999864 45565554 56
Q ss_pred CCchhHhhcCeEEEecCCeEEEecCHHHHH---HHHHhcCCCCCCCCCH
Q 001957 384 PAPETYDLFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGV 429 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ 429 (991)
..+++.++||+|++|++|++++.|+++++. ..+...|+.+|.....
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 283 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQV 283 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHHH
Confidence 677888999999999999999999998774 3344556665554333
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=327.95 Aligned_cols=198 Identities=26% Similarity=0.405 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999998 9999999998754 2356799999999888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+....++.... +....++++++.+||++..++. ++.|
T Consensus 89 e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKKE----------------------------------EARRRIDEWLERLELSEYANKR-----VEEL 129 (210)
T ss_pred HHHHHHHHHcCCChH----------------------------------HHHHHHHHHHHHcCChHHHhCc-----HhhC
Confidence 999987544321100 0112346678899998776654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|...++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVIL-STHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-ECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 4555555 456677888999999999999998
Q ss_pred Eec
Q 001957 405 YQG 407 (991)
Q Consensus 405 ~~G 407 (991)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=333.45 Aligned_cols=223 Identities=26% Similarity=0.351 Sum_probs=194.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+...-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++...+. ++.+++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3345789999999999999999999999999999999999999 9999999999876543 36799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++|+.||.||..|+...+|.... . .+....+.|+..||+...+
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~-------e---------------------------r~~~a~~~l~~VgL~~~~~-- 159 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA-------E---------------------------REERALEALELVGLEGYAD-- 159 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH-------H---------------------------HHHHHHHHHHHcCchhhhh--
Confidence 999999999999999999887531 1 1223466899999998887
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++-+..++| |+.++|+.+|++++.|||
T Consensus 160 ---~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rI 235 (386)
T COG4175 160 ---KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRI 235 (386)
T ss_pred ---cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceE
Confidence 5668999999999999999999999999999999999999999999999987755555 555678999999999999
Q ss_pred EEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 396 ILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
.+|.+|+||..|++++++. .|....+++|..++
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999973 57777777777665
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=330.29 Aligned_cols=195 Identities=29% Similarity=0.392 Sum_probs=161.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 45999999999999999999999999999999999999998 999999999876533 13579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.++....+... . .....++++++.+||++..++.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 137 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHY-- 137 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcC--
Confidence 999999999999765432110 0 0012346688999998766654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.| ...++. +||++++
T Consensus 138 ---~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~-~~d~v~~ 212 (218)
T cd03255 138 ---PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH-DPELAE-YADRIIE 212 (218)
T ss_pred ---hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHh-hhcEEEE
Confidence 46899999999999999999999999999999999999999999999987534566666655 455665 9999999
Q ss_pred ecCCeE
Q 001957 398 LSDGQI 403 (991)
Q Consensus 398 L~~G~i 403 (991)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=337.29 Aligned_cols=206 Identities=22% Similarity=0.338 Sum_probs=171.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4999999999999999999999999999999999999998 999999999876432 1356899999988889
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||.||+.+......... +. .....+..+++.+||.+..+..
T Consensus 98 ~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~gl~~~~~~~---- 140 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQLP---------AP------------------------LLHSTVMMKLEAVGLRGAAKLM---- 140 (269)
T ss_pred CCCHHHHHHHHHHHccCCC---------HH------------------------HHHHHHHHHHHHcCChhhhhCC----
Confidence 9999999998643210000 00 0011245678899998777654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++++|+
T Consensus 141 -~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 141 -PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV-SHDVPEVLSIADHAYIVA 218 (269)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhhCEEEEEE
Confidence 458999999999999999999999999999999999999999999999875435565555 566778999999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=330.36 Aligned_cols=203 Identities=34% Similarity=0.544 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 77 999999999876433457799999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHH-HHHHcCCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (991)
||+||+.|+....+..... ... .....+. .++.+++.+..++ .
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGN-----L 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhcc-----c
Confidence 9999999876543211000 000 0011233 6788888766554 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++|++..++.++||++++|++
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 568999999999999999999999999999999999999999999999865 4677777777665789999999999999
Q ss_pred CeEEEec
Q 001957 401 GQIVYQG 407 (991)
Q Consensus 401 G~iv~~G 407 (991)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=333.23 Aligned_cols=206 Identities=28% Similarity=0.402 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 35999999999999999999999999999999999999998 9999999998764322 35789999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc--cccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (991)
||+||+.+..+..+... . .....+.++++.+||.+ ..+ +
T Consensus 91 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~l~l~~~~~~~-----~ 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------E------------------------KIRERADELLALVGLDPAEFAD-----R 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcHHHHh-----c
Confidence 99999998754332100 0 00113456788999975 444 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++ |+..++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s-H~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT-HDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhCCEEEEEE
Confidence 45689999999999999999999999999999999999999999999998764355655554 55668899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=325.20 Aligned_cols=179 Identities=45% Similarity=0.784 Sum_probs=157.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHI 238 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~ 238 (991)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|+++ |+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccC
Confidence 3569999999999999999999999999999999999998 66 999999999876532 246799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++.+.. .+
T Consensus 96 ~~~tv~~~l~~~~~~~--------------------------------------------------------------~~ 113 (202)
T cd03233 96 PTLTVRETLDFALRCK--------------------------------------------------------------GN 113 (202)
T ss_pred CCCcHHHHHhhhhhhc--------------------------------------------------------------cc
Confidence 9999999998764210 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++||+.+++.+++|++++|
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 34467999999999999999999999999999999999999999999999876446678888888888999999999999
Q ss_pred cCCeEEEec
Q 001957 399 SDGQIVYQG 407 (991)
Q Consensus 399 ~~G~iv~~G 407 (991)
++|++++.|
T Consensus 194 ~~G~i~~~g 202 (202)
T cd03233 194 YEGRQIYYG 202 (202)
T ss_pred ECCEEEecC
Confidence 999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=345.64 Aligned_cols=208 Identities=22% Similarity=0.235 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
..+|+|||++|++||+++|+|+||||||||+++|+|+++++ +|+|.++|.++.... .++.++||+|+. .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999998 999999999986543 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
++|.+||.|++.+..+....+.. +. +....++++++.+||. ...+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------~~------------------------~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------RQ------------------------EVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------HH------------------------HHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999987653311000 00 0112345678999994 3333
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+. +|+.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~-til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL-SLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEE
Confidence 566799999999999999999999999999999999999999999999998664344 4555677888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=352.17 Aligned_cols=207 Identities=25% Similarity=0.324 Sum_probs=175.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+||.++..... ++.++||+|+..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345899999999999999999999999999999999999998 9999999999865432 247999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.|.....+.... +....++++++.+||.+..+.
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~----------------------------------~~~~~~~e~L~~~gL~~~~~~-- 160 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAE----------------------------------ERREKALDALRQVGLENYAHS-- 160 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCChhhhc--
Confidence 99999999999998654332100 001234668999999876664
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|++ +|..+++.+++|+|+
T Consensus 161 ---~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIiv-THd~~~~~~~~Dri~ 236 (400)
T PRK10070 161 ---YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI-SHDLDEAMRIGDRIA 236 (400)
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEE-ECCHHHHHHhCCEEE
Confidence 4568999999999999999999999999999999999999999999999865445565554 567788999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999998774
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=329.42 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++..... ++.++|++|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 2469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~-- 142 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------A------------------------EINSRALEMLAAVGLEHRANHR-- 142 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 899999999998754321100 0 0112345688999998766654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++. |+.+++.. +|++++
T Consensus 143 ---~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s-H~~~~~~~-~~~~~~ 217 (233)
T PRK11629 143 ---PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT-HDLQLAKR-MSRQLE 217 (233)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHh-hCEEEE
Confidence 4689999999999999999999999999999999999999999999998653456666655 45556655 589999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=329.73 Aligned_cols=206 Identities=26% Similarity=0.370 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc--cceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .+.++|++|+..+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35999999999999999999999999999999999999998 9999999998754322 257899999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... . +....++++++.+||++..++.+ .
T Consensus 91 ~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~ 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------A------------------------EARERIAALLARLGLAERADDKV-----R 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 9999988654322100 0 00113456788999987766544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWAT-HLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cChhhHh-hCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999998754466666655 4555665 499999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=352.85 Aligned_cols=209 Identities=27% Similarity=0.420 Sum_probs=174.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+||.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45999999999999999999999999999999999999998 9999999998865432 46799999999888999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|++.++...+.... ..+ .......++++++.+||.+..|+. +
T Consensus 93 tv~e~v~~~~~~~~~~~--~~~----------------------------~~~~~~~v~~~le~vgl~~~~~~~-----~ 137 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRF--DTW----------------------------TETDRAAVERAMERTGVAQFADRP-----V 137 (402)
T ss_pred CHHHHHHhccchhcccc--cCC----------------------------CHHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 99999998643210000 000 000122467789999998777654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||.||++|+++|++|||||||+|||+.++.++++.|+++++ .+.|+|+ ++|..+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIi-vsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVA-AIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999875 4556555 567788999999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=341.36 Aligned_cols=206 Identities=21% Similarity=0.315 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 99999999988542 1245799999985 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++..||.||+.|+....+... .+....++++++.+||. +..++
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ- 141 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC-
Confidence 3444699999998754322110 00112356688999996 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|..+++.+++|+|
T Consensus 142 ----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~-vtH~~~~~~~~~dri 216 (286)
T PRK13646 142 ----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL-VSHDMNEVARYADEV 216 (286)
T ss_pred ----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEE
Confidence 456899999999999999999999999999999999999999999999986544555555 456677889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998765
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=344.72 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=174.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC--
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d-- 235 (991)
..+|+||||+|++||+++|+|+||||||||+++|+|++++....+|+|.|+|.++..... .+.++||+|+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742238999999999865432 14799999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+.+.+||.+++.+.....+.... . +....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------~------------------------~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------A------------------------EAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------H------------------------HHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999876543211000 0 011234567889999764332
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ +.++++|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.++.+ ++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN-TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhCCEE
Confidence 2 367889999999999999999999999999999999999999999999999876434 45555667788889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998885
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=325.56 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-cccceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35999999999999999999999999999999999999998 99999999987542 123578999999888999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. ....++++++.++|.+..++. +..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKK-----VKG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhh-----Hhh
Confidence 9999987542210 001245678889998776654 457
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 45665555 5667788899999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=315.89 Aligned_cols=210 Identities=21% Similarity=0.365 Sum_probs=181.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+++++++|||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++.++.. .-+||.+|+...|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999999 99999999999887653 3579999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
-.|||+|||......+.... .+ .+.+...+.+|+.|+|.|++|..
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------~~------------------------~~~~~~l~~LL~ef~i~hlr~~~--- 136 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------KK------------------------AERKEELDALLEEFHITHLRDSK--- 136 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------hH------------------------HHHHHHHHHHHHHhchHHHhcCc---
Confidence 99999999998876542110 00 11223467899999999999865
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
...||||||+|+.|||||+.+|+.++||||++|.||-+-.+|.+.++.+.. .|.-++| +-|...|+..+|||.+++
T Consensus 137 --a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi 212 (243)
T COG1137 137 --AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYII 212 (243)
T ss_pred --ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEE
Confidence 357999999999999999999999999999999999999999999999865 4555555 466778999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=333.65 Aligned_cols=213 Identities=26% Similarity=0.347 Sum_probs=170.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|+..++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35999999999999999999999999999999999999998 999999999875432 245699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....... ...+.. .. .......++++++.+||.+..+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~-----~~~~~~------~~---------------~~~~~~~~~~~l~~~~l~~~~~~---- 141 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPT-----WRSLLG------RF---------------SEEDKERALSALERVGLADKAYQ---- 141 (243)
T ss_pred ccccHHHHHhhcccccccc-----hhhhhc------cc---------------cHHHHHHHHHHHHHcCcHhhhcC----
Confidence 9999999998753211000 000000 00 00011234567889999876654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++++|
T Consensus 142 -~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 142 -RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN-LHQVDLAKKYADRIVGL 219 (243)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEE
Confidence 4468999999999999999999999999999999999999999999999865445555554 56677888999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=326.80 Aligned_cols=198 Identities=30% Similarity=0.443 Sum_probs=165.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 99999999987642 123679999999988888999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+... . +....++++++.+||++..+.. ++.
T Consensus 96 ~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------D------------------------ELTARLEELADRLGMEELLDRR-----VGG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhhh-----hhh
Confidence 999998654332110 0 0112346688999998776654 458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|...++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFS-THIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 45565555 5566788999999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=336.93 Aligned_cols=215 Identities=27% Similarity=0.361 Sum_probs=174.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+. ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999999865332 35799999986 367789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++....+... .+....++++++.+||.+..++. +
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 138 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNRE-----P 138 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC-----c
Confidence 99999998754322100 00112356788999998776654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+++| ..+++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH-~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH-DLDEAA-QADRVIVMNKG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEec-CHHHHH-cCCEEEEEECC
Confidence 5899999999999999999999999999999999999999999999987644566666655 455665 59999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (991)
++++.|+.+++.. .+...|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 217 EILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred EEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 9999999987753 3444455444
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=329.26 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999999998 99999999987642 12357899999988888
Q ss_pred CCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.++.. ..+... . +....++++++.+||++..|..
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~--- 133 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASK----------E------------------------EAEKQARELLAKVGLAERAHHY--- 133 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChHHHhcC---
Confidence 9999999988642 111100 0 0112345688899998766644
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .++|+|++ +|+.+++.++||++++|
T Consensus 134 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 134 --PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIV-THEIGFAEKVASRLIFI 209 (240)
T ss_pred --hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999864 45665555 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=332.01 Aligned_cols=204 Identities=27% Similarity=0.387 Sum_probs=169.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----------cccceEEEEecC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----------~~~~~~~yv~Q~ 234 (991)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999999998 99999999987532 123578999999
Q ss_pred CCCCCCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
..+++.+||+||+.++... ++.. . ......++++++.+||.+..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEP-K---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 8888899999999886431 1100 0 001123456788999987665
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
+ .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|
T Consensus 140 ~-----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-tH~~~~~~~~~d 212 (250)
T PRK11264 140 S-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIV-THEMSFARDVAD 212 (250)
T ss_pred C-----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcC
Confidence 4 4468999999999999999999999999999999999999999999999865 45565554 566778889999
Q ss_pred eEEEecCCeEEEecCHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (991)
++++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=342.91 Aligned_cols=213 Identities=21% Similarity=0.244 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCeeCCCccc-------cceEEEEecCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~-~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (991)
..+|+||||+|++||+++|+|+||||||||+++|+|++++... .+|+|.++|+++..... .+.++||+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4699999999999999999999999999999999999874221 28999999999865432 13699999986
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+.|.+||.+++....+...... + .+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------~------------------------~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------K------------------------KTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 47889999999877654321000 0 001123567899999975321
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+-+.++++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++.+.| ++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~t-il~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMA-LVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCE
Confidence 1235678999999999999999999999999999999999999999999999987644554 55556778889999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=325.16 Aligned_cols=192 Identities=26% Similarity=0.350 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC-CCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 45999999999999999999999999999999999999998 9999999998754333467999999864 3567899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. ....++++++.+||.+..++. +..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERH-----PLS 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCC-----chh
Confidence 9999886432100 001245678999998776654 458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVI-THDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 45666665 4566688899999999999997
Q ss_pred E
Q 001957 404 V 404 (991)
Q Consensus 404 v 404 (991)
|
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=378.53 Aligned_cols=252 Identities=23% Similarity=0.295 Sum_probs=190.9
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++.+.+.+.- + +....+.....++|+|+++.+..
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~-----~--~~~~~~~~~~~I~~~nvsf~Y~~---------------------------- 463 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVD-----E--AKTDPGKLSGAIEVDRVTFRYRP---------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHhcCCcccc-----c--CcCCCCCCCceEEEEEEEEEcCC----------------------------
Confidence 445556677776665544310 0 00000111346999999998731
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|++|+|||.+||+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++
T Consensus 464 ----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 464 ----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred ----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 1134999999999999999999999999999999999999998 9999999999987654 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+ ++.|++|||.++.. ...+... +..+.+++ ++. +..|++..||.
T Consensus 537 ~l-f~gTI~eNi~~~~~-----~~~e~i~---~al~~a~l------------------------~~~--i~~lp~G~dt~ 581 (686)
T TIGR03797 537 RL-MSGSIFENIAGGAP-----LTLDEAW---EAARMAGL------------------------AED--IRAMPMGMHTV 581 (686)
T ss_pred cc-CcccHHHHHhcCCC-----CCHHHHH---HHHHHcCc------------------------HHH--HHhcccccccc
Confidence 55 56799999998632 1111111 11111110 111 23467789999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+. ...||||||||++|||||+++|++|+||||||+||+.++.++.+.|+++ ++|+|+..|++ ++.+.+|+|
T Consensus 582 ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~I 654 (686)
T TIGR03797 582 ISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRI 654 (686)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEE
Confidence 9965 4679999999999999999999999999999999999999999999874 35777766554 667889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++++
T Consensus 655 ivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 655 YVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.03 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=170.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC--c---cccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|+.. .++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12357999999863 356
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||+||+.+.....+... . .....++++++.+||.+..|+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~----- 137 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------D------------------------EVRKRVDNALKRTGIEHLKDK----- 137 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhhC-----
Confidence 7899999998754322110 0 011235678899999876664
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.++||++++|+
T Consensus 138 ~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv-sH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-THDIDIVPLYCDNVFVMK 216 (283)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999876445665555 566778889999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=325.32 Aligned_cols=196 Identities=24% Similarity=0.348 Sum_probs=160.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998765332 1469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+......... . +....+.++++.+||++..+..
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 138 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------K------------------------EAKERAYEMLEKVGLEHRINHR-- 138 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC--
Confidence 889999999998654321100 0 0011245678899998766644
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++| ...++. .+|++++
T Consensus 139 ---~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH-~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 139 ---PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH-DLELAK-KLDRVLE 213 (221)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHh-hcCEEEE
Confidence 46899999999999999999999999999999999999999999999987544666666655 455664 5799999
Q ss_pred ecCCeEE
Q 001957 398 LSDGQIV 404 (991)
Q Consensus 398 L~~G~iv 404 (991)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=324.42 Aligned_cols=196 Identities=30% Similarity=0.453 Sum_probs=164.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++| +++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 5999999999999 99999999999999999999999998 999999998875432 24678999999988999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+... . +....++++++.+||++..|+.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------K------------------------EVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 999998754332100 0 00123456788999987766544 57
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.| |+.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~t-ii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRI-VILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCE-EEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 445 44456677788899999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=327.82 Aligned_cols=233 Identities=24% Similarity=0.321 Sum_probs=180.8
Q ss_pred EEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 001957 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (991)
Q Consensus 119 v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~L 198 (991)
|+.+|++.++.... ..+++.+.+.+.+ ..+...+.+|+|+|+.|++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35678888876532 2334444333322 1223446799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEe-cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCC
Q 001957 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (991)
Q Consensus 199 aG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (991)
+|+++|+ +|+|.++|+++... ..++.++|++ |++.+++.+||+|++.+.....+....
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------- 128 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA---------------- 128 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHH----------------
Confidence 9999998 99999999876432 1245789998 445677899999999987644321100
Q ss_pred CCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCC
Q 001957 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (991)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD 355 (991)
+....++.+++.+||++..|+.+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 129 ------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 129 ------------------RFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred ------------------HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 00112456788899988887665 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 356 ~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|.+|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999876445566655 55667889999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.41 Aligned_cols=200 Identities=26% Similarity=0.362 Sum_probs=166.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... .+.++|++|+..+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 5999999999999999999999999999999999999998 99999999987642 345899999988888999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.....+... . .....++++++.+||.+..++. +..||
T Consensus 90 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------M------------------------QRLEIAHQMLKKVGLEGAEKRY-----IWQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhhCC-----hhhCC
Confidence 9988654322100 0 0011346688999998766644 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCeE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~i 403 (991)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++ +|+..++.++||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI-THDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCCcEE
Confidence 9999999999999999999999999999999999999999999865445565554 567778999999999998 5999
Q ss_pred EEecCHH
Q 001957 404 VYQGPRE 410 (991)
Q Consensus 404 v~~G~~~ 410 (991)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=333.08 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999998 999999999886432 2457899999863 6778
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... .+....++++++.+||.+..|+.
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 139 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKE----- 139 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCC-----
Confidence 999999998654221100 00112356688999998777654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|++.|++ +++. .+|++++|++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEAI-LADKVIVFSE 217 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHHh-hCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999998753346666666554 4554 7999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=346.95 Aligned_cols=208 Identities=25% Similarity=0.293 Sum_probs=175.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe----eCCCccc-------cceEEEE
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~----~~~~~~~-------~~~~~yv 231 (991)
+...+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3332211 2469999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
+|+..+++.+||+||+.|+...++.... +....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~----------------------------------~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEA----------------------------------ERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchh
Confidence 9999999999999999998654432110 011234668999999877
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.|.. +..|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+.+++.++
T Consensus 158 ~~~~-----~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~-iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKK-----PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF-VSHDLDEALKI 231 (382)
T ss_pred hcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHh
Confidence 7654 45799999999999999999999999999999999999999999999987644555555 45677899999
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=326.33 Aligned_cols=202 Identities=25% Similarity=0.325 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 35999999999999999999999999999999999999998 9999999998764332 3568999999988999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC-CcccccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (991)
+||+||+.++....+.. . ....+.+++.++ +.+..| .
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~-----~ 127 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLG-----R 127 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhh-----C
Confidence 99999999875432110 0 001234555565 444444 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|+
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVME 206 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865335565555 556678889999999999
Q ss_pred CCeEEEecCHHHH
Q 001957 400 DGQIVYQGPRELV 412 (991)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (991)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=339.56 Aligned_cols=207 Identities=19% Similarity=0.217 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+|||++|++||+++|+|+||||||||+++|+|+++++ +|+|.++|+++.... .++.++||+|+. .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999987 999999999986542 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
+.+.+||.+++.+..+...... +. +....+.++|+.+||+. .++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~gL~~~~~~-- 149 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------AA------------------------ERREKALAMMAKVGLRPEHYD-- 149 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------HH------------------------HHHHHHHHHHHHCCCChHHhc--
Confidence 7889999999987654321000 00 01123567899999963 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+. +|+.++|+...+.+++|+|
T Consensus 150 ---~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 ---RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL-SYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEE
Confidence 456789999999999999999999999999999999999999999999998764444 4555677888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=323.09 Aligned_cols=195 Identities=27% Similarity=0.399 Sum_probs=162.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999998 999999999876432 235799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 133 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------R------------------------EIRKRVPAALELVGLSHKHRAL--- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCC---
Confidence 99999999998764332100 0 0011345678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++++|
T Consensus 134 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiiv-tH~~~~~~~~~d~i~~l 209 (214)
T cd03292 134 --PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVA-THAKELVDTTRHRVIAL 209 (214)
T ss_pred --hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999865 45565555 55667888899999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=324.50 Aligned_cols=201 Identities=27% Similarity=0.336 Sum_probs=162.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 237 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+. .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999886533 235799999987 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
++.+||+||+.+.....+..... + ......+++++.++|. ...+.
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~l~~~~l~~~~~~~-- 141 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK---------E-----------------------ARKEAVLLLLVGVGLPEEVLNR-- 141 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH---------H-----------------------HHHHHHHHHHHHCCCChhHhhC--
Confidence 67899999999875433211000 0 0001124567888885 44444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|+
T Consensus 142 ---~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~ 217 (228)
T cd03257 142 ---YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-THDLGVVAKIADRVA 217 (228)
T ss_pred ---CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEE
Confidence 4468999999999999999999999999999999999999999999999875335666665 456678888999999
Q ss_pred EecCCeEEEec
Q 001957 397 LLSDGQIVYQG 407 (991)
Q Consensus 397 lL~~G~iv~~G 407 (991)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=371.36 Aligned_cols=208 Identities=24% Similarity=0.376 Sum_probs=167.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+| +.|
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~T 432 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDT 432 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceee-cch
Confidence 4999999999999999999999999999999999999998 9999999999876543 47899999976655 589
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++..- ....+.+.++ .+..+ .++. .-.|++..||.+|+. ..
T Consensus 433 i~~Ni~~~~~~---~~~~~~i~~a---l~~~~------------------------l~~~--i~~lp~Gldt~ig~~-g~ 479 (582)
T PRK11176 433 IANNIAYARTE---QYSREQIEEA---ARMAY------------------------AMDF--INKMDNGLDTVIGEN-GV 479 (582)
T ss_pred HHHHHhcCCCC---CCCHHHHHHH---HHHhC------------------------cHHH--HHhcccccCceeCCC-CC
Confidence 99999886310 0011111111 00000 1111 223678889999965 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGE 555 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999864 356777766554 6778899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 556 i~e~g~~~~l~~ 567 (582)
T PRK11176 556 IVERGTHAELLA 567 (582)
T ss_pred EEEeCCHHHHHh
Confidence 999999998863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.88 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=164.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .++.++|++|+..+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999987643 2467999999988888899999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.... . . ...++.+++.+||.+..+.. +..||
T Consensus 101 nl~~~~~~-----------~-~----------------------------~~~~~~~l~~~gl~~~~~~~-----~~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----------Q-W----------------------------RDAALQALAAVGLADRANEW-----PAALS 135 (257)
T ss_pred HHHhcccc-----------h-H----------------------------HHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 99885310 0 0 01234578899998766544 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++ +|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviiv-sHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV-THDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999865445665555 566678889999999999999999
Q ss_pred ecCHH
Q 001957 406 QGPRE 410 (991)
Q Consensus 406 ~G~~~ 410 (991)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=331.65 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=170.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2356899999863 45578
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.+.....+... .+....++++++.+||.+..++. +
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRV-----P 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCC-----c
Confidence 99999988654322110 00112356788999998776655 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~-tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS-THQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999876435555555 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=349.15 Aligned_cols=208 Identities=26% Similarity=0.386 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
.++|+|+|+++++||-+||+|+||||||||+++|+|-++|+ +|+|++||.++..... ++.+++++| ..|++.-
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc-chHHHHH
Confidence 35999999999999999999999999999999999999999 9999999999877655 357889999 6788899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+|+||.++.. ....|.+.++-++ .+. ++. ..+.++..||.+|+ ..
T Consensus 427 Tlr~NL~lA~~----~AsDEel~~aL~q---------------------vgL------~~l--~~~~p~gl~t~lge-~G 472 (573)
T COG4987 427 TLRDNLRLANP----DASDEELWAALQQ---------------------VGL------EKL--LESAPDGLNTWLGE-GG 472 (573)
T ss_pred HHHHHHhhcCC----CCCHHHHHHHHHH---------------------cCH------HHH--HHhChhhhhchhcc-CC
Confidence 99999998742 1111211111110 010 111 22345678899985 56
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++|||+|++++++++|||||.|||+.|..++++.|.+-+ +++|+++.+||- .-.+.||+|++|++|
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL--~~le~~drIivl~~G 548 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRL--RGLERMDRIIVLDNG 548 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccc--ccHhhcCEEEEEECC
Confidence 7799999999999999999999999999999999999999999998855 577887776553 335679999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|.+++++.
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=376.46 Aligned_cols=258 Identities=26% Similarity=0.391 Sum_probs=195.4
Q ss_pred HHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.++....++|+.++++.+++.- ..-.....+.....++|+|+++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~-----~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERP-----EGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----CCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 3456677777777776654310 00000001111346999999998732
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
..+.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1134899999999999999999999999999999999999998 9999999999987654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++.|++|||.++.. ....+ ...++....+ .+.. +..|++..||
T Consensus 548 ~~l-f~~TI~eNi~~~~~----~~~~~---------------------~i~~a~~~~~------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRL-FYGTLRDNIALGAP----YADDE---------------------EILRAAELAG------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhh-hhhhHHHHHhCCCC----CCCHH---------------------HHHHHHHHcC------hHHH--HHhCcccccc
Confidence 755 45799999998631 11111 1111111111 1111 2357788999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.+...|.+.|+++. .++|+|+..|++ ++.+.||+
T Consensus 594 ~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~ 668 (694)
T TIGR03375 594 QIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDR 668 (694)
T ss_pred eecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCE
Confidence 99965 56799999999999999999999999999999999999999999999875 357777776654 56789999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=328.88 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=169.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----------------ccceEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----------------~~~~~~ 229 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 5999999999999999999999999999999999999998 999999999875321 245799
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
|++|+..+++.+||.||+.++... .+... ......++++++.+||
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 999998889999999999886421 11100 0001134567889999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..+. .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++
T Consensus 137 ~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~ 210 (252)
T TIGR03005 137 ADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV-THEMGFA 210 (252)
T ss_pred hhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHH
Confidence 876654 4568999999999999999999999999999999999999999999999876435555555 5566788
Q ss_pred HhhcCeEEEecCCeEEEecCHHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
..++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=327.16 Aligned_cols=206 Identities=19% Similarity=0.332 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35999999999999999999999999999999999999998 9999999998865332 3569999999988899
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+..+....... . +....++++++.+||++..+. .
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------E------------------------QREDRANELMEEFHIEHLRDS-----M 134 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------H------------------------HHHHHHHHHHHHcCCHHHhhc-----c
Confidence 9999999886432210000 0 011234567889999766554 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |...++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~s-H~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITD-HNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEE-cCHHHHHHhcCEEEEEeC
Confidence 568999999999999999999999999999999999999999999998764 466666654 566789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=349.81 Aligned_cols=225 Identities=28% Similarity=0.402 Sum_probs=182.1
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
.|.++++.+||++.++. .+++++|+|+++++|+.++|+|+|||||||
T Consensus 316 ~~~~ei~~~~l~~~y~~---------------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 316 EPPIEISLENLSFRYPD---------------------------------GKPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred CCCceeeecceEEecCC---------------------------------CCcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 35788888899988642 125899999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHH
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 270 (991)
|+++|+|+++|+ +|+|++||.+..+.. +++.++||+|++. ++..|+||||.++..- ...+...+..++
T Consensus 363 Ll~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~-lf~gTireNi~l~~~~----~s~e~i~~al~~- 433 (559)
T COG4988 363 LLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPY-LFAGTIRENILLARPD----ASDEEIIAALDQ- 433 (559)
T ss_pred HHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCc-cccccHHHHhhccCCc----CCHHHHHHHHHH-
Confidence 999999999998 999999999987765 4689999999764 5668999999997421 111111111000
Q ss_pred HHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCC
Q 001957 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (991)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEP 350 (991)
..+.+.+.-+...||.+|+ ..++|||||+|||++||||+.+++++++|||
T Consensus 434 -----------------------------a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 434 -----------------------------AGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred -----------------------------hcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 1122333336688999995 5678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 351 TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|++||.++...|++.|.++++ ++|+++..|+ .....-+|+|++|++|+++++|.++++.+
T Consensus 484 TA~LD~etE~~i~~~l~~l~~--~ktvl~itHr--l~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 484 TAHLDAETEQIILQALQELAK--QKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred ccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcC--hHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999875 4677776543 46777899999999999999999999853
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=326.59 Aligned_cols=202 Identities=25% Similarity=0.382 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998765432 35699999998889899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (991)
||+||+.++..... . + +. ...++.+++.+ +|.+..++ .
T Consensus 96 tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~-----~ 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQ-----R 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhC-----c
Confidence 99999988642110 0 0 00 00123345555 35544443 3
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLV-EQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHhhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999865 46666665 5667789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999998774
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=327.82 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=164.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++||+++|+|||||||||||++|+|+++|+. ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998620 1289999999987421 1245799999987776
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
.+||+||+.|+....+.... ......++..++.++|. +..|+
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 49999999987543221000 00011244567777763 33443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|+ ++|...++.+++|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii-~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ESYTIII-VTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cCCEEEE-EeCCHHHHHHhCCE
Confidence 456899999999999999999999999999999999999999999999984 3455555 55667788999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=321.35 Aligned_cols=194 Identities=28% Similarity=0.415 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999988 999999999886532 235789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....+... ......++++++.+||++..++.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 134 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAF--- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC---
Confidence 89999999998754322100 00012345678899998665544
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++++|
T Consensus 135 --~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 135 --PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVA-THDLSLVDRVAHRVIIL 210 (214)
T ss_pred --hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEEEEe
Confidence 458999999999999999999999999999999999999999999999764 45565555 55667899999999999
Q ss_pred cCCe
Q 001957 399 SDGQ 402 (991)
Q Consensus 399 ~~G~ 402 (991)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=333.05 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCC-CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999886421 2467999999864 344
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||.|++.|+....+... . +....++++++.+||.+..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------E------------------------EIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------H------------------------HHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322110 0 01123567889999987777554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.| ...++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH-~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH-YMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-ChHHHhc-CCEEEEEE
Confidence 6899999999999999999999999999999999999999999999986544666666654 5556655 99999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=329.03 Aligned_cols=206 Identities=31% Similarity=0.482 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999998 9999999998754322 35689999998888899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.+.....+... . .....++.+++.+||.+..|+. +
T Consensus 92 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------A------------------------EDDALVAAALAQVDLAHLAGRD-----Y 132 (258)
T ss_pred CHHHHHHhhhcccCCCc----------H------------------------HHHHHHHHHHHHcCCHhHhcCC-----c
Confidence 99999998643211100 0 0011245678899998766654 4
Q ss_pred CCCChhHhHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+..++.++||+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV-LHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhcCEE
Confidence 589999999999999999 59999999999999999999999999999874345665555 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=326.40 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=167.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999763 22389999999987542 1236799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
+ +||+||+.+....++.... . +....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------K------------------------ELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 9999999987543321000 0 0011345678899997 44443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|...++.+++|+
T Consensus 141 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-vsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 -----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVI-VTHNMQQAARISDR 212 (247)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEE-EecCHHHHHHhCCE
Confidence 4568999999999999999999999999999999999999999999999864 355555 45667789999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=367.95 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DT 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-ch
Confidence 4999999999999999999999999999999999999998 9999999999876643 578999999776655 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. . +.+. +.+..+..+ .++.++ .|++..||.+|+. ..
T Consensus 431 i~~NI~~~~~---~--~d~~---i~~a~~~~g------------------------l~~~i~--~lp~Gldt~i~e~-g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--SEEQ---VWQALETVQ------------------------LAELAR--SLPDGLYTPLGEQ-GN 475 (592)
T ss_pred HHHHHHhCCC---C--CHHH---HHHHHHHcC------------------------cHHHHH--hccccccccccCC-CC
Confidence 9999998631 1 1111 111111110 111122 3677889999864 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999875 357777777665 6677899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999863
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=323.42 Aligned_cols=205 Identities=28% Similarity=0.334 Sum_probs=172.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|+...++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 5999999999999999999999999999999999999998 999999999886533 246799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.... .....++.+++.+||.+..++. +..|
T Consensus 91 ~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLPKA----------------------------------EIKERVAEALDLVQLEGYANRK-----PSQL 131 (232)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 999987644321100 0011345688899998777654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.| ...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh-~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH-DQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987534667776655 556788999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=326.26 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ ++ +|+|.++|+++... ..++.++|++|+.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 49999999999999999999999999999999999864 35 89999999987531 1235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++....+..... .....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDKA---------------------------------YLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7777 59999999875433211000 0011244567788885422222
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~-tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--ARYTIIIV-THNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCeEEEE-EecHHHHHHhCCEE
Confidence 2 24567899999999999999999999999999999999999999999999984 25555554 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=328.90 Aligned_cols=215 Identities=22% Similarity=0.301 Sum_probs=173.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2457899999864 68889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||++|+.|.....+... ......++.+++.+||.+..|+. +
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYE-----P 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----c
Confidence 99999988754322100 00011345678899998766644 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~-~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD-LSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-chHHhc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865446676666554 556665 9999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (991)
++++.|+++++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999887642 3334444444
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=366.75 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|++||.++.+... ++.++||+|+..+ ++.|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSAT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchh-hccc
Confidence 4899999999999999999999999999999999999998 9999999999887653 4679999997655 4579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC------cccccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL------DVCADTMV 316 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (991)
++||+.++.. ....+. +.+.++..++ ++.+||.+
T Consensus 430 i~~Ni~~~~~----~~~~~~------------------------------------i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAP----NASDEA------------------------------------LIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCC----ccCHHH------------------------------------HHHHHHHcCCHHHHcCccccCchh
Confidence 9999998641 111111 1112222222 67789999
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|+. ...||||||||++|||+|+++|++|+|||||++||+.++..|.+.|+++. .++|+|++.|++ +....||+|+
T Consensus 470 ge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~i~ 544 (574)
T PRK11160 470 GEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDRIC 544 (574)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCEEE
Confidence 964 56799999999999999999999999999999999999999999999874 467877777665 3456799999
Q ss_pred EecCCeEEEecCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++++.|+++++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=322.05 Aligned_cols=197 Identities=27% Similarity=0.333 Sum_probs=162.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 4999999999999999999999999999999999999998 9999999998865432 24699999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||.||+.+.....+... . +....++++++.+||.+..+..
T Consensus 101 ~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 143 (228)
T PRK10584 101 PTLNALENVELPALLRGESS----------R------------------------QSRNGAKALLEQLGLGKRLDHL--- 143 (228)
T ss_pred CCcCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC---
Confidence 99999999998654321100 0 0112346678999998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++ +.+|++++|
T Consensus 144 --~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~-~~~d~i~~l 219 (228)
T PRK10584 144 --PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD-LQLA-ARCDRRLRL 219 (228)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865446666666554 4466 559999999
Q ss_pred cCCeEEEe
Q 001957 399 SDGQIVYQ 406 (991)
Q Consensus 399 ~~G~iv~~ 406 (991)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=331.74 Aligned_cols=207 Identities=25% Similarity=0.320 Sum_probs=169.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+...+|+|.++|.++.... .++.++|++|+.. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999887111399999999886432 2357899999864 67789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|..+..+... .+....++.+++.+||.+..++ .+
T Consensus 101 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~ 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVPR----------------------------------PEMIKIVRDVLADVGMLDYIDS-----EP 141 (282)
T ss_pred CHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcC-----Cc
Confidence 99999998654322100 0011235667899999876654 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|+ .+++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-IDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999876446676666554 5566 579999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=376.41 Aligned_cols=256 Identities=24% Similarity=0.296 Sum_probs=192.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++.+..++|+.++.+.++|.- +..+....+....+++|+|+++.++.
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~-----~~~~~~~~~~~~~~I~~~~vsf~y~~---------------------------- 485 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFI-----NKKKRTELNNLNGDIVINDVSYSYGY---------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHcCCCccc-----ccccccCCCCCCCcEEEEEEEEEcCC----------------------------
Confidence 455666777777776554410 00000111122346999999998631
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
.+.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++
T Consensus 486 -----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 486 -----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred -----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 124899999999999999999999999999999999999998 9999999999876653 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+ ++.||+|||.++.+. ....+.+. ++....+ .++. +..|+...||.
T Consensus 558 ~l-f~gTI~eNi~l~~~~---~~~~~~i~---------------------~a~~~a~------l~~~--i~~lp~gldt~ 604 (708)
T TIGR01193 558 YI-FSGSILENLLLGAKE---NVSQDEIW---------------------AACEIAE------IKDD--IENMPLGYQTE 604 (708)
T ss_pred ee-hhHHHHHHHhccCCC---CCCHHHHH---------------------HHHHHhC------CHHH--HHhcccccCcE
Confidence 55 567999999986321 11111111 1111000 1111 23577889999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
||+. ...||||||||++|||||+++|++|+||||||+||+.++..+++.|+++ .++|+|+..|++ ++.+.+|+|
T Consensus 605 i~e~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i 678 (708)
T TIGR01193 605 LSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKI 678 (708)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEE
Confidence 9864 5679999999999999999999999999999999999999999999874 356777666554 567889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|+++++++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=325.48 Aligned_cols=212 Identities=25% Similarity=0.288 Sum_probs=168.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4999999999999999999999999999999999998741 012899999999875432 23578999999888999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.++.+..+..... .+....++++++.+||.+..+.. -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSK--------------------------------KELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCCH--------------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 99999999875432110000 00112345678888986421111 1344
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|+ ++|...++.+++|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii-~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVL-VTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEE-EeCCHHHHHHhcCEEEEEEC
Confidence 57899999999999999999999999999999999999999999999974 2555555 45666788899999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988774
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=338.74 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
+.+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.|+|+++..... ++.++||+|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986311 128999999998865432 246999999864
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 237 --HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+.+||.+++.+.......... .. .+. .+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~--~~---~~~-----------------------~~~~~~~~~~L~~~gL~~~~~- 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGR--WW---QRF-----------------------GWRKRRAIELLHRVGIKDHKD- 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccc--cc---ccH-----------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 57889999999864321100000 00 000 001123567899999975322
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+.+..+.+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.+. +|+.++|+...+.+++|+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~-tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT-TILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhCCE
Confidence 123567799999999999999999999999999999999999999999999998753344 455567788899999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|+|++.|+.+++.
T Consensus 229 i~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 229 INVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998774
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=324.77 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=170.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998764332 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++....... ......... ......++++++.+||++..++. +
T Consensus 93 tv~~nl~~~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (242)
T TIGR03411 93 TVFENLELALPRDKSV--FASLFFRLS------------------------AEEKDRIEEVLETIGLADEADRL-----A 141 (242)
T ss_pred CHHHHHHHhhhccccc--ccccccccH------------------------HHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 9999999864321000 000000000 00112356788999998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.++||+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVV-EHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEE-ECCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999854 4555555 56677889999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+.+++.
T Consensus 219 ~~~~~~~~~~~~ 230 (242)
T TIGR03411 219 SVLAEGSLDQVQ 230 (242)
T ss_pred eEEeeCCHHHHh
Confidence 999999987763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=327.05 Aligned_cols=221 Identities=23% Similarity=0.306 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765332 2348899999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.++....... +....... + +... + ...+....++++++.+||.+..+..
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~--------~-~~~~---~----~~~~~~~~~~~~l~~~gl~~~~~~~----- 150 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLK--------T-PAFR---R----AESEALDRAATWLERVGLLEHANRQ----- 150 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcc--------c-cccc---c----chhHHHHHHHHHHHhCChhhhhhCC-----
Confidence 99999999865321000 00000000 0 0000 0 0001112356678899997666544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|++ +|...++.++||++++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLI-EHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE-eCCHHHHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865335555555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988763
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=331.15 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999998 999999999875421 2356899999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
.++..||+||+.|.....+... . +....++++++.+||.. ..+.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~- 141 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------E------------------------EAEALAREKLALVGISESLFEK- 141 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhhC-
Confidence 3445799999998654322100 0 00113456788899963 4443
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+++ |..+++.+++|++
T Consensus 142 ----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivs-H~~~~~~~~~d~i 215 (280)
T PRK13649 142 ----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVT-HLMDDVANYADFV 215 (280)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999865 456666654 5667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=321.37 Aligned_cols=197 Identities=25% Similarity=0.343 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35999999999999999999999999999999999999998 999999999875432 35799999998888999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.. ...+..+++.+||++..|.. +..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKK-----AKQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhh-----HhhC
Confidence 9998865432110 01234578889998766654 4579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++++.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|+++ |...++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSS-HILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEc-CCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999864 456666655 5566888999999999999999
Q ss_pred EecCHH
Q 001957 405 YQGPRE 410 (991)
Q Consensus 405 ~~G~~~ 410 (991)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=330.69 Aligned_cols=203 Identities=28% Similarity=0.374 Sum_probs=168.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCC-CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~~ 240 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4999999999999999999999999999999999999998 999999999886432 2357999999864 4677
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.||+.|.....+... .+....++++++.+||.+..++.
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~----- 133 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRS----- 133 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCC-----
Confidence 999999998754322110 00112346678899998776654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++ |+..++ ..+|+|++|++
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~t-H~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYIT-HNLEEL-HDADRIIVMDR 210 (274)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cCHHHH-hhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 466666654 555666 56999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=329.14 Aligned_cols=204 Identities=27% Similarity=0.377 Sum_probs=167.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC--c---cccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 4999999999999999999999999999999999999998 9999999998742 1 12356999999864 345
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||.||+.+.....+... . +....++.+++.+||.+..++.
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 133 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------A------------------------EITRRVDEALTLVDAQHFRHQP---- 133 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhcCC----
Confidence 6789999988654322110 0 0011345678899998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+..++.+++|++++|+
T Consensus 134 -~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~-vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 134 -IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVII-SSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred -chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 4555555 5567778889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=377.16 Aligned_cols=260 Identities=22% Similarity=0.258 Sum_probs=192.4
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCC-CCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
++....++|+.++++.+++.-......+...... +.....++|+|+++.++.
T Consensus 437 ~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 489 (710)
T TIGR03796 437 QELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP--------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC---------------------------
Confidence 4566677788777766544110000000000000 111347999999998732
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
..+.+|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 490 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 490 -----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred -----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 1134999999999999999999999999999999999999998 9999999999876643 5789999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++.|++|||.++. +....+... ++....+ .++. +..|+...||
T Consensus 562 ~~l-f~gTi~eNi~l~~----~~~~~~~i~---------------------~al~~~~------l~~~--i~~lp~gl~t 607 (710)
T TIGR03796 562 IFL-FEGTVRDNLTLWD----PTIPDADLV---------------------RACKDAA------IHDV--ITSRPGGYDA 607 (710)
T ss_pred Chh-hhccHHHHhhCCC----CCCCHHHHH---------------------HHHHHhC------CHHH--HHhCcCcccc
Confidence 655 4689999998752 111111111 1111000 1111 2346778899
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..|++.|++ .++|+|+..|++ ++...||+
T Consensus 608 ~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~ 680 (710)
T TIGR03796 608 ELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDE 680 (710)
T ss_pred eeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCE
Confidence 99965 567999999999999999999999999999999999999999999986 357777766554 56677999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+++++|+++++++
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=326.68 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|++++ + +|+|.++|+++... ..++.++|++|+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI---EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCc---ceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 499999999999999999999999999999999999874 5 99999999987532 1235699999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ +||+||+.|..+..+... . +....++++++.+|+.......
T Consensus 103 ~~~~-~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 147 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIHGANK----------K------------------------DLDGVVENALRSAALWDETSDR 147 (258)
T ss_pred ccCc-ccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcchhhh
Confidence 7777 999999998754322100 0 0011245678888874211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.+++|+|
T Consensus 148 ~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiiv-sH~~~~~~~~~d~i 223 (258)
T PRK14268 148 L-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIV-THNMQQAARISDYT 223 (258)
T ss_pred h-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEE-ECCHHHHHHhCCEE
Confidence 1 234568999999999999999999999999999999999999999999999853 5555554 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 224 ~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 224 GFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=320.56 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=162.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999998 999999999876432 235789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+.... +....++.+++.+||.+..++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~---- 133 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASGD----------------------------------DIRRRVSAALDKVGLLDKAKN---- 133 (222)
T ss_pred ccccHHHHHHhHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCChhhhhC----
Confidence 999999999987543321100 001124567888999876654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|..+++..++|+|++|
T Consensus 134 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 134 -FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLM-ATHDIGLISRRSYRMLTL 210 (222)
T ss_pred -CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 3468999999999999999999999999999999999999999999999865 3555544 566777888999999999
Q ss_pred cCCeEE
Q 001957 399 SDGQIV 404 (991)
Q Consensus 399 ~~G~iv 404 (991)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=328.97 Aligned_cols=204 Identities=28% Similarity=0.390 Sum_probs=168.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--c---ccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++++ +|+|.++|+++... . .++.++|++|+.. .++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4999999999999999999999999999999999999998 99999999987421 1 2357999999853 445
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+.....+.. + . +....+..+++.+||.+..|+.
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~L~~~~~~~---- 134 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------E------------------------EVEKRVKEALKAVGMEGFENKP---- 134 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCchhhcCC----
Confidence 689999998864321110 0 0 0111345678999998777655
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|...++.++||++++|+
T Consensus 135 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~v-tH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 135 -PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIIS-THDVDLVPVYADKVYVMS 211 (275)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999865 45555554 566778889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=323.78 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=166.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4999999999999999999999999999999999999998 999999999875432 2457899999877665 79
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+||+.+.....+. ....++.+++.+||+ +..+ ..+
T Consensus 93 v~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYAT-----RDV 129 (241)
T ss_pred HHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhh-----CCc
Confidence 99999875432100 001234578889996 3444 345
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|+ ++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~-~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW-ITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeccHHHHHHhCCEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999986534566555 456677889999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=334.07 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 99999999987532 12357899999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++.+||+||+.|+....+... .+....++++++.+||. ...++
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISK- 141 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhC-
Confidence 4446899999998754322100 00112356688999996 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+.+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvli-vsH~~~~~~~~~d~v 215 (287)
T PRK13641 142 ----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVIL-VTHNMDDVAEYADDV 215 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999854 4555555 567788899999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=324.17 Aligned_cols=203 Identities=28% Similarity=0.341 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC------c---cccceEEEEecCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~---~~~~~~~yv~Q~d~ 236 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|+..
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999998 9999999998631 1 11356899999998
Q ss_pred CCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 237 HIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
+++.+||+||+.+.. ...+... . +....++.+++.+||++..+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------D------------------------QALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 2211100 0 0012346678899998766654
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|+..++.+++|++
T Consensus 139 -----~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 -----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIV-THEVEVARKTASRV 211 (242)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEE
Confidence 468999999999999999999999999999999999999999999999854 45665555 55667888999999
Q ss_pred EEecCCeEEEecCHHHH
Q 001957 396 ILLSDGQIVYQGPRELV 412 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (991)
++|.+|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=324.96 Aligned_cols=212 Identities=22% Similarity=0.301 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCC--Cc---cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EF---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~--~~---~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. .. ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4999999999999999999999999999999999998762 012899999999875 21 1235799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++...++.....+ .....++++++.+||....... -+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDR-LN 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhh-hc
Confidence 99999999998754321100000 0011245577788874321111 13
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++ +|..+++.++||+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLV-THSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEE-ECCHHHHHhhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999853 4555555 55667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=317.94 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=162.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998865332 357999999988888999999998
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
++........ + .....++++++.+||.+..++. +..|||||
T Consensus 93 ~~~~~~~~~~---------~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKLT---------A-------------------------EDRQAIEVALARVGLAGLEKRL-----PGELSGGE 133 (211)
T ss_pred cccccccCcc---------H-------------------------HHHHHHHHHHHHcCCHHHHhCC-----cccCCHHH
Confidence 8643110000 0 0112346688999998766654 46899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
|||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+ ++|...++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM-VTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999986544556555 566777889999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=325.72 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----------------cccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----------------~~~~~~ 228 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999998 99999999987421 113578
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC
Q 001957 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (991)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (991)
+|++|++.+++.+||+||+.++.. ..+.. . ......+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-H---------------------------------HHHHHHHHHHHHHcC
Confidence 999999988999999999987542 11110 0 001123456788999
Q ss_pred Ccccc-cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 308 LDVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 308 L~~~~-dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
|.+.. + ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..
T Consensus 141 l~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiiv-sH~~~ 213 (257)
T PRK10619 141 IDERAQG-----KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVV-THEMG 213 (257)
T ss_pred CChhhhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHH
Confidence 97643 3 34568999999999999999999999999999999999999999999999865 45565555 56677
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 888899999999999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=323.57 Aligned_cols=213 Identities=27% Similarity=0.326 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 35999999999999999999999999999999999995 577 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+|++.+.......... ....+ ..+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEPLD---------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------ccccc---------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999986542210000 00000 000112356788999997 34554332
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 396 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vi 396 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~v-sH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLII-THYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEE-EecHHHHHhhcCCeEE
Confidence 25999999999999999999999999999999999999999999999864 45666655 5566678887 89999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=373.93 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=175.0
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
..++|+|+++.++. + +++.+|+|+|++|+|||.++|+||||||||||++
T Consensus 477 ~~I~~~nVsf~Y~~------------------------------~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 477 GLIEFQDVSFSYPN------------------------------R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred CeEEEEEEEEECCC------------------------------C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46999999998731 0 1235999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
+|+|+++|+ +|+|++||+++++... ++.++||+|++. +++.||+|||.++..- ...+. +.+..+.+
T Consensus 526 lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lF~gTIreNI~~g~~~----~~~e~---i~~al~~a 594 (711)
T TIGR00958 526 LLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPV-LFSGSVRENIAYGLTD----TPDEE---IMAAAKAA 594 (711)
T ss_pred HHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcc-ccccCHHHHHhcCCCC----CCHHH---HHHHHHHc
Confidence 999999998 9999999999877653 478999999765 5568999999986321 11111 11111111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+ .++. +-.|++..||.+|+. ...||||||||++|||+|+++|+||+||||||+
T Consensus 595 ~------------------------l~~~--i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSa 647 (711)
T TIGR00958 595 N------------------------AHDF--IMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647 (711)
T ss_pred C------------------------CHHH--HHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccc
Confidence 0 0111 224677889999964 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||+.+...+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|+++++|+++++++
T Consensus 648 LD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 648 LDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred cCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 99999999988 322 2456777766554 5678899999999999999999999864
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=321.01 Aligned_cols=204 Identities=26% Similarity=0.391 Sum_probs=171.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|+|++|+||++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 999999999886532 2467999999998899999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.++....+... . .....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------K------------------------EIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9998753321100 0 00112456788899987766544 5799
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++..+.|+|+++| ..+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH-~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH-DFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986644666666654 5578899999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=321.36 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=171.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|+.
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 36799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+....++.... .....++++++.++|....|+. ++.|
T Consensus 91 enl~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPKA----------------------------------KIKARVEELLELVQLEGLGDRY-----PNQL 131 (237)
T ss_pred HHHHhHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHhHhhCC-----hhhC
Confidence 999987543321000 0011245678889997666654 4579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||+||++||++|+.+|++++|||||+|||..+...+.+.|+++++..+.|+|+++| ...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH-~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH-DQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHhhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999986533566766655 556889999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988774
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=342.11 Aligned_cols=207 Identities=22% Similarity=0.308 Sum_probs=173.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (991)
|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999987531 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.. ....++++++.+||++..|.. ++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRY-----PG 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCC-----cc
Confidence 999999864200 001245678999998776654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|+..++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~-vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY-VSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE-EecCHHHHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999987644555555 4567789999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
++..|+++++. ..|.....|.|+
T Consensus 207 i~~~g~~~~i~--------~~p~~~~~~~~~ 229 (352)
T PRK11144 207 VKAFGPLEEVW--------ASSAMRPWLPKE 229 (352)
T ss_pred EEEecCHHHHH--------hCcchhhhhccc
Confidence 99999999884 245555555554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=327.95 Aligned_cols=209 Identities=22% Similarity=0.330 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5999999999999999999999999999999999999998 999999999875432 2356999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+.++..... .. ... . . ......++.+++.++|++..++.+ +
T Consensus 102 v~e~l~~~~~~~~-~~-~~~--------------~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 146 (265)
T PRK10575 102 VRELVAIGRYPWH-GA-LGR--------------F-G-------------AADREKVEEAISLVGLKPLAHRLV-----D 146 (265)
T ss_pred HHHHHHhCccccc-cc-ccC--------------C-C-------------HHHHHHHHHHHHHcCCHHHhcCCc-----c
Confidence 9999988642100 00 000 0 0 000123466888999987666544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~-sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV-LHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCe
Confidence 7999999999999999999999999999999999999999999999875445565555 556778899999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=327.23 Aligned_cols=208 Identities=24% Similarity=0.376 Sum_probs=170.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 5999999999999999999999999999999999999998 9999999998764322 356899999998889999
Q ss_pred HHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 243 VRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+||+.++..-. +..... . +.....++++++.+||.+..|+ .+
T Consensus 98 v~~~~~~~~~~~~~~~~~~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~ 141 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW---R----------------------------KEDEEAVTKAMQATGITHLADQ-----SV 141 (265)
T ss_pred HHHHHHhCcccccccccCC---C----------------------------HHHHHHHHHHHHHcCCHHHhcC-----Cc
Confidence 999998753110 000000 0 0001234668889999876654 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~-tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV-LHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999875335555554 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=321.37 Aligned_cols=207 Identities=23% Similarity=0.283 Sum_probs=167.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCeeeEEEECCeeCCCccc-cceEEEEecCCC--CCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~----~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (991)
+|+|||+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|+.. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999988 7 9999999998865432 257999999874 556
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|+.|++.+.....+... . .....++++++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS---------K-------------------------QARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH---------H-------------------------HHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987653221100 0 0112356688999997320 11134
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++ +|..+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI-THDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865335555555 556678889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=323.56 Aligned_cols=210 Identities=21% Similarity=0.290 Sum_probs=166.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 4999999999999999999999999999999999998631 01299999999987532 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++.+..+...+ ......+.++++.++|.+..+... +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~ 158 (267)
T PRK14237 114 A-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL-H 158 (267)
T ss_pred c-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-c
Confidence 6 6999999987543211000 001122455788888864332222 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|..+++.++||++++|
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~-tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KNYTIIIV-THNMQQAARASDYTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEE-ecCHHHHHHhcCEEEEE
Confidence 5667899999999999999999999999999999999999999999999974 35555555 55666889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 236 YLGDLIEYDKTRNIF 250 (267)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=330.56 Aligned_cols=205 Identities=19% Similarity=0.283 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----c----cccceEEEEecCCC-
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~----~~~~~~~yv~Q~d~- 236 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. . ..++.++|++|+..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999998742 1 12357899999863
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.+...||+||+.|+....+... . +....++.+++.++|+ +..++
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------Q------------------------EAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhHhcC-
Confidence 2345799999998653221100 0 0011245678889994 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++
T Consensus 147 ----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiii-sH~~~~~~~~~d~i 221 (289)
T PRK13645 147 ----SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMV-THNMDQVLRIADEV 221 (289)
T ss_pred ----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEE
Confidence 4468999999999999999999999999999999999999999999999875445565554 56667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.45 Aligned_cols=208 Identities=23% Similarity=0.316 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++| + +|+|+++|+++... ..++.++|++|+.
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999987531 1245789999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||.||+.|+.+.++.... +. +....++++++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARS--------KA------------------------ELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccc--------hH------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7776 4999999987643321100 00 0011345678888986422111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|+.+++.+++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiiv-tH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIV-THSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEE-EcCHHHHHhhCCEE
Confidence 1 234578999999999999999999999999999999999999999999999853 4555554 55677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=324.12 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+++... ..++.++|++|+.
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA---EGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc---ceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 49999999999999999999999999999999999986 35 89999999987421 1245799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ +||+||+.+.......... . +....++++++.++|.......
T Consensus 104 ~~~~-~tv~~nl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 149 (260)
T PRK10744 104 TPFP-MSIYDNIAFGVRLFEKLSR---------A------------------------EMDERVEWALTKAALWNEVKDK 149 (260)
T ss_pred ccCc-CcHHHHHhhhHhhcCCCCH---------H------------------------HHHHHHHHHHHHcCCChhhHHH
Confidence 7776 8999999987543210000 0 0011345678888874321111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+++|++
T Consensus 150 ~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~-sH~~~~~~~~~d~i 225 (260)
T PRK10744 150 L-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QDYTVVIV-THNMQQAARCSDYT 225 (260)
T ss_pred H-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHHhCCEE
Confidence 1 23456899999999999999999999999999999999999999999999984 35555554 55667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++..|+.+++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 226 AFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=321.59 Aligned_cols=202 Identities=27% Similarity=0.323 Sum_probs=165.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ..+|++|+..+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999998 9999999998865432 248999999889999999999
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.+..+....... + .+....++++++.+||++..++. +..||||
T Consensus 76 ~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------K------------------------SERRAIVEEHIALVGLTEAADKR-----PGQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------H------------------------HHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHH
Confidence 986421000000 0 00112345678899998766654 4589999
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-THDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999999876445565555 55667889999999999999999998
Q ss_pred CHHHH
Q 001957 408 PRELV 412 (991)
Q Consensus 408 ~~~~~ 412 (991)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 75543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.40 Aligned_cols=201 Identities=23% Similarity=0.380 Sum_probs=167.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998764322 357999999998899999999998
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+..... .... . .....++++++.+||++..|+.+ +.|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 763210 0000 0 00123466889999987776554 5899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||+||++++.+|++++|||||+|||..++..+.+.|+++++..+.|+|++ +|...++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV-SHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999866445666665 556678889999999999999999999
Q ss_pred HHHHH
Q 001957 409 RELVL 413 (991)
Q Consensus 409 ~~~~~ 413 (991)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=297.87 Aligned_cols=205 Identities=27% Similarity=0.395 Sum_probs=178.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++.- -..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45999999999999999999999999999999999999998 99999999998753 34569999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
+|++|+.+++|.... .|+ .++.+.+...||.+..+ +++-+|
T Consensus 93 dNvafgL~l~Gi~k~-------~R~---------------------------~~a~q~l~~VgL~~~~~-----~~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QRR---------------------------EIAHQMLALVGLEGAEH-----KYIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HHH---------------------------HHHHHHHHHhCcccccc-----cceEee
Confidence 999999999887532 111 24566788999987765 455689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~ 402 (991)
||||||||.|||||+.+|++|+||||+.+||.-++.++...|-++.+..++ -++.|+|..+|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999999886554 45556789999999999999998 589
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
|+..-+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877763333
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=326.69 Aligned_cols=206 Identities=25% Similarity=0.316 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+. .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235699999985 4
Q ss_pred CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (991)
+++.+||+||+.+..... +.. . ......++++++.+||. ...|.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------E------------------------SEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998764311 100 0 00112345678899995 55554
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|....+.+++|+
T Consensus 147 -----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 -----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFI-THDLRLVQSFCQR 220 (265)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHHhcE
Confidence 4468999999999999999999999999999999999999999999999875335565554 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=316.74 Aligned_cols=195 Identities=24% Similarity=0.387 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999998 99999999987421 12367999999988888
Q ss_pred CCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.++.. .++... . +....++.+++.+||++..++.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 132 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSK----------A------------------------EAEERALELLEKVGLADKADAY--- 132 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhhC---
Confidence 9999999998642 111100 0 0112345678889998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.+++|++++|
T Consensus 133 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~-~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 133 --PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVV-VTHEMGFAREVADRVIFM 208 (213)
T ss_pred --ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999875 4556555 556777889999999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=339.32 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=168.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (991)
|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999998 99999999987532 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.... . +....++++++.+||++..|.. +.
T Consensus 92 v~enl~~~~~~~~~------------~------------------------~~~~~~~~~l~~~gL~~~~~~~-----~~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------S------------------------ERRISFERVIELLGIGHLLGRL-----PG 130 (354)
T ss_pred HHHHHHHHhhccCh------------h------------------------HHHHHHHHHHHHcCChhHhcCC-----hh
Confidence 99999987532100 0 0012346688999998777654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiiv-tH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV-SHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999999876445555555 566778999999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.27 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---cCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~---~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~ 236 (991)
+.+|+|||+.+++|++++|+||||||||||+++|+|+ .++. ..+|+|.++|+++... ..++.++|++|+..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999997 3331 1289999999987542 12357999999987
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++ .||+||+.++.+.++.... + .....++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN-----A----------------------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999987543321100 0 00113456788888864322222
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|+..++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiv-tH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIV-THNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHhhCCEEE
Confidence 24567899999999999999999999999999999999999999999999984 35565554 566678889999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=325.20 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=168.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999998 999999999876422 2467999999863 67889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.++....+... . +....++++++.+||.+..++. +
T Consensus 98 tv~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIPR----------E------------------------EMIKRVDEALLAVNMLDFKTRE-----P 138 (277)
T ss_pred CHHHHHHhhHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCHhHhhCC-----c
Confidence 99999988654221100 0 0011346678889997766654 5
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~-sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI-THDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHH-hCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999876436666665 45566665 69999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.31 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=167.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++|++++|+|||||||||||++|+|..++. ...+|+|.+||+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999998632 2346799999987766
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
..||+||+.|+....+... .+ .....+...++.++|.+..++.++
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~- 220 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD- 220 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh-
Confidence 5899999998754321100 00 001123456777777654455554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+....|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|....+.+++|+|++|
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~-iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIII-VTHSMAQAQRISDETVFF 297 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998753 455544 556677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999884
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.21 Aligned_cols=209 Identities=26% Similarity=0.371 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 235699999998888889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.++...... .. .... ......++++++.+||.+..++. +
T Consensus 92 tv~~~i~~~~~~~~~-----~~-------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 136 (255)
T PRK11231 92 TVRELVAYGRSPWLS-----LW-------------GRLS------------AEDNARVNQAMEQTRINHLADRR-----L 136 (255)
T ss_pred cHHHHHHhccchhhh-----hc-------------cCCC------------HHHHHHHHHHHHHcCCHHHHcCC-----c
Confidence 999999986321000 00 0000 00112346678899998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~-tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTV-LHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECCHHHHHHhcCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999765 45565555 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=325.30 Aligned_cols=216 Identities=23% Similarity=0.306 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--------ccceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--------~~~~~~yv~Q~d~ 236 (991)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|+..
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999999875222599999999875321 1356899999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.+....... ...+. ... ...+....++++++.+||.+..|..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~----~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC----FSW-------------FTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh----ccc-------------ccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 89999999999876421100 00000 000 0000112356788999998766654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++ +|+.+++.+++|+|+
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~-tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT-LHQVDYALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999876445555555 566678899999999
Q ss_pred EecCCeEEEecCHHHH
Q 001957 397 LLSDGQIVYQGPRELV 412 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (991)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=393.38 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=181.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
.+|+|+||++.+.. + ....||+|+|++|+||+.+||+||||||||||++
T Consensus 1164 g~I~f~nVsF~Y~~------------------------------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~ 1212 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS------------------------------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMS 1212 (1466)
T ss_pred ceEEEEEEEEECCC------------------------------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 47999999998731 1 1235999999999999999999999999999999
Q ss_pred HHhcCcCCC---------------------------------------------------CCeeeEEEECCeeCCCccc-
Q 001957 197 ALAGKLDPT---------------------------------------------------LKVSGTVTYNGHDMDEFVP- 224 (991)
Q Consensus 197 ~LaG~~~~~---------------------------------------------------~~~~G~I~~nG~~~~~~~~- 224 (991)
+|.|+++|. ...+|+|++||+++.+...
T Consensus 1213 LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~ 1292 (1466)
T PTZ00265 1213 LLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLK 1292 (1466)
T ss_pred HHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHH
Confidence 999999981 0028999999999987653
Q ss_pred --cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 225 --~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
++.++||+|++. ++..||+|||.|+.. ....+. +.+..+.+++ ++
T Consensus 1293 ~lR~~i~~V~Qep~-LF~gTIreNI~~g~~----~at~ee---I~~A~k~A~l------------------------~~- 1339 (1466)
T PTZ00265 1293 DLRNLFSIVSQEPM-LFNMSIYENIKFGKE----DATRED---VKRACKFAAI------------------------DE- 1339 (1466)
T ss_pred HHHhhccEeCCCCc-cccccHHHHHhcCCC----CCCHHH---HHHHHHHcCC------------------------HH-
Confidence 578999999765 558999999999731 111111 1111111111 11
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
.+..|++.+||.||+ ....||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++....++|+|+..|
T Consensus 1340 -fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1340 -FIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred -HHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 134689999999995 456699999999999999999999999999999999999999999999874224677777665
Q ss_pred cCCchhHhhcCeEEEecC----CeEE-EecCHHHHHH
Q 001957 383 QPAPETYDLFDDIILLSD----GQIV-YQGPRELVLE 414 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~----G~iv-~~G~~~~~~~ 414 (991)
+. ++.+.||+|++|++ |+++ ++|+++++++
T Consensus 1418 Rl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1418 RI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred hH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 54 67888999999999 9955 8999999863
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=314.37 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=164.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999998 999999999875432 2467999999998889999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+...... ... . .....++++++.+||++..++. ++.||
T Consensus 90 n~~~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN--------A-------------------------EQQEKVVDAAQQVGIADYLDRL-----PEQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc--------H-------------------------HHHHHHHHHHHHcCcHHHhhCC-----cccCC
Confidence 9987542110 000 0 0011345678999998766644 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+..+.|+|+ ++|..+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~-vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM-VTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999986533555555 4566678889999999999999999
Q ss_pred ecC
Q 001957 406 QGP 408 (991)
Q Consensus 406 ~G~ 408 (991)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=320.43 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=166.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999985 3111289999999987532 1246799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++.+..+.... . +....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR---------S------------------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999886543211000 0 00113456778888854211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.++||++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIV-THNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEE-ECCHHHHHhhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999864 4555554 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=319.62 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=164.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|+..++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 49999999999999999999999999999999999853 4211389999999987431 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... + .....++++++.+++.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-----Q----------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221100 0 00112345677777743211111 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|+.+++.++||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLV-TRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEE-ECCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999753 4555554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=322.20 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=166.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|.- ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 49999999999999999999999999999999999986410 0299999999987421 1235799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....+.... . .....++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------K------------------------DLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999987643221000 0 01123456788888742111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|...++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii-vsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVI-VTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHHHHhCCEEEEE
Confidence 44578999999999999999999999999999999999999999999999853 455555 556677889999999999
Q ss_pred c------CCeEEEecCHHHHH
Q 001957 399 S------DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (991)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 7 79999999988774
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=316.01 Aligned_cols=194 Identities=31% Similarity=0.443 Sum_probs=159.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.... .++.++|++|+.. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999998 999999999876432 2357899999864 4678
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... . .....++++++.+||++..+..
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~----- 131 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------E------------------------EIEERVEEALELVGLEGLRDRS----- 131 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCcHhhhcCC-----
Confidence 999999988654321100 0 0011345678899997666544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++..+||+|++|++
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIV-THDLDLLLELADRVIVLED 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999875 35555554 5667788899999999998
Q ss_pred Ce
Q 001957 401 GQ 402 (991)
Q Consensus 401 G~ 402 (991)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=319.69 Aligned_cols=210 Identities=22% Similarity=0.317 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc-----ccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4999999999999999999999999999999999998741 012899999999885321 245699999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.|.....+.... . .....++.+++.+||....... -+
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------K------------------------ELDKIVEWALKKAALWDEVKDD-LK 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCchhhhhH-hh
Confidence 6 9999999987543321100 0 0011234567788874211011 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|...++.++||++++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiiv-sH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIV-THNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEE-EcCHHHHHHhcCEEEEE
Confidence 45678999999999999999999999999999999999999999999999864 4565555 45667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998874
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.93 Aligned_cols=208 Identities=29% Similarity=0.408 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 34689999998778889
Q ss_pred CHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 242 TVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
||+||+.++.. ..... .. +. .+....++++++.+||.+..|+.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------~~-~~--------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLW----------------AG-DS--------------PHDAAVVDRALARTELSHLADRD----- 134 (256)
T ss_pred CHHHHHHhcchhhhhhc----------------cC-CC--------------HHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 99999988531 10000 00 00 00012345678899997666654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|..+++.+++|+|++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAA-LHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence 458999999999999999999999999999999999999999999999864 45555555 5566788899999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999987753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=319.03 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+++.... .++.++|++|+..+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 59999999999999999999999999999999999975 45 999999999886532 2357899999887776
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.||+||+.++...++.... . ......++.+++.++|........ +.
T Consensus 93 -~tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 7999999987543321000 0 000112456788889853211111 24
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMV-THNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-ecCHHHHHhhCcEEEEEE
Confidence 5678999999999999999999999999999999999999999999999753 5555554 566778899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=356.99 Aligned_cols=255 Identities=23% Similarity=0.321 Sum_probs=191.8
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+.+.- +....+.+...++++|+++.++.
T Consensus 285 ~~~~~~~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 328 (544)
T TIGR01842 285 SGARQAYKRLNELLANYPSRD--------PAMPLPEPEGHLSVENVTIVPPG---------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHhCCcccc--------CCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 456666777777765544310 01111223346999999988631
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 329 ----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 329 ----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred ----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 1135899999999999999999999999999999999999998 9999999999876543 46899999987
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .|++||+.+... ..+.+...+. .+. ...++.++ .|++..||.
T Consensus 402 ~lf~-~ti~~Ni~~~~~----~~~~~~~~~~---~~~------------------------~~~~~~i~--~l~~gl~t~ 447 (544)
T TIGR01842 402 ELFP-GTVAENIARFGE----NADPEKIIEA---AKL------------------------AGVHELIL--RLPDGYDTV 447 (544)
T ss_pred cccc-ccHHHHHhccCC----CCCHHHHHHH---HHH------------------------hChHHHHH--hCccccccc
Confidence 6665 599999985431 1111111110 000 00122333 356677898
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++.. .++|+|++.|++ +..+.||+|
T Consensus 448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~--~~~~~~d~i 523 (544)
T TIGR01842 448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP--SLLGCVDKI 523 (544)
T ss_pred cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH--HHHHhCCEE
Confidence 885 4677999999999999999999999999999999999999999999998743 467777777665 356789999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|+++++.+
T Consensus 524 ~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 524 LVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEECCEEEeeCCHHHHhh
Confidence 9999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=320.57 Aligned_cols=210 Identities=21% Similarity=0.320 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|+++|+++... ..++.++|++|+..++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 49999999999999999999999999999999999986 3211389999999987521 1235799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+. ||+||+.|..+..+...+ . +....++.+++.++|.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------K------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999987543221000 0 00112445677888753211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+++|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-tH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIV-THNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEE-EcCHHHHHHhCCEEEEE
Confidence 45578999999999999999999999999999999999999999999999753 5565555 45667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=345.42 Aligned_cols=220 Identities=22% Similarity=0.269 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++|++|.+......+|.
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~--------~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD--------LIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC--------CEEEEeccCCCCCCCCCHH
Confidence 35999999999999999999999999999999999999998 999999863 1367888865444557888
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCC-hHHHHHH---HH-hhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD-IDVYMKA---IA-TEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+++..+.... .................+..+ +..+... .. ..+......++.+++.+||.. + .
T Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~-----~ 152 (635)
T PRK11147 85 DFVAEGIEEQ-----AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--D-----A 152 (635)
T ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--C-----C
Confidence 8765332100 000000000000000000000 0000000 00 001122345678899999962 3 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+| .++|+...+.++||+|++|+
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvl-ivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSII-FISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEE-EEeCCHHHHHHhcCeEEEEE
Confidence 45689999999999999999999999999999999999999999999875 24544 45678889999999999999
Q ss_pred CCeEE-EecCHHHH
Q 001957 400 DGQIV-YQGPRELV 412 (991)
Q Consensus 400 ~G~iv-~~G~~~~~ 412 (991)
+|+++ |.|+.++.
T Consensus 228 ~G~i~~~~g~~~~~ 241 (635)
T PRK11147 228 RGKLVSYPGNYDQY 241 (635)
T ss_pred CCEEEEecCCHHHH
Confidence 99997 55765543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=318.01 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=163.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|++++ ....+|+|.++|+++... ..++.++|++|+..++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998753 111389999999987531 1245789999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.++....+.... . .....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------K------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999987543321100 0 00112345567777642111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|+.+++.+++|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~-sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIV-THNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-EeCHHHHHhhCCEEEEE
Confidence 4457899999999999999999999999999999999999999999999974 35565555 55677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=323.39 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=162.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++... ..++.++|++|+.
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999987 45 99999999987421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.+...+... + ....++.+++.+++....+..
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 7777 599999998764332100 0 001223456666664211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|+..++.++||++
T Consensus 148 -~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii-vtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 -LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVI-VTHNMQQAVRVSDMT 223 (269)
T ss_pred -hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhcCEE
Confidence 1345578999999999999999999999999999999999999999999999843 455555 556777999999999
Q ss_pred EEecC-----------CeEEEecCHHHHH
Q 001957 396 ILLSD-----------GQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~ 413 (991)
++|++ |++++.|+++++.
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHH
Confidence 99996 6799999998875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=307.89 Aligned_cols=171 Identities=43% Similarity=0.694 Sum_probs=151.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998865334567999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999764210 0
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ .+.|+|++.|++..++.+++|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 5999999999999999999999999999999999999999999999865 467777776665557889999999999999
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=318.78 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=165.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999987532 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... + .....+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK-----H----------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 6 8999999987543221100 0 0011234567777875321111 23
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~-sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIV-THNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEE-eCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999753 4555555 55666889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988774
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=320.48 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee-----CCCccc-------cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4999999999999999999999999999999999999998 9999999997 654321 246899999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-
Q 001957 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (991)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (991)
+. .+++.+|+.||+.+.....+... . . +....++++++.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~---~-----------------------------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y---G-----------------------------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H---H-----------------------------HHHHHHHHHHHHcCCChh
Confidence 86 35778899999976532111000 0 0 00113456788999963
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++ .+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++.+..+.|+|+ ++|...++.+
T Consensus 144 ~~~~-----~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-isH~~~~~~~ 217 (258)
T PRK11701 144 RIDD-----LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI-VTHDLAVARL 217 (258)
T ss_pred HHhC-----CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EeCCHHHHHH
Confidence 4443 446899999999999999999999999999999999999999999999986533555554 5667778889
Q ss_pred hcCeEEEecCCeEEEecCHHHHH
Q 001957 391 LFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=319.03 Aligned_cols=203 Identities=23% Similarity=0.262 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCeeeEEEECCeeCCCccc-cceEEEEecCCC--CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~----~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~ 238 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++| + +|+|.++|+++..... ++.++||+|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 489999999999999999999999999999999999988 6 9999999998864322 257999999864 44
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc---ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---CADTM 315 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~ 315 (991)
+.+|+.+++.+.++..+... ....++++++.++|.+ ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-- 135 (254)
T PRK10418 94 PLHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLK-- 135 (254)
T ss_pred ccccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhh--
Confidence 66899999877543221100 0012456788999875 233
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..+..|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|++
T Consensus 136 ---~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~-sH~~~~~~~~~d~v 211 (254)
T PRK10418 136 ---LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV-THDMGVVARLADDV 211 (254)
T ss_pred ---cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhCCEE
Confidence 34568999999999999999999999999999999999999999999999876445555555 55667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.47 Aligned_cols=200 Identities=29% Similarity=0.419 Sum_probs=159.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 45999999999999999999999999999999999999998 9999999987652 346799999987653 4489
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.......... ... ......++.+++.+||++..++. +.
T Consensus 87 v~e~l~~~~~~~~~~~~--~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKGLFR--RLS----------------------------KADKAKVDEALERVGLSELADRQ-----IG 131 (213)
T ss_pred HHHHHHhcccccccccc--CCC----------------------------HHHHHHHHHHHHHcCCHHHHhCC-----cc
Confidence 99999986432110000 000 00112346688899998766654 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVV-THDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEcCc-
Confidence 8999999999999999999999999999999999999999999999875 45565555 56677888999999999876
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=364.98 Aligned_cols=256 Identities=24% Similarity=0.371 Sum_probs=193.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++.+..++|+.++.+.+++.- . -+....+.....++|+|+++.+..
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~-----~-~~~~~~~~~~~~i~~~~vsf~y~~---------------------------- 467 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPR-----S-AGLAALPELRGAITFENIRFRYAP---------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-----C-CCCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 466677788877776655410 0 000111112357999999998731
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|+.|+||+.++|+|+||||||||+++|+|+++|+ +|+|++||+++++... ++.++||+|++
T Consensus 468 ----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 468 ----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred ----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 1134899999999999999999999999999999999999998 9999999999887653 46799999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. +++.|++|||.++.. ....+... ++....+ .++. +-.|+...||.
T Consensus 541 ~-lf~~ti~eNi~~~~~----~~~~~~i~---------------------~a~~~~~------l~~~--i~~lp~gl~t~ 586 (694)
T TIGR01846 541 V-LFSRSIRDNIALCNP----GAPFEHVI---------------------HAAKLAG------AHDF--ISELPQGYNTE 586 (694)
T ss_pred e-ehhhhHHHHHhcCCC----CCCHHHHH---------------------HHHHHcC------hHHH--HHhCcCccCcE
Confidence 5 556799999987521 11111111 1110000 1112 22467788999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+. ...||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. .+.|+|++.|++ +....||+|
T Consensus 587 i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i 661 (694)
T TIGR01846 587 VGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL--STVRACDRI 661 (694)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh--HHHHhCCEE
Confidence 9865 56899999999999999999999999999999999999999999999874 467777776654 455679999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++++
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=358.53 Aligned_cols=207 Identities=26% Similarity=0.416 Sum_probs=167.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++ ++++.|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~-~lf~~T 421 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDV-VLFNDT 421 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCc-cccccc
Confidence 4999999999999999999999999999999999999998 9999999999876543 46799999976 566779
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++... ....+.+. ++.... -.++.+ -.|++..||.+|+. .+
T Consensus 422 i~~Ni~~~~~~---~~~~~~i~---------------------~~l~~~------~l~~~i--~~lp~gldt~i~~~-g~ 468 (571)
T TIGR02203 422 IANNIAYGRTE---QADRAEIE---------------------RALAAA------YAQDFV--DKLPLGLDTPIGEN-GV 468 (571)
T ss_pred HHHHHhcCCCC---CCCHHHHH---------------------HHHHHc------ChHHHH--HhCcCcccceecCC-CC
Confidence 99999986310 00011111 110000 011111 24667789999965 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+++.+|++++||||||+||..++..|++.|++.. .++|+|+.+|++ .....||+|++|++|+
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGR 544 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999864 457777777665 6678899999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999999885
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=288.30 Aligned_cols=202 Identities=28% Similarity=0.375 Sum_probs=171.7
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEe
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYIS 232 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~ 232 (991)
......+||++|++.|++||.++|+|||||||||||-+|+|+..|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3446688999999999999999999999999999999999999999 9999999999865532 36899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|...++|+||..||+...+.++|-..+. ........|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~----------------------------------~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSAD----------------------------------SRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCcccc----------------------------------HHHHHHHHHHHhCccccc
Confidence 9999999999999999998877632210 011234578899998766
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+ .++.+|||||+|||+||||++..|+|||.||||-.||..|..+|.+.|-.+.+..+.|.|+. +|+ +.+...|
T Consensus 141 ~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlV-THD-~~LA~Rc 213 (228)
T COG4181 141 T-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV-THD-PQLAARC 213 (228)
T ss_pred c-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEE-eCC-HHHHHhh
Confidence 5 56789999999999999999999999999999999999999999999999887655555554 444 3677889
Q ss_pred CeEEEecCCeEEE
Q 001957 393 DDIILLSDGQIVY 405 (991)
Q Consensus 393 D~vilL~~G~iv~ 405 (991)
||++-|..|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999975
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=317.44 Aligned_cols=212 Identities=21% Similarity=0.312 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+.+ +....+|+|+++|+++.... .++.++|++|+..+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 359999999999999999999999999999999999976 21012899999999875321 24578999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++. ||+||+.+....++..... ......++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 9999999874332210000 000112456788899865322222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiii-sH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVV-THSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHhhcCEEEE
Confidence 23457899999999999999999999999999999999999999999999974 35565555 5566688899999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.63 Aligned_cols=207 Identities=18% Similarity=0.263 Sum_probs=162.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ |+ +|+|.++|+++... ..++.++|++|+.
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 45 89999999987532 1235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.....+.... . ..+..+...++.+++.......
T Consensus 112 ~~~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFP-KSIYNNITHALKYAGERRK-----S----------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCc-ccHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 7777 4999999986532211000 0 0011234456777774211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-+..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|...++.+++|+|
T Consensus 158 -~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~-tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 -LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIV-THNMQQALRVSDRT 233 (268)
T ss_pred -HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEE-EeCHHHHHHhCCEE
Confidence 1245578999999999999999999999999999999999999999999999853 4555555 55667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=322.75 Aligned_cols=207 Identities=21% Similarity=0.237 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCC--CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+.. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999998753221 246899999864 567
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+||.|++.+..+....... ......++.+++.+||. +..++
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 145 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASY---- 145 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhc----
Confidence 88999999987543210000 00112346688999994 44554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++..+||++++|
T Consensus 146 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 146 -YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQHLGMMKHISDQVLVM 223 (267)
T ss_pred -CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-eCCHHHHHHhcCEEEEE
Confidence 3468999999999999999999999999999999999999999999999876445565554 56677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=355.91 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=166.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+ +..|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-FNRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccc-cccc
Confidence 3899999999999999999999999999999999999998 9999999999887643 4689999997654 5679
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. ....+...+ +.... -.+.. .-.|+...||.+|+. ..
T Consensus 425 i~~Ni~~~~~----~~~d~~i~~---------------------al~~~------~l~~~--i~~lp~gldt~i~~~-g~ 470 (588)
T PRK13657 425 IEDNIRVGRP----DATDEEMRA---------------------AAERA------QAHDF--IERKPDGYDTVVGER-GR 470 (588)
T ss_pred HHHHHhcCCC----CCCHHHHHH---------------------HHHHh------CHHHH--HHhCcccccchhcCC-CC
Confidence 9999988631 111111111 10000 01111 223677789999864 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+.+|++ +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999864 367777776665 5678899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=320.06 Aligned_cols=211 Identities=25% Similarity=0.328 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc----ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|.++.+.. .++.++|++|+..++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 35999999999999999999999999999999999998751 012899999999875431 246789999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.......... .+....+..+++.++|.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999886532210000 000112345678888865432222 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiiv-sH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIV-THNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999754 3555554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=317.48 Aligned_cols=212 Identities=23% Similarity=0.289 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|++++++ ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 48999999999999999999999999999999999998742 2479999999987421 1245699999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... . +....+..+++.++|.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------L------------------------EIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999886533211000 0 00112455778888754222111 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++ +|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiiv-sH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIV-SHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhcCEEEEE
Confidence 45678999999999999999999999999999999999999999999999865445666555 56677899999999999
Q ss_pred cC-----CeEEEecCHHHHH
Q 001957 399 SD-----GQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (991)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=315.97 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=163.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 59999999999999999999999999999999999987531 1379999999987531 1235689999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
+.+||.||+.++....+...+ + + ....++..++.+++. +..+
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~-~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~- 143 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDR-D---H-----------------------------LMEVAERSLRGAALWDEVKDRLK- 143 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCH-H---H-----------------------------HHHHHHHHHHHcCcchhhhhhhc-
Confidence 999999999886543211000 0 0 001123345555543 2233
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|...++.+++|+
T Consensus 144 ----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-sH~~~~~~~~~d~ 216 (252)
T PRK14272 144 ----TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIV-THNMHQAARVSDT 216 (252)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEE-eCCHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999753 4555554 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=316.90 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=163.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCC-c---cccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~-~---~~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.+++.. ..+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 359999999999999999999999999999999999987520 128999999998742 1 1245799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++....+...+ + .....+++.++.+++.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999987543211000 0 00112344566677643221111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++ +|...++.+++|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~-sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIV-THSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEE-ecCHHHHHHhCCEEEEE
Confidence 44568999999999999999999999999999999999999999999999854 4555555 45667899999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998775
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=319.00 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=164.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|++++ . +|+|.++|.++... ..++.++|++|+.
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~---~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI---EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCC---ceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 489999999999999999999999999999999999873 5 89999999987531 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++. ||+||+.+.....+...+ + .....++++++.++|.....+.
T Consensus 116 ~l~~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 161 (272)
T PRK14236 116 NPFPK-SIYENVVYGLRLQGINNR-----R----------------------------VLDEAVERSLRGAALWDEVKDR 161 (272)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCChhHHHH
Confidence 87775 999999987543321100 0 0011234567777775321111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++ +|..+++.+++|+|
T Consensus 162 ~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiiv-tH~~~~~~~~~d~i 237 (272)
T PRK14236 162 L-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIV-THNMQQAARVSDYT 237 (272)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEE-eCCHHHHHhhCCEE
Confidence 1 245678999999999999999999999999999999999999999999999863 4555554 56677889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 238 ~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 238 AFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEECCEEEecCCHHHHh
Confidence 999999999999988763
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=356.04 Aligned_cols=207 Identities=25% Similarity=0.356 Sum_probs=167.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.++ ..|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 404 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF-SDT 404 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeec-ccc
Confidence 4899999999999999999999999999999999999998 9999999999876543 46799999987655 569
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. ....+...+ ..+..+ .+ -....|++..||.+|+. ..
T Consensus 405 i~~Ni~~~~~----~~~~~~~~~---~~~~~~------------------------l~--~~i~~lp~gl~t~~~~~-g~ 450 (569)
T PRK10789 405 VANNIALGRP----DATQQEIEH---VARLAS------------------------VH--DDILRLPQGYDTEVGER-GV 450 (569)
T ss_pred HHHHHhcCCC----CCCHHHHHH---HHHHcC------------------------CH--HHHHhCcCcccceecCC-CC
Confidence 9999988531 111111110 000000 00 02345778889999864 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++ +....+|+|++|++|+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHGH 526 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999864 467888777765 4567799999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++.+|+++++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999998863
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=311.06 Aligned_cols=196 Identities=28% Similarity=0.389 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 46999999999999999999999999999999999999998 999999999875432 235799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+|+.||+.++........ . .+....++++++.+||.+..+..
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 138 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYY--- 138 (220)
T ss_pred CCCCHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcC---
Confidence 88999999998754321000 0 00112346688999998766644
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ . +.+++|+|++|
T Consensus 139 --~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l 214 (220)
T TIGR02982 139 --PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHM 214 (220)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEE
Confidence 4689999999999999999999999999999999999999999999998754467777776654 3 56899999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=313.96 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=161.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+.+ |....+|+|.++|.++... ..++.++|++|+..++
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 59999999999999999999999999999999999865 3111289999999987421 1235799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.+.....+.... + . ....+.+.++.+++........ +
T Consensus 99 ~-~tv~~nl~~~~~~~~~~~~-~---~-----------------------------~~~~~~~~l~~~~l~~~i~~~~-~ 143 (252)
T PRK14255 99 P-FSIYENVIYGLRLAGVKDK-A---V-----------------------------LDEAVETSLKQAAIWDEVKDHL-H 143 (252)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-H---H-----------------------------HHHHHHHHHHHcCCccchhhHH-h
Confidence 7 7999999987543321100 0 0 0011233455666532111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~-vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIIL-VTHSMHQASRISDKTAFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEE-EECCHHHHHHhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999854 455555 556677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|++.++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=320.02 Aligned_cols=213 Identities=28% Similarity=0.354 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCeeCCCccc---cceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-----~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~ 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 35999999999999999999999999999999999999874 1137999999998764322 346899999877
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
.++.+||+||+.++......... .. . .+....++.+++.+||++..++
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~--~~---~-------------------------~~~~~~~~~~l~~~~l~~~~~~-- 141 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAG--AL---T-------------------------HRDGEIAWQALALAGATALVGR-- 141 (272)
T ss_pred CCCCCcHHHHHhhcccccccccc--cC---C-------------------------HHHHHHHHHHHHHcCcHhhhcC--
Confidence 67789999999886321100000 00 0 0011234568889999766554
Q ss_pred cCcccCCCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
.+..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..++
T Consensus 142 ---~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviii-sH~~~~ 217 (272)
T PRK13547 142 ---DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAI-VHDPNL 217 (272)
T ss_pred ---CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHH
Confidence 45689999999999999999 59999999999999999999999999999865335565555 556678
Q ss_pred hHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 388 ~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
+.+++|++++|++|++++.|+++++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88999999999999999999988763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=314.44 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.++... ..++.++|++|+..++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 49999999999999999999999999999999999998741 1259999999987532 1246799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+. ||+||+.++....+.... + .....+++.++.++|.+..... .+
T Consensus 98 ~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~-~~ 142 (251)
T PRK14249 98 PK-SIFDNVAFGPRMLGTTAQ-----S----------------------------RLDEVVEKSLRQAALWDEVKDN-LH 142 (251)
T ss_pred cC-cHHHHHhhHHHhcCCChh-----h----------------------------HHHHHHHHHHHHhCCchhhhhH-hh
Confidence 74 999999987643321100 0 0001234456666664321111 23
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|...++.+++|++++|
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiliv-sh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIV-THNMQQAARASDWTGFL 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEE-eCCHHHHHhhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999873 35555555 56677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 220 LTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=304.37 Aligned_cols=170 Identities=38% Similarity=0.634 Sum_probs=148.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+. ++ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 459999999999999999999999999999999999863 66 999999999875 223467999999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.++..+ +
T Consensus 96 v~~~l~~~~~~--------------------------------------------------~------------------ 107 (192)
T cd03232 96 VREALRFSALL--------------------------------------------------R------------------ 107 (192)
T ss_pred HHHHHHHHHHH--------------------------------------------------h------------------
Confidence 99999874210 0
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++..++.+.+|++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 5999999999999999999999999999999999999999999999865 4667777666544357889999999999 9
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=315.35 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=163.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999987431 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++....+.... + .....++++++.++|....... -+
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDN-LD 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH-hc
Confidence 5 8999999886543221100 0 0011234567778884221001 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|...++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii-isH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIM-VTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEE-EECCHHHHHhhcCEEEEE
Confidence 44578999999999999999999999999999999999999999999999743 455555 456667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.14 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=163.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+.++. ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 5999999999999999999999999999999999987531 11289999999987543 1235689999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.|..+..+.... . .....++++++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK---------K------------------------TLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH---------H------------------------HHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 5999999987654321000 0 00112344567777643211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~-sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIV-THNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEE-EcCHHHHHhhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999854 4555555 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=316.31 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=163.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK--VSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~--~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|+|||||||||++|+|+++++.. .+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 499999999999999999999999999999999999875211 389999999987431 1235799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.++....+...+ .+....++++++.+|+....... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 7 8999999887543211000 00011234567777774211111 13
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.+++|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAI-VTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhcCeEEEE
Confidence 45678999999999999999999999999999999999999999999999753 455555 456778999999999999
Q ss_pred c-----CCeEEEecCHHHHH
Q 001957 399 S-----DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~-----~G~iv~~G~~~~~~ 413 (991)
+ +|+++++|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 8 59999999999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=347.83 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=169.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 24689999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|..... .+ ....++++++.+||++..|..+
T Consensus 102 tv~e~l~~~~~~~---------~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~----- 138 (510)
T PRK15439 102 SVKENILFGLPKR---------QA-----------------------------SMQKMKQLLAALGCQLDLDSSA----- 138 (510)
T ss_pred cHHHHhhcccccc---------hH-----------------------------HHHHHHHHHHHcCCCccccCCh-----
Confidence 9999998853210 00 0112456789999987776554
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+.+++.++||+|++|++|
T Consensus 139 ~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii-vtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVF-ISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999865 4555555 567778899999999999999
Q ss_pred eEEEecCHHHH
Q 001957 402 QIVYQGPRELV 412 (991)
Q Consensus 402 ~iv~~G~~~~~ 412 (991)
++++.|+.+++
T Consensus 217 ~i~~~g~~~~~ 227 (510)
T PRK15439 217 TIALSGKTADL 227 (510)
T ss_pred EEEEecChHHc
Confidence 99999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=309.55 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=159.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (991)
|||+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999999874211 2357999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+...... . .. ....++++++.+||++..+. .+.
T Consensus 92 ~~~~l~~~~~~~~---~--------~~-------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 130 (214)
T cd03297 92 VRENLAFGLKRKR---N--------RE-------------------------DRISVDELLDLLGLDHLLNR-----YPA 130 (214)
T ss_pred HHHHHHHHHhhCC---H--------HH-------------------------HHHHHHHHHHHcCCHhHhhc-----Ccc
Confidence 9999988643210 0 00 01124567889999766654 446
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV-THDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-ecCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999876435555554 566778889999999999999
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=353.77 Aligned_cols=207 Identities=26% Similarity=0.385 Sum_probs=165.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|+..++ ..|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccC-ccc
Confidence 4899999999999999999999999999999999999998 9999999999876542 46899999987655 589
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++||+.++.. ....+...+. .+.++ .++. ...++...||.+|+. ..
T Consensus 425 i~~Ni~~~~~----~~~~~~~~~a---~~~~~------------------------~~~~--i~~l~~g~~t~~~~~-~~ 470 (585)
T TIGR01192 425 IRENIRLGRE----GATDEEVYEA---AKAAA------------------------AHDF--ILKRSNGYDTLVGER-GN 470 (585)
T ss_pred HHHHHhcCCC----CCCHHHHHHH---HHHhC------------------------cHHH--HHhccccccchhcCC-CC
Confidence 9999988631 1111111110 00000 0111 224566778888854 66
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++. .++|+|++.|++ +....||+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~--~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL--STVRNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh--HHHHcCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999863 467777776654 3446799999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=337.17 Aligned_cols=210 Identities=29% Similarity=0.372 Sum_probs=178.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC--CCc---cccceEEEEecCC--
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEF---VPQRTAAYISQHD-- 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~--~~~---~~~~~~~yv~Q~d-- 235 (991)
+...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+. +.- ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4567999999999999999999999999999999999999998 99999999872 111 1235678888874
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+.|.+||+++|......++.... .+....++++|+..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHH----
Confidence 678999999999988765533210 1122357788999999842
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..++++++||||||||++|||||+.+|++|++|||||.||++.+.+|++.|+++.++. +.+.+.|+|+..-+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 4468899999999999999999999999999999999999999999999999997754 455666788999999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+||+.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998884
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.26 Aligned_cols=203 Identities=22% Similarity=0.357 Sum_probs=162.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ |+ +|+|.+||.++... ..++.++|++|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 49999999999999999999999999999999999854 36 99999999987532 1245799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----cc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VC 311 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (991)
.+++ .||+||+.|.....+.... . .....+.++++.+||. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~--------~-------------------------~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK--------K-------------------------QLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH--------H-------------------------HHHHHHHHHHHHhCCccchhhH
Confidence 7776 4999999987543221100 0 0011234566777763 22
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.+ ..+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIi-vsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMI-VTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEE-EeCCHHHHHHh
Confidence 23 44578999999999999999999999999999999999999999999999753 445554 55667788899
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|++++|++|++++.|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=315.39 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=159.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35999999999999999999999999999999999999998 999999999875432 235699999987665 57
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.+.... . ..+ .+...... ...+.+++.+ +++...+ .
T Consensus 91 tv~~nl~~~~~~--~--~~~---~~~~~~~~------------------------~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADPG--M--SME---RVIEAAKL------------------------AGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCCC--C--CHH---HHHHHHHH------------------------cCcHHHHHhCcccccchhh-----c
Confidence 999999875321 0 000 00000000 0012234444 4433333 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ .+.|+|++.|+ .+++ ..||++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~-~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHR-LSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCC-HHHH-HhCCEEEEEE
Confidence 457899999999999999999999999999999999999999999999985 36676666554 4566 4699999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=348.40 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=169.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++| + +|+|.++|+++..... ++.++||+|+..+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 599999999999999999999999999999999999986 6 9999999998865332 356999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+......+.. .. .+....++++++.+||++..|..+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 141 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-------DY------------------------DAMYLRAQKLLAQLKLDINPATPV--- 141 (506)
T ss_pred CCcHHHHhhhcccccccCCc-------CH------------------------HHHHHHHHHHHHHcCCCCCcccch---
Confidence 99999999987542210000 00 001123566889999987776544
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+..++.++||+|++|+
T Consensus 142 --~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~-~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 142 --GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIY-ISHKLNEVKAISDTICVIR 217 (506)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCcHHHHHHhcCEEEEEE
Confidence 58999999999999999999999999999999999999999999999865 4555555 5667788999999999999
Q ss_pred CCeEEEecCHHH
Q 001957 400 DGQIVYQGPREL 411 (991)
Q Consensus 400 ~G~iv~~G~~~~ 411 (991)
+|++++.|++++
T Consensus 218 ~G~i~~~~~~~~ 229 (506)
T PRK13549 218 DGRHIGTRPAAG 229 (506)
T ss_pred CCEEeeeccccc
Confidence 999999987554
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.54 Aligned_cols=210 Identities=23% Similarity=0.364 Sum_probs=185.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+++++|+||.++||+|++++|||||||||.+++|.|++.|+ +|+|++||.+++... +..+||.|.+.-+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 4567999999999999999999999999999999999999999 999999999987543 467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.|.|.|-++++|.... +.....+++|+.+++...... .+.
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~-----kIk 129 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTK-----KIK 129 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccc-----hHH
Confidence 99999999999886421 112345778999999876654 457
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+||-|.+|++.+-.+++++|++++||||+|||||.++..+-+.+.++.. .|.|+|.+ +|-++.+.++||++++|++|+
T Consensus 130 ~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifS-sH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFS-SHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEe-cchHHHHHHHhhhhheecCCc
Confidence 8999999999999999999999999999999999999999999999864 56666655 678999999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
.|.+|+.+++..-|.
T Consensus 208 ~V~~G~v~~ir~~~G 222 (300)
T COG4152 208 TVLYGTVEDIRRSFG 222 (300)
T ss_pred eEEeccHHHHHHhcC
Confidence 999999999987654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=314.28 Aligned_cols=206 Identities=24% Similarity=0.348 Sum_probs=164.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee-----CCCccc-------cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 4899999999999999999999999999999999999998 9999999986 543221 245899999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-
Q 001957 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (991)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (991)
++. +.+.+|+.||+.+......... . . .....++++++.+||.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~------~--------------------------~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGARH-Y------G--------------------------NIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcccc-h------H--------------------------HHHHHHHHHHHHcCCChh
Confidence 864 4566899999976432110000 0 0 00123456889999963
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++ .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+.+++.+
T Consensus 141 ~~~~-----~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~v-sH~~~~~~~ 214 (253)
T TIGR02323 141 RIDD-----LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-THDLGVARL 214 (253)
T ss_pred hhhc-----CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHH
Confidence 4444 4568999999999999999999999999999999999999999999999765445566655 566778889
Q ss_pred hcCeEEEecCCeEEEecCHHHHH
Q 001957 391 LFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=311.71 Aligned_cols=195 Identities=29% Similarity=0.413 Sum_probs=153.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|+..+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 35999999999999999999999999999999999999988 9999999998754322 357899999887766 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc-----
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV----- 316 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v----- 316 (991)
||.||+.+..... .. ..+.++++.++|.+..+..+
T Consensus 93 tv~e~l~~~~~~~----~~------------------------------------~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA----DD------------------------------------ERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC----CH------------------------------------HHHHHHHHHcCcHHHHHhccccccc
Confidence 9999998753110 00 01122344555544333321
Q ss_pred -cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 317 -GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 317 -g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-......|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ ...+ +++|++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHR-PSLL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCC-HHHH-HhCCEE
Confidence 0123568999999999999999999999999999999999999999999999754 3566666554 4455 799999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=325.06 Aligned_cols=256 Identities=27% Similarity=0.402 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCC
Q 001957 81 RQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (991)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (991)
++..-+|+-+.+.+.++ +.+++.++-|+..+..|++++-.
T Consensus 305 Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-------------------------------- 344 (580)
T COG4618 305 ARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-------------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC--------------------------------
Confidence 33444555544444333 34457788899999999998721
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCC
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNH 237 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~ 237 (991)
...++.+|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||-+++..++. +.+||.||+ .-
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-Ve 420 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VE 420 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ce
Confidence 112356999999999999999999999999999999999999998 99999999999876543 789999995 55
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++..||.|||. |+. ++.|.+...++....+ +++ =++.|++.+||.||
T Consensus 421 LF~GTIaeNIa---Rf~----------------------~~~d~~kIieAA~lAg------vHe--lIl~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIA---RFG----------------------EEADPEKVIEAARLAG------VHE--LILRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHH---hcc----------------------ccCCHHHHHHHHHHcC------hHH--HHHhCcCCccCccC
Confidence 66789999995 221 1223333333322211 111 26789999999999
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+. ..+||||||||+++||||-++|.+++||||-|.||..-...+.+.|.+..+ .|+|+|+..| ++.+...+|+|++
T Consensus 468 ~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaH--RPs~L~~~Dkilv 543 (580)
T COG4618 468 EG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAH--RPSALASVDKILV 543 (580)
T ss_pred CC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEec--CHHHHhhcceeee
Confidence 65 567999999999999999999999999999999999999999999998644 6677666654 5689999999999
Q ss_pred ecCCeEEEecCHHHHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLEFFA 417 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~ 417 (991)
|++|++-.+|+++|++....
T Consensus 544 l~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 544 LQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCChHHhcCCHHHHHHHhc
Confidence 99999999999999997654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=317.05 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|.. ..+|+|+++|+++... ..++.++|++|+..+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 469999999999999999999999999999999999997610 1289999999987531 124568999998776
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
+ .+||+||+.++....+.. .+ ....++++++.++|.+..+...
T Consensus 101 ~-~~tv~enl~~~~~~~~~~------~~-----------------------------~~~~~~~~l~~~~l~~~i~~~~- 143 (261)
T PRK14263 101 F-SMSIFDNVAFGLRLNRYK------GD-----------------------------LGDRVKHALQGAALWDEVKDKL- 143 (261)
T ss_pred c-cccHHHHHHHHHhhcCch------HH-----------------------------HHHHHHHHHHHcCCchhhhhhh-
Confidence 6 699999999876432110 00 0112455678888854332222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|+ ++|...++.+++|+|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~-isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIAL-VTHNMQQAIRVADTTAF 220 (261)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEE-EeCCHHHHHHhCCEEEE
Confidence 24567899999999999999999999999999999999999999999999984 3455544 56677789999999999
Q ss_pred ec--------CCeEEEecCHHHHH
Q 001957 398 LS--------DGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~--------~G~iv~~G~~~~~~ 413 (991)
|+ +|++++.|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 96 89999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.79 Aligned_cols=207 Identities=16% Similarity=0.296 Sum_probs=160.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|+|||||||||++|+|.++ |+ +|+|.+||+++... ..++.++|++|+.
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT---TGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC---ceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 48999999999999999999999999999999999986 45 99999999987421 1245799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.+..+.... . . ....+...++.+++.......
T Consensus 115 ~~~~-~tv~eni~~~~~~~~~~~~-----~---~-------------------------~~~~~~~~l~~~~~~~~l~~~ 160 (271)
T PRK14238 115 NPFP-KSIYDNVTYGPKIHGIKDK-----K---T-------------------------LDEIVEKSLRGAAIWDELKDR 160 (271)
T ss_pred cccc-ccHHHHHHHHHHhcCCCcH-----H---H-------------------------HHHHHHHHHHHcCCcchHHHH
Confidence 7776 5999999987543211000 0 0 001123345555432111111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.+++|++
T Consensus 161 ~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-vsH~~~~i~~~~d~i 236 (271)
T PRK14238 161 L-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIII-VTHNMQQAARISDKT 236 (271)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEE-EEcCHHHHHHhCCEE
Confidence 1 245678999999999999999999999999999999999999999999999753 455554 556677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 237 ~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 237 AFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=377.01 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=181.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+||++|++.+++.+|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LT 2028 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCC
Confidence 46999999999999999999999999999999999999998 99999999998532 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|+|.+.++.++.... +.+..++++|+.+||.+.+|..+ +
T Consensus 2029 v~E~L~l~a~l~g~~~~----------------------------------~~~~~v~~lLe~lgL~~~~dk~~-----~ 2069 (2272)
T TIGR01257 2029 GREHLYLYARLRGVPAE----------------------------------EIEKVANWSIQSLGLSLYADRLA-----G 2069 (2272)
T ss_pred HHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHhcCCh-----h
Confidence 99999998776543210 01123567899999988887665 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++.+ .++|+|+ ++|..+++..+||+|++|.+|+
T Consensus 2070 ~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIIL-tTH~mee~e~lcDrV~IL~~G~ 2147 (2272)
T TIGR01257 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVL-TSHSMEECEALCTRLAIMVKGA 2147 (2272)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 4555555 5677889999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
+++.|+++++...|.
T Consensus 2148 i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2148 FQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEECCHHHHHHHhC
Confidence 999999999988775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=317.21 Aligned_cols=231 Identities=21% Similarity=0.245 Sum_probs=175.0
Q ss_pred hcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCC
Q 001957 109 RVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188 (991)
Q Consensus 109 ~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsG 188 (991)
...+.++..-+.++|+++.+. .+.+|+|+|+.|++||+++|+||||
T Consensus 11 ~~~~~~~~~~l~~~nl~~~~~----------------------------------~~~~l~~vs~~i~~Ge~~~IiG~nG 56 (274)
T PRK14265 11 SATINPDHSVFEVEGVKVFYG----------------------------------GFLALVDVHLKIPAKKIIAFIGPSG 56 (274)
T ss_pred ccccCCCCceEEEeeEEEEeC----------------------------------CeEEEeeeeeEEcCCCEEEEECCCC
Confidence 344555566788899987641 1259999999999999999999999
Q ss_pred CcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhh
Q 001957 189 SGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE 261 (991)
Q Consensus 189 sGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 261 (991)
|||||||++|+|++++.. ..+|+|.++|+++... ..++.++|++|+..+++ .||.||+.++....+...
T Consensus 57 sGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~--- 132 (274)
T PRK14265 57 CGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG--- 132 (274)
T ss_pred CCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH---
Confidence 999999999999986310 1289999999987431 12467999999887776 499999988654321100
Q ss_pred hhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC
Q 001957 262 MLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341 (991)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~ 341 (991)
. ....++..++.++|....... -+..+..|||||||||+||++|+.+
T Consensus 133 ---~-----------------------------~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 133 ---N-----------------------------LDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred ---H-----------------------------HHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhhC
Confidence 0 001123345566653211111 1244578999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec---------CCeEEEecCHHHH
Q 001957 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS---------DGQIVYQGPRELV 412 (991)
Q Consensus 342 p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~---------~G~iv~~G~~~~~ 412 (991)
|++|||||||+|||..++..+.+.|+++.+ +.|+ +.++|+.+++.+++|++++|+ +|++++.|+++++
T Consensus 180 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~ti-ii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 180 PDVLLMDEPCSALDPISTRQVEELCLELKE--QYTI-IMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEE-EEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 999999999999999999999999999853 4454 445667789999999999997 8999999999887
Q ss_pred H
Q 001957 413 L 413 (991)
Q Consensus 413 ~ 413 (991)
.
T Consensus 257 ~ 257 (274)
T PRK14265 257 F 257 (274)
T ss_pred H
Confidence 4
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=317.01 Aligned_cols=206 Identities=24% Similarity=0.305 Sum_probs=168.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+. .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999999998 9999999998764322 35799999986 3
Q ss_pred CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (991)
+++..|+.|++.+..... ... . ......++++++.+||. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSLD----------K------------------------AERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhC
Confidence 567899999997754210 000 0 00112356678899996 34444
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++ +|...++.+++|+
T Consensus 148 -----~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv-sH~~~~i~~~~d~ 221 (268)
T PRK10419 148 -----RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI-THDLRLVERFCQR 221 (268)
T ss_pred -----CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE-ECCHHHHHHhCCE
Confidence 4568999999999999999999999999999999999999999999999865435555555 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|.+|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=314.38 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=158.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 35999999999999999999999999999999999999998 9999999998754322 356999999876665 7
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.+...... . .++....+. ......++.+ ++....+ .
T Consensus 92 tv~e~l~~~~~~~~----~---~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~-----~ 135 (238)
T cd03249 92 TIAENIRYGKPDAT----D---EEVEEAAKK------------------------ANIHDFIMSLPDGYDTLVG-----E 135 (238)
T ss_pred hHHHHhhccCCCCC----H---HHHHHHHHH------------------------cChHHHHHhhccccceeec-----c
Confidence 99999988532110 0 000000000 0011222232 3333322 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.| +.+++. .||++++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh-~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAH-RLSTIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeC-CHHHHh-hCCEEEEEE
Confidence 457899999999999999999999999999999999999999999999874 4666666655 555665 899999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999887654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=314.95 Aligned_cols=208 Identities=21% Similarity=0.291 Sum_probs=160.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCC--c---cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++.. . ..++.++|++|+..++
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 4899999999999999999999999999999999997520 0128999999998742 1 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.+.....+.. . +. ...++.+++.+++.+..+.. -+
T Consensus 104 ~-~tv~enl~~~~~~~~~~--~----~~-----------------------------~~~~~~~l~~~~l~~~l~~~-~~ 146 (264)
T PRK14243 104 P-KSIYDNIAYGARINGYK--G----DM-----------------------------DELVERSLRQAALWDEVKDK-LK 146 (264)
T ss_pred c-ccHHHHHHhhhhhcCcc--h----HH-----------------------------HHHHHHHHHHhCchhhHHHH-hc
Confidence 7 59999999875432110 0 00 01123345555553211111 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|+.+++.++||+|++|
T Consensus 147 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~-vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIII-VTHNMQQAARVSDMTAFF 223 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHHHHhCCEEEEE
Confidence 44568999999999999999999999999999999999999999999999854 455555 556778999999999999
Q ss_pred c---------CCeEEEecCHHHHH
Q 001957 399 S---------DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~---------~G~iv~~G~~~~~~ 413 (991)
+ +|++++.|+++++.
T Consensus 224 ~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 224 NVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ecccccccccCceEEEeCCHHHHH
Confidence 8 89999999998874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=316.33 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=162.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++... ..++.++|++|+.
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV---EGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC---ceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 49999999999999999999999999999999999986 45 89999999987431 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++. ||+||+.+.....+... . ....++++++.+||.+.....
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~i~~~ 173 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQGYDG------D-----------------------------IDERVEESLRRAALWDEVKDQ 173 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcCCcH------H-----------------------------HHHHHHHHHHHcCCCchhHHH
Confidence 77775 99999998764332100 0 011245677888875311001
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++ +.|+|+ ++|...++.+++|++
T Consensus 174 ~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii-~tH~~~~i~~~~dri 249 (285)
T PRK14254 174 L-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVI-VTHNMQQAARISDKT 249 (285)
T ss_pred H-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHhhcCEE
Confidence 1 244578999999999999999999999999999999999999999999999864 355555 456677889999997
Q ss_pred E-EecCCeEEEecCHHHHH
Q 001957 396 I-LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 i-lL~~G~iv~~G~~~~~~ 413 (991)
+ +|++|+++..|+.+++.
T Consensus 250 ~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 250 AVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEEeeCCEEEEeCCHHHHH
Confidence 5 67999999999987763
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=304.87 Aligned_cols=189 Identities=24% Similarity=0.316 Sum_probs=155.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 45999999999999999999999999999999999999998 999999999854221 23579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+.....+... . .....++++++.+||++..|+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 131 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSK----------K------------------------EKREKKKEALEKVGLNLKLKQK-- 131 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCchhhhcCC--
Confidence 889999999999754322100 0 0112345688899998776654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++ .. .+++|++++
T Consensus 132 ---~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~ 205 (206)
T TIGR03608 132 ---IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIE 205 (206)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEe
Confidence 457999999999999999999999999999999999999999999999865 466777766554 44 478999987
Q ss_pred e
Q 001957 398 L 398 (991)
Q Consensus 398 L 398 (991)
|
T Consensus 206 l 206 (206)
T TIGR03608 206 L 206 (206)
T ss_pred C
Confidence 6
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=351.94 Aligned_cols=207 Identities=25% Similarity=0.398 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++++|||.++|+||||||||||+++|+|+++|. +|+|.+||.++++... ++.++|++|++ ++++.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~-~lf~~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDP-VLFAA 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCC-ccccc
Confidence 35999999999999999999999999999999999999998 9999999999876543 36799999965 56678
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|++|||.++.. ....+...+ ..+..+ ..+.++ .+++..||.+|+. .
T Consensus 429 Ti~~Ni~~~~~----~~~~~~~~~---~l~~~~------------------------l~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGRP----DATDEEVEA---AARAAH------------------------AHEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCCC----CCCHHHHHH---HHHHcC------------------------cHHHHH--hCCCCCCceeCCC-C
Confidence 99999988531 001111100 000000 011222 3556678999864 5
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..||||||||+++||+++.+|++|+||||||+||..++..+++.|+++. .++|+|+..|++ +....+|+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 366777776654 556789999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999998875
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=308.06 Aligned_cols=197 Identities=26% Similarity=0.383 Sum_probs=171.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc------c-ccceEEEEecCCCCCCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V-PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~------~-~~~~~~yv~Q~d~~~~~l 241 (991)
=++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+. . .+|.+|||+|+-.+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3577888776799999999999999999999999999 99999999876321 1 258899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+-||.|+...- .....|++...||+.|..+ +++
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P 126 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYP 126 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCC
Confidence 9999999986421 0012466888999999886 667
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+..|++|+||||.+.||-....+++-.|.++.++. ..-|+.++|...|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCC
Confidence 8999999999999999999999999999999999999999999999998754 456667788899999999999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++...|+.+++.+
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999998863
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=308.57 Aligned_cols=198 Identities=25% Similarity=0.369 Sum_probs=159.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++ .|
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 96 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DT 96 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-cc
Confidence 5999999999999999999999999999999999999998 9999999998765432 357899999877776 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+||+.+.....+.. . ....++.+++.+||. ...++ .+
T Consensus 97 v~enl~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 135 (225)
T PRK10247 97 VYDNLIFPWQIRNQQ--P----------------------------------DPAIFLDDLERFALPDTILTK-----NI 135 (225)
T ss_pred HHHHHHhHHhhcCCC--h----------------------------------HHHHHHHHHHHcCCChHHhcC-----Cc
Confidence 999998864332110 0 001235678899995 34444 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-C
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~-~ 400 (991)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+..+.|+|++. |+.+++ ..+|++++|. +
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-h~~~~~-~~~d~i~~l~~~ 213 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVT-HDKDEI-NHADKVITLQPH 213 (225)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CChHHH-HhCCEEEEEecc
Confidence 689999999999999999999999999999999999999999999998764466666655 455566 4699999994 6
Q ss_pred CeEEEecCHH
Q 001957 401 GQIVYQGPRE 410 (991)
Q Consensus 401 G~iv~~G~~~ 410 (991)
+..+.+|.++
T Consensus 214 ~~~~~~~~~~ 223 (225)
T PRK10247 214 AGEMQEARYE 223 (225)
T ss_pred cchHhhhhhc
Confidence 7777777654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=317.23 Aligned_cols=198 Identities=24% Similarity=0.242 Sum_probs=158.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|||+.|++||+++|+|||||||||||++|+|+++ . +|+|.+||.++.... .++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999997 5 899999999886543 2467999999988776 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-------cccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-------VCADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 315 (991)
|+||+..... . ..+ + +.+.++.+||. ...|+.
T Consensus 93 v~~nl~~~~~----~-~~~---~---------------------------------~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK----W-SDE---E---------------------------------IWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC----C-CHH---H---------------------------------HHHHHHHcCCHHHHHhCcccccce
Confidence 9999964211 0 000 0 11223334443 445666
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+++ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++.. .++|+|++ +|..+.+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~i-sH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILS-EHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEE-ECCHHHHH-hCCEE
Confidence 654 456799999999999999999999999999999999999999999999863 35565555 55555555 59999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=351.09 Aligned_cols=207 Identities=24% Similarity=0.283 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|+. .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
+++.+||.|++.+.....+...+ . +....++++|+.+||+ ...+.
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~L~~~gL~~~~~~~- 459 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPG---------K------------------------AAAARVAWLLERVGLLPEHAWR- 459 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCH---------H------------------------HHHHHHHHHHHHcCCCHHHhhC-
Confidence 78899999999987543321000 0 0112356789999996 44554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+++|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++.+..+.| |+.++|+...+.++||+|
T Consensus 460 ----~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-vi~isHdl~~v~~~~dri 534 (623)
T PRK10261 460 ----YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA-YLFISHDMAVVERISHRV 534 (623)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEE
Confidence 456899999999999999999999999999999999999999999999987644555 445567888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=310.84 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=157.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.+||.++.... .++.++|++|+..+++. |
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 4899999999999999999999999999999999999998 999999999875432 23568999998876664 9
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.+..... ..+ ++..... ....+..++.+ |+....+ ..
T Consensus 93 v~~~~~~~~~~~----~~~---~~~~~~~------------------------~~~l~~~~~~~~~~~~~~~~-----~~ 136 (229)
T cd03254 93 IMENIRLGRPNA----TDE---EVIEAAK------------------------EAGAHDFIMKLPNGYDTVLG-----EN 136 (229)
T ss_pred HHHHHhccCCCC----CHH---HHHHHHH------------------------HhChHHHHHhCcccccCHhh-----cC
Confidence 999998753210 000 0000000 00012233333 3332222 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|+++|++ .++ ..+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~-~~~d~i~~l~~ 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRL-STI-KNADKILVLDD 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HHH-hhCCEEEEEeC
Confidence 67899999999999999999999999999999999999999999999974 366777766554 555 45999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+.+++.+
T Consensus 213 g~~~~~~~~~~~~~ 226 (229)
T cd03254 213 GKIIEEGTHDELLA 226 (229)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999877643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=312.66 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=165.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (991)
+|+|||+++++|++++|+||||||||||+++|+|+++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 4 8999999998865432 2468999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+..... ... . +....++++++.+||.+..++. ++.
T Consensus 87 ~~nl~~~~~~~-~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-TRT----------E------------------------AVASALNEVAEALGLDDKLGRS-----VNQ 126 (248)
T ss_pred HHHHHhcCccC-CCc----------H------------------------HHHHHHHHHHHHcCCHhHhcCC-----ccc
Confidence 99998863211 000 0 0012346688899998766654 468
Q ss_pred CChhHhHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 324 ISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~-------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMS-SHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999864 45555554 566778999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987663
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=308.87 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=160.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 5899999999999999999999999999999999999998 999999999875432 2356899999877665 79
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.+..... ..+ ++....+ ....+..++.+ ++.+..+ ..
T Consensus 92 v~enl~~~~~~~----~~~---~~~~~~~------------------------~~~~~~~~~~l~~~l~~~~~-----~~ 135 (234)
T cd03251 92 VAENIAYGRPGA----TRE---EVEEAAR------------------------AANAHEFIMELPEGYDTVIG-----ER 135 (234)
T ss_pred HHHHhhccCCCC----CHH---HHHHHHH------------------------HcCcHHHHHhcccCcceeec-----cC
Confidence 999998864211 000 0000000 00123345555 5544433 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+.|+|+++| ...++.. ||++++|++
T Consensus 136 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh-~~~~~~~-~d~v~~l~~ 211 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAH-RLSTIEN-ADRIVVLED 211 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEec-CHHHHhh-CCEEEEecC
Confidence 57899999999999999999999999999999999999999999999985 3566666655 4556655 999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (234)
T cd03251 212 GKIVERGTHEELLA 225 (234)
T ss_pred CeEeeeCCHHHHHH
Confidence 99999999887754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=309.83 Aligned_cols=207 Identities=22% Similarity=0.314 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--C---CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--P---TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~---~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ | + +|+|.+||.++... ..++.++|++|+.
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH---EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCC---ccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 49999999999999999999999999999999999864 2 5 89999999987532 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.....+...+ + .....+++.++.+||.......
T Consensus 94 ~~~~-~t~~~nl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~ 139 (250)
T PRK14266 94 NPFP-KSIFDNVAYGLRIHGEDDE-----D----------------------------FIEERVEESLKAAALWDEVKDK 139 (250)
T ss_pred ccCc-chHHHHHHhHHhhcCCCCH-----H----------------------------HHHHHHHHHHHHcCCchhHHHH
Confidence 7777 4999999887543211000 0 0011244567777775432112
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+.+|++
T Consensus 140 ~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiii~-sh~~~~~~~~~~~i 215 (250)
T PRK14266 140 L-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK--EDYTIVIV-THNMQQATRVSKYT 215 (250)
T ss_pred H-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-ECCHHHHHhhcCEE
Confidence 2 34567899999999999999999999999999999999999999999999984 35555555 55677899999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 216 SFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEEECCeEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=322.60 Aligned_cols=224 Identities=25% Similarity=0.334 Sum_probs=182.0
Q ss_pred ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 001957 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (991)
Q Consensus 116 ~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL 195 (991)
...|.|+++++.+.+ .++||+|+|+.+++|++++++||+|+||||++
T Consensus 260 ~g~v~F~~V~F~y~~---------------------------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~ 306 (497)
T COG5265 260 LGAVAFINVSFAYDP---------------------------------RRPILNGISFTIPLGKTVAIVGESGAGKSTIL 306 (497)
T ss_pred cceEEEEEEEeeccc---------------------------------cchhhcCccccccCccEEEEEeCCCCcHHHHH
Confidence 556999999988743 24599999999999999999999999999999
Q ss_pred HHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 196 LALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 196 ~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
++|-++++++ +|.|++||+++.... .++.+|.|||+ ..+++-|...|+.|+.- ....++.....+
T Consensus 307 rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQD-tvLFNDti~yni~ygr~----~at~eev~aaa~---- 374 (497)
T COG5265 307 RLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQD-TVLFNDTIAYNIKYGRP----DATAEEVGAAAE---- 374 (497)
T ss_pred HHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCccc-ceehhhhHHHHHhccCc----cccHHHHHHHHH----
Confidence 9999999999 999999999987543 35789999995 55667899999998742 111111111111
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs 352 (991)
..+. .--+..|++.+||.||.++.+ |||||||||+|||+++.+|+||++||.||
T Consensus 375 ------------------~aqi-------~~fi~~lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 375 ------------------AAQI-------HDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred ------------------Hhhh-------hHHHHhCchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 0111 112345899999999988776 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 353 GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
+||+.|..+|...|++.+. +.|+++.- |+..+.--+|.|++|++|+|++.|.+++++.
T Consensus 429 aldt~te~~iq~~l~~~~~--~rttlvia--hrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 429 ALDTHTEQAIQAALREVSA--GRTTLVIA--HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HhhhhHHHHHHHHHHHHhC--CCeEEEEe--ehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9999999999999999863 45555543 3556777899999999999999999999985
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=309.18 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=164.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCeeCCCccc---cc-eEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP---QR-TAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~~~---~~-~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+ ++|+ +|+|.++|.++..... .+ .++|++|++.+++
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 499999999999999999999999999999999998 4677 9999999998865432 12 4789999998999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+|+.|++.+......... +. ++.+. .+....++++++.+||. ...++.++
T Consensus 98 ~~~~~~~l~~~~~~~~~~~---------------~~-~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~- 149 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQ---------------GL-PELDP-----------LEFLEIINEKLKLVGMDPSFLSRNVN- 149 (252)
T ss_pred cccHHHHHHHhhhhhhccc---------------cc-ccccH-----------HHHHHHHHHHHHHcCCchhhhccccc-
Confidence 9999999987643210000 00 00000 00112345678899996 34444332
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vil 397 (991)
.+|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|+++ |..+.+... +|++++
T Consensus 150 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~t-H~~~~~~~~~~d~i~~ 224 (252)
T CHL00131 150 ---EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILIT-HYQRLLDYIKPDYVHV 224 (252)
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cCHHHHHhhhCCEEEE
Confidence 25999999999999999999999999999999999999999999999864 466666654 556666666 899999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|+++.+
T Consensus 225 l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 225 MQNGKIIKTGDAELA 239 (252)
T ss_pred EeCCEEEEecChhhh
Confidence 999999999998844
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=309.00 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=164.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC---CeeeEEEECCeeCCCcc---ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~---~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||+.+++|++++|+||||||||||+++|+|.++|+. .+.|+|.++|+++.... .++.++|++|++.++
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 459999999999999999999999999999999999998861 12355555556554322 246789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+.... .+....++++++.++|.+...... +
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 148 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEK---------------------------------REIKKIVEECLRKVGLWKEVYDRL-N 148 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCccchhhh-c
Confidence 999999999987542211000 001113456788888853211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ +.|+|+++ |...++.++||++++|
T Consensus 149 ~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvs-h~~~~~~~~~d~v~~l 225 (257)
T PRK14246 149 SPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVS-HNPQQVARVADYVAFL 225 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEE-CCHHHHHHhCCEEEEE
Confidence 34578999999999999999999999999999999999999999999998853 45666654 5566888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 226 ~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 226 YNGELVEWGSSNEIF 240 (257)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=315.38 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=163.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV 243 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|+..+. ...++
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 5999999999999999999999999999999999999998 999999999875432234699999986542 34578
Q ss_pred HHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+|++.++.... +.... +. ......++++++.+||.+..|+.+ .
T Consensus 98 ~~~i~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 141 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRR-------------------AK------------KRDRQIVTAALARVDMVEFRHRQI-----G 141 (272)
T ss_pred hhheecccccccccccC-------------------CC------------HHHHHHHHHHHHHcCChhHhcCCc-----c
Confidence 99987642100 00000 00 000123456788999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|...++.+++|+++++ +|+
T Consensus 142 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tvii-vsH~~~~~~~~~d~v~~~-~G~ 218 (272)
T PRK15056 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLV-STHNLGSVTEFCDYTVMV-KGT 218 (272)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 4556555 456677889999999888 899
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 219 i~~~g~~~~~ 228 (272)
T PRK15056 219 VLASGPTETT 228 (272)
T ss_pred EEeecCHHhc
Confidence 9999998875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=378.35 Aligned_cols=256 Identities=19% Similarity=0.218 Sum_probs=191.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC--CC-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (991)
+.....+||+.++.+.++|.- +..+....+ -| ..+|+|+|+++.+..
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~-----~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------- 1246 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEAT-----AIIENNRPVSGWPSRGSIKFEDVHLRYRP------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHhcCCcccc-----ccccCCCCCCCCCCCCcEEEEEEEEEECC-------------------------
Confidence 345566778777776554411 000000001 12 357999999999832
Q ss_pred hhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEe
Q 001957 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (991)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (991)
....+|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+
T Consensus 1247 -------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1247 -------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred -------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 1134999999999999999999999999999999999999998 9999999999987653 57899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|++.+| +.||||||+++.. ...+.+.++ .+.+++ +.. +-.++...
T Consensus 1317 Qdp~LF-~gTIr~NL~~~~~-----~sdeei~~a---l~~a~l------------------------~~~--I~~lp~GL 1361 (1495)
T PLN03232 1317 QSPVLF-SGTVRFNIDPFSE-----HNDADLWEA---LERAHI------------------------KDV--IDRNPFGL 1361 (1495)
T ss_pred CCCeee-CccHHHHcCCCCC-----CCHHHHHHH---HHHcCC------------------------HHH--HHhCcCCC
Confidence 987665 5699999987421 111111111 111110 111 22467788
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+..| .. ++...|
T Consensus 1362 dt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAH-Rl-~ti~~~ 1436 (1495)
T PLN03232 1362 DAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAH-RL-NTIIDC 1436 (1495)
T ss_pred CceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeC-CH-HHHHhC
Confidence 999986 445699999999999999999999999999999999999999999999863 3566665544 33 566679
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|++|++|+++++|+++++++
T Consensus 1437 DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1437 DKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999873
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=292.76 Aligned_cols=211 Identities=25% Similarity=0.360 Sum_probs=182.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIG 239 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~ 239 (991)
..+.||+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|+++.....+ +..+..-|+.....
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 4567999999999999999999999999999999999999998 99999999999765433 56677788877778
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+|-+.|+.--...|.- ..+....+++.++.|+|.+..| +
T Consensus 89 rlTV~dLv~FGRfPYSqGRl--------------------------------t~eD~~~I~~aieyl~L~~l~d-----r 131 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGRL--------------------------------TKEDRRIINEAIEYLHLEDLSD-----R 131 (252)
T ss_pred eeEHHHHhhcCCCcccCCCC--------------------------------chHHHHHHHHHHHHhcccchHH-----H
Confidence 89999999998643322210 0112235778899999988876 5
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..+||||||||.-||+.++.+.+.++||||.+.||-..+.++|+.||+++++.++|+|+.+ |+...+..++|.|+-|+
T Consensus 132 yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVl-HDINfAS~YsD~IVAlK 210 (252)
T COG4604 132 YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-HDINFASCYSDHIVALK 210 (252)
T ss_pred hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEE-ecccHHHhhhhheeeec
Confidence 56789999999999999999999999999999999999999999999999999888888875 57889999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++.+|+++++.+
T Consensus 211 ~G~vv~~G~~~eii~ 225 (252)
T COG4604 211 NGKVVKQGSPDEIIQ 225 (252)
T ss_pred CCEEEecCCHHHhcC
Confidence 999999999999863
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=377.81 Aligned_cols=255 Identities=20% Similarity=0.231 Sum_probs=192.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC---C-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---P-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (991)
+.....+||+.++.+.++|.- ...+. +.++ | ..+|+|+|+++.+..
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~-----~~~~~-~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAP-----LVIEN-NRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCccc-----ccccC-CCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 455666788877776554410 00000 1111 2 357999999999832
Q ss_pred hhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEE
Q 001957 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (991)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv 231 (991)
....+|+|||++|+|||.+||+|+||||||||+++|.|+++|+ +|+|++||.++.+... ++.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987654 4789999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
+|++.+| ..||||||.++.. ...+.+.++.+ .+++ +.. +..|+..
T Consensus 1319 pQdp~LF-~GTIreNLd~~~~-----~tdeei~~Al~---~a~l------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLF-SGTVRFNLDPFNE-----HNDADLWESLE---RAHL------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCccc-cccHHHHhCcCCC-----CCHHHHHHHHH---HcCc------------------------HHH--HHhCccc
Confidence 9977655 5699999987521 11111111111 1100 111 2346778
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.||.||+ ....||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+.. |.. ++...
T Consensus 1364 Ldt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IA-HRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIA-HRL-NTIID 1438 (1622)
T ss_pred cCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEe-CCh-HHHHh
Confidence 8999986 445799999999999999999999999999999999999999999999864 355665554 433 56667
Q ss_pred cCeEEEecCCeEEEecCHHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999974
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.54 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=162.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCC----c---cccceEEEEecCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE----F---VPQRTAAYISQHDN 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~----~---~~~~~~~yv~Q~d~ 236 (991)
.+|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. . ..++.++|++|+..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 59999999999999999999999999999999999987510 128999999987631 1 12457899999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++. ||+||+.++....+...+ .. .+..++..++.+++........
T Consensus 110 ~~~~-tv~eni~~~~~~~~~~~~-----~~----------------------------~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 110 PFPK-SIFENVAYGLRIRGVKRR-----SI----------------------------LEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred CCcc-hHHHHHHhHHHHcCCChH-----HH----------------------------HHHHHHHHHHHcCCchhhhHHH
Confidence 8875 999999987543221100 00 0012334555666532111111
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|+ ++|..+++.+++|+++
T Consensus 156 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiii-vth~~~~~~~~~d~i~ 231 (265)
T PRK14252 156 -GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILI-VTHNMQQAARVSDYTA 231 (265)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEE-EecCHHHHHHhCCEEE
Confidence 244568999999999999999999999999999999999999999999999853 445544 5677788999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|+++..|+.+++.
T Consensus 232 ~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 232 YMYMGELIEFGATDTIF 248 (265)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=304.45 Aligned_cols=193 Identities=26% Similarity=0.305 Sum_probs=156.2
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
...+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... .+...+.+.+
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~---------~~~~~~~~~~ 99 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLL---------GLGGGFNPEL 99 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchhh---------cccccCCCCC
Confidence 34467999999999999999999999999999999999999998 99999999875321 1123445789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.+.....+... . +....++++++.+||++..++.+
T Consensus 100 tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 140 (224)
T cd03220 100 TGRENIYLNGRLLGLSR----------K------------------------EIDEKIDEIIEFSELGDFIDLPV----- 140 (224)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCh-----
Confidence 99999988754321100 0 00112456788899988777655
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|...++.+++|++++|++|
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G 218 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVIL-VSHDPSSIKRLCDRALVLEKG 218 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999865 3555555 456677888999999999999
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 219 ~i~~~g 224 (224)
T cd03220 219 KIRFDG 224 (224)
T ss_pred EEEecC
Confidence 998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=299.53 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=149.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|.. +|+ +|+|.+||+++..... ++.++|++|+..+++
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 5999999999999999999999999999999999994 677 9999999999865432 235999999888888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|+++++. .
T Consensus 91 ~~~~~~~l~----------------------------------------------------------------------~ 100 (200)
T cd03217 91 GVKNADFLR----------------------------------------------------------------------Y 100 (200)
T ss_pred CccHHHHHh----------------------------------------------------------------------h
Confidence 888776550 0
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh-hcCeEEEe
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-LFDDIILL 398 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~-lfD~vilL 398 (991)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ .+.+.+ ++|++++|
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~-~~~~~~~~~d~i~~l 178 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHY-QRLLDYIKPDRVHVL 178 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhhCCEEEEE
Confidence 0136999999999999999999999999999999999999999999999864 46677776555 456766 79999999
Q ss_pred cCCeEEEecCHHHHHHHHHhcC
Q 001957 399 SDGQIVYQGPRELVLEFFASMG 420 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G 420 (991)
++|++++.|+.+ +.++|.+.|
T Consensus 179 ~~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 179 YDGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred ECCEEEEEccHH-HHhhhcccc
Confidence 999999999555 555554443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=300.21 Aligned_cols=188 Identities=25% Similarity=0.350 Sum_probs=158.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.....++.++|++|++.+++.+|++|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999998865333456899999988888899999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.....+.. ....++.+++.++|++..++.+ ..||
T Consensus 102 ~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T PRK13543 102 NLHFLCGLHGRR-------------------------------------AKQMPGSALAIVGLAGYEDTLV-----RQLS 139 (214)
T ss_pred HHHHHHHhcCCc-------------------------------------HHHHHHHHHHHcCChhhccCCh-----hhCC
Confidence 998865432110 0012345788899987766554 5799
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+..++.+++|++++|+.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALV-TTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999999999998865 4555555 56677899999999999863
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=305.91 Aligned_cols=219 Identities=24% Similarity=0.310 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|.++....+ ++.++|++|+..+++
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 4999999999999999999999999999999999995 577 9999999998754332 245899999988888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (991)
.+|+.+++.+...... .. +.. ...+ .......++.+++.++|+. ..++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~---------~~-~~~--------~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (248)
T PRK09580 92 GVSNQFFLQTALNAVR---------SY-RGQ--------EPLD---------RFDFQDLMEEKIALLKMPEDLLTRSVN- 143 (248)
T ss_pred chhHHHHHHHhhhhhh---------cc-ccc--------ccch---------HHHHHHHHHHHHHHcCCChhhcccCCC-
Confidence 8888777654321100 00 000 0000 0011224567888999953 3443321
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vil 397 (991)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .++|+|+++ |....+... +|+|++
T Consensus 144 ---~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~s-H~~~~~~~~~~d~i~~ 218 (248)
T PRK09580 144 ---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVT-HYQRILDYIKPDYVHV 218 (248)
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CCHHHHHhhhCCEEEE
Confidence 37999999999999999999999999999999999999999999999864 456666655 455566666 899999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCC
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGF 421 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~ 421 (991)
|++|++++.|+.+.+ +.++..++
T Consensus 219 l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 219 LYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999999998865 34444443
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=304.02 Aligned_cols=198 Identities=21% Similarity=0.247 Sum_probs=163.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
..+.+|+|+|++|+||++++|+|||||||||||++|+|+++|+ +|+|.++|+ ++++.|+..+.+.+|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~----------~~~~~~~~~~~~~~t 101 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE----------VSVIAISAGLSGQLT 101 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE----------EeEEecccCCCCCCc
Confidence 4467999999999999999999999999999999999999998 999999985 356677776778899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... + +....++.+++.++|.+..+.. ++
T Consensus 102 v~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 102 GIENIEFKMLCMGFKR--K--------------------------------EIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred HHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 9999987654322110 0 0011235567788887766544 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .++|+|++ +|...++.+++|+|++|++|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIii-sH~~~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFV-SHNLGQVRQFCTKIAWIEGGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHHcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999854 45566655 556778889999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 999999988764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=314.71 Aligned_cols=219 Identities=24% Similarity=0.350 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCcc-----ccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++.... .++.++|++|+.
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~---~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI---DGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999985 45 999999999875321 235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.+.++.... ...... .+. . . .......++.+++.++|....++.
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~-~~~~~~------~~~--~-~-----------~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINT-GLLARL------LGR--D-D-----------KDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccc-cccccc------ccc--C-c-----------hHHHHHHHHHHHHHcCCchhhhHH
Confidence 7776 5999999987543211000 000000 000 0 0 000112356678888885433333
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++ +.|+|+ ++|....+.+++|++
T Consensus 194 ~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiii-vtH~~~~i~~~~d~i 269 (305)
T PRK14264 194 L-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVV-VTHNMQQAARISDQT 269 (305)
T ss_pred h-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEE-EEcCHHHHHHhcCEE
Confidence 2 355678999999999999999999999999999999999999999999999864 355555 456677889999997
Q ss_pred -EEecCCeEEEecCHHHHH
Q 001957 396 -ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 -ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++++|+++++.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEecCCEEEEeCCHHHHH
Confidence 578999999999988764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=343.67 Aligned_cols=226 Identities=25% Similarity=0.375 Sum_probs=166.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcC--CCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVG--IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
++....++|+.++.+.+++. .+...... ......++.|+|+++.++.
T Consensus 298 ~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-------------------------- 346 (529)
T TIGR02868 298 TRVRAAAERIEEVTGAKGPR-----PEGVVPAAGALGLGKPTLELRDLSFGYPG-------------------------- 346 (529)
T ss_pred HHHHHHHHHHHHHhcCCCCc-----CCCCCCCCcccCCCCceEEEEEEEEecCC--------------------------
Confidence 45566677777776554430 00000000 1112346999999998731
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
+ ..+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++. . ++.++||+|
T Consensus 347 ----~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q 415 (529)
T TIGR02868 347 ----S---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQ 415 (529)
T ss_pred ----C---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEcc
Confidence 1 13999999999999999999999999999999999999998 99999999998876 4 368999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++. +++.||+|||.++.. ....+...+ +....+ .++ .+..|++..|
T Consensus 416 ~~~-lF~~TI~eNI~~g~~----~~~~e~i~~---------------------al~~a~------l~~--~i~~lp~Gld 461 (529)
T TIGR02868 416 DAH-LFDTTVRDNLRLGRP----DATDEELWA---------------------ALERVG------LAD--WLRSLPDGLD 461 (529)
T ss_pred Ccc-cccccHHHHHhccCC----CCCHHHHHH---------------------HHHHcC------CHH--HHHhCccccc
Confidence 765 556799999998631 111111111 111000 011 1335788899
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
|.||+.. ..||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|+..|+
T Consensus 462 T~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 462 TVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHH 528 (529)
T ss_pred chhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecC
Confidence 9999744 5699999999999999999999999999999999999999999999863 46777777665
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=297.27 Aligned_cols=186 Identities=24% Similarity=0.316 Sum_probs=154.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 5999999999999999999999999999999999999998 999999999875422 24578999999888899999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. .....++.+++.+||.+..|+. +..
T Consensus 92 ~e~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~-----~~~ 129 (204)
T PRK13538 92 LENLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVP-----VRQ 129 (204)
T ss_pred HHHHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCC-----hhh
Confidence 9999987543210 0011346688999998766654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|...++....++++++
T Consensus 130 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILT-THQDLPVASDKVRKLRL 202 (204)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecChhhhccCCceEEec
Confidence 999999999999999999999999999999999999999999999864 45666665 45566777777788777
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=275.39 Aligned_cols=202 Identities=28% Similarity=0.352 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Cc-------cccceEEEEecCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EF-------VPQRTAAYISQHD 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~-------~~~~~~~yv~Q~d 235 (991)
.++|.||++..+.|+.+.++||||+|||||++.|.=+.-|. +|+..+.|...+ +. ..++.+|+|+|+-
T Consensus 15 ~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 45899999999999999999999999999999999888888 999999886543 21 1246789999999
Q ss_pred CCCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 NHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.++|.+||.|||--+. +..|.. ..++.....++|+.|.|.+.+|
T Consensus 92 ~lwphltv~enlieap~kv~gl~----------------------------------~~qa~~~a~ellkrlrl~~~ad- 136 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLS----------------------------------KDQALARAEKLLKRLRLKPYAD- 136 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCC----------------------------------HHHHHHHHHHHHHHhccccccc-
Confidence 9999999999997653 122211 1112234567899999999887
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+++-.|||||+|||+|||||+..|.+|++||||++||+.-+.++++.+++++. .|.|-||. +|..+-+...+.+
T Consensus 137 ----r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqviv-thev~va~k~as~ 210 (242)
T COG4161 137 ----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIV-THEVEVARKTASR 210 (242)
T ss_pred ----cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEE-EeehhHHHhhhhh
Confidence 45567999999999999999999999999999999999999999999999975 56666665 4667788889999
Q ss_pred EEEecCCeEEEecCHH
Q 001957 395 IILLSDGQIVYQGPRE 410 (991)
Q Consensus 395 vilL~~G~iv~~G~~~ 410 (991)
|+.|.+|+||++|+.+
T Consensus 211 vvyme~g~ive~g~a~ 226 (242)
T COG4161 211 VVYMENGHIVEQGDAS 226 (242)
T ss_pred eEeeecCeeEeecchh
Confidence 9999999999999876
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=341.09 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++ + +|+|+++|+++..... ++.++||+|+. .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 569999999999999999999999999999999999985 5 8999999998754321 34689999985 4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
+++.+||+||+.++....+.... .. +....++++++.+||+ ...+.
T Consensus 375 l~~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~- 421 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQPTLS--------AA------------------------QREQQVIAVMEEVGLDPETRHR- 421 (529)
T ss_pred cCCcccHHHHHHHHHHhccccCC--------hH------------------------HHHHHHHHHHHHcCCCHHHHhc-
Confidence 78889999999987532210000 00 0112345688999996 35554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.++||+|
T Consensus 422 ----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-vsHd~~~~~~~~d~i 496 (529)
T PRK15134 422 ----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF-ISHDLHVVRALCHQV 496 (529)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhcCeE
Confidence 446899999999999999999999999999999999999999999999987644555555 567888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++..|+++++.
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999988774
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=306.36 Aligned_cols=189 Identities=24% Similarity=0.339 Sum_probs=156.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCC--CCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE--MTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~--lTV 243 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|+..+++. .|+
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK--------LRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc--------cCEEEeccccccccccChhH
Confidence 4999999999999999999999999999999999999998 999999872 359999998776665 477
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++++.+... . . ...+..+++.+||.+..|+. +..
T Consensus 87 ~~~~~~~~~---~--~------------------------------------~~~~~~~l~~~gl~~~~~~~-----~~~ 120 (251)
T PRK09544 87 NRFLRLRPG---T--K------------------------------------KEDILPALKRVQAGHLIDAP-----MQK 120 (251)
T ss_pred HHHHhcccc---c--c------------------------------------HHHHHHHHHHcCChHHHhCC-----hhh
Confidence 777653210 0 0 01134578889998766654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|+.+++.+.+|+|++|+ |++
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii-vsH~~~~i~~~~d~i~~l~-~~i 198 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM-VSHDLHLVMAKTDEVLCLN-HHI 198 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHHhCCEEEEEC-Cce
Confidence 99999999999999999999999999999999999999999999986533555555 5667778999999999996 479
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 199 ~~~g~~~~~~ 208 (251)
T PRK09544 199 CCSGTPEVVS 208 (251)
T ss_pred EeeCCHHHHh
Confidence 9999988764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=303.33 Aligned_cols=193 Identities=26% Similarity=0.322 Sum_probs=150.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..++ ..|
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~t 93 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGT 93 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cch
Confidence 5999999999999999999999999999999999999998 999999999875432 246799999987755 469
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-------ccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-------CADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt~ 315 (991)
|+||+.+.... ..+ + +.+.++.++|.+ ..++.
T Consensus 94 v~enl~~~~~~-----~~~---~---------------------------------~~~~~~~~~l~~~~~~l~~~l~~~ 132 (221)
T cd03244 94 IRSNLDPFGEY-----SDE---E---------------------------------LWQALERVGLKEFVESLPGGLDTV 132 (221)
T ss_pred HHHHhCcCCCC-----CHH---H---------------------------------HHHHHHHhCcHHHHHhcccccccc
Confidence 99999753210 000 0 011122222221 22233
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |...++. .+|++
T Consensus 133 ~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~s-h~~~~~~-~~d~i 207 (221)
T cd03244 133 V-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIA-HRLDTII-DSDRI 207 (221)
T ss_pred c-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEe-CCHHHHh-hCCEE
Confidence 2 245678999999999999999999999999999999999999999999998743 45666555 4555665 49999
Q ss_pred EEecCCeEEEecC
Q 001957 396 ILLSDGQIVYQGP 408 (991)
Q Consensus 396 ilL~~G~iv~~G~ 408 (991)
++|++|++++.|+
T Consensus 208 ~~l~~g~~~~~~~ 220 (221)
T cd03244 208 LVLDKGRVVEFDS 220 (221)
T ss_pred EEEECCeEEecCC
Confidence 9999999999876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=338.07 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|||+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999998 9999999998754321 3569999999888899
Q ss_pred CCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+||+||+.++.. ..+.... . .+....++++++.+||.+..+..
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 131 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------Q------------------------DKMYRDTKAIFDELDIDIDPRAK---- 131 (491)
T ss_pred CCHHHHhhcccccccccccC--------H------------------------HHHHHHHHHHHHHcCCCCCccCc----
Confidence 999999988642 1110000 0 00012356688999998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+.+++.++||+|++|+
T Consensus 132 -~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 132 -VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVY-ISHKMEEIFQLCDEITILR 208 (491)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCHHHHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999865 4555555 5567788999999999999
Q ss_pred CCeEEEecCHHH
Q 001957 400 DGQIVYQGPREL 411 (991)
Q Consensus 400 ~G~iv~~G~~~~ 411 (991)
+|+++..|++++
T Consensus 209 ~G~i~~~~~~~~ 220 (491)
T PRK10982 209 DGQWIATQPLAG 220 (491)
T ss_pred CCEEEeecChhh
Confidence 999999988654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=290.32 Aligned_cols=158 Identities=31% Similarity=0.485 Sum_probs=139.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.+||+++... ..++.++|++|+..+++.+||
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 4999999999999999999999999999999999999998 99999999987543 224679999999888888888
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.
T Consensus 91 ~~~~~--------------------------------------------------------------------------- 95 (173)
T cd03230 91 RENLK--------------------------------------------------------------------------- 95 (173)
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 77630
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +.|+|++ +|+..++.+++|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLS-SHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999998763 5555554 5666788889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=296.70 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=154.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|++|++|++++|+|+||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 35899999999999999999999999999999999999998 99999999987532 12467999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..... ....++++++.+||++..++. +.
T Consensus 90 v~e~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 124 (201)
T cd03231 90 VLENLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRP-----VA 124 (201)
T ss_pred HHHHHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCc-----hh
Confidence 999998853110 001245678889998766654 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.| ...+....+|+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH-~~~~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTH-QDLGLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec-CchhhhhccceeEec
Confidence 7999999999999999999999999999999999999999999998765 4667666554 555777799999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=337.49 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-Cee---CCCcc------ccceEEEEecC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN-GHD---MDEFV------PQRTAAYISQH 234 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~---~~~~~------~~~~~~yv~Q~ 234 (991)
+.+|+|+||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++ |.+ +.... .++.++|++|+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 46999999999999999999999999999999999999998 9999996 642 22211 13468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc----
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---- 310 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---- 310 (991)
..+++.+||+||+.+...+. .. +. .....++.+++.+||.+
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~-~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~ 418 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLE-LP----------DE------------------------LARMKAVITLKMVGFDEEKAE 418 (520)
T ss_pred cccCCCCcHHHHHHHHHHcC-CC----------HH------------------------HHHHHHHHHHHhCCCCCccch
Confidence 88889999999998864321 00 00 00113456788999975
Q ss_pred -cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 311 -CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
..+ ..+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.
T Consensus 419 ~~~~-----~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vsHd~~~~~ 492 (520)
T TIGR03269 419 EILD-----KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII-VSHDMDFVL 492 (520)
T ss_pred hhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE-EeCCHHHHH
Confidence 234 4456899999999999999999999999999999999999999999999987644555555 567778899
Q ss_pred hhcCeEEEecCCeEEEecCHHHHHH
Q 001957 390 DLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
++||++++|++|++++.|+++++.+
T Consensus 493 ~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 493 DVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999887643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=305.51 Aligned_cols=206 Identities=29% Similarity=0.386 Sum_probs=156.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|+..++ ..|
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 90 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDT 90 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cch
Confidence 4899999999999999999999999999999999999998 999999999876432 235689999987666 579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..... ..+ ++...... ...+..++.+ +...++.+. +.++
T Consensus 91 v~~nl~~~~~~~----~~~---~~~~~~~~------------------------~~l~~~~~~l--~~~~~~~~~-~~~~ 136 (236)
T cd03253 91 IGYNIRYGRPDA----TDE---EVIEAAKA------------------------AQIHDKIMRF--PDGYDTIVG-ERGL 136 (236)
T ss_pred HHHHHhhcCCCC----CHH---HHHHHHHH------------------------cCcHHHHHhc--cccccchhh-cCCC
Confidence 999998863210 000 00000000 0011222222 222333332 3467
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.| ...++. .+|++++|++|+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh-~~~~~~-~~d~~~~l~~g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAH-RLSTIV-NADKIIVLKDGR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcC-CHHHHH-hCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999998753 566666654 555664 499999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
+++.|+.+++.
T Consensus 213 i~~~~~~~~~~ 223 (236)
T cd03253 213 IVERGTHEELL 223 (236)
T ss_pred EEeeCCHHHHh
Confidence 99999887664
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=306.73 Aligned_cols=204 Identities=26% Similarity=0.309 Sum_probs=156.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|+||++++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++ .|
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~t 110 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GS 110 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cH
Confidence 4999999999999999999999999999999999999998 999999999886533 2467899999886665 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+...... .. +...++. . ....+..++.+ |++ +.++ ..
T Consensus 111 v~~nl~~~~~~----~~-~~~~~~l---------------------~------~~~l~~~~~~~~~~l~----~~~~-~~ 153 (257)
T cd03288 111 IRFNLDPECKC----TD-DRLWEAL---------------------E------IAQLKNMVKSLPGGLD----AVVT-EG 153 (257)
T ss_pred HHHhcCcCCCC----CH-HHHHHHH---------------------H------HhCcHHHHhhcccccC----cEec-cC
Confidence 99998542110 00 0000000 0 00112234443 443 3333 35
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.| ..+++.. +|+|++|++
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh-~~~~~~~-~dri~~l~~ 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAH-RVSTILD-ADLVLVLSR 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEec-ChHHHHh-CCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999863 3566666655 4556654 999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+++++.+
T Consensus 230 G~i~~~g~~~~~~~ 243 (257)
T cd03288 230 GILVECDTPENLLA 243 (257)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999999887753
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=294.77 Aligned_cols=177 Identities=28% Similarity=0.351 Sum_probs=143.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCC-CC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDN-HI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~-~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+.. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 45999999999999999999999999999999999999998 99999999987421 12356899999863 44
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..|+.
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 124 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSE----------A------------------------EVERRVREALTAVGASGLRERP--- 124 (190)
T ss_pred ccccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCchhhhhCC---
Confidence 56899999998754321100 0 0111346678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecC
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~ 384 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++
T Consensus 125 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 125 --THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 468999999999999999999999999999999999999999999999865 466777766554
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=294.41 Aligned_cols=183 Identities=27% Similarity=0.361 Sum_probs=150.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 2357899999988888899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+. ....++++++.+||.+..++.+ .
T Consensus 90 v~~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 126 (198)
T TIGR01189 90 ALENLHFWAAIHGG--------------------------------------AQRTIEDALAAVGLTGFEDLPA-----A 126 (198)
T ss_pred HHHHHHHHHHHcCC--------------------------------------cHHHHHHHHHHcCCHHHhcCCh-----h
Confidence 99999886432110 0012355788899987766554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.|||||||||+||++++.+|++++|||||+|||..++..+.+.|+++++ .+.|+|+++|++.+ -.+|+++.
T Consensus 127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 7999999999999999999999999999999999999999999999865 57788888777642 23466554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=372.68 Aligned_cols=256 Identities=17% Similarity=0.198 Sum_probs=192.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC---CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID---LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (991)
+.....++|+.++.+.++|.- ...+....+ ++..+|+|+|+++.+...
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~-----~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------------------------ 1297 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAP-----WQIQETAPPSGWPPRGRVEFRNYCLRYRED------------------------ 1297 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcc-----ccccCCCCCCCCCCCCcEEEEEEEEEeCCC------------------------
Confidence 456667888888876554410 000000111 224679999999988421
Q ss_pred hhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEe
Q 001957 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (991)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (991)
...+|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|++||.++.+... ++.++||+
T Consensus 1298 --------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1298 --------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred --------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEEC
Confidence 124999999999999999999999999999999999999998 9999999999987654 57899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|++.+|. .||||||+.... ...+.+.++ .+.+++ +.. +-.|++..
T Consensus 1367 Qdp~LF~-gTIr~NLdp~~~-----~sdeei~~a---l~~a~l------------------------~~~--I~~lp~GL 1411 (1522)
T TIGR00957 1367 QDPVLFS-GSLRMNLDPFSQ-----YSDEEVWWA---LELAHL------------------------KTF--VSALPDKL 1411 (1522)
T ss_pred CCCcccC-ccHHHHcCcccC-----CCHHHHHHH---HHHcCc------------------------HHH--HhhCccCC
Confidence 9776665 699999973211 111111111 111110 111 22456788
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+..|+ .++...+
T Consensus 1412 dt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHR--l~ti~~~ 1486 (1522)
T TIGR00957 1412 DHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHR--LNTIMDY 1486 (1522)
T ss_pred CceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecC--HHHHHhC
Confidence 999986 445699999999999999999999999999999999999999999999854 35666655443 3667789
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|++|++|+|+++|+++++++
T Consensus 1487 DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1487 TRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=279.68 Aligned_cols=209 Identities=25% Similarity=0.358 Sum_probs=175.6
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c---------
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--------- 224 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~--------- 224 (991)
+.+...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|+ .|.|.+||..+.-.. +
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 345677999999999999999999999999999999999999998 999999998763211 0
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHH
Q 001957 225 QRTAAYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (991)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (991)
+...++|+|+.+++..|||.||+.-+.. ..|.. + .++....+.+|
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~----------k------------------------~ea~e~Ae~~L 137 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS----------K------------------------AEAIERAEKYL 137 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCC----------H------------------------HHHHHHHHHHH
Confidence 1245899999999999999999876531 11111 0 11223456789
Q ss_pred HHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
...||.+..| .++..|||||+||++|||||+.+|+++++|||||+||+.---++++.+++++. .|+|.++. +|
T Consensus 138 ~kVGi~ek~~-----~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~V-TH 210 (256)
T COG4598 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVV-TH 210 (256)
T ss_pred HHhCchhhhh-----cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEE-ee
Confidence 9999998887 45678999999999999999999999999999999999999999999999997 56676665 57
Q ss_pred CCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 384 PAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
.+..+.+...+|+.|++|.|-++||++++.
T Consensus 211 EM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ehhHHHhhhhheEEeecceecccCChHHHh
Confidence 888999999999999999999999999883
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=299.33 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=152.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC--Ce--eCCCccc-------cceEEEEec
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN--GH--DMDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n--G~--~~~~~~~-------~~~~~yv~Q 233 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++ |. ++..... ++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999999998 9999998 42 4332211 246899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-c
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-A 312 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~ 312 (991)
+..+++.+||+|++.+.....+... . .....+..+++.+||.+. .
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPR----------E------------------------AARARARELLARLNIPERLW 143 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhh
Confidence 9888999999999998654322100 0 001124557888999753 3
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+. .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |....+.+++
T Consensus 144 ~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vs-H~~~~~~~~~ 216 (224)
T TIGR02324 144 HL-----PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIF-HDEEVRELVA 216 (224)
T ss_pred hC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhc
Confidence 43 4568999999999999999999999999999999999999999999999854 456666554 5566777899
Q ss_pred CeEEEec
Q 001957 393 DDIILLS 399 (991)
Q Consensus 393 D~vilL~ 399 (991)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998874
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=295.72 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=152.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.|++||+++|+||||||||||+++|+|.++++ +|+|+++|.++.....++.++|++|++.+++.+||+|
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 5999999999999999999999999999999999999998 9999999988642223567899999888889999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..+..+.. ...++++++.+||.+..+.. ++.||
T Consensus 93 ~l~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS 129 (207)
T PRK13539 93 NLEFWAAFLGGE--------------------------------------ELDIAAALEAVGLAPLAHLP-----FGYLS 129 (207)
T ss_pred HHHHHHHhcCCc--------------------------------------HHHHHHHHHHcCCHHHHcCC-----hhhcC
Confidence 998764332100 01245678899997765544 45899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.| ...++.. |+++.+..
T Consensus 130 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH-~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATH-IPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-Cchhhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999999999865 4666666554 5556665 99988754
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=323.29 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+. ++.+...+.+.+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~----------~i~~~~~l~~~lTV~ 103 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA----------LIAISSGLNGQLTGI 103 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee----------eEEeccccCCCCcHH
Confidence 46999999999999999999999999999999999999998 99999999752 222334456779999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++.+.....+... . +....++.+++.++|.+..+.. ++.|
T Consensus 104 EnL~l~~~~~~~~~----------~------------------------e~~e~i~elLe~lgL~~~ld~~-----~~~L 144 (549)
T PRK13545 104 ENIELKGLMMGLTK----------E------------------------KIKEIIPEIIEFADIGKFIYQP-----VKTY 144 (549)
T ss_pred HHHHhhhhhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhhCC-----cccC
Confidence 99988654322100 0 0011245678889998776654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++ +|...++.++||++++|++|+++
T Consensus 145 SGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIV-SHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFI-SHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999754 45565555 55667889999999999999999
Q ss_pred EecCHHHHHHHH
Q 001957 405 YQGPRELVLEFF 416 (991)
Q Consensus 405 ~~G~~~~~~~~f 416 (991)
+.|+++++..-|
T Consensus 223 ~~G~~~el~~~~ 234 (549)
T PRK13545 223 EYGDIKEVVDHY 234 (549)
T ss_pred EECCHHHHHhhH
Confidence 999999886543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=290.07 Aligned_cols=161 Identities=32% Similarity=0.467 Sum_probs=140.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 35999999999999999999999999999999999999998 999999999876432 2467999999988888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|++||+.+
T Consensus 90 ~~t~~~~l~~---------------------------------------------------------------------- 99 (178)
T cd03229 90 HLTVLENIAL---------------------------------------------------------------------- 99 (178)
T ss_pred CCCHHHheee----------------------------------------------------------------------
Confidence 8999887632
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.+++|++++|+
T Consensus 100 ---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~ 175 (178)
T cd03229 100 ---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV-THDLDEAARLADRVVVLR 175 (178)
T ss_pred ---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEe
Confidence 0999999999999999999999999999999999999999999999876324555554 566778888999999999
Q ss_pred CCe
Q 001957 400 DGQ 402 (991)
Q Consensus 400 ~G~ 402 (991)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.14 Aligned_cols=188 Identities=30% Similarity=0.360 Sum_probs=158.1
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhh
Q 001957 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE 261 (991)
Q Consensus 183 llGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 261 (991)
|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++.+||+||+.|+.+..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~--- 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR--- 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH---
Confidence 68999999999999999999998 9999999998865432 4679999999999999999999999865432110
Q ss_pred hhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC
Q 001957 262 MLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341 (991)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~ 341 (991)
. +....++++++.+||.+..|. .+..|||||||||+||++|+.+
T Consensus 75 -------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 75 -------A------------------------EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred -------H------------------------HHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhC
Confidence 0 011235668899999876664 4568999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 342 p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv-THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV-THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999876445566555 56677899999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=337.89 Aligned_cols=191 Identities=29% Similarity=0.418 Sum_probs=151.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~t 411 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGT 411 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcC
Confidence 4899999999999999999999999999999999999998 9999999999877643 46899999987655 579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++... ...+ ++.+..+..+ .++. .-.|++..||.+|+ ...
T Consensus 412 i~~Ni~~~~~~----~~~~---~i~~a~~~~~------------------------l~~~--i~~lp~Gldt~v~e-~g~ 457 (529)
T TIGR02857 412 IAENIRLARPD----ASDA---EIRRALERAG------------------------LDEF--VAALPQGLDTLIGE-GGA 457 (529)
T ss_pred HHHHHhccCCC----CCHH---HHHHHHHHcC------------------------cHHH--HHhCcccccchhcc-ccc
Confidence 99999986321 0111 1111111110 0111 22456778999986 455
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 799999999999999999999999999999999999999999999864 466777766654 556789999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=290.60 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=142.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 239 (991)
+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+. .+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 899999999999999999999999999999999999998 9999999998865432 35799999984 5788
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+..
T Consensus 92 ~~t~~e~l~~~~-------------------------------------------------------------------- 103 (182)
T cd03215 92 DLSVAENIALSS-------------------------------------------------------------------- 103 (182)
T ss_pred CCcHHHHHHHHh--------------------------------------------------------------------
Confidence 899999987631
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|+
T Consensus 104 ---~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~~d~v~~l~ 178 (182)
T cd03215 104 ---LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLI-SSELDELLGLCDRILVMY 178 (182)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEec
Confidence 0999999999999999999999999999999999999999999999865 45666665 556678999999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=367.21 Aligned_cols=224 Identities=20% Similarity=0.233 Sum_probs=177.4
Q ss_pred ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 001957 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (991)
Q Consensus 116 ~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL 195 (991)
...|+|+||++.+.. ....||+|||++|+|||.++|+|++|||||||+
T Consensus 1306 ~G~I~f~nVsf~Y~~--------------------------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl 1353 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYRE--------------------------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353 (1560)
T ss_pred CCeEEEEEEEEEeCC--------------------------------CCCceeecceEEECCCCEEEEECCCCCCHHHHH
Confidence 357999999998742 112499999999999999999999999999999
Q ss_pred HHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 196 ~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
++|.|+++|+ +|+|++||.++.+... ++.++||||++.+| ..||||||+.... ...+ ++.+..+.
T Consensus 1354 ~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~~-----~sde---eI~~Al~~ 1421 (1560)
T PTZ00243 1354 LTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFLE-----ASSA---EVWAALEL 1421 (1560)
T ss_pred HHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccc-cccHHHHhCcccC-----CCHH---HHHHHHHH
Confidence 9999999998 9999999999987653 57899999987655 5799999965311 1111 11111111
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC-CcEeEEeCCC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP-ALALFMDEIS 351 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~-p~vLllDEPT 351 (991)
.++ ++. +-.|++..||.||+ ....||||||||++|||||+++ |+||+|||||
T Consensus 1422 a~l------------------------~~~--I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT 1474 (1560)
T PTZ00243 1422 VGL------------------------RER--VASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEAT 1474 (1560)
T ss_pred CCC------------------------hHH--HhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 111 111 23467789999996 4456999999999999999995 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||+.+...|.+.|++.. .++|+|+..|. .++...||+|++|++|+|+++|+++++++
T Consensus 1475 SaLD~~te~~Iq~~L~~~~--~~~TvI~IAHR--l~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1475 ANIDPALDRQIQATVMSAF--SAYTVITIAHR--LHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHC--CCCEEEEEecc--HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999853 35666665443 36778899999999999999999999863
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=293.07 Aligned_cols=183 Identities=22% Similarity=0.302 Sum_probs=147.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~t 97 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GT 97 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-cc
Confidence 4899999999999999999999999999999999999998 999999999875432 2357999999886665 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+... . .. + .+.+.++ + +..+.
T Consensus 98 v~~~l~~~~~---~--~~---------~---------------------------~~~~~l~---~---------~~~~~ 124 (207)
T cd03369 98 IRSNLDPFDE---Y--SD---------E---------------------------EIYGALR---V---------SEGGL 124 (207)
T ss_pred HHHHhcccCC---C--CH---------H---------------------------HHHHHhh---c---------cCCCC
Confidence 9999975310 0 00 0 0111222 1 23457
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++++|||||+|||+.+...+++.|+++. .+.|+|++. |...++.. +|++++|++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~t-h~~~~~~~-~d~v~~l~~g~ 200 (207)
T cd03369 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIA-HRLRTIID-YDKILVMDAGE 200 (207)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEe-CCHHHHhh-CCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999873 356666655 45556655 99999999999
Q ss_pred EEEecCH
Q 001957 403 IVYQGPR 409 (991)
Q Consensus 403 iv~~G~~ 409 (991)
++.+|++
T Consensus 201 i~~~g~~ 207 (207)
T cd03369 201 VKEYDHP 207 (207)
T ss_pred EEecCCC
Confidence 9988863
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=294.67 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=157.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-YNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
++|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|. ++|..+ .+.|+..+++.+||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL----------PLGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee----------ccccccccCCcCcHH
Confidence 3799999999999999999999999999999999999998 99997 777532 123455678899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.... ...+.+++.++|+...|+.+ +.|
T Consensus 68 enl~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~-----~~l 105 (213)
T PRK15177 68 ENARMMASLYGLDGD-------------------------------------EFSHFCYQLTQLEQCYTDRV-----SEY 105 (213)
T ss_pred HHHHHHHHHcCCCHH-------------------------------------HHHHHHHHHhChhHHhhchH-----hhc
Confidence 999987654322100 00112344567777766555 579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+++|++|+.+|++++|||||++||+.++..+.+.|.+..+ +.++| .++|...++..+||++++|++|+++
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii-~vsH~~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLI-VLTHNPRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEE-EEECCHHHHHHhcCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999998865443 34544 4567777888999999999999999
Q ss_pred EecCHHHHHHHHHh
Q 001957 405 YQGPRELVLEFFAS 418 (991)
Q Consensus 405 ~~G~~~~~~~~f~~ 418 (991)
+.|+.+++..+++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (213)
T PRK15177 183 MCEDLAQATALFEQ 196 (213)
T ss_pred EeCCHHHHHHHHHH
Confidence 99999999877653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=297.70 Aligned_cols=194 Identities=23% Similarity=0.402 Sum_probs=151.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 103 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RS 103 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hh
Confidence 5999999999999999999999999999999999999998 999999998875432 2357899999876654 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.++..... . .++.+... ...++.+++.+ |+.+..+ ..
T Consensus 104 v~~nl~~~~~~~~----~---~~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~-----~~ 147 (226)
T cd03248 104 LQDNIAYGLQSCS----F---ECVKEAAQ------------------------KAHAHSFISELASGYDTEVG-----EK 147 (226)
T ss_pred HHHHhccccCCCC----H---HHHHHHHH------------------------HcCcHHHHHhccccccchhh-----cC
Confidence 9999987643110 0 01110000 01134566777 6665444 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++| ...++. .+|+|++|++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh-~~~~~~-~~d~i~~l~~ 223 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAH-RLSTVE-RADQILVLDG 223 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEC-CHHHHH-hCCEEEEecC
Confidence 578999999999999999999999999999999999999999999999753 456666554 555665 5999999999
Q ss_pred CeE
Q 001957 401 GQI 403 (991)
Q Consensus 401 G~i 403 (991)
|++
T Consensus 224 g~i 226 (226)
T cd03248 224 GRI 226 (226)
T ss_pred CcC
Confidence 974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=333.44 Aligned_cols=209 Identities=19% Similarity=0.325 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecC---CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQH---DNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~---d~~~ 238 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+ ..++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF 353 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence 4899999999999999999999999999999999999998 9999999998754321 3568999997 4578
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+||+.+.......+... ......+. .....++++++.+||. +..++.+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 407 (510)
T PRK09700 354 PNFSIAQNMAISRSLKDGGYKG-AMGLFHEV------------------------DEQRTAENQRELLALKCHSVNQNI- 407 (510)
T ss_pred CCCcHHHHhccccccccccccc-cccccChH------------------------HHHHHHHHHHHhcCCCCCCccCcc-
Confidence 8999999998764321000000 00000000 0012346688999996 6666554
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+.+++.++||++++
T Consensus 408 ----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~-vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 408 ----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILM-VSSELPEIITVCDRIAV 481 (510)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHhhCCEEEE
Confidence 57999999999999999999999999999999999999999999999875 4556555 56677899999999999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|++++.++.
T Consensus 482 l~~G~i~~~~~~ 493 (510)
T PRK09700 482 FCEGRLTQILTN 493 (510)
T ss_pred EECCEEEEEecC
Confidence 999999998865
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=298.09 Aligned_cols=198 Identities=25% Similarity=0.356 Sum_probs=157.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCHHHHHHHH
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFS 250 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~ 250 (991)
++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.. .++.++|++|++.++ +.+||.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhc
Confidence 468899999999999999999999999999998 9999999987643 246799999987653 358999999886
Q ss_pred HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhH
Q 001957 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (991)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (991)
.... .+. .. .+. ......++++++.+||.+..++. +..|||||||
T Consensus 76 ~~~~-~~~-~~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 120 (223)
T TIGR03771 76 RTGH-IGW-LR----------------RPC------------VADFAAVRDALRRVGLTELADRP-----VGELSGGQRQ 120 (223)
T ss_pred cccc-ccc-cc----------------CCc------------HHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHH
Confidence 3211 000 00 000 00012345678899998766654 4579999999
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHH
Q 001957 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE 410 (991)
Q Consensus 331 Rvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~ 410 (991)
||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++| +|++++.|+.+
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~-sH~~~~~~~~~d~i~~l-~G~i~~~~~~~ 197 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMT-THDLAQAMATCDRVVLL-NGRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHH
Confidence 99999999999999999999999999999999999999864 45566665 45666899999999999 89999999988
Q ss_pred HHH
Q 001957 411 LVL 413 (991)
Q Consensus 411 ~~~ 413 (991)
++.
T Consensus 198 ~~~ 200 (223)
T TIGR03771 198 QLQ 200 (223)
T ss_pred Hhc
Confidence 764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=285.23 Aligned_cols=155 Identities=28% Similarity=0.488 Sum_probs=134.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+++|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GS 91 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCcccc-Cc
Confidence 4999999999999999999999999999999999999998 9999999998765432 467899999876555 47
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+
T Consensus 92 v~~~l--------------------------------------------------------------------------- 96 (173)
T cd03246 92 IAENI--------------------------------------------------------------------------- 96 (173)
T ss_pred HHHHC---------------------------------------------------------------------------
Confidence 65431
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ .+.+ +.+|++++|++|+
T Consensus 97 -LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~-~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 97 -LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHR-PETL-ASADRILVLEDGR 172 (173)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHH-HhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999865 46676666554 4555 6899999999997
Q ss_pred E
Q 001957 403 I 403 (991)
Q Consensus 403 i 403 (991)
+
T Consensus 173 i 173 (173)
T cd03246 173 V 173 (173)
T ss_pred C
Confidence 4
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=332.16 Aligned_cols=207 Identities=17% Similarity=0.277 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCeeCCCccc----cceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~ 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|+++..... ++.++|++|+. .
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDG 351 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCC
Confidence 469999999999999999999999999999999999998 47 9999999998753321 34689999984 4
Q ss_pred CCCCCCHHHHHHHHHH--hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccc
Q 001957 237 HIGEMTVRETLAFSAR--CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCAD 313 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (991)
+++.+||.||+.+... ..+.+. ..+ .+....++.+++.++|. +..|
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~ 400 (506)
T PRK13549 352 IVPVMGVGKNITLAALDRFTGGSR-------IDD------------------------AAELKTILESIQRLKVKTASPE 400 (506)
T ss_pred CcCCCCHHHHhhhhhhhhhccCcc-------cCh------------------------HHHHHHHHHHHHhcCccCCCcc
Confidence 7788999999987632 100000 000 00112356789999996 4566
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|+| .++|+..++.++||
T Consensus 401 ~~-----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi-~~sHd~~~~~~~~d 473 (506)
T PRK13549 401 LA-----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAII-VISSELPEVLGLSD 473 (506)
T ss_pred cc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHhCC
Confidence 54 458999999999999999999999999999999999999999999999875 455544 55677889999999
Q ss_pred eEEEecCCeEEEecCHHHH
Q 001957 394 DIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~ 412 (991)
++++|++|+++..|+.+++
T Consensus 474 ~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 474 RVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEEEECCEEEEEeccccC
Confidence 9999999999999987654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=286.44 Aligned_cols=161 Identities=29% Similarity=0.471 Sum_probs=138.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.+||.++... ..++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 4899999999999999999999999999999999999998 99999999976532 12467899999876654 688
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+ +..
T Consensus 92 ~~~i-------------------------------------------------------------------------~~~ 98 (178)
T cd03247 92 RNNL-------------------------------------------------------------------------GRR 98 (178)
T ss_pred HHhh-------------------------------------------------------------------------ccc
Confidence 7765 125
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||++||++++.+|++|+|||||+|||..++..+++.|+++. .+.|+|++.| ..+++ ..+|++++|++|++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh-~~~~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITH-HLTGI-EHMDKILFLENGKI 174 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEec-CHHHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999874 3566666655 45566 46999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=289.32 Aligned_cols=182 Identities=21% Similarity=0.281 Sum_probs=147.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 35999999999999999999999999999999999999998 99999999987532 12467999999888888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+...... . ...++++++.+++.+..|..+ .
T Consensus 91 v~~~~~~~~~~~~---~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 126 (200)
T PRK13540 91 LRENCLYDIHFSP---G------------------------------------AVGITELCRLFSLEHLIDYPC-----G 126 (200)
T ss_pred HHHHHHHHHhcCc---c------------------------------------hHHHHHHHHHcCCchhhhCCh-----h
Confidence 9999998642100 0 012356788889876665444 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.||||||||++||++++.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++ +..+.+|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~~ 197 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYEE 197 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchhh
Confidence 7999999999999999999999999999999999999999999999754 466777765543 3335566543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=299.84 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=148.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|. +|+|.++| .++|++|+..+++ .||+|
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----------~i~yv~q~~~l~~-~tv~e 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----------RISFSSQFSWIMP-GTIKE 116 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC----------EEEEEeCcccccc-cCHHH
Confidence 3899999999999999999999999999999999999998 99999998 3899999877666 59999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..... .. ......+.. ..+..++. +....++.++ ..+..||
T Consensus 117 nl~~~~~~~----~~----~~~~~l~~~------------------------~l~~~l~~--~~~~~~~~~~-~~~~~LS 161 (282)
T cd03291 117 NIIFGVSYD----EY----RYKSVVKAC------------------------QLEEDITK--FPEKDNTVLG-EGGITLS 161 (282)
T ss_pred HhhcccccC----HH----HHHHHHHHh------------------------CCHHHHHh--ccccccceec-CCCCcCC
Confidence 998753210 00 000000000 00112222 2223344443 3457899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.+ +++. .+.|+|++.| +..++ ..+|++++|++|+++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH-~~~~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTS-KMEHL-KKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeC-ChHHH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999998865 4543 3566666554 55555 579999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 238 ~~g~~~~~~ 246 (282)
T cd03291 238 FYGTFSELQ 246 (282)
T ss_pred EECCHHHHH
Confidence 999998775
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=331.42 Aligned_cols=209 Identities=20% Similarity=0.343 Sum_probs=167.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|+. .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 4899999999999999999999999999999999999998 9999999998753211 35689999985 488
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||.||+.++.......... . .... .....++++++.+||. +..|+.+
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~--~--~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 394 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGC--L--INNR------------------------WEAENADRFIRSLNIKTPSREQLI- 394 (501)
T ss_pred CCCCHHHHhccccchhhccccc--c--cChH------------------------HHHHHHHHHHHhcCcccCCccCcc-
Confidence 8999999998754211000000 0 0000 0012346689999994 5666655
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++++ .+.|+|+ ++|+..++.++||++++
T Consensus 395 ----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-vsHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 395 ----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLF-VSSDLPEVLGVADRIVV 468 (501)
T ss_pred ----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHhhCCEEEE
Confidence 57999999999999999999999999999999999999999999999875 4566555 56778899999999999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|++++.
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=330.08 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=167.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+. .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 3699999999999999999999999999999999999998 9999999998764322 34699999985 578
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+||+.+..... ....... ... .+....++++++.+||. +..|+.
T Consensus 343 ~~~tv~e~l~~~~~~~-~~~~~~~---~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 392 (501)
T PRK10762 343 LGMSVKENMSLTALRY-FSRAGGS---LKH------------------------ADEQQAVSDFIRLFNIKTPSMEQA-- 392 (501)
T ss_pred CCCcHHHHhhhhhhhh-hcccccc---cCH------------------------HHHHHHHHHHHHhcCCCCCCccCc--
Confidence 8999999998753210 0000000 000 00112356789999995 556654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++
T Consensus 393 ---~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii-vtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 393 ---IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIIL-VSSEMPEVLGMSDRILV 467 (501)
T ss_pred ---hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHhhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 4555555 55677899999999999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|+++++
T Consensus 468 l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 468 MHEGRISGEFTREQA 482 (501)
T ss_pred EECCEEEEEeccccC
Confidence 999999999987765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=297.10 Aligned_cols=210 Identities=26% Similarity=0.378 Sum_probs=180.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC-
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD- 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d- 235 (991)
....++++||+++++||.++|+|.||||||||-.+|.+++++ +|+|.++|++++.+.. ++.+-.|+|++
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCC
Confidence 456799999999999999999999999999999999999987 7999999999975432 46788999986
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+-|.|||.+-+.-+.+.+.+... +. +....+.+.|+..||+...
T Consensus 374 gSLsPRmtV~qII~EGL~vh~~~ls--------~~------------------------eR~~rv~~aL~EVGLDp~~-- 419 (534)
T COG4172 374 GSLSPRMTVGQIIEEGLRVHEPKLS--------AA------------------------ERDQRVIEALEEVGLDPAT-- 419 (534)
T ss_pred CCCCcccCHHHHhhhhhhhcCCCCC--------HH------------------------HHHHHHHHHHHHcCCChhH--
Confidence 578999999999999887754321 11 1223456689999997532
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
-++++++.|||||||++||||++.+|++++||||||+||-+-..+|++.|+++-++. +-.-+.|+|+..-+-.+||+
T Consensus 420 --r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~ 496 (534)
T COG4172 420 --RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHR 496 (534)
T ss_pred --hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhce
Confidence 257899999999999999999999999999999999999999999999999997654 45555678899999999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|+||.+|+||++|+.+++.
T Consensus 497 viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 497 VIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999884
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=315.59 Aligned_cols=207 Identities=26% Similarity=0.380 Sum_probs=174.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+..++|+||||.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..++ .-++.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4467999999999999999999999999999999999999999 99999999998755543 5689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
|+|||.|||.++........ .+ | ..+.......+|+.+|+....|+.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g---~i----------------d-----------~~~m~~~A~~~l~~lg~~~~~~~~v~- 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFG---LI----------------D-----------RKAMRRRARELLARLGLDIDPDTLVG- 144 (500)
T ss_pred CCccHHHHhhcccccccCCC---cc----------------C-----------HHHHHHHHHHHHHHcCCCCChhhhhh-
Confidence 99999999998765332100 00 0 00112235668999999655777776
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||+||||-|.||+||..++++|+|||||+.|+...+..+.+.++++.. .+..|+.|+|..+|++++||+|.||
T Consensus 145 ----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 145 ----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 6999999999999999999999999999999999999999999999864 4566666788999999999999999
Q ss_pred cCCeEEEecCH
Q 001957 399 SDGQIVYQGPR 409 (991)
Q Consensus 399 ~~G~iv~~G~~ 409 (991)
.+|++|..++.
T Consensus 219 RDG~~v~~~~~ 229 (500)
T COG1129 219 RDGRVVGTRPT 229 (500)
T ss_pred eCCEEeeeccc
Confidence 99999998873
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=329.59 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=151.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++.+... ++.++||+|+.. +++.|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-lf~~t 412 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFH-LFDQL 412 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChh-HHHHh
Confidence 4899999999999999999999999999999999999998 9999999999876543 468999999654 55568
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc--c
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE--M 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~--~ 320 (991)
++|| + .... +..+++.++.+++....+ .++. .
T Consensus 413 i~~n---~-----~~~~------------------------------------~~~~~~~~~~~~l~~~~~--~~~~~~~ 446 (547)
T PRK10522 413 LGPE---G-----KPAN------------------------------------PALVEKWLERLKMAHKLE--LEDGRIS 446 (547)
T ss_pred hccc---c-----CchH------------------------------------HHHHHHHHHHcCCchhhh--ccccCCC
Confidence 8776 1 0000 001234566677764332 2221 1
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
...||||||||++|||+++++|++|+|||||++||+.++..+.+.|.+..+..++|+|+..|++ +....+|+|++|++
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~ 524 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999875443467877777664 66789999999999
Q ss_pred CeEEEe
Q 001957 401 GQIVYQ 406 (991)
Q Consensus 401 G~iv~~ 406 (991)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999876
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=290.00 Aligned_cols=215 Identities=26% Similarity=0.344 Sum_probs=175.3
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEe-cCCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYIS-QHDN 236 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~-Q~d~ 236 (991)
.+++...+.+||||.|++|++++++|||||||||+||+|+|++.|+ +|.|.+||++.-... .-+.+++|+ |.-.
T Consensus 32 ~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred chhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 3444567999999999999999999999999999999999999998 999999998653211 125677775 5555
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.-.+.+.|++........++. .+-....+.+.++|+|+...+..
T Consensus 109 l~Wdlp~~ds~~v~~~Iy~Ipd----------------------------------~~F~~r~~~l~eiLdl~~~lk~~- 153 (325)
T COG4586 109 LWWDLPALDSLEVLKLIYEIPD----------------------------------DEFAERLDFLTEILDLEGFLKWP- 153 (325)
T ss_pred eeeechhhhhHHHHHHHHhCCH----------------------------------HHHHHHHHHHHHHhcchhhhhhh-
Confidence 6666778888776544332211 11223456778899998776654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+|.||-|||.|+.+|.+|+++|+||||||||-|||..++..|.+.|++.....+.|++. .+|....+..+||+|+
T Consensus 154 ----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll-TTH~~~di~~lc~rv~ 228 (325)
T COG4586 154 ----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL-TTHIFDDIATLCDRVL 228 (325)
T ss_pred ----hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE-EecchhhHHHhhhheE
Confidence 47899999999999999999999999999999999999999999999998766655555 4678999999999999
Q ss_pred EecCCeEEEecCHHHHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLEFFA 417 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~ 417 (991)
+|+.|+++|.|+.+++.+-|.
T Consensus 229 ~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 229 LIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EeeCCcEeecccHHHHHHHhC
Confidence 999999999999999987664
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=276.76 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=177.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (991)
+.||++||++|++||+.+||||||||||||.++|+|.-.- --++|+|+++|+++.++.+. .-+..-+|.+.-+|-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 4699999999999999999999999999999999998431 12389999999999887663 345567899999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~ 319 (991)
.|+.+.|..+.+.+.... + . .. +....+++.++.++++. .++..|.
T Consensus 96 V~~~~fLr~a~n~~~~~~---------------~----~-~~-----------~~~~~~~e~~~~l~~~~~~l~R~vN-- 142 (251)
T COG0396 96 VTNSDFLRAAMNARRGAR---------------G----I-LP-----------EFIKELKEKAELLGLDEEFLERYVN-- 142 (251)
T ss_pred eeHHHHHHHHHHhhhccc---------------c----c-cH-----------HHHHHHHHHHHHcCCCHHHhhcccC--
Confidence 999999998765421100 0 0 00 11223566788999987 5565554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc--CeEEE
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF--DDIIL 397 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf--D~vil 397 (991)
-|+|||||||.-|+.+++.+|++.+||||-||||..+-..|-+.++.+.. .+..+++.+|+ ..+.++. |+|.+
T Consensus 143 --~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy--~rll~~i~pD~vhv 217 (251)
T COG0396 143 --EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHY--QRLLDYIKPDKVHV 217 (251)
T ss_pred --CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecH--HHHHhhcCCCEEEE
Confidence 48999999999999999999999999999999999999999999999865 45566555544 4667766 99999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCCCC
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGFRC 423 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~ 423 (991)
|.+|+||..|.+ ++..+++..||.|
T Consensus 218 l~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 218 LYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999 8889999989865
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=357.43 Aligned_cols=222 Identities=21% Similarity=0.208 Sum_probs=174.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
.+|+|+||++.+.. ....+|+|||++|+|||.++|+|+||||||||++
T Consensus 1216 g~I~f~nVs~~Y~~--------------------------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE--------------------------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred CeEEEEEEEEEeCC--------------------------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 57999999999842 1134999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
+|.|+++ . +|+|++||.++.+... ++.++||||++.+|. .||||||+.... ...+.+.+
T Consensus 1264 lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~~-----~tdeei~~-------- 1325 (1490)
T TIGR01271 1264 ALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYEQ-----WSDEEIWK-------- 1325 (1490)
T ss_pred HHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCc-cCHHHHhCcccC-----CCHHHHHH--------
Confidence 9999986 5 8999999999987653 478999999776665 699999965321 01111111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+....+. +.. +..++...||.||+ ....||||||||++|||||+++|+||+|||||++
T Consensus 1326 -------------aL~~~~L------~~~--i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~ 1383 (1490)
T TIGR01271 1326 -------------VAEEVGL------KSV--IEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAH 1383 (1490)
T ss_pred -------------HHHHCCC------HHH--HHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 1110000 011 12356678999986 4557999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||..+...|.+.|++.. .++|+|+.. |.. ++...||+|++|++|+|++.|+++++++
T Consensus 1384 lD~~Te~~I~~~L~~~~--~~~TvI~Ia-HRl-~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1384 LDPVTLQIIRKTLKQSF--SNCTVILSE-HRV-EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCHHHHHHHHHHHHHHc--CCCEEEEEe-cCH-HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999863 355666554 433 6677799999999999999999999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=292.75 Aligned_cols=190 Identities=24% Similarity=0.253 Sum_probs=151.8
Q ss_pred eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 167 ILKDVSGVIK-----PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 167 iL~~vs~~i~-----~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.|+|+++.++ +|++++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc---------eEEEecccccCCCCC
Confidence 5667777665 79999999999999999999999999998 999999984 589999987777889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|++.+.....+. .....+++++.+||++..|+.+
T Consensus 77 tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~l~l~~~~~~~~----- 113 (246)
T cd03237 77 TVRDLLSSITKDFYT--------------------------------------HPYFKTEIAKPLQIEQILDREV----- 113 (246)
T ss_pred CHHHHHHHHhhhccc--------------------------------------cHHHHHHHHHHcCCHHHhhCCh-----
Confidence 999999764321100 0001245678899987666544
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++++..+.|+|+ ++|+..++..+||+|++|+++
T Consensus 114 ~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-vsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV-VEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999987644555555 566777888999999999765
Q ss_pred eEE--EecCHHHH
Q 001957 402 QIV--YQGPRELV 412 (991)
Q Consensus 402 ~iv--~~G~~~~~ 412 (991)
..+ ..+++..+
T Consensus 193 ~~~~~~~~~~~~~ 205 (246)
T cd03237 193 PSVNGVANPPQSL 205 (246)
T ss_pred CeeEEEeCCchHH
Confidence 443 33444443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=268.76 Aligned_cols=196 Identities=26% Similarity=0.414 Sum_probs=166.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIG 239 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (991)
....||+++|+.+.+||..+|.||||||||||||+++.+.+|+ +|++++.|++++...+ +..++||.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3456999999999999999999999999999999999999999 9999999999987765 468999999998887
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
. ||++||.|.-+.+.. +| |.++ .-..|+.++|++..= +.
T Consensus 91 ~-tVeDNlifP~~~r~r-------------------r~--dr~a---------------a~~llar~~l~~~~L----~k 129 (223)
T COG4619 91 D-TVEDNLIFPWQIRNR-------------------RP--DRAA---------------ALDLLARFALPDSIL----TK 129 (223)
T ss_pred c-chhhccccchHHhcc-------------------CC--ChHH---------------HHHHHHHcCCchhhh----cc
Confidence 5 999999998765421 11 2221 223678888876432 24
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..||||||||++++|-|.--|+||+||||||+||..++..|-+.|.++.+.+ ...++-++|+..+..+.||+++-+.
T Consensus 130 ~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q-~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ-NVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhh-ceEEEEEecChHHHhhhhheEEEec
Confidence 456899999999999999999999999999999999999999999999998744 4566667788889999999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
.|++
T Consensus 209 ~G~~ 212 (223)
T COG4619 209 PGHA 212 (223)
T ss_pred cCcc
Confidence 9876
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=282.71 Aligned_cols=166 Identities=36% Similarity=0.558 Sum_probs=137.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 35999999999999999999999999999999999999998 9999999998754322 234566666
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
+++.+||.+..++ .+
T Consensus 81 ------------------------------------------------------------~l~~~gl~~~~~~-----~~ 95 (180)
T cd03214 81 ------------------------------------------------------------ALELLGLAHLADR-----PF 95 (180)
T ss_pred ------------------------------------------------------------HHHHcCCHhHhcC-----Cc
Confidence 1234455433333 34
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|+|++ +|...++.+++|++++|++|
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~~~~l~~g 174 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV-LHDLNLAARYADRVILLKDG 174 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999865325566655 55666888999999999999
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 175 ~i~~~~ 180 (180)
T cd03214 175 RIVAQG 180 (180)
T ss_pred EEEecC
Confidence 998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=326.05 Aligned_cols=207 Identities=18% Similarity=0.253 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCCccc----cceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~ 236 (991)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++|++|+. .
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 4699999999999999999999999999999999999985 7 8999999998753221 35689999984 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
+++.+||+||+.++..-..... . .... ......++.+++.++|.+ ..|+.
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~-~----~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFK-M----RIDA------------------------AAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccC-C----cCCH------------------------HHHHHHHHHHHHhcCccCCCccCc
Confidence 7889999999988642000000 0 0000 001123567889999964 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|+ ++|+.+++.++||++
T Consensus 401 ~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-vsHd~~~~~~~~d~v 473 (500)
T TIGR02633 401 I-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIV-VSSELAEVLGLSDRV 473 (500)
T ss_pred c-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEE
Confidence 4 57999999999999999999999999999999999999999999999875 4556544 567788999999999
Q ss_pred EEecCCeEEEecCHH
Q 001957 396 ILLSDGQIVYQGPRE 410 (991)
Q Consensus 396 ilL~~G~iv~~G~~~ 410 (991)
++|++|+++..++.+
T Consensus 474 ~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 474 LVIGEGKLKGDFVNH 488 (500)
T ss_pred EEEECCEEEEEEccc
Confidence 999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=290.26 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=144.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 46999999999999999999999999999999999999988 999999998775421 13568999998876
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-------
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV------- 310 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~------- 310 (991)
+ ..||+||+.+..... . + + ..++++.++|.+
T Consensus 91 ~-~~t~~~nl~~~~~~~----~-~---~---------------------------------~~~~~~~~~l~~~~~~~~~ 128 (218)
T cd03290 91 L-NATVEENITFGSPFN----K-Q---R---------------------------------YKAVTDACSLQPDIDLLPF 128 (218)
T ss_pred c-cccHHHHHhhcCcCC----H-H---H---------------------------------HHHHHHHhCcHHHHHhCcC
Confidence 6 689999998753210 0 0 0 001122222221
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHhhccCceEEEEEecCCchh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN--CLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~--~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
..++..+ ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ .++.+ +..+.|+|++.|+ ...+
T Consensus 129 ~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~-~~~~ 205 (218)
T cd03290 129 GDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHK-LQYL 205 (218)
T ss_pred ccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCC-hHHH
Confidence 1223332 3467899999999999999999999999999999999999999998 55554 3346676666555 4455
Q ss_pred HhhcCeEEEecCCe
Q 001957 389 YDLFDDIILLSDGQ 402 (991)
Q Consensus 389 ~~lfD~vilL~~G~ 402 (991)
..+|++++|++|.
T Consensus 206 -~~~d~i~~l~~G~ 218 (218)
T cd03290 206 -PHADWIIAMKDGS 218 (218)
T ss_pred -hhCCEEEEecCCC
Confidence 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=325.77 Aligned_cols=205 Identities=17% Similarity=0.258 Sum_probs=165.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 239 (991)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+. .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999999998 9999999998764322 24689999973 4788
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+||.|++.+.......... . .. .....++++++.+||+ +..|+.+
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~----~--~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 401 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWI----K--PA-------------------------RENAVLERYRRALNIKFNHAEQAA-- 401 (510)
T ss_pred CCcHHHHHHhhhhhhhcccc----C--hH-------------------------HHHHHHHHHHHHcCCCCCCccCcc--
Confidence 89999999643110000000 0 00 0012356789999996 5666554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+| .++|+..++.++||++++|
T Consensus 402 ---~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiI-ivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 402 ---RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVL-FISSDLEEIEQMADRVLVM 476 (510)
T ss_pred ---ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEE-EECCCHHHHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999876 455544 4567788999999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|.++++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (510)
T PRK15439 477 HQGEISGALTGAAI 490 (510)
T ss_pred ECCEEEEEEccccC
Confidence 99999999877654
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=286.45 Aligned_cols=185 Identities=29% Similarity=0.376 Sum_probs=139.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|+..++ .+||+|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 5999999999999999999999999999999999999998 99999998 589999987765 679999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..... .+ +..+..+.. .....+..+ +...++.+. .....||
T Consensus 85 nl~~~~~~~-----~~---~~~~~~~~~------------------------~l~~~~~~~--~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 85 NILFGKPFD-----EE---RYEKVIKAC------------------------ALEPDLEIL--PDGDLTEIG-EKGINLS 129 (204)
T ss_pred HhccCCCcC-----HH---HHHHHHHHc------------------------CcHHHHHhc--cCcccceec-CCCCcCC
Confidence 998853210 00 000000000 001112221 122334433 3467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
||||||++||++|+.+|++++|||||+|||+.++..+.+. +++..+ .+.|+|++.|+ ...+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~-~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQ-LQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCC-HHHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999984 566544 35666666555 456666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=271.37 Aligned_cols=212 Identities=24% Similarity=0.378 Sum_probs=179.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-eeCCCccc----cceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG-HDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG-~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
..+|+|+||++.|||+-+|+|||||||||+|++|+|+.+|+ +|+|.++| .++..... +.-+|-=+|.+..|.
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 45899999999999999999999999999999999999998 99999999 77766543 245778899999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+|||+.+.+.... ....+..+. ..+....+|++|...||.+.+|..-+
T Consensus 95 ~ltV~eNLelA~~~~k~-----v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 95 NLTVRENLELALNRDKS-----VFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccHHHHHHHHhcCCcc-----hHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 99999999998653211 111111111 01123467899999999998886554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||.||||++.||+.++++|++|++|||++|+--..+.+.-+.|+.++. +..|+.+.|++..+.+++|+|.+|+
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~---~hsilVVEHDM~Fvr~~A~~VTVlh 220 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG---KHSILVVEHDMGFVREIADKVTVLH 220 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc---CceEEEEeccHHHHHHhhheeEEEe
Confidence 6999999999999999999999999999999999999999999999863 5667778999999999999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|.+...|+.+++.
T Consensus 221 ~G~VL~EGsld~v~ 234 (249)
T COG4674 221 EGSVLAEGSLDEVQ 234 (249)
T ss_pred ccceeecccHHHhh
Confidence 99999999998874
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=280.42 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=143.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+++ +|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ++.++|++|+...++.+||+||
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHH
Confidence 555 99999999999999999999999999999999998 999999999876532 3568999998888889999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+.....+. ...++.+++.++|++..+.. ++.|||
T Consensus 91 l~~~~~~~~~---------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 126 (195)
T PRK13541 91 LKFWSEIYNS---------------------------------------AETLYAAIHYFKLHDLLDEK-----CYSLSS 126 (195)
T ss_pred HHHHHHhccc---------------------------------------HHHHHHHHHHcCCHhhhccC-----hhhCCH
Confidence 9885432100 01234567888887666544 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|||||++||++++.+|++|+|||||+|||+.++..+.+.|++..+ .+.|+|++.|+ ..++. .+|-|
T Consensus 127 G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~-~~~i~-~~~~~ 192 (195)
T PRK13541 127 GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHL-ESSIK-SAQIL 192 (195)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-ccccc-hhhee
Confidence 999999999999999999999999999999999999999987543 56676666554 43433 36654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=326.89 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++|++|+..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 45999999999999999999999999999999999999998 9999999999875432 3578999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+|+.||+.+.....+... . +....+.++++.+||.+..|+..
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~lgl~~~~~~~~- 142 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYAGLER----------K------------------------QRLLRAQELLQRLGLEDRVEYQP- 142 (648)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhcCCc-
Confidence 899999999998654322100 0 01123456788999987766554
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..||||||||+.||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++.|++ +.+ +.||++++
T Consensus 143 ----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~ 215 (648)
T PRK10535 143 ----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIE 215 (648)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEE
Confidence 58999999999999999999999999999999999999999999999764 467777766554 444 57999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|+++++|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999988764
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=271.70 Aligned_cols=145 Identities=23% Similarity=0.391 Sum_probs=123.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~---------- 80 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMV---------- 80 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEE----------
Confidence 5999999999999999999999999999999999999998 9999999987653210 0011111
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
T Consensus 81 -------------------------------------------------------------------------------- 80 (163)
T cd03216 81 -------------------------------------------------------------------------------- 80 (163)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+||||||||+++|++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|..+++.+.+|++++|++|
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFI-SHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 12999999999999999999999999999999999999999999999864 45566655 56667888999999999999
Q ss_pred eEEE
Q 001957 402 QIVY 405 (991)
Q Consensus 402 ~iv~ 405 (991)
++++
T Consensus 159 ~i~~ 162 (163)
T cd03216 159 RVVG 162 (163)
T ss_pred EEEe
Confidence 9975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=272.86 Aligned_cols=150 Identities=26% Similarity=0.386 Sum_probs=131.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.++|++|+..+ +.+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~q~~~~-~~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG--------EDLLFLPQRPYL-PLGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC--------ceEEEECCCCcc-ccccHH
Confidence 35999999999999999999999999999999999999998 999999873 578999998654 578999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+. ....|
T Consensus 82 ~nl~~~---------------------------------------------------------------------~~~~L 92 (166)
T cd03223 82 EQLIYP---------------------------------------------------------------------WDDVL 92 (166)
T ss_pred HHhhcc---------------------------------------------------------------------CCCCC
Confidence 998642 02479
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
|||||||++||++|+.+|++++|||||+|||..++..+.+.|+++ +.|+|++.|++ . ....+|++++|++|
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-S-LWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999874 46777776664 3 45799999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=274.26 Aligned_cols=153 Identities=35% Similarity=0.549 Sum_probs=130.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 5999999999999999999999999999999999999998 9999999998754322 356899999865443 45
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+
T Consensus 92 ~~e~l--------------------------------------------------------------------------- 96 (171)
T cd03228 92 IRENI--------------------------------------------------------------------------- 96 (171)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 54321
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|..+++.. ||++++|++|+
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tii~~-sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVI-AHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc--CCCEEEEE-ecCHHHHHh-CCEEEEEcCCC
Confidence 89999999999999999999999999999999999999999999974 35565655 555667766 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=278.75 Aligned_cols=208 Identities=29% Similarity=0.417 Sum_probs=169.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----ccccceEEEEe--cCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYIS--QHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~~~~~~~~yv~--Q~d~~ 237 (991)
.+.||+|+|.+|+|||-.+|+|||||||||||++|+|..+|+ +|.+.+.|+.... +..++.+|||+ .+..+
T Consensus 43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 356999999999999999999999999999999999999998 9999999998643 33468899997 23445
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
.+..+|+|-+.-+.- ...+ +... +.+. .....+..+++.+|+.+.+|...
T Consensus 120 ~~~~~v~dvVlSg~~-~siG-----------------~y~~-~~~~----------~~~~~a~~lle~~g~~~la~r~~- 169 (257)
T COG1119 120 RVRETVRDVVLSGFF-ASIG-----------------IYQE-DLTA----------EDLAAAQWLLELLGAKHLADRPF- 169 (257)
T ss_pred ccccccceeeeeccc-cccc-----------------cccc-CCCH----------HHHHHHHHHHHHcchhhhccCch-
Confidence 567788887654321 1111 1110 0110 01123466899999999887555
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++...+.+.++.++|+.+|+-..|+++++
T Consensus 170 ----~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 170 ----GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred ----hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 5799999999999999999999999999999999999999999999998776788888888899999999999999
Q ss_pred ecCCeEEEecC
Q 001957 398 LSDGQIVYQGP 408 (991)
Q Consensus 398 L~~G~iv~~G~ 408 (991)
+++|+++++|.
T Consensus 246 l~~g~v~~~g~ 256 (257)
T COG1119 246 LKEGEVVAQGK 256 (257)
T ss_pred eeCCceeeccc
Confidence 99999999984
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=322.25 Aligned_cols=186 Identities=20% Similarity=0.210 Sum_probs=147.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|+.. +++.|
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-lf~~t 431 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFH-LFDDL 431 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChh-hhhhh
Confidence 5999999999999999999999999999999999999998 9999999999976543 467899999654 55668
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-------cccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-------VCADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 315 (991)
+++|+. +.... ..+++.++.+++. +..||.
T Consensus 432 i~~n~~-------~~~~~------------------------------------~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 432 IGPDEG-------EHASL------------------------------------DNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred hhcccc-------cchhH------------------------------------HHHHHHHHHcCCchhhcccccccCCc
Confidence 888741 10000 0122344455544 344442
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..||||||||++|||+++.+|++|+|||||++||+.++..+.+.+.+..+..++|+|+..|++ ++.+.+|+|
T Consensus 469 ------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~--~~~~~~d~i 540 (555)
T TIGR01194 469 ------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD--QYFELADQI 540 (555)
T ss_pred ------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH--HHHHhCCEE
Confidence 579999999999999999999999999999999999999999876432222467777776654 467899999
Q ss_pred EEecCCeEEEe
Q 001957 396 ILLSDGQIVYQ 406 (991)
Q Consensus 396 ilL~~G~iv~~ 406 (991)
++|++|++++.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=316.98 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC--CCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN--HIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~--~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|+.. +++.+|
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN--------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEEcccccccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999873 46899999853 456799
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+|++.+... ... ....++.+|+.+||. +..|.. +
T Consensus 401 ~~~~~~~~~~---~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 436 (530)
T PRK15064 401 LFDWMSQWRQ---EGD------------------------------------DEQAVRGTLGRLLFSQDDIKKS-----V 436 (530)
T ss_pred HHHHHHHhcc---CCc------------------------------------cHHHHHHHHHHcCCChhHhcCc-----c
Confidence 9999864210 000 011245678899984 455544 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ ++|+|+ ++|+.+++..+||++++|++|
T Consensus 437 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~-vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 437 KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIF-VSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999875 345555 556778999999999999999
Q ss_pred eEE-EecCHHHHH
Q 001957 402 QIV-YQGPRELVL 413 (991)
Q Consensus 402 ~iv-~~G~~~~~~ 413 (991)
+++ +.|+.++++
T Consensus 512 ~i~~~~g~~~~~~ 524 (530)
T PRK15064 512 GVVDFSGTYEEYL 524 (530)
T ss_pred eEEEcCCCHHHHH
Confidence 998 889887664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=315.76 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=156.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCCc----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..++ + +|+|.++|+++... ..++.++|++|++.+++
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY---SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCccc---CCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 4699999999999999999999999999999999998764 5 89999999875321 12356899999865543
Q ss_pred --CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccc
Q 001957 240 --EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (991)
Q Consensus 240 --~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (991)
..|+++++.++.... .... . ... .+....++++++.+||.+ ..|+.
T Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~-~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~- 398 (490)
T PRK10938 350 RVSTSVRNVILSGFFDS-IGIY-Q----------------AVS------------DRQQKLAQQWLDILGIDKRTADAP- 398 (490)
T ss_pred ccCCcHHHHHHhccccc-cccc-c----------------CCC------------HHHHHHHHHHHHHcCCchhhccCc-
Confidence 357777765432100 0000 0 000 000123567899999986 66654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh-hcCeE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-LFDDI 395 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~-lfD~v 395 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|+..++.+ ++|++
T Consensus 399 ----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 399 ----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchhhhhhhhheeE
Confidence 4589999999999999999999999999999999999999999999998763 55545555677778877 59999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
++|++|++++.-
T Consensus 474 ~~l~~G~i~~~~ 485 (490)
T PRK10938 474 EFVPDGDIYRYV 485 (490)
T ss_pred EEecCCceEEee
Confidence 999999988753
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=285.61 Aligned_cols=215 Identities=23% Similarity=0.291 Sum_probs=179.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcccc-------ceEEEEec
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q 233 (991)
....++++|||.|++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-....+ ..+++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999999753 45689999999997544321 36899999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
++ .+.|-.|+...+.-..+++.... ++ .++..+-++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------~~------------------------~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------RA------------------------AARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------HH------------------------HHHHHHHHHHHHcCCCch
Confidence 96 46778899888888777652211 11 122345568899999876
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
...+ +.++++|||||||||.||+||+.+|++|+.|||||+||.....+|++.|+++-++. +..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5443 57899999999999999999999999999999999999999999999999997654 56666788999999999
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|+|+||.+|++|++|+++++.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999998873
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=314.85 Aligned_cols=202 Identities=18% Similarity=0.294 Sum_probs=160.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|+. .++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 5899999999999999999999999999999999999998 9999999998865332 34589999974 367
Q ss_pred CCCCHHHHHHHH-----HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccc
Q 001957 239 GEMTVRETLAFS-----ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCA 312 (991)
Q Consensus 239 ~~lTV~E~l~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~ 312 (991)
+.+|+.+|..+. ....+... + ......++.+++.+++. ...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~ 385 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLD---------N------------------------SRMKSDTQWVIDSMRVKTPGH 385 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccC---------c------------------------HHHHHHHHHHHHhcCccCCCc
Confidence 889988774332 10000000 0 00112345678888985 344
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
|+ .+..|||||||||+||++++.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+.+++.++|
T Consensus 386 ~~-----~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v-sHd~~~~~~~~ 458 (491)
T PRK10982 386 RT-----QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII-SSEMPELLGIT 458 (491)
T ss_pred cc-----ccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE-CCChHHHHhhC
Confidence 54 4568999999999999999999999999999999999999999999999865 46665554 56778899999
Q ss_pred CeEEEecCCeEEEecCHH
Q 001957 393 DDIILLSDGQIVYQGPRE 410 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~ 410 (991)
|++++|++|+++..++.+
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999877553
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=268.68 Aligned_cols=208 Identities=25% Similarity=0.371 Sum_probs=168.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccce---EEEEecCC--CC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT---AAYISQHD--NH 237 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~---~~yv~Q~d--~~ 237 (991)
..++||+++|++|..|+++-|+|.||||||||+|+|+|.+.++ +|+|.++|.+++.....+. ++-|+|++ -.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 4567999999999999999999999999999999999999999 9999999999988765543 45678985 45
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHH--cCCccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV--LGLDVCADTM 315 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~dt~ 315 (991)
+++|||.||+..+.. +|...... ..+..+.+ +.| .+-++. +||++..++.
T Consensus 94 ~~~lTieENl~la~~-Rg~~rgl~--~~ln~~~~----------~~f---------------~~~l~~l~lgLenrL~~~ 145 (263)
T COG1101 94 APELTIEENLALAES-RGKKRGLS--SALNERRR----------SSF---------------RERLARLGLGLENRLSDR 145 (263)
T ss_pred cccccHHHHHHHHHh-cCcccccc--hhhhHHHH----------HHH---------------HHHHhhcccchhhhhcCh
Confidence 899999999999753 33221110 00111000 011 112333 5778888888
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+| -|||||||-|+++.|.+++|+||+|||-|++|||.++..+++.-.++..+..-|+++. +|.+..+.++-+|.
T Consensus 146 ig-----lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMV-THnm~~Al~yG~Rl 219 (263)
T COG1101 146 IG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRL 219 (263)
T ss_pred hh-----hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEE-eccHHHHHhhCCeE
Confidence 77 5999999999999999999999999999999999999999999999988766666664 67899999999999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
|+|++|+||.+-
T Consensus 220 ImLh~G~IvlDv 231 (263)
T COG1101 220 IMLHSGKIVLDV 231 (263)
T ss_pred EEEeCCeEEEEc
Confidence 999999999763
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=278.75 Aligned_cols=174 Identities=26% Similarity=0.289 Sum_probs=150.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
...+++||||.|++||+++|+|.||||||||-++|.|+++|+ +|+|.++|+++..+.
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~-------------------- 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS-------------------- 81 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc--------------------
Confidence 367999999999999999999999999999999999999999 999999999876543
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
. . + ....+.++|+.+||..- ..++++++
T Consensus 82 -------~--------~----~-----------------------------~~~~v~elL~~Vgl~~~----~~~ryPhe 109 (268)
T COG4608 82 -------K--------E----E-----------------------------RRERVLELLEKVGLPEE----FLYRYPHE 109 (268)
T ss_pred -------h--------h----H-----------------------------HHHHHHHHHHHhCCCHH----HhhcCCcc
Confidence 0 0 0 01134567888897642 22478899
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
+|||||||+.|||||+.+|+++++|||+|+||.+.+.+|++.|+++.+..+ ...+.|+|+...+..++|+|.+|..|+|
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~-lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-LTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC-CeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 999999999999999999999999999999999999999999999977544 5556677899999999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
|+.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999999885
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=312.43 Aligned_cols=191 Identities=22% Similarity=0.317 Sum_probs=155.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|++|+. .+++.+||
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET--------VKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEEeCchhhcCCCCCH
Confidence 45999999999999999999999999999999999999998 999999542 1589999985 67889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
+|++.+.....+.... ......+++.+||.. ..|.. +.
T Consensus 406 ~e~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 444 (556)
T PRK11819 406 WEEISGGLDIIKVGNR------------------------------------EIPSRAYVGRFNFKGGDQQKK-----VG 444 (556)
T ss_pred HHHHHhhccccccccc------------------------------------HHHHHHHHHhCCCChhHhcCc-----hh
Confidence 9999986532111000 001234688899963 44544 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ .+|+| .++|+..++..+||+|++|++ |
T Consensus 445 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi-~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 445 VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAV-VISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEE-EEECCHHHHHHhCCEEEEEECCC
Confidence 89999999999999999999999999999999999999999999985 24554 567788899999999999985 7
Q ss_pred eEE-EecCHHHH
Q 001957 402 QIV-YQGPRELV 412 (991)
Q Consensus 402 ~iv-~~G~~~~~ 412 (991)
+++ +.|+.++.
T Consensus 520 ~~~~~~g~~~~~ 531 (556)
T PRK11819 520 QVEWFEGNFQEY 531 (556)
T ss_pred eEEEecCCHHHH
Confidence 876 57776544
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=310.79 Aligned_cols=190 Identities=22% Similarity=0.322 Sum_probs=154.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. .+++.+||
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 46999999999999999999999999999999999999998 999999542 2589999985 47888999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
+|++.++....+.... ......+++.+||.. ..|.. +.
T Consensus 404 ~e~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 442 (552)
T TIGR03719 404 WEEISGGLDIIQLGKR------------------------------------EVPSRAYVGRFNFKGSDQQKK-----VG 442 (552)
T ss_pred HHHHHhhccccccCcc------------------------------------hHHHHHHHHhCCCChhHhcCc-----hh
Confidence 9999986432111000 001234688899963 44544 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ ++|+| .++|+...+.++||+|++|++ |
T Consensus 443 ~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~vi-ivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAV-VISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEE-EEeCCHHHHHHhCCEEEEEECCC
Confidence 89999999999999999999999999999999999999999999986 23544 566778899999999999986 6
Q ss_pred eEE-EecCHHH
Q 001957 402 QIV-YQGPREL 411 (991)
Q Consensus 402 ~iv-~~G~~~~ 411 (991)
+++ +.|+.++
T Consensus 518 ~~~~~~g~~~~ 528 (552)
T TIGR03719 518 HVEWFEGNYSE 528 (552)
T ss_pred eEEEeCCCHHH
Confidence 876 6676654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=311.69 Aligned_cols=183 Identities=24% Similarity=0.285 Sum_probs=155.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++ ..++|++|+..+.+.+||+|+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE----------LKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe----------eeEEEecccccCCCCCcHHHH
Confidence 599999999999999999999999999999999999998 9999986 148999999888899999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+...... ....++++|+.+||.+..|+. +..|||
T Consensus 421 l~~~~~~~~---------------------------------------~~~~~~~~L~~l~l~~~~~~~-----~~~LSG 456 (590)
T PRK13409 421 LRSITDDLG---------------------------------------SSYYKSEIIKPLQLERLLDKN-----VKDLSG 456 (590)
T ss_pred HHHHhhhcC---------------------------------------hHHHHHHHHHHCCCHHHHhCC-----cccCCH
Confidence 987532100 001235678999998776654 458999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+ ++|+..++..++|+|++|+ |++...
T Consensus 457 Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii-vsHD~~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV-VDHDIYMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEc-Ccceee
Confidence 99999999999999999999999999999999999999999987654556555 5667788999999999996 588777
Q ss_pred cC
Q 001957 407 GP 408 (991)
Q Consensus 407 G~ 408 (991)
|.
T Consensus 535 g~ 536 (590)
T PRK13409 535 GH 536 (590)
T ss_pred ee
Confidence 75
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=291.33 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=172.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (991)
...+++|||+.+++||+.||+|.||||||||+++|.|.+.|+ +|+|.+||+++.-..|. .-+|+|.|+..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999999 99999999998655543 46899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
++||.||+..+..-.... . +.+ ......++++.+..||+--.|..|+
T Consensus 93 ~lTV~ENiiLg~e~~~~~-~------~~~------------------------~~~~~~i~~l~~~yGl~vdp~~~V~-- 139 (501)
T COG3845 93 TLTVAENIILGLEPSKGG-L------IDR------------------------RQARARIKELSERYGLPVDPDAKVA-- 139 (501)
T ss_pred ccchhhhhhhcCcccccc-c------cCH------------------------HHHHHHHHHHHHHhCCCCCccceee--
Confidence 999999999986421000 0 000 0112345678889999988887775
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||-||||||.|-++|.++|++|+|||||+-|-+....++++.|+++++ .|+| |+.|+|-..|+.++||++.||.
T Consensus 140 ---dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~t-Ii~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 140 ---DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKT-IIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeccHHHHHHhhCeeEEEe
Confidence 6999999999999999999999999999999999999999999999876 4555 4556789999999999999999
Q ss_pred CCeEEEecC
Q 001957 400 DGQIVYQGP 408 (991)
Q Consensus 400 ~G~iv~~G~ 408 (991)
.|+++-.-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999876544
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=330.65 Aligned_cols=208 Identities=28% Similarity=0.400 Sum_probs=187.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~lT 242 (991)
+++++|+.+++||+.+++|||||||||++++|.|..+|+ +|++.++|+++.... .++.+||+||.|.+.+.+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT 656 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELT 656 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhcc
Confidence 899999999999999999999999999999999999999 999999999986422 3578999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
.||+|.+.++++|.... +.+..++..++.+||.+.+|+.++
T Consensus 657 ~rEhL~~~arlrG~~~~----------------------------------di~~~v~~ll~~~~L~~~~~~~~~----- 697 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRS----------------------------------DIGSAIEKLLRLVGLGPYANKQVR----- 697 (885)
T ss_pred HHHHHHHHHHHcCCChh----------------------------------HHHHHHHHHHHHcCChhhhccchh-----
Confidence 99999999999986321 112346788999999999998765
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.+|||+|||+++|.+|+++|++++|||||+|+|+.++..+++.++++.+ .++ .|+.++|.++|+..+|||+.+|.+|+
T Consensus 698 ~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~-aiiLTSHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 698 TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGK-AIILTSHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCC-EEEEEcCCHHHHHHHhhhhheeecCe
Confidence 7999999999999999999999999999999999999999999999865 445 56666789999999999999999999
Q ss_pred EEEecCHHHHHHHHHh
Q 001957 403 IVYQGPRELVLEFFAS 418 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~ 418 (991)
+..-|+++++...|..
T Consensus 776 l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 776 LRCIGSPQELKSRYGS 791 (885)
T ss_pred eEEecChHHHHhhcCC
Confidence 9999999999988864
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=282.73 Aligned_cols=190 Identities=24% Similarity=0.279 Sum_probs=152.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCccc-----cceEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFVP-----QRTAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~~-----~~~~~ 229 (991)
.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|. ++|+++..... ...++
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 5999999 59999999999999999999999999999998 99996 88887754211 12468
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc
Q 001957 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309 (991)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 309 (991)
|++|+...++ .++.+++.+..... + ....++++++.+||+
T Consensus 91 ~~~~~~~~~~-~~~~~~i~~~l~~~-------------~--------------------------~~~~~~~~l~~~gl~ 130 (255)
T cd03236 91 VKPQYVDLIP-KAVKGKVGELLKKK-------------D--------------------------ERGKLDELVDQLELR 130 (255)
T ss_pred eecchhccCc-hHHHHHHHHHhchh-------------H--------------------------HHHHHHHHHHHcCCc
Confidence 9999877777 48888887642100 0 011245678899998
Q ss_pred ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 310 ~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
+..+.. +..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|+ ++|+..++.
T Consensus 131 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIi-iSHd~~~~~ 203 (255)
T cd03236 131 HVLDRN-----IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLV-VEHDLAVLD 203 (255)
T ss_pred hhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHH
Confidence 766544 468999999999999999999999999999999999999999999999865 3555555 566777888
Q ss_pred hhcCeEEEecCCeEEEec
Q 001957 390 DLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G 407 (991)
++||+|++| +|+++++|
T Consensus 204 ~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 204 YLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HhCCEEEEE-CCCCCcce
Confidence 899999999 56676655
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=309.50 Aligned_cols=189 Identities=25% Similarity=0.312 Sum_probs=153.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC--CCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. .+.+..|
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG--------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC--------EEEEEecCcchhhCCccch
Confidence 46999999999999999999999999999999999999998 999999741 2589999963 3445667
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (991)
|.+++.-. . .. .....+..+|+.+++.. ..++.+
T Consensus 394 ~~~~~~~~---~-~~------------------------------------~~~~~~~~~L~~~~l~~~~~~~~~----- 428 (638)
T PRK10636 394 PLQHLARL---A-PQ------------------------------------ELEQKLRDYLGGFGFQGDKVTEET----- 428 (638)
T ss_pred HHHHHHHh---C-ch------------------------------------hhHHHHHHHHHHcCCChhHhcCch-----
Confidence 77765310 0 00 00112456788999963 455544
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+|+ ++|+...+..+||+|++|++|
T Consensus 429 ~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~-vSHd~~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 429 RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVV-VSHDRHLLRSTTDDLYLVHDG 503 (638)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999885 345554 567888999999999999999
Q ss_pred eEE-EecCHHHHHH
Q 001957 402 QIV-YQGPRELVLE 414 (991)
Q Consensus 402 ~iv-~~G~~~~~~~ 414 (991)
+++ +.|+.++..+
T Consensus 504 ~i~~~~g~~~~~~~ 517 (638)
T PRK10636 504 KVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCHHHHHH
Confidence 997 8999887643
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=248.29 Aligned_cols=209 Identities=24% Similarity=0.292 Sum_probs=174.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cc-cceEEEEecCCC--C
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VP-QRTAAYISQHDN--H 237 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~-~~~~~yv~Q~d~--~ 237 (991)
....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|.+||+++.-- .. .+.+-+|+|+++ +
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~ 100 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL 100 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhhheeeeecCCcccc
Confidence 4567999999999999999999999999999999999999999 99999999987532 22 267899999864 5
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
.|.+.|..-|++..++...- + .+..+..+-+.|+.+||- +.++
T Consensus 101 NPRl~iGqiLd~PL~l~T~~----------------------~-----------~~~R~~~i~~TL~~VGL~Pdhan--- 144 (267)
T COG4167 101 NPRLRIGQILDFPLRLNTDL----------------------E-----------PEQRRKQIFETLRMVGLLPDHAN--- 144 (267)
T ss_pred ChhhhhhhHhcchhhhcccC----------------------C-----------hHHHHHHHHHHHHHhccCccccc---
Confidence 67788888888877653211 0 111223455678899984 4444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
-++.-||-||||||++||||+-+|+|++.||.-.+||.+.+-++++.+-++-.+ .+..-|.+.|+..-+-.++|+|+
T Consensus 145 --~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek-~GiSyiYV~QhlG~iKHi~D~vi 221 (267)
T COG4167 145 --YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHIGMIKHISDQVL 221 (267)
T ss_pred --cchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH-hCceEEEEechhhHhhhhcccEE
Confidence 456789999999999999999999999999999999999999999999998764 45666667899999999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
||++|++|+.|.+.+++
T Consensus 222 VM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 222 VMHEGEVVERGSTADVL 238 (267)
T ss_pred EEecCceeecCChhhhh
Confidence 99999999999999885
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=310.15 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=142.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+++++||.++|+||||||||||+++|+|+++++ +|+|.+++ ++.++||+|++.+++. ||+|
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA--------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC--------CCcEEEECCCCCCCCc-CHHH
Confidence 5999999999999999999999999999999999999988 89998864 4579999998876665 9999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc------ccccccCc
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC------ADTMVGDE 319 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~------~dt~vg~~ 319 (991)
|+.++....... . ++. ....++++++.++|++. .||..+
T Consensus 534 ni~~~~~~~~~~----------~--------~~~---------------~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-- 578 (659)
T TIGR00954 534 QIIYPDSSEDMK----------R--------RGL---------------SDKDLEQILDNVQLTHILEREGGWSAVQD-- 578 (659)
T ss_pred HHhcCCChhhhh----------c--------cCC---------------CHHHHHHHHHHcCCHHHHhhcCCcccccc--
Confidence 998864321100 0 000 00123445666676543 344443
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.+++ .+.|+|++.|++ +..+.+|++++|+
T Consensus 579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~--~~~~~~d~il~l~ 652 (659)
T TIGR00954 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRK--SLWKYHEYLLYMD 652 (659)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCch--HHHHhCCEEEEEe
Confidence 3468999999999999999999999999999999999999999998876 356776665554 3468899999996
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=306.72 Aligned_cols=191 Identities=27% Similarity=0.357 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.++ .++|++|+. .+++.+||
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL-------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc-------EEEEEeCcccccCCCCCH
Confidence 46999999999999999999999999999999999999998 999998 4322 589999974 57889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
.|++.++....... . ....+..+|+.+++. +..++.+ .
T Consensus 401 ~e~l~~~~~~~~~~-------~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 439 (635)
T PRK11147 401 MDNLAEGKQEVMVN-------G-----------------------------RPRHVLGYLQDFLFHPKRAMTPV-----K 439 (635)
T ss_pred HHHHHhhccccccc-------c-----------------------------hHHHHHHHHHhcCCCHHHHhChh-----h
Confidence 99998753210000 0 001234578888885 4555544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-CC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-DG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~-~G 401 (991)
.|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+|+ ++|+...+..+||+|++|. +|
T Consensus 440 ~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~-vSHd~~~~~~~~d~i~~l~~~g 514 (635)
T PRK11147 440 ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLL-VSHDRQFVDNTVTECWIFEGNG 514 (635)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEE-EECCHHHHHHhcCEEEEEeCCC
Confidence 79999999999999999999999999999999999999999999874 345555 5677888999999999997 89
Q ss_pred eEE-EecCHHHH
Q 001957 402 QIV-YQGPRELV 412 (991)
Q Consensus 402 ~iv-~~G~~~~~ 412 (991)
+++ |.|+-++.
T Consensus 515 ~i~~~~g~y~~y 526 (635)
T PRK11147 515 KIGRYVGGYHDA 526 (635)
T ss_pred eEEEccCCHHHH
Confidence 986 45666554
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=256.07 Aligned_cols=240 Identities=21% Similarity=0.217 Sum_probs=187.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
+-++++||+.....+. ...-++ .+.+.+...- ..+.....+|+||||++++||.++|+|+|||||||||+
T Consensus 2 ~~I~~~~V~k~~~~~~--~~~~~~-------~~~~~~~~~~-~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlk 71 (249)
T COG1134 2 VVIKVSNVSKKFRIYH--EKSYSL-------KKRLKGLAKG-GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLK 71 (249)
T ss_pred cEEEeeceeEEEecch--hhhhhH-------HHHHHHHhcC-CCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHH
Confidence 3578889888876531 000111 1112222111 11445678999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCC
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (991)
+|+|.++|+ +|+|.++|+-..-+. -.--+-|++|.+||+.+-+.+.|... +
T Consensus 72 liaGi~~Pt---~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~G~~~----------~------- 122 (249)
T COG1134 72 LIAGIYKPT---SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLILGLTR----------K------- 122 (249)
T ss_pred HHhCccCCC---CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHhCccH----------H-------
Confidence 999999999 999999997432111 11235578999999999888765421 1
Q ss_pred CCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001957 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356 (991)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~ 356 (991)
+.+..++++++.-+|.+..|+.| +.+|-|++-|++.|.+...+|+||++||-.+-.|+
T Consensus 123 -----------------ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 123 -----------------EIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 12335677788888888887655 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhc
Q 001957 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419 (991)
Q Consensus 357 ~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~ 419 (991)
.-.....+.++++.+ ++ .+|+.++|+...+.++||++++|++|++.+.|.++++.++|+..
T Consensus 181 ~F~~K~~~rl~e~~~-~~-~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 181 AFQEKCLERLNELVE-KN-KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 999999999999865 34 55555677888999999999999999999999999999988753
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=249.63 Aligned_cols=131 Identities=31% Similarity=0.500 Sum_probs=117.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|. +.++|++|
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~~------------ 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--------VKIGYFEQ------------ 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--------EEEEEEcc------------
Confidence 4999999999999999999999999999999999999998 999999984 24555544
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
||
T Consensus 71 ------------------------------------------------------------------------------lS 72 (144)
T cd03221 71 ------------------------------------------------------------------------------LS 72 (144)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 89
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+||+||++||++|+.+|++++|||||+|||..++..+.+.|+++ +.|+++ ++|..+++.+++|++++|++|+
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~-~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVIL-VSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEE-EECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999875 245555 5667778889999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=251.79 Aligned_cols=179 Identities=28% Similarity=0.414 Sum_probs=155.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~ 240 (991)
....++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|.++|.+++... .++.+-|+.-++-+=++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 4567999999999999999999999999999999999999999 999999999987643 23667888888888899
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
|||.|||.|..+..+.... ..+.+.++.+||....|..++
T Consensus 90 LTa~ENL~F~~~~~~~~~~-------------------------------------~~i~~Al~~vgL~g~~dlp~~--- 129 (209)
T COG4133 90 LTALENLHFWQRFHGSGNA-------------------------------------ATIWEALAQVGLAGLEDLPVG--- 129 (209)
T ss_pred hhHHHHHHHHHHHhCCCch-------------------------------------hhHHHHHHHcCcccccccchh---
Confidence 9999999999876543110 123457889999999888775
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+||-||||||+|||.++.++++-+||||+++||......+-..+..-++ .|+.||.++|||.+.
T Consensus 130 --~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 130 --QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred --hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 7999999999999999999999999999999999999999998888765 688999999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=301.91 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=151.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. ...+++.
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~--------~~igyv~Q~~--~~~l~~~ 588 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK--------VRMAVFSQHH--VDGLDLS 588 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc--------eeEEEEeccc--cccCCcc
Confidence 35999999999999999999999999999999999999998 999998752 4689999974 3456666
Q ss_pred HHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 245 ETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 245 E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
++..+.. ... .+. ....+..+|+.+||.. ..+. .+.
T Consensus 589 ~~~~~~~~~~~-~~~------------------------------------~~~~i~~~L~~~gl~~~~~~~-----~~~ 626 (718)
T PLN03073 589 SNPLLYMMRCF-PGV------------------------------------PEQKLRAHLGSFGVTGNLALQ-----PMY 626 (718)
T ss_pred hhHHHHHHHhc-CCC------------------------------------CHHHHHHHHHHCCCChHHhcC-----Ccc
Confidence 6643321 110 000 0012456788999963 4443 456
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||..+...+++.|++. ++|+|+ ++|+...+..+||++++|.+|+
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIi-vSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLM-VSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEE-EECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999888763 345544 5677889999999999999999
Q ss_pred EE-EecCHHHHHH
Q 001957 403 IV-YQGPRELVLE 414 (991)
Q Consensus 403 iv-~~G~~~~~~~ 414 (991)
++ +.|+.++..+
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 98 7888776544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=297.48 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=154.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++|++|+...+ ..|+.
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~--------~~i~~~~q~~~~~-~~~~~ 81 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN--------WQLAWVNQETPAL-PQPAL 81 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCC-CCCHH
Confidence 45999999999999999999999999999999999999998 999999874 2489999965433 36776
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHH---H-hhhhhhhHHHHHHHHHcCCc-ccccccccCc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI---A-TEGQEANVITDYYLKVLGLD-VCADTMVGDE 319 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 319 (991)
+.+.-.... ...+.......... .+...+.... . ..+......++.+|+.+||. +..|..+
T Consensus 82 ~~v~~~~~~---------~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~--- 147 (638)
T PRK10636 82 EYVIDGDRE---------YRQLEAQLHDANER--NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV--- 147 (638)
T ss_pred HHHHHhhHH---------HHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch---
Confidence 655422110 00110000000000 0000000000 0 01112234577889999996 4566544
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+| .++|+...+.++||+|++|+
T Consensus 148 --~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvi-ivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 148 --SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLI-LISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred --hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEE-EEeCCHHHHHHhcCEEEEEe
Confidence 579999999999999999999999999999999999999999999874 34544 45678889999999999999
Q ss_pred CCeEE-EecCHHHH
Q 001957 400 DGQIV-YQGPRELV 412 (991)
Q Consensus 400 ~G~iv-~~G~~~~~ 412 (991)
+|+++ |.|+.+..
T Consensus 221 ~G~i~~~~g~~~~~ 234 (638)
T PRK10636 221 QQSLFEYTGNYSSF 234 (638)
T ss_pred CCEEEEecCCHHHH
Confidence 99996 66765543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=255.10 Aligned_cols=146 Identities=26% Similarity=0.357 Sum_probs=124.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+++++ +.+++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+.
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~---------i~~~~q~~--------- 70 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT---------PVYKPQYI--------- 70 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE---------EEEEcccC---------
Confidence 4688885 899999999999999999999999999999998 9999999853 56666520
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|...++.+++|++++|+++-.+
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii-vsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV-VEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE-EECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999986532355555 566777888899999999988777
Q ss_pred Ee--cCHHH
Q 001957 405 YQ--GPREL 411 (991)
Q Consensus 405 ~~--G~~~~ 411 (991)
+. |++..
T Consensus 152 ~~~~~~~~~ 160 (177)
T cd03222 152 YGIASQPKG 160 (177)
T ss_pred ceeccCCcc
Confidence 65 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=253.89 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=124.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+++++|++++|+|||||||||||++|.+ . +|+|.++|... .. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~-~~-~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLP-KF-SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCccc-cc-ccccEEEEhH----------
Confidence 3569999999999999999999999999999999963 3 89999988732 21 1234678776
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
.| .++.++|.. ..+ ..++
T Consensus 68 ~~--------------------------------------------------------~l~~~~L~~~~~~-----~~~~ 86 (176)
T cd03238 68 LQ--------------------------------------------------------FLIDVGLGYLTLG-----QKLS 86 (176)
T ss_pred HH--------------------------------------------------------HHHHcCCCccccC-----CCcC
Confidence 01 234556643 233 3456
Q ss_pred CCChhHhHHHHHHHHHhcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 323 GISGGQKKRVTTGEMMVGP--ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~--p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.||||||||++||++|+.+ |++++|||||+|||..++..+.+.|+++.+ .+.|+|++.| ...++ +.+|++++|.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH-~~~~~-~~~d~i~~l~~ 163 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEH-NLDVL-SSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-CHHHH-HhCCEEEEECC
Confidence 8999999999999999999 999999999999999999999999999864 5667666554 45554 68999999966
Q ss_pred CeE
Q 001957 401 GQI 403 (991)
Q Consensus 401 G~i 403 (991)
|+.
T Consensus 164 g~~ 166 (176)
T cd03238 164 GSG 166 (176)
T ss_pred CCC
Confidence 443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=237.48 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=153.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (991)
.....|-|||++|.+||++-|||||||||||||..+.|.+.+...++|++.+|++.++.... +|.+|..+|++.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 34569999999999999999999999999999999999999988899999999999987654 58999999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
+|.+||.|+.-..-. +...+..++..|+..||+...+. .+
T Consensus 93 sVg~Nl~fAlp~~~K-----------------------------------G~aRr~~a~aAL~~~gL~g~f~~-----dP 132 (213)
T COG4136 93 SVGQNLLFALPATLK-----------------------------------GNARRNAANAALERSGLDGAFHQ-----DP 132 (213)
T ss_pred ccccceEEecCcccc-----------------------------------cHHHHhhHHHHHHHhccchhhhc-----Ch
Confidence 999999998632111 11112235667889999887763 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
.+||||||-||++-|+|+..|+.++||||+|-||..-+.++.+..-.-++..+.-+|..+ |+..++
T Consensus 133 ~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VT-HD~~Dv 198 (213)
T COG4136 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVT-HDLQDV 198 (213)
T ss_pred hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-cccccC
Confidence 789999999999999999999999999999999999998888877666665566666554 555443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=295.99 Aligned_cols=182 Identities=24% Similarity=0.292 Sum_probs=147.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCcc-----ccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFV-----PQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~-----~~~~~ 228 (991)
..+|++++ .+++|++++|+|||||||||||++|+|.++|+ +|+|. ++|+++.... .+..+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46999999 99999999999999999999999999999998 99998 9998875321 11235
Q ss_pred EEEecCCCCCC---CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHH
Q 001957 229 AYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (991)
Q Consensus 229 ~yv~Q~d~~~~---~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (991)
+|.+|.....| ..||+|++.+.. ....++++++.
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~l~~ 199 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKVD-------------------------------------------ERGKLDEVVER 199 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhhh-------------------------------------------HHHHHHHHHHH
Confidence 66666533333 349999886310 00124568899
Q ss_pred cCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 306 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 306 lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
+||.+..|+.+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ +.| |+.++|..
T Consensus 200 l~l~~~~~~~~-----~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~t-vIivsHd~ 271 (590)
T PRK13409 200 LGLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKY-VLVVEHDL 271 (590)
T ss_pred cCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCE-EEEEeCCH
Confidence 99988777655 57999999999999999999999999999999999999999999999864 555 45556788
Q ss_pred chhHhhcCeEEEecCC
Q 001957 386 PETYDLFDDIILLSDG 401 (991)
Q Consensus 386 ~~~~~lfD~vilL~~G 401 (991)
.++..++|+|++|.+|
T Consensus 272 ~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 272 AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 8999999999999764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=300.25 Aligned_cols=257 Identities=21% Similarity=0.262 Sum_probs=192.0
Q ss_pred hHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC-CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
.....+||+.+..+...|.- ......+..-. |...+|.|+|+++.|...
T Consensus 1102 n~m~SVERv~eY~~~~~E~p---~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~--------------------------- 1151 (1381)
T KOG0054|consen 1102 NNMVSVERVLEYTDIPSEAP---LEIEESRPPPSWPSKGEIEFEDLSLRYRPN--------------------------- 1151 (1381)
T ss_pred hcchhhhHHHHHhcCCCCCC---CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC---------------------------
Confidence 34556788888777544410 11001110011 125899999999998532
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
--.+|||||++|+|||-++|+|..|||||||+++|-++..+. +|+|.+||.++.+... ++.++.|||++
T Consensus 1152 -----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1152 -----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred -----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 124999999999999999999999999999999999999998 9999999999988754 57899999966
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. ++..|||+||+=.-+. ..+.+. +++..... ....+ .++...|+.
T Consensus 1224 v-LFsGTvR~NLDPf~e~-----sD~~IW---------------------~ALe~~~L------k~~v~--~~p~~Ld~~ 1268 (1381)
T KOG0054|consen 1224 V-LFSGTVRFNLDPFDEY-----SDDEIW---------------------EALERCQL------KDVVS--SLPGGLDSE 1268 (1381)
T ss_pred c-eecCccccccCccccc-----CHHHHH---------------------HHHHHhCh------HHHHh--hCCcCCCce
Confidence 5 5678999999743211 011111 22211110 11122 566667888
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|. +....+|-||||-+++||||+++++||+|||+|+..|+.|-..|.+.||+-- ...+|++|-|... +.--+|||
T Consensus 1269 v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F---~dcTVltIAHRl~-TVmd~DrV 1343 (1381)
T KOG0054|consen 1269 VS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF---KDCTVLTIAHRLN-TVMDSDRV 1343 (1381)
T ss_pred ec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh---cCCeEEEEeeccc-hhhhcCeE
Confidence 86 4566799999999999999999999999999999999999999999999843 3455666666554 55558999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
+||++|+++++|+|.++++
T Consensus 1344 lVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEeeCCeEeecCChHHHHh
Confidence 9999999999999999974
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=234.90 Aligned_cols=202 Identities=29% Similarity=0.406 Sum_probs=153.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--------Cccc----cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--------EFVP----QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--------~~~~----~~~~~yv~Q 233 (991)
.--+||||.+.|||+++|+|.|||||||||++|++++.|+ .|+|.|.-.+-. +... +-.-|+|.|
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 3579999999999999999999999999999999999999 999999754321 1111 123589999
Q ss_pred CCCCCCCC------CHHHHHHH-HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc
Q 001957 234 HDNHIGEM------TVRETLAF-SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306 (991)
Q Consensus 234 ~d~~~~~l------TV~E~l~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 306 (991)
++.-=-.+ .|.|-+.- +++-.| + .......+|+..
T Consensus 97 nP~DGLRm~VSAG~NiGERlma~G~RHYG------------------------~--------------iR~~a~~WL~~V 138 (258)
T COG4107 97 NPRDGLRMQVSAGGNIGERLMAIGARHYG------------------------N--------------IRAEAQDWLEEV 138 (258)
T ss_pred CccccceeeeccCCccchhHHhhhhhhhh------------------------h--------------HHHHHHHHHHhc
Confidence 85321112 22222211 111000 0 011223467777
Q ss_pred CCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 307 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 307 gL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
.++... + ++.++..|||++||+.|||-|+..|++.||||||-|||.+-...++++++.+.+..+..+||. +|+..
T Consensus 139 EI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viV-THDl~ 213 (258)
T COG4107 139 EIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-THDLA 213 (258)
T ss_pred ccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEE-echhH
Confidence 765432 2 467899999999999999999999999999999999999999999999999998777666665 56777
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
-+.-++|+.++|.+|+++++|-.+.++
T Consensus 214 VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 214 VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhhhcceeecCCCEeccccccccc
Confidence 888899999999999999999888875
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=238.37 Aligned_cols=142 Identities=34% Similarity=0.549 Sum_probs=120.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+++|+.+++|++++|+||||||||||+++|+|.+++. +|+|+++|.++..... ++.++|++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~---------- 79 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVP---------- 79 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEe----------
Confidence 5999999999999999999999999999999999999988 9999999987653200 01111211
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
T Consensus 80 -------------------------------------------------------------------------------- 79 (157)
T cd00267 80 -------------------------------------------------------------------------------- 79 (157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||+||++||++++.+|++++|||||+|||..++..+.+.|+++.. .+.|+++ ++|...++..++|++++|++|+
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~-~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVII-VTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCcC
Confidence 2999999999999999999999999999999999999999999998765 3455544 5567778888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=271.61 Aligned_cols=217 Identities=26% Similarity=0.312 Sum_probs=163.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ ...++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 456999999999999999999999999999999999999998 99998753 2368999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCC---ChHHHHHH-HHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP---DIDVYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+.+.-+.... .+...+...... ..+++ ..+..... ....+-+.+..+..+|.-||++.. ++.+
T Consensus 84 ~~~v~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~--- 151 (530)
T COG0488 84 LDYVIEGFGEL-----RELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV--- 151 (530)
T ss_pred HHHHHhhhHHH-----HHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch---
Confidence 99998765321 111111111110 00111 00000000 111223345567788999999876 6555
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..||||||.||++|++|+.+|++|+|||||+.||..+...+-+.|++. .+ ++|.++|++..+-+.|++|+-++
T Consensus 152 --~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g--tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 152 --SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG--TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC--cEEEEeCCHHHHHHHhhheEEec
Confidence 479999999999999999999999999999999999999999999863 34 44556789999999999999999
Q ss_pred CCeEE-EecCHH
Q 001957 400 DGQIV-YQGPRE 410 (991)
Q Consensus 400 ~G~iv-~~G~~~ 410 (991)
.|++. |.|..+
T Consensus 225 ~g~l~~y~Gny~ 236 (530)
T COG0488 225 RGKLTPYKGNYS 236 (530)
T ss_pred CCceeEecCCHH
Confidence 99775 555544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=235.74 Aligned_cols=134 Identities=37% Similarity=0.578 Sum_probs=117.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCCCHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
|+|||+.|++|++++|+||||||||||+++|+|..++. +|+|.+||.++... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999987 99999999999772 2347899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|+. . +..++++++.+++.+..++.++.. ...|
T Consensus 78 ~~~---~--------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~-~~~L 109 (137)
T PF00005_consen 78 ENE---S--------------------------------------------DERIEEVLKKLGLEDLLDRKIGQR-ASSL 109 (137)
T ss_dssp HHH---H--------------------------------------------HHHHHHHHHHTTHGGGTGSBGTSC-GGGS
T ss_pred ccc---c--------------------------------------------cccccccccccccccccccccccc-cchh
Confidence 991 0 012456788899988888888644 4789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCC
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEIST 352 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTs 352 (991)
||||||||+||++|+.+|++++|||||+
T Consensus 110 S~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 110 SGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-27 Score=286.37 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=138.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.|++|+.++|+|||||||||||++|+|.. .|. +|+| +|+.|+. .....
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~---~g~I----------------~~~~Q~~-~g~~~ 249 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK---NCQI----------------LHVEQEV-VGDDT 249 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC---CCEE----------------EEEeccC-CCCCC
Confidence 34999999999999999999999999999999999974 122 4444 4454432 12334
Q ss_pred CHHHHHHHHHHhc-CC-CchhhhhHHHHHHHHH-----------cCCCCCCCh----HHHHHHH-HhhhhhhhHHHHHHH
Q 001957 242 TVRETLAFSARCQ-GV-GTRYEMLTELARREKA-----------AGIKPDPDI----DVYMKAI-ATEGQEANVITDYYL 303 (991)
Q Consensus 242 TV~E~l~f~~~~~-~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l 303 (991)
|+.|.+.-+..-. .. ................ .+. +..++ +...+.. ...+......++.+|
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGV-DKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-chHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 5544322110000 00 0000000000000000 000 00000 0000000 001123445677889
Q ss_pred HHcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 304 KVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 304 ~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
..+||. +..++. +..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ ++|+|++ +
T Consensus 329 ~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv-s 398 (718)
T PLN03073 329 AGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV-S 398 (718)
T ss_pred HHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE-E
Confidence 999996 334443 4689999999999999999999999999999999999999999999874 4555554 5
Q ss_pred cCCchhHhhcCeEEEecCCeEE-EecCHHHH
Q 001957 383 QPAPETYDLFDDIILLSDGQIV-YQGPRELV 412 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~G~iv-~~G~~~~~ 412 (991)
|+...+.++||+|++|++|+++ |.|+.++.
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 7788899999999999999996 77776643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=284.67 Aligned_cols=127 Identities=40% Similarity=0.702 Sum_probs=118.3
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEEc
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 930 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~in 930 (991)
.+..+.|+|+++.++.+.. ..+++|+||||.++||+++|+|||||||||||||+||||..+| .++|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999998876542 3579999999999999999999999999999999999999986 799999999
Q ss_pred CccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 931 G~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|++.+..+|++++|||+|+|...|++||||+|.|+|.||+|.+++.++|..-||+|
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~v 149 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEV 149 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999986
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=240.63 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=83.5
Q ss_pred HHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 301 YYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 301 ~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
+.++.++|.+ ..+ ..+..|||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ .+.|+
T Consensus 119 ~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~ti 192 (226)
T cd03270 119 GFLVDVGLGYLTLS-----RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTV 192 (226)
T ss_pred HHHHHCCCCccccc-----CccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 4688899975 344 455789999999999999999998 59999999999999999999999999865 46676
Q ss_pred EEEEecCCchhHhhcCeEEEe------cCCeEEEec
Q 001957 378 VISLLQPAPETYDLFDDIILL------SDGQIVYQG 407 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G 407 (991)
|++.|+ ..++ ++||++++| ++|+||++|
T Consensus 193 i~itH~-~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHD-EDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeC-HHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 666554 4555 699999999 999999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=242.05 Aligned_cols=197 Identities=22% Similarity=0.246 Sum_probs=140.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-----cCcC-----CC--CCee------eEEEECCeeCCCcccc-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-----GKLD-----PT--LKVS------GTVTYNGHDMDEFVPQ- 225 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La-----G~~~-----~~--~~~~------G~I~~nG~~~~~~~~~- 225 (991)
.+-|+|||..|+.|++++|.|+||||||||++.+. ..+. +. -.+. --|.++..++......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998551 1111 11 0011 2356666555321100
Q ss_pred ----------------------------ceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCC
Q 001957 226 ----------------------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277 (991)
Q Consensus 226 ----------------------------~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (991)
..+.|..++...+..|||.|++.|......
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~---------------------- 145 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK---------------------- 145 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh----------------------
Confidence 012234444444567777777777543210
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCC
Q 001957 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTG 353 (991)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsG 353 (991)
......+|+.+||.. ..+ +..+.||||||||+.||++|+.+ |++++|||||+|
T Consensus 146 ------------------~~~~~~~L~~vgL~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsg 202 (261)
T cd03271 146 ------------------IARKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTG 202 (261)
T ss_pred ------------------HHHHHHHHHHcCCchhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCC
Confidence 012345788999976 344 44568999999999999999996 799999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPR 409 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~ 409 (991)
||+.....+++.|+++.+ .+.|+|++.|+ ...+ +.+|+++.| .+|+++++|++
T Consensus 203 LD~~~~~~l~~~L~~l~~-~g~tvIiitH~-~~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 203 LHFHDVKKLLEVLQRLVD-KGNTVVVIEHN-LDVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999999999865 46677666554 4454 579999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=217.42 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=151.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee--CC--Ccc-------ccceEEEEe
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--MD--EFV-------PQRTAAYIS 232 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~--~~--~~~-------~~~~~~yv~ 232 (991)
...+|+|||+.++.||+++|=|||||||||||++|-|-|.|+ +|+|.+.-.. ++ ... .++++|||+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 467999999999999999999999999999999999999999 9999986432 11 111 236889999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|---.+|...-.|-++-.+--+|... +.+......+|..|+|++..
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~----------------------------------~~a~~~a~~Ll~rLnlperL 145 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPR----------------------------------EVARAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 97666777666665554443333321 11122344578889988643
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
=. -.+.+.||||+|||.|||.++.+-+||+|||||+.||..++.-+++.|++. + ..++.++-|-|+.+--...+
T Consensus 146 W~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-K-a~GaAlvGIFHDeevre~va 219 (235)
T COG4778 146 WS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-K-ARGAALVGIFHDEEVREAVA 219 (235)
T ss_pred hc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-H-hcCceEEEeeccHHHHHHHh
Confidence 22 235689999999999999999999999999999999999999999999984 4 46788888888877777889
Q ss_pred CeEEEecC
Q 001957 393 DDIILLSD 400 (991)
Q Consensus 393 D~vilL~~ 400 (991)
||++-+..
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99988753
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=228.51 Aligned_cols=167 Identities=15% Similarity=0.191 Sum_probs=125.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC------CCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT------LKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~------~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++++.+++| +++|+|||||||||||++|+|.+.+. ....|++.++|++.......+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 99999999999999999999987553 122457888888765433357899999987665
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|... .. ..++++++. .+..+ ..+.
T Consensus 89 ------~~~~-----~~-------------------------------------~~~~~~l~~---~~~~~-----~~~~ 112 (197)
T cd03278 89 ------YSII-----SQ-------------------------------------GDVSEIIEA---PGKKV-----QRLS 112 (197)
T ss_pred ------eeEE-----eh-------------------------------------hhHHHHHhC---CCccc-----cchh
Confidence 2110 00 012223333 23333 3456
Q ss_pred CCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++.+ +.++|++ +|.... .+.+|+++.+
T Consensus 113 ~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIii-tH~~~~-~~~~d~v~~~ 188 (197)
T cd03278 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVI-THRKGT-MEAADRLYGV 188 (197)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEE-ECCHHH-HhhcceEEEE
Confidence 89999999999999986 57799999999999999999999999999753 4565555 455544 5789999999
Q ss_pred cC
Q 001957 399 SD 400 (991)
Q Consensus 399 ~~ 400 (991)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 63
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-25 Score=219.01 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=163.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (991)
-|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.++..... .|..+|..|+..-.+.|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 36778999999999999999999999999999999875 8999999999865432 3667999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
...|.+.- + + +.....++++...++|++... +++.+
T Consensus 90 ~~YL~L~q----P---------------------~--------------~~~a~~i~~i~~~L~l~DKL~-----Rs~~q 125 (248)
T COG4138 90 WHYLTLHQ----P---------------------D--------------KTRTELLNDVAGALALDDKLG-----RSTNQ 125 (248)
T ss_pred hhhhhhcC----c---------------------h--------------HHHHHHHHHHHhhhcccchhh-----hhhhh
Confidence 99887642 1 0 001123567788899976654 56679
Q ss_pred CChhHhHHHHHHHHHhc-----C--CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 324 ISGGQKKRVTTGEMMVG-----P--ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~-----~--p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|||||-|||-+|-..+. | .++|+||||-++||....-.+-..|.+++. .|.++|++ .|+...+.+.+|++.
T Consensus 126 LSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims-~HDLNhTLrhA~~~w 203 (248)
T COG4138 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMS-SHDLNHTLRHAHRAW 203 (248)
T ss_pred cCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEe-ccchhhHHHHHHHHH
Confidence 99999999999966542 2 468999999999999999999999999986 57777776 578999999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|+.|++..+|.+++++
T Consensus 204 LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 204 LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHhcCeEEeecchhhhc
Confidence 99999999999999986
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=247.24 Aligned_cols=189 Identities=28% Similarity=0.345 Sum_probs=151.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lT 242 (991)
.+.+++++|+.|.+|+.++|+||||+|||||||+|+|...|. +|+|.+.- .-.+||..|+. .+.++.|
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~--------~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE--------TVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC--------ceEEEEEEehhhhcCccCc
Confidence 367999999999999999999999999999999999999987 99998752 23589999985 4457889
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~ 321 (991)
+.|++.-...-. .+..+...|..++++.- ..+ .+
T Consensus 403 ~~d~l~~~~~~~----------------------------------------~e~~~r~~L~~f~F~~~~~~~-----~v 437 (530)
T COG0488 403 VLEELSEGFPDG----------------------------------------DEQEVRAYLGRFGFTGEDQEK-----PV 437 (530)
T ss_pred HHHHHHhhCccc----------------------------------------cHHHHHHHHHHcCCChHHHhC-----ch
Confidence 998886432100 01123456888888642 333 44
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||.||.+|..++.+|.+|+|||||+.||..+...+-+.|.+. .+|+|++ +|++..+-.++++++++.+
T Consensus 438 ~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~V-SHDr~Fl~~va~~i~~~~~- 511 (530)
T COG0488 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLV-SHDRYFLDRVATRIWLVED- 511 (530)
T ss_pred hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEE-eCCHHHHHhhcceEEEEcC-
Confidence 689999999999999999999999999999999999999999999874 4666664 5788999999999999998
Q ss_pred eEE-EecCHHHHHH
Q 001957 402 QIV-YQGPRELVLE 414 (991)
Q Consensus 402 ~iv-~~G~~~~~~~ 414 (991)
++. +.|..++..+
T Consensus 512 ~~~~~~g~y~~y~~ 525 (530)
T COG0488 512 KVEEFEGGYEDYLE 525 (530)
T ss_pred ceeEcCCCHHHHHH
Confidence 554 4477666543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=241.24 Aligned_cols=204 Identities=21% Similarity=0.400 Sum_probs=162.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecC---CCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQH---DNHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~---d~~~~ 239 (991)
-++||||++++||+++|-|--|||+|-|+++|.|..++. +|+|.+||+++.-..++ .-++||+.+ +-++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 478999999999999999999999999999999987776 99999999998765443 468999965 67899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (991)
.++|++|+.++. +....... .+. ..+....++...+.|++.. ..+
T Consensus 351 ~~sI~~Ni~l~~-l~~~~~~~-~i~---------------------------~~~e~~~~~~~~~~l~Ik~~s~~----- 396 (500)
T COG1129 351 DMSIAENITLAS-LRRFSRRG-LID---------------------------RRKERALAERYIRRLRIKTPSPE----- 396 (500)
T ss_pred CCcHHHheehHh-hhhhcccc-ccC---------------------------hHHHHHHHHHHHHhcCcccCCcc-----
Confidence 999999999982 22110000 000 0011234566777888753 223
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..||||.+|+|.||+.|..+|++|||||||.|.|.-+..+|.+.|++++. .|.++|+ ++...+|+..+||||+||
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~-iSSElpEll~~~DRIlVm 474 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILM-ISSELPELLGLSDRILVM 474 (500)
T ss_pred chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEE-EeCChHHHHhhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999997 3555444 556899999999999999
Q ss_pred cCCeEEEecCH
Q 001957 399 SDGQIVYQGPR 409 (991)
Q Consensus 399 ~~G~iv~~G~~ 409 (991)
++|+++..=+.
T Consensus 475 ~~Gri~~e~~~ 485 (500)
T COG1129 475 REGRIVGELDR 485 (500)
T ss_pred ECCEEEEEecc
Confidence 99999875443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=226.58 Aligned_cols=185 Identities=21% Similarity=0.286 Sum_probs=125.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----------------CCCCCeee--------EEEECCeeC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----------------DPTLKVSG--------TVTYNGHDM- 219 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~----------------~~~~~~~G--------~I~~nG~~~- 219 (991)
..++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+.
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCCc
Confidence 45788887 7899999999999999999998432 222 33 555655321
Q ss_pred ---C--CccccceEEEEecCCCCCC-CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhh
Q 001957 220 ---D--EFVPQRTAAYISQHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQ 293 (991)
Q Consensus 220 ---~--~~~~~~~~~yv~Q~d~~~~-~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (991)
. +...++.++|++|+..+++ ..|..|...+...+ +...... ..+.+
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~-----------~~~~~---------------- 138 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNP-----------YYIVP---------------- 138 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCC-----------cEEEE----------------
Confidence 1 1223466888888766666 46776665554433 2210000 00000
Q ss_pred hhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
.+.+.+.+++....+ ..++.||||||||++||++|+ .+|++++|||||+|||+.++..+++.|+++
T Consensus 139 -----qg~i~~l~~l~~~~~-----~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 139 -----QGKINSLTNMKQDEQ-----QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred -----cCchHHhhhcccccc-----ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 011233444543333 345689999999999999996 468999999999999999999999999987
Q ss_pred hhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 370 IHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 370 ~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+ +++|+++||. +++.+++|++++|.
T Consensus 209 ~~---~~~ii~~~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 209 SD---GAQFITTTFR-PELLEVADKFYGVK 234 (243)
T ss_pred hC---CCEEEEEecC-HHHHhhCCEEEEEE
Confidence 43 3556666665 67889999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-24 Score=225.05 Aligned_cols=185 Identities=15% Similarity=0.224 Sum_probs=132.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
..++|+++++ ++++|+||||||||||+++|.-. +|.+.... ..+.++|++|+...++.+|+
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~-~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKM-RQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHh-hhhhHHHHhcCCCCCCCCce
Confidence 4568999987 89999999999999999999722 23322211 12467888988888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|.+.+..+..+.. .+ ...++..... ......+++++.++|++..++.+ +.
T Consensus 77 ~~~~~~~~~~~~~~----~l-------~~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~-----~~ 127 (212)
T cd03274 77 CSVEVHFQEIIDKP----LL-------KSKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNI-----SN 127 (212)
T ss_pred EEEEEEEEeCCCHH----HH-------HHCCcCCCCC-------------ceEEcCCcEEEeeccccccccch-----hh
Confidence 99887765432210 00 0001100000 00000134567788887777654 57
Q ss_pred CChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 324 ISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 324 LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+|+|||||++||++++ .+|++++|||||+|||+.+...+.+.|+++. .++++|+.+|+ +++.++||++++|+
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~--~~~~~~~d~v~~~~ 203 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLR--NNMFELADRLVGIY 203 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECc--HHHHHhCCEEEEEE
Confidence 9999999999999996 3689999999999999999999999999974 34666666654 58899999999996
Q ss_pred C
Q 001957 400 D 400 (991)
Q Consensus 400 ~ 400 (991)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 3
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=212.02 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=121.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHh----cCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-----CCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALA----GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-----NHIGE 240 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~La----G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-----~~~~~ 240 (991)
..++.+.+| +++|+|||||||||||++|. |...++ +|.+..+...+.....+..+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 344567788 99999999999999999995 887776 565552222233333346788999876 33445
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.|++.+... + .++..+ ++.
T Consensus 91 ~~~~~~~~~~~~-----------------~---------------------------~~~~~~--------------~~~ 112 (204)
T cd03240 91 LAILENVIFCHQ-----------------G---------------------------ESNWPL--------------LDM 112 (204)
T ss_pred hhHhhceeeech-----------------H---------------------------HHHHHH--------------hcC
Confidence 688888765310 0 001111 244
Q ss_pred cCCCChhHhHH------HHHHHHHhcCCcEeEEeCCCCCCCHHHHH-HHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 321 IRGISGGQKKR------VTTGEMMVGPALALFMDEISTGLDSSTTF-QIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 321 ~~~LSGGqrqR------vsia~~L~~~p~vLllDEPTsGLD~~t~~-~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
++.||+||||| +++|++++.+|+++++||||++||+.++. .+.+.|+++.+..+.++|++.|+ . +....+|
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~-~-~~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD-E-ELVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec-H-HHHhhCC
Confidence 57899999996 78899999999999999999999999999 99999998865336677776665 3 3457899
Q ss_pred eEEEecC
Q 001957 394 DIILLSD 400 (991)
Q Consensus 394 ~vilL~~ 400 (991)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999953
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=218.68 Aligned_cols=183 Identities=18% Similarity=0.229 Sum_probs=127.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe-eCCCc-----cccceEEEEecCC---------CCCCCCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-DMDEF-----VPQRTAAYISQHD---------NHIGEMT 242 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~-~~~~~-----~~~~~~~yv~Q~d---------~~~~~lT 242 (991)
..+++|+|||||||||||++|++.+.+. ..|++.+.|. ++-.. .....+.+++|++ ...+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998764 1457777766 32111 1124788999984 3456789
Q ss_pred HHHHHHHHHHhcC-CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc-------
Q 001957 243 VRETLAFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (991)
Q Consensus 243 V~E~l~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (991)
|.+++.+...... ...+. .....++.+|+.+||......
T Consensus 103 V~r~I~~~~~~~~~in~~~---------------------------------~~~~~v~~~L~~vgL~~~~~~~~i~Qg~ 149 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHR---------------------------------AQQQRVQDLFQSVQLNVNNPHFLIMQGR 149 (251)
T ss_pred EEEEEEcCCceEEEECCEE---------------------------------eeHHHHHHHHHHcCCCCCCceEEEeehH
Confidence 9988866432211 00000 001224455666666411000
Q ss_pred --------cccCcccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 315 --------MVGDEMIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 315 --------~vg~~~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
..-+..+..||||||||++||++|+ .+|++++|||||+|||..+...+.+.|+++. .+.++|++.|
T Consensus 150 v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH 227 (251)
T cd03273 150 ITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSL 227 (251)
T ss_pred HHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEEC
Confidence 0112456789999999999999997 6889999999999999999999999999974 3555666554
Q ss_pred cCCchhHhhcCeEEEec
Q 001957 383 QPAPETYDLFDDIILLS 399 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~ 399 (991)
. +++.+.+|+++-+.
T Consensus 228 ~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 228 K--EGMFNNANVLFRTR 242 (251)
T ss_pred C--HHHHHhCCEEEEEE
Confidence 4 68889999998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=226.17 Aligned_cols=180 Identities=24% Similarity=0.395 Sum_probs=139.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
..|++.++.++||+-+.|.||||||||||+++|+|+-+-. +|+|.+- ....+-|+||.+. +|..|.||
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P--------~~~~~lflpQ~PY-~p~GtLre 474 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP--------ADSALLFLPQRPY-LPQGTLRE 474 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC--------CCCceEEecCCCC-CCCccHHH
Confidence 6899999999999999999999999999999999999876 7887653 2345789999765 66779999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc-CcccCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG-DEMIRGI 324 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg-~~~~~~L 324 (991)
-|.+....... .+..+.++|...||++..+..=+ ++.-+-|
T Consensus 475 ~l~YP~~~~~~--------------------------------------~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vL 516 (604)
T COG4178 475 ALCYPNAAPDF--------------------------------------SDAELVAVLHKVGLGDLAERLDEEDRWDRVL 516 (604)
T ss_pred HHhCCCCCCCC--------------------------------------ChHHHHHHHHHcCcHHHHHHHhccCcHhhhc
Confidence 99885321100 01123456778888776554322 1245679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
|+||||||++||.|+++|+++||||.|++||..+...+.+.|++-. -.++||++.|. +....+.++.+-+.
T Consensus 517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l---p~~tvISV~Hr-~tl~~~h~~~l~l~ 587 (604)
T COG4178 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL---PDATVISVGHR-PTLWNFHSRQLELL 587 (604)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---CCCEEEEeccc-hhhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999999743 35677777654 46667777765553
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-21 Score=236.72 Aligned_cols=106 Identities=25% Similarity=0.259 Sum_probs=89.4
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
...|+.+||.. ..+ +.+..||||||||+.||++|+.+| ++++|||||+|||..+...+++.|+++.+ .+.
T Consensus 811 l~~L~~vgL~~l~l~-----~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~ 884 (943)
T PRK00349 811 LQTLVDVGLGYIKLG-----QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGN 884 (943)
T ss_pred HHHHHHCCCCccccc-----CCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45788899975 344 345689999999999999999999 99999999999999999999999999865 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++.|+ ...+ ..+|+|+.| .+|++++.|+++++.
T Consensus 885 TVIiitH~-~~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 885 TVVVIEHN-LDVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEEEecC-HHHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 76666554 4454 689999999 799999999999875
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=213.25 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC-CCcccc----ceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVPQ----RTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~-~~~~~~----~~~~yv~Q~d---~ 236 (991)
...+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ ....+. .-++|||++. -
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 56899999999999999999999999999999999999877 89999999997 333332 4689999864 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+.+|+.||+.+...-..+-.+... -+. ......+..+++.++...+.-
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~----------------l~~-----------~~i~~~a~~li~~fdVr~~~~--- 397 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGF----------------LDR-----------RAIRKFARELIEEFDVRAPSP--- 397 (501)
T ss_pred cccCccHHHHhhhhhccccccccccc----------------cCH-----------HHHHHHHHHHHHHcCccCCCC---
Confidence 67899999999887532211111000 011 112234556778888763321
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
....+.||||++||+-+||.|..+|++|+..+||.|||..++..|.+.|.+.++ .++.|+.+....+|+++++|+|.
T Consensus 398 -~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~--~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 398 -DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD--AGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred -CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh--cCCEEEEEehhHHHHHHhhheee
Confidence 134578999999999999999999999999999999999999999999999764 45566667789999999999999
Q ss_pred EecCCeEEEecCHHH
Q 001957 397 LLSDGQIVYQGPREL 411 (991)
Q Consensus 397 lL~~G~iv~~G~~~~ 411 (991)
+|++|+++...++++
T Consensus 475 Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 475 VIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeCCceeccccccc
Confidence 999999999888765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=205.23 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=116.0
Q ss_pred eceEEEEe-CCeEEEEEcCCCCcHHHHHHHHhcCc-CCCCCeeeEEEEC--CeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 169 KDVSGVIK-PGRLTLLLGPPSSGKTTLLLALAGKL-DPTLKVSGTVTYN--GHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 169 ~~vs~~i~-~Ge~~allGpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~n--G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+ ...+........+++++|++.... ++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~ 92 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE 92 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE
Confidence 45555433 58999999999999999999999644 222 3333332 111111222456888998763211 111
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
... +.. .+.+.+. ..+...++.+..+ ..+..|
T Consensus 93 r~~-------gl~-----------------------~~~~~~~-------------~~l~~g~l~~~l~-----~~~~~l 124 (213)
T cd03279 93 RSR-------GLD-----------------------YDQFTRI-------------VLLPQGEFDRFLA-----RPVSTL 124 (213)
T ss_pred Eec-------CCC-----------------------HHHHHHh-------------hhhhhcchHHHhc-----CCcccc
Confidence 111 110 0000000 0112222322222 445689
Q ss_pred ChhHhHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 325 SGGQKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 325 SGGqrqRvsia~~L~~----------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
|||||||+++|++|+. +|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|....+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~i-tH~~~~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVI-SHVEELKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ECchHHHHhhCcE
Confidence 9999999999999974 6789999999999999999999999998854 35555555 5566788899999
Q ss_pred EEEecCCe
Q 001957 395 IILLSDGQ 402 (991)
Q Consensus 395 vilL~~G~ 402 (991)
+++|++|.
T Consensus 203 i~~~~~~~ 210 (213)
T cd03279 203 LEVIKTPG 210 (213)
T ss_pred EEEEecCC
Confidence 99999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=213.18 Aligned_cols=217 Identities=22% Similarity=0.293 Sum_probs=139.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC-CH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM-TV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l-TV 243 (991)
+.+++|+++.+.+||-.+|+|||||||||+|++|+|...|. .-.+- +....++ ...... +|
T Consensus 88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d--------------~y~ls~e-~~ps~~~av 149 (614)
T KOG0927|consen 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHID--------------FYLLSRE-IEPSEKQAV 149 (614)
T ss_pred ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccc--------------hhhhccc-CCCchHHHH
Confidence 45899999999999999999999999999999999998874 11111 1111111 111122 22
Q ss_pred HHHHHHHHHhcCCCchhhhh-HHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 244 RETLAFSARCQGVGTRYEML-TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
.+-+.+....+ .+.+.. .++.... .+...+.-.+.+.....+.....+..+-.+|..+|.. +.++. ..
T Consensus 150 ~~v~~~~~~e~---~rle~~~E~l~~~~--d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-----~~ 219 (614)
T KOG0927|consen 150 QAVVMETDHER---KRLEYLAEDLAQAC--DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-----KV 219 (614)
T ss_pred HHHhhhhHHHH---HHHHHHHHHHHhhc--cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH-----Hh
Confidence 22222322111 001100 0010000 0000001112222223334444555566677777753 44443 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.++|||+|.|+++||+|..+|.+|+|||||+|||..+..-+-+.|.+. ...+++.+.|+.+.+-..|.+|+-|.++
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhhhhhHhhhhheeccc
Confidence 689999999999999999999999999999999999999999988774 2324445567888999999999999999
Q ss_pred e-EEEecCHHHHH
Q 001957 402 Q-IVYQGPRELVL 413 (991)
Q Consensus 402 ~-iv~~G~~~~~~ 413 (991)
+ +.|.|+.+...
T Consensus 296 kl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 296 KLIYYEGNYDQYV 308 (614)
T ss_pred ceeeecCCHHHHh
Confidence 9 56778776543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=241.62 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=88.8
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHh---cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMV---GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~---~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
.|+.+||.+. .+. .+..|||||||||.||++|+ .+|++|+|||||+|||..+...+++.|+++.+ .+.|+
T Consensus 792 ~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TV 865 (1809)
T PRK00635 792 ALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTV 865 (1809)
T ss_pred HHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 6788999764 453 45689999999999999997 69999999999999999999999999999865 46665
Q ss_pred EEEEecCCchhHhhcCeEEEec------CCeEEEecCHHHHHH
Q 001957 378 VISLLQPAPETYDLFDDIILLS------DGQIVYQGPRELVLE 414 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL~------~G~iv~~G~~~~~~~ 414 (991)
|+ ++|....+ +.+|+|++|. +|+++..|+++++..
T Consensus 866 Ii-IsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 866 VI-IEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EE-EeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 55 45566666 8999999996 799999999998753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=227.23 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=87.1
Q ss_pred HHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhc---CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVG---PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~---~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..+|+.+||... .+ +..+.|||||||||.||++|+. +|++++|||||+|||+.+...+++.|+++.. .+.
T Consensus 809 l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~ 882 (924)
T TIGR00630 809 LQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGN 882 (924)
T ss_pred HHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 457888899642 33 3456899999999999999997 5999999999999999999999999999865 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~ 412 (991)
|+|++.| ....+ ..+|+|++| .+|++++.|+++++
T Consensus 883 TVIvi~H-~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 883 TVVVIEH-NLDVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEEeC-CHHHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 6666554 44455 679999999 79999999998865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-21 Score=233.78 Aligned_cols=128 Identities=34% Similarity=0.490 Sum_probs=107.8
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEEcCc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGY 932 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~inG~ 932 (991)
..+.|.++. +++-.+--+ .++++.+|+||||.++||+++||||||||||||||++|+||.+.+ ..+|+|++||.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~ 90 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCR----ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90 (617)
T ss_pred ccchhhhhh-hhccccccc----ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 345677776 554322111 123578999999999999999999999999999999999998765 47899999999
Q ss_pred cCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 933 ~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
+.....++|.+|||+|+|.|.|++||||+|.|+|.+|+|.+++.+++...|+++
T Consensus 91 ~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~ 144 (617)
T TIGR00955 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEV 144 (617)
T ss_pred ECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 987678999999999999999999999999999999999999988887776654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-20 Score=184.93 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=165.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCe-eeEEEECCeeCCCcccc-------ceEEEEecC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ-------RTAAYISQH 234 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~-~G~I~~nG~~~~~~~~~-------~~~~yv~Q~ 234 (991)
+..+++++||+++..||+-+|+|.||||||-..|+|+|..+.+-.+ .-+..+++.++-.+.++ +.+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4467999999999999999999999999999999999997653222 23456666666554443 356789998
Q ss_pred CC--CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 DN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+. +-|.-+|...|--..-......+ ..... .+ .+...-++|..+|+.+..
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgr--WWq~F----------------~W----------rKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGR--WWQRF----------------GW----------RKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccch--Hhhhh----------------ch----------hHHHHHHHHHHhccccHH
Confidence 64 33444443333211100000000 00000 00 111234578899999888
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
|-+ ..++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.++.+|.+.|.++.+ .++|+|+.+.|+...+-+.|
T Consensus 150 DIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ-n~~TtILL~s~Dl~~is~W~ 226 (330)
T COG4170 150 DIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ-NSNTTILLISHDLQMISQWA 226 (330)
T ss_pred HHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc-cCCceEEEEcccHHHHHHHh
Confidence 755 467889999999999999999999999999999999999999999999999865 56777777889999999999
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|-||.-|+-++.++.+++++
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999999874
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-21 Score=206.51 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=143.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 243 (991)
=+..||++|+.||++-|+|.||||||||+++|.|++.|+ +|+|.+||.+++...+. +..+-|+-|-.+|+. ++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~-ll 413 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ-LL 413 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHh-hh
Confidence 367899999999999999999999999999999999999 99999999999765432 333444442222221 11
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++.. ......++..|+.|.|.+.-.-+=|+-..-.
T Consensus 414 -----------~~e~----------------------------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 414 -----------GPEG----------------------------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred -----------CCcc----------------------------------CCChHHHHHHHHHHHHhhhhcccCCcccccc
Confidence 1100 0001234556667766654333223333457
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||-|||||++.--||+-+.+|+++||=.+--||.-+..+.+.+--+.++.|+|++...| + +.-|..+||++.+.+|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH-D-d~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH-D-DHYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec-C-chhhhhHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999999888877777777666554 3 367899999999999999
Q ss_pred EEecC
Q 001957 404 VYQGP 408 (991)
Q Consensus 404 v~~G~ 408 (991)
++.-+
T Consensus 527 ~e~tg 531 (546)
T COG4615 527 SELTG 531 (546)
T ss_pred eeccc
Confidence 98653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=210.28 Aligned_cols=186 Identities=24% Similarity=0.303 Sum_probs=139.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC--CCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH--DNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~--d~~~~~lTV 243 (991)
.++++++|-|.+++-++++||||+|||||||++.|.+.|. .|.|.-.-+. ..++-.|+ +.+.-..++
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSHN--------KLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccccc--------cchhhhhhhHhhcCcchhH
Confidence 6999999999999999999999999999999999999998 8888654332 22333443 333334555
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
-|++.=... + ......+..+|..+||..-.++ ...++
T Consensus 473 le~~~~~~~-------------------------~--------------~~~~e~~r~ilgrfgLtgd~q~----~p~~~ 509 (614)
T KOG0927|consen 473 LEFMMPKFP-------------------------D--------------EKELEEMRSILGRFGLTGDAQV----VPMSQ 509 (614)
T ss_pred HHHHHHhcc-------------------------c--------------cchHHHHHHHHHHhCCCccccc----cchhh
Confidence 555432110 0 0011234568999999855443 34679
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||+|||+||..|+.++.+|.+|+|||||+|||..+...+-+.|.++ .+++|+ ++|+.-.+-+.+++|.+..+|.+
T Consensus 510 LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~-vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 510 LSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVL-VSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred cccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceee-eechhhHHHHHHHHhHhhccCce
Confidence 9999999999999999999999999999999999999999999874 334444 35788888899999999987755
Q ss_pred -EEecCHH
Q 001957 404 -VYQGPRE 410 (991)
Q Consensus 404 -v~~G~~~ 410 (991)
.+.|...
T Consensus 585 ~~~~G~i~ 592 (614)
T KOG0927|consen 585 TKWDGDIE 592 (614)
T ss_pred eecCccHH
Confidence 4666544
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=226.98 Aligned_cols=132 Identities=32% Similarity=0.557 Sum_probs=108.1
Q ss_pred CcceeecceEEEeeCchhhh--------------hcc--ccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 853 PHSLTFDEVVYSVDMPEEMK--------------VQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k--------------~~g--~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
+.++.|.|++|.++...... ..+ ...+++++|+|||+.++||+++||||||||||||||++|||
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999997653100 000 01124689999999999999999999999999999999999
Q ss_pred cccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 917 Rkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
+...+..+|+|.+||++... ...+.+|||+|+|.+.|.+||+|+|.|+|.+|+|.+++.+++...+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~ 184 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES 184 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 97655579999999998753 345668999999999999999999999999999988887776665554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=200.55 Aligned_cols=170 Identities=26% Similarity=0.321 Sum_probs=133.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (991)
.|.|..||+++++||||-||||+.++|||.++|+ +|. .. .-.++|=||.-.--...||++-|.-..
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 4556667889999999999999999999999998 776 11 234778888655557899999876554
Q ss_pred HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHH
Q 001957 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (991)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (991)
+-. .+ .+....++++-|.|+...|..| .+|||||.||
T Consensus 427 ~~~-~~-------------------------------------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQR 463 (591)
T COG1245 427 RSA-FG-------------------------------------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQR 463 (591)
T ss_pred hhh-cc-------------------------------------cchhHHhhcCccchHHHHhccc-----ccCCchhHHH
Confidence 321 00 0112234677788888777655 5799999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
|+||.+|..++++.+||||++-||++.+..+-+.+|+.+...++|.++ +.|+..-+--+.|++++..
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v-VdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV-VDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE-EecceehhhhhhceEEEEe
Confidence 999999999999999999999999999999999999998865555555 5777777777889988774
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=190.17 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=115.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----ccccceEEEEecCCCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~~~~~~~~yv~Q~d~~~~~lT 242 (991)
-++++++.+.+| +++|+|||||||||||.+|.-.+... .. ...-|..+.+ -.....+.+++|+.....
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~---~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK---AS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC---cc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 347788888888 88999999999999999997443221 00 0011221111 111245667777654333
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+ ... ... ...++++|+. .+..+ +.++
T Consensus 83 ---~-----~~~----------~~~----------------------------~~~~~~~l~~---~~~~~-----~~~~ 108 (198)
T cd03276 83 ---N-----PLC----------VLS----------------------------QDMARSFLTS---NKAAV-----RDVK 108 (198)
T ss_pred ---C-----cCC----------HHH----------------------------HHHHHHHhcc---ccccC-----Cccc
Confidence 0 000 000 0112334444 34444 3456
Q ss_pred CCChhHhHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhc-cCceEEEEEecCCchhHhhcCeEEE
Q 001957 323 GISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI-NSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L----~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~-~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.||||||||++||++| +.+|++++|||||+|||..++..+.+.|+++++. .+.++|+.++|...++.++ |+|.+
T Consensus 109 ~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~ 187 (198)
T cd03276 109 TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV 187 (198)
T ss_pred ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE
Confidence 8999999999999999 5899999999999999999999999999997653 1444555566778788776 99999
Q ss_pred ecCCe
Q 001957 398 LSDGQ 402 (991)
Q Consensus 398 L~~G~ 402 (991)
|..|+
T Consensus 188 ~~~~~ 192 (198)
T cd03276 188 FRMKD 192 (198)
T ss_pred EEecC
Confidence 98754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=193.47 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=65.3
Q ss_pred cCCCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..||||||||++||++++. +|++++|||||+|||..+...+.+.|+++++ .+.++|++.| . .+..+.+|+++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH-~-~~~~~~~d~i~ 229 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISL-K-EEFFSKADALV 229 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEEC-C-HHHHhhCCeEE
Confidence 37899999999999999985 4899999999999999999999999999864 3566666554 4 57789999999
Q ss_pred Eec
Q 001957 397 LLS 399 (991)
Q Consensus 397 lL~ 399 (991)
+|.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=170.41 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=145.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC---ccccceEEEEec---------
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---FVPQRTAAYISQ--------- 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~~~~~~~~yv~Q--------- 233 (991)
+++-|+|+.++.|.-++++|.||||||||||+|+|.---. .|.|.++|.+.-. ........|..-
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~a 104 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIA 104 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEeccccccccccc
Confidence 4899999999999999999999999999999999985443 6899999986411 111122334332
Q ss_pred -CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 234 -HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 234 -~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+-.+...+++ |.+-|+..- .+. .+-|.++++|.++-.
T Consensus 105 gevplq~D~sa-e~mifgV~g---------------------------------------~dp-~Rre~LI~iLDIdl~- 142 (291)
T KOG2355|consen 105 GEVPLQGDISA-EHMIFGVGG---------------------------------------DDP-ERREKLIDILDIDLR- 142 (291)
T ss_pred ccccccccccH-HHHHhhccC---------------------------------------CCh-hHhhhhhhheeccce-
Confidence 1122234444 333343211 001 123556777776532
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
...+.+|-|||+||.|++-|+.+-++|+|||.|--||.-++.++++.|++-+..++.|+|-+ +|--+-.....
T Consensus 143 ------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYA-THIFDGLe~Wp 215 (291)
T KOG2355|consen 143 ------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYA-THIFDGLETWP 215 (291)
T ss_pred ------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEE-eeeccchhhcc
Confidence 23456999999999999999999999999999999999999999999999998766666655 55666777888
Q ss_pred CeEEEecCCeEEEecCHHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLEF 415 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~~ 415 (991)
.+++.|+.|+++-.-+.+.+.++
T Consensus 216 thl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 216 THLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hhEEEecCCeeeeccccchhhhh
Confidence 99999999999986666655543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-19 Score=197.27 Aligned_cols=119 Identities=29% Similarity=0.328 Sum_probs=98.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+-.+.. ++.+|+|||+.|+||+++||||||||||||||++|+|... ..+|+|.++|++..
T Consensus 5 i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 556777755421 3678999999999999999999999999999999999987 36899999998865
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCC-CCHHHHhccccceee
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKVGTKSPRV 988 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~-v~~~~k~~~veev~~ 988 (991)
. ..+++.+|||+|++.+.|.+||+|+|.|.|.+|.++. ...+.-...++++++
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L 126 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL 126 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCC
Confidence 3 4788899999999999999999999999999999774 333344455555543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=181.58 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=65.1
Q ss_pred ccCCCChhHhHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc-eEEEEEecCCchhHhhcC-
Q 001957 320 MIRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDLFD- 393 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L----~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~-t~ii~i~q~~~~~~~lfD- 393 (991)
.+..||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|+++.+..+. ++|++ +|+..+..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viii-th~~~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLI-TPKLLPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEE-chhhccCCcccCc
Confidence 4568999999998877554 5899999999999999999999999999998653244 45554 455556667776
Q ss_pred -eEEEecCCe
Q 001957 394 -DIILLSDGQ 402 (991)
Q Consensus 394 -~vilL~~G~ 402 (991)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=191.76 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=137.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
+..+.+|+|+.|+.|+-++|.||||||||+||++|+|+-+.. +|.++--...-. +.+-|+||.+. ++..|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~~~-----~~lfflPQrPY-mt~GTL 517 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDGGP-----KDLFFLPQRPY-MTLGTL 517 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccCCC-----CceEEecCCCC-ccccch
Confidence 345889999999999999999999999999999999999876 898875433211 45789999764 566699
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc------cccccc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC------ADTMVG 317 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~------~dt~vg 317 (991)
||.+-|..+--... ....+ +..+..+|+..+|.|. .|+-+-
T Consensus 518 RdQvIYP~~~~~~~------------------~~~~~---------------d~~i~r~Le~v~L~hl~~r~ggld~~~~ 564 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMD------------------SKSAS---------------DEDILRILENVQLGHLLEREGGLDQQVD 564 (659)
T ss_pred hheeeccCcccccc------------------ccCCC---------------HHHHHHHHHHhhhhhHHHHhCCCCchhh
Confidence 99998864211000 00000 0112223333333332 222222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
-+....||+||+||++.||.+..+|++-||||.||++|......+.+.+++. +++.|++.| +......=|.++-
T Consensus 565 ~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-----giT~iSVgH-RkSL~kfHd~~L~ 638 (659)
T KOG0060|consen 565 WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-----GITFISVGH-RKSLWKFHDYVLR 638 (659)
T ss_pred ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-----CCeEEEecc-HHHHHhhhhEEEE
Confidence 2345679999999999999999999999999999999999999999988862 466777765 5577777888888
Q ss_pred ecC
Q 001957 398 LSD 400 (991)
Q Consensus 398 L~~ 400 (991)
|+.
T Consensus 639 ~~g 641 (659)
T KOG0060|consen 639 MDG 641 (659)
T ss_pred ecC
Confidence 874
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-18 Score=180.06 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=68.8
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
..+|+|+||++.|++++ .+|+++++|||++|||+.....+.. .++.+.+ .+.++|++.|+ .++.+++|++++|.+
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~ 165 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVEN 165 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEE
Confidence 46999999999999874 7899999999999999999999974 5676643 46666666553 578899999999999
Q ss_pred CeEEEec
Q 001957 401 GQIVYQG 407 (991)
Q Consensus 401 G~iv~~G 407 (991)
|++++.+
T Consensus 166 g~l~~~~ 172 (200)
T cd03280 166 ASMEFDP 172 (200)
T ss_pred EEEEEec
Confidence 9999874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-17 Score=177.96 Aligned_cols=257 Identities=23% Similarity=0.359 Sum_probs=169.5
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+++...++|+++....-..+.+.+ .|... .+.-.-.+.|++++-..........+| +.+..+++.+ ..
T Consensus 322 eEa~r~i~rf~~~d~~A~~h~L~~--pRyr~--ve~L~~p~~~~~v~k~faS~ld~~~lp---~e~~~IleSF----Gv- 389 (593)
T COG2401 322 EEAKRYIDRFVGEDPMAYPHLLLA--PRYRM--VEKLEGPIKFKNVTKTFASELDIKGLP---NEFQDILESF----GV- 389 (593)
T ss_pred HHHHHHHHHHhccCccccccceec--ccccc--ccccCCccccceeeeeeeeeeecccCC---hHHHHHHHHh----cc-
Confidence 566777788776555444433322 22221 111122356667655443332333333 3333333332 22
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCeeeEEEECCeeCCCccccceEEE
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVPQRTAAY 230 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~~nG~~~~~~~~~~~~~y 230 (991)
..+.....+|+|||+.++||++++|+|+|||||||||++|+|.. .|+ +|.|.+-- ....+.
T Consensus 390 ~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~---sg~v~vp~--------nt~~a~ 458 (593)
T COG2401 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD---SGKVEVPK--------NTVSAL 458 (593)
T ss_pred hheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC---CCceeccc--------cchhhc
Confidence 22345677999999999999999999999999999999999974 344 67665421 123456
Q ss_pred EecC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc
Q 001957 231 ISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309 (991)
Q Consensus 231 v~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 309 (991)
+|-. +.-|..-|+.|++.=- .+ |+ ....++|+..||.
T Consensus 459 iPge~Ep~f~~~tilehl~s~-----tG----------------------D~---------------~~AveILnraGls 496 (593)
T COG2401 459 IPGEYEPEFGEVTILEHLRSK-----TG----------------------DL---------------NAAVEILNRAGLS 496 (593)
T ss_pred cCcccccccCchhHHHHHhhc-----cC----------------------ch---------------hHHHHHHHhhccc
Confidence 6643 4445566777766311 00 11 0124578888886
Q ss_pred ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 310 ~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
+.. .=-+..+.||-|||.|+.||.++...|.+++.||--+.||..|+..+.+.|.++++..+.|.+++.|+| +-.-
T Consensus 497 DAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~ 572 (593)
T COG2401 497 DAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGN 572 (593)
T ss_pred hhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHh
Confidence 532 222456789999999999999999999999999999999999999999999999987777777766554 4555
Q ss_pred hh-cCeEEEecCCeEE
Q 001957 390 DL-FDDIILLSDGQIV 404 (991)
Q Consensus 390 ~l-fD~vilL~~G~iv 404 (991)
.+ =|.++++.=|.+.
T Consensus 573 AL~PD~li~vgYg~v~ 588 (593)
T COG2401 573 ALRPDTLILVGYGKVP 588 (593)
T ss_pred ccCCceeEEeeccccc
Confidence 56 5888888766543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=180.39 Aligned_cols=180 Identities=26% Similarity=0.353 Sum_probs=134.1
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC--CCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH--DNH 237 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~--d~~ 237 (991)
.....+.++++++|-|.--.-+||+||||.||||||++|.|.++|+ .|+..-|- +-.+|+..|+ ..+
T Consensus 595 gy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh--------rL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 595 GYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH--------RLRIGWFDQHANEAL 663 (807)
T ss_pred cCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc--------eeeeechhhhhHHhh
Confidence 4445677899999999999999999999999999999999999998 88765442 2357877776 344
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
-.+-|.-|.|.-...+ .++ .....|-.+||...++|+-
T Consensus 664 ~~Eetp~EyLqr~FNl-----pyq------------------------------------~ARK~LG~fGL~sHAHTik- 701 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNL-----PYQ------------------------------------EARKQLGTFGLASHAHTIK- 701 (807)
T ss_pred ccccCHHHHHHHhcCC-----ChH------------------------------------HHHHHhhhhhhhhccceEe-
Confidence 4556666665432211 010 1123477899999999863
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..||||||-||++|+..++.|+||||||||+.||..+...+-+.|++. .+.+|+.. |+...+.+---.++|
T Consensus 702 ---ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~Vs-HDeRLi~eT~C~LwV 773 (807)
T KOG0066|consen 702 ---IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVS-HDERLIVETDCNLWV 773 (807)
T ss_pred ---eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEe-cccceeeecCceEEE
Confidence 5789999999999999999999999999999999999999999999874 34444444 444444444445555
Q ss_pred ecC
Q 001957 398 LSD 400 (991)
Q Consensus 398 L~~ 400 (991)
+.+
T Consensus 774 vE~ 776 (807)
T KOG0066|consen 774 VEN 776 (807)
T ss_pred Ecc
Confidence 544
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=199.60 Aligned_cols=88 Identities=36% Similarity=0.447 Sum_probs=80.8
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc----ccccceeeEEeccCCCCCCCCH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVTI 958 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~----~tf~r~~GY~eQ~Dih~p~~TV 958 (991)
+++++|+.|+||+|.+|.|+|||||||++++|.|... +.+|++.|+|+.... ...++.+|||||.|++++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 8999999999999999999999999999999999987 678999999999652 2267889999999999999999
Q ss_pred HHHHHhhhhccCCC
Q 001957 959 YESLLFSAWLRLSP 972 (991)
Q Consensus 959 rEsL~fsA~LRlp~ 972 (991)
||+|+|.|+||.-+
T Consensus 658 rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 658 REHLEFYARLRGLP 671 (885)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999744
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=186.34 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=127.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC-CCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTV 243 (991)
+.+|++-++++..|+-.+|+|+||+||||||++|+. |.| .|.++.+. ..-.|++-. +.+... |.
T Consensus 93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v--~~f~veqE---~~g~~t~~~~~~l~~D-~~ 157 (582)
T KOG0062|consen 93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQV--SGFHVEQE---VRGDDTEALQSVLESD-TE 157 (582)
T ss_pred hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCc--CccCchhh---eeccchHHHhhhhhcc-HH
Confidence 459999999999999999999999999999999997 111 11121110 111233211 112222 22
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++.+... +++- ..+.....+.+.+|..+|.+.-.- ....+.
T Consensus 158 ~~dfl~~-------------------e~~l----------------~~~~~l~ei~~~~L~glGFt~emq----~~pt~s 198 (582)
T KOG0062|consen 158 RLDFLAE-------------------EKEL----------------LAGLTLEEIYDKILAGLGFTPEMQ----LQPTKS 198 (582)
T ss_pred HHHHHHh-------------------hhhh----------------hccchHHHHHHHHHHhCCCCHHHH----hccccc
Confidence 2222211 0000 000011223445788888865332 245678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
+|||-|-|+++||||..+|++|+|||||+.||..+-.-+-+.|+.+ . .+++++.|++...-..|.+||.+++=++
T Consensus 199 lSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~-~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 199 LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----K-ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----C-ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999863 2 4455567899999999999999987665
Q ss_pred -EEecCHHH
Q 001957 404 -VYQGPREL 411 (991)
Q Consensus 404 -v~~G~~~~ 411 (991)
.|.|.-++
T Consensus 274 ~~YkGN~~~ 282 (582)
T KOG0062|consen 274 DYYKGNYSQ 282 (582)
T ss_pred hhhcCcHHH
Confidence 45665544
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-18 Score=179.68 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHHH-HHHh
Q 001957 503 ELLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEI-SMTI 580 (991)
Q Consensus 503 ~~~~~~~~R~~l~~~R~~~~~-~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~-~~~~ 580 (991)
+|++++++|+++..+||+... +..++..++.+++++.+|.+.+...+ +..+.|.+++.+...++...... ....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQD----GFNRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccceeeehhhHHhhhhhcccchhhhh
Confidence 478999999999999999877 89999999999999999998762221 22345666666665554444443 4455
Q ss_pred hcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001957 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660 (991)
Q Consensus 581 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~ 660 (991)
.++..+.+++....|++++|.+++.+.+++..++..+++.++.|++.|++.+ +|+.+++.+.+...++.+++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 6888999999999999999999999999999999999999999999999988 77888888888888899999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhh
Q 001957 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (991)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef 716 (991)
+++...++.+.+++..++++++|.++|.+.+|+|++|+.|+||++|+.+++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-17 Score=183.14 Aligned_cols=182 Identities=23% Similarity=0.285 Sum_probs=142.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+++.+++..++.-.-.+++|+||+||||+++++.|.+.|. .|.+.+++ +..++|-.|+..-+..+.|-+
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~ 446 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNA 446 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc--------cceecchhHhhhhHHHHHhHH
Confidence 5888888888888899999999999999999999998887 78776653 567899999866555555543
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
- .+..++. +| + ........+..+||+.-. ....+.+||
T Consensus 447 v-d~~~~~~-pG-----------------------------------~-~~ee~r~hl~~~Gl~g~l----a~~si~~LS 484 (582)
T KOG0062|consen 447 V-DFMEKSF-PG-----------------------------------K-TEEEIRRHLGSFGLSGEL----ALQSIASLS 484 (582)
T ss_pred H-HHHHHhC-CC-----------------------------------C-CHHHHHHHHHhcCCCchh----hhccccccC
Confidence 2 3322222 11 0 111234468899997421 123467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
||||=||++|.+...+|.+|+|||||+.||-.+-..+.+.|+.+ .|+.++| +|+.+.+-.+|+.+.+..+|++.-
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~V--SHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLV--SHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEE--ECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999999999985 4554443 478889999999999999999964
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=170.16 Aligned_cols=117 Identities=27% Similarity=0.532 Sum_probs=95.6
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC-CeeeEEEEEcCcc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYP 933 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~-G~i~G~I~inG~~ 933 (991)
+++|+||+|.|+.+. +++.+|+|+|+.++||+++||+|+||||||||+++|+|.... +..+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 589999999997652 235789999999999999999999999999999999998653 3578999999998
Q ss_pred CCc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc---CCCCCCHHHHh
Q 001957 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR---LSPEVDSETRK 980 (991)
Q Consensus 934 ~~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR---lp~~v~~~~k~ 980 (991)
... ...++.+|||+|++.+.|.+||+|+|.|.+.++ .+.+.|..+|+
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~q 125 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERK 125 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHH
Confidence 542 246778999999999999999999999987653 23444544443
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=159.56 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=63.3
Q ss_pred CChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 324 ISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 324 LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
||||||||+++|++++ .+|+++++|||++|||+.....+.+.|+++++ .+.++|++.|. .+....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~--~~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLK--KEMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECC--HHHHhhCCeEEEEE
Confidence 9999999999999986 68999999999999999999999999999865 35566665544 35667899999997
Q ss_pred C
Q 001957 400 D 400 (991)
Q Consensus 400 ~ 400 (991)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=174.87 Aligned_cols=96 Identities=25% Similarity=0.247 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
..|++.+.|+|.+..|.-| ..|||||-|||+||.+++++++++|+|||||-||...+....+.++++++. + ..
T Consensus 193 ~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~-k~ 265 (591)
T COG1245 193 KFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-G-KY 265 (591)
T ss_pred cHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-C-Ce
Confidence 4678899999998887554 689999999999999999999999999999999999999999999999863 4 44
Q ss_pred EEEEecCCchhHhhcCeEEEecC
Q 001957 378 VISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|+.+.|+..-+--++|-|.++..
T Consensus 266 ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 266 VIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEechHHHHHHhhheeEEEec
Confidence 55567888777788999988863
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-17 Score=179.49 Aligned_cols=114 Identities=25% Similarity=0.343 Sum_probs=94.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+=.+ | ...+|+|||+.+++|+.++|+|||||||||||.+|||-.+ ..+|+|.|+|.+.
T Consensus 5 ~l~i~~v~k~y---------g----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF---------G----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec---------C----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 56788877443 2 3578999999999999999999999999999999999998 5689999999996
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
.. .-.+|-+|+|.|+-+++|++||+|++.|-=+ +....++++...-|+|
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e 119 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK--VRKKLKKAEIKARVEE 119 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHH
Confidence 63 4579999999999999999999999999755 4444555555555554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=167.33 Aligned_cols=99 Identities=26% Similarity=0.410 Sum_probs=87.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.+++|++++.. ..+|+|||+.+.+|+.+||+|||||||||||++|||-.+ ..+|+|.++|.|.
T Consensus 3 ~l~i~~v~~~f~~-------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFGG-------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeCc-------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 3567788877632 567999999999999999999999999999999999987 5689999999997
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+ .=.+..|||.|+|.++|-.||+|+..|...++.
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 3 335678999999999999999999999988885
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-16 Score=173.84 Aligned_cols=86 Identities=31% Similarity=0.420 Sum_probs=80.1
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.|+|||..++.|+.++|+|||||||||||++|||=.. ..+|+|+|+|...+. .--.|-+|+|.|+.+++|++||+|+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 7999999999999999999999999999999999987 578999999999774 4457999999999999999999999
Q ss_pred HHhhhhccC
Q 001957 962 LLFSAWLRL 970 (991)
Q Consensus 962 L~fsA~LRl 970 (991)
+.|.-++|.
T Consensus 96 iaf~Lk~~~ 104 (338)
T COG3839 96 IAFGLKLRG 104 (338)
T ss_pred hhhhhhhCC
Confidence 999999985
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-16 Score=166.98 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=110.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEE-EEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (991)
..+.+|+++.+++|++++|.||||+||||||+.++-.. ....+| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV---------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH---------------------HHHHhCCCcCcccEEEe----
Confidence 46899999999999999999999999999999988210 001111 3433221111
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
..+.++..+|+++.. .++
T Consensus 72 ------------------------------------------------------~~~~il~~~~l~d~~--------~~~ 89 (222)
T cd03285 72 ------------------------------------------------------IVDCILARVGASDSQ--------LKG 89 (222)
T ss_pred ------------------------------------------------------ccceeEeeeccccch--------hcC
Confidence 012234455554322 357
Q ss_pred CChhHhHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 324 LSGGqrqRvsia~~L--~~~p~vLllDEP---TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+|.|+++++.+++++ +.+|++++|||| |++||.......+ ++.+.+..+.++|+++| ..++.+++|++..+
T Consensus 90 lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i--l~~l~~~~~~~vlisTH--~~el~~~~~~~~~i 165 (222)
T cd03285 90 VSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI--AEYIATQIKCFCLFATH--FHELTALADEVPNV 165 (222)
T ss_pred cChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH--HHHHHhcCCCeEEEEec--hHHHHHHhhcCCCe
Confidence 999999999999999 899999999999 9999998775433 23333334667777655 37889999999999
Q ss_pred cCCeEEEecC
Q 001957 399 SDGQIVYQGP 408 (991)
Q Consensus 399 ~~G~iv~~G~ 408 (991)
.+|++.+.+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=171.54 Aligned_cols=176 Identities=21% Similarity=0.319 Sum_probs=120.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+...++|.|+||--++|+||||||||+|.++|+|+-+- |+|+-.. ++...+-|+||.+..- -.|.|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~--P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSI--PRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeec--CCCcceEeccCCCccC-cCccc
Confidence 3488999999999999999999999999999999999875 4444322 2234589999987544 66778
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC----cc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD----EM 320 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~----~~ 320 (991)
|.+-+.- +..+ +.+ .++ +| ...+.+|+++.|++.+..-.|= +.
T Consensus 563 DQIIYPd------S~e~----~~~----kg~-~d------------------~dL~~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 563 DQIIYPD------SSEQ----MKR----KGY-TD------------------QDLEAILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred ceeecCC------cHHH----HHh----cCC-CH------------------HHHHHHHHHhhHHHHHHhccChhhhccH
Confidence 7776632 1111 111 111 11 1123345555555443322221 12
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
-.-||||||||+.+||+.-+.|+.-+|||.||+........|.+..+. . +..+++++|. +..+.+
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~-gi~llsithr-pslwk~ 674 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----A-GISLLSITHR-PSLWKY 674 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----c-CceEEEeecC-ccHHHH
Confidence 346999999999999999999999999999999999888888887765 3 4556665543 344443
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=156.22 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=63.0
Q ss_pred CCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+||+||+||+++|++|+. +|+++++|||++|||+.....+.+.+.+.... +.++|+++| .. +..+.+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH-~~-~~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITH-LP-ELAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcC-CH-HHHHhhhhEEEE
Confidence 499999999999999986 78999999999999999999999999987654 556666544 33 456789999998
Q ss_pred cC
Q 001957 399 SD 400 (991)
Q Consensus 399 ~~ 400 (991)
..
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 53
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=164.91 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||+++|++++. +|+++++||||+|||+.+...+++.|+++.+ +.++|++.|+| .+...+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~--~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLP--QVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechH--HHHHhcCcEEEE
Confidence 599999999999986543 9999999999999999999999999998753 56666666654 367899999999
Q ss_pred cCCe
Q 001957 399 SDGQ 402 (991)
Q Consensus 399 ~~G~ 402 (991)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=171.14 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=94.0
Q ss_pred HHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||.-. .+| +...+|||||.|||-+|..|.... .+++|||||+||-..-..++++.|.++.. .|.|+|
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi 879 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI 879 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4666777532 234 455689999999999999998776 89999999999999999999999999986 455655
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 435 (991)
+ |.|.. ++...+|.|+=| ..|+||..|+|+++.+ +| ..-++.||..
T Consensus 880 V-IEHNL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~ 931 (935)
T COG0178 880 V-IEHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKK 931 (935)
T ss_pred E-Eeccc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHH
Confidence 5 55555 788999999998 3589999999999974 44 4455666554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=170.24 Aligned_cols=103 Identities=26% Similarity=0.302 Sum_probs=88.6
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
...+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+|+|+
T Consensus 5 ~~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~ 69 (306)
T PRK13537 5 VAPIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGE 69 (306)
T ss_pred CceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCE
Confidence 34578999987763 1468999999999999999999999999999999999865 46899999999
Q ss_pred cCCc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 933 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 933 ~~~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+... ...++.+|||+|+..+.+.+||+|+|.|.|.++.
T Consensus 70 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 70 PVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred ecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 8542 3467889999999999999999999999888763
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=159.44 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=98.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..|++|+++.. |++++|+|||||||||||++|+|... +...|.++.. ..+++|.+.+++.+|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec------CccCcccceEEEeccch
Confidence 35889887775 79999999999999999999998642 1123444321 13666778889999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++.++.... . .++ ..+.++++.+++
T Consensus 78 d~l~~~~s~~----~----~e~------------------------------~~~~~iL~~~~~---------------- 103 (199)
T cd03283 78 DDLRDGISYF----Y----AEL------------------------------RRLKEIVEKAKK---------------- 103 (199)
T ss_pred hccccccChH----H----HHH------------------------------HHHHHHHHhccC----------------
Confidence 9998754210 0 000 113344555442
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhh--cCeEEEe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDL--FDDIILL 398 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~l--fD~vilL 398 (991)
.+|+++++|||++|||+.....+.. .++.+.+ .+.++|+++| ....+..+ .++|-.+
T Consensus 104 ---------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH-~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 ---------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTH-DLELADLLDLDSAVRNY 163 (199)
T ss_pred ---------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcC-cHHHHHhhhcCCCeEEE
Confidence 6899999999999999999987754 5777654 4566666655 44455444 4455444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=172.34 Aligned_cols=100 Identities=25% Similarity=0.340 Sum_probs=86.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|||... ..+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377889987763 1357999999999999999999999999999999999976 5689999999886
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|....|
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 42 335788999999999999999999999987654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=187.58 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=88.3
Q ss_pred HHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
..|..+||.... .| +....|||||.||+-+|..|..+ +.+++|||||+||++.....+++.|+++.. .|.|+
T Consensus 1681 ~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tv 1755 (1809)
T PRK00635 1681 QALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSV 1755 (1809)
T ss_pred HHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeE
Confidence 467788886532 33 45568999999999999999865 789999999999999999999999999986 56676
Q ss_pred EEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 378 VISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
|+.- |+ .++...||.|+=| ..|+||+.|+++++.+
T Consensus 1756 ivie-H~-~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYID-HD-PALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEe-CC-HHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 6654 43 3677779999999 3589999999999964
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=156.99 Aligned_cols=112 Identities=55% Similarity=0.835 Sum_probs=91.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.++.+. .++.+|+|||+.++||+++||+|+||||||||+++|+|.......+|+|.++|++.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 367899998875321 12468999999999999999999999999999999999753234689999999986
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHH
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k 979 (991)
. ..+++.+||++|++.+.+..||+|++.|.+.++ +.|..+|
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~LSgGe~ 114 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---GLSVEQR 114 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh---cCCHHHh
Confidence 5 567788999999998899999999999976654 4444444
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=170.78 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=87.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999998763 1357999999999999999999999999999999999987 5689999999986
Q ss_pred Ccc-cccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~-tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .-+|.+|||+|+..++|++||+|++.|....|.
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 432 235889999999999999999999999877653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=157.63 Aligned_cols=89 Identities=25% Similarity=0.364 Sum_probs=77.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC------cccc-cceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETF-ARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~------~~tf-~r~~GY~eQ~Dih~ 953 (991)
..+|++||+.+++|+++||||||||||||||++|+|--.. .+|.|.|+|.... ...| ++.+||+.|+-.+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 6889999999999999999999999999999999988763 6899999996643 2345 45599999999999
Q ss_pred CCCCHHHHHHhhhhccCC
Q 001957 954 PFVTIYESLLFSAWLRLS 971 (991)
Q Consensus 954 p~~TVrEsL~fsA~LRlp 971 (991)
|.+||+|++..-+.++.-
T Consensus 96 ~~ltv~ENv~lpl~~~~~ 113 (226)
T COG1136 96 PDLTVLENVELPLLIAGK 113 (226)
T ss_pred CCCCHHHHHHhHHHHcCC
Confidence 999999999987766643
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-15 Score=159.82 Aligned_cols=108 Identities=36% Similarity=0.564 Sum_probs=89.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc-CCeeeEEEEEcCccC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 934 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt-~G~i~G~I~inG~~~ 934 (991)
+.|+||.|.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ++..+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45888888774211 13578999999999999999999999999999999999864 234689999999987
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCC
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~ 972 (991)
....+++.+|||+|++...+.+||+|++.|.+..+.+.
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 112 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPR 112 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccc
Confidence 65567788999999998899999999999987766544
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-15 Score=160.63 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=82.1
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678887763 1357999999999999999999999999999999999865 358999999988542
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
..+++.+|||+|+....|.+||+|+|.|.+..
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 24577899999999889999999999987543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=161.75 Aligned_cols=88 Identities=31% Similarity=0.445 Sum_probs=79.4
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc---CCc-ccccceeeEEeccCCCCCC
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQ-ETFARISGYCEQNDIHSPF 955 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~---~~~-~tf~r~~GY~eQ~Dih~p~ 955 (991)
....|+|||..++.|+++||.|||||||||||.+|||-.+ ...|.|.+||.. ..+ ..-.|.+|||-|+-+++|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4567999999999999999999999999999999999998 568999999994 322 4568999999999999999
Q ss_pred CCHHHHHHhhhhcc
Q 001957 956 VTIYESLLFSAWLR 969 (991)
Q Consensus 956 ~TVrEsL~fsA~LR 969 (991)
+||.+++.|...+|
T Consensus 92 mtVa~NIAFGl~~~ 105 (345)
T COG1118 92 MTVADNIAFGLKVR 105 (345)
T ss_pred chHHhhhhhccccc
Confidence 99999999998877
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-15 Score=153.37 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=83.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC-
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 934 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~- 934 (991)
+.++||+.++ +.+++|+|||..+++|+.++|+||||+||||||.+|.+-.+ +.+|+|.|+|...
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 4567777555 25788999999999999999999999999999999999887 5689999999654
Q ss_pred ---CcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 ---KQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ---~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
+....+|.+|+|.|+-.++|++||-|+++.+=
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 23468999999999999999999999999863
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=178.10 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=87.2
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||... .| +.+.+|||||+|||.||++|+.+| ++++|||||+|||+.....+++.|+++.+ .|.|+|
T Consensus 470 ~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 3677888653 34 455789999999999999999986 89999999999999999999999999865 466666
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++.| ....+ ..||+|++| ++|+|++.|+++++.
T Consensus 544 vVeH-d~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 544 VVEH-DEETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEC-CHHHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6554 45455 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-15 Score=156.50 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=83.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ++.+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4678887663 1357999999999999999999999999999999999854 468999999998653
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
..++.+|||+|+....+..||+|+|.+.+.++.
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 456789999999988899999999999876653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-15 Score=176.24 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=97.1
Q ss_pred CCccCC-CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeee
Q 001957 846 GMVLPF-EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 924 (991)
Q Consensus 846 ~~~lp~-~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~ 924 (991)
|...|. ....+.|+||+|.||++|+ ..+|+|+|+.++||+.||||||||.||||+.++|- .-+-+.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp~----------~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~--rfY~Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRPD----------VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL--RFYDPTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCCC----------chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH--HhcCCCC
Confidence 555563 4568999999999999874 46699999999999999999999999999999994 3345679
Q ss_pred EEEEEcCccCC---cccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHH
Q 001957 925 GNITISGYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 978 (991)
Q Consensus 925 G~I~inG~~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~ 978 (991)
|.|++||+|++ ....+|.+|+|.|+.+++ .=||+|++.|-.- ++++|+
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~-----~~t~e~ 573 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD-----NATDEE 573 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC-----CCCHHH
Confidence 99999999965 456899999999999999 6799999999533 666555
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-15 Score=167.83 Aligned_cols=100 Identities=28% Similarity=0.392 Sum_probs=85.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+..++ . .+.+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+|+|++||.+..
T Consensus 4 l~i~~l~~~~~--~----------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD--G----------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC--C----------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67889887762 1 2357999999999999999999999999999999999876 46899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..-+|.+|||+|+..++|++||+|++.|..+.+
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 2 223588999999999999999999999986654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-15 Score=156.39 Aligned_cols=112 Identities=24% Similarity=0.273 Sum_probs=90.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.|+||+..|. .+.+++|||+.+.+|++++|+|||||||||+|.++-+-.. ..+|+|+|||.+..
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 46788875542 3578999999999999999999999999999999965444 56899999999965
Q ss_pred c---ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 936 ~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
. ...+|.+|||=|+-.++|++||.|++.+=-.|. ..++++..+-++|
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~E 116 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADE 116 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHH
Confidence 3 357999999999999999999999998765554 3455555555554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-15 Score=157.44 Aligned_cols=98 Identities=27% Similarity=0.295 Sum_probs=82.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 5678887763 1358999999999999999999999999999999999854 358999999987532
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+..+.|.+||+|++.|.+.++
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 234567899999998899999999999987665
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=166.97 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=86.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|++..+. ...+|+|||+.+++|++++|+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999997662 1357999999999999999999999999999999999986 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|..+.+
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 42 346789999999999999999999999976654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-15 Score=154.18 Aligned_cols=101 Identities=30% Similarity=0.381 Sum_probs=86.9
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+||+-.| .+.++|+|||+.+++|++++|+|+|||||||||+.|+|-.. ..+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 4567777444 24789999999999999999999999999999999999876 34899999999955
Q ss_pred ----cccccceeeEEeccCCCCCCCCHHHHHHhhhhccCC
Q 001957 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (991)
Q Consensus 936 ----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp 971 (991)
.+..++-++||||-.-.+|.+||+|+|...+..|-.
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~ 108 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD 108 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc
Confidence 245788899999999999999999999998776643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=177.62 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=88.4
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|+.+||.+. .|. .+..|||||||||.||++|..+| ++++|||||+|||+..+..+++.|+++.+ .|.|+|
T Consensus 472 ~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999754 554 45689999999999999999987 99999999999999999999999999864 566666
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++ .|...++ ..+|+|++| .+|++++.|+++++.
T Consensus 546 vV-eH~~~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 546 VV-EHDEDTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EE-eCCHHHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 65 4555565 469999999 999999999998874
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-15 Score=167.35 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=86.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.++++|+++.+. ...+|+|||+.+++|+++||+|+|||||||||++|||-.. ..+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998763 1357999999999999999999999999999999999876 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..-+|.+|||.|+..++|++||+|++.|..+.+
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 42 234688999999999999999999999986654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-15 Score=159.58 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=85.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
++.+|+++.|+ ++.+|+|||+.+++|++++|+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 3 L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchh
Confidence 67889999884 3578999999999999999999999999999999999665 46899999999854
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...++|.+||+||.-...+.+||+|...+.
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~G 100 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG 100 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhc
Confidence 456999999999999999999999999987
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-15 Score=148.02 Aligned_cols=97 Identities=29% Similarity=0.416 Sum_probs=84.4
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+|+|||..+.+|++++++||||||||||||++||-.+ +..|.|.+||+++.-..-.| |.|-|+|.++|-+||.+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgaer--gvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER--GVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCccc--eeEeccCccchhhHHHH
Confidence 457999999999999999999999999999999999998 67999999999976433322 88999999999999999
Q ss_pred HHHhhhhccCCCCCCHHHHhcccc
Q 001957 961 SLLFSAWLRLSPEVDSETRKVGTK 984 (991)
Q Consensus 961 sL~fsA~LRlp~~v~~~~k~~~ve 984 (991)
+..|.-+||. +++++|..-+.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~ 114 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAH 114 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHH
Confidence 9999999984 56677765443
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=153.32 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=63.8
Q ss_pred ccCCCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 320 MIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
...-+|+||||++++|++|+ .+|++++|||||++||+.....+.+.|+++ . .+++++|| .+.+..
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~-~~~~~~ 253 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTD-LADFDA 253 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCC-chhccc
Confidence 34568999999999999875 799999999999999999999999999764 2 35555554 446667
Q ss_pred hc---CeEEEecCCeE
Q 001957 391 LF---DDIILLSDGQI 403 (991)
Q Consensus 391 lf---D~vilL~~G~i 403 (991)
++ ++++.|++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 76 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-15 Score=153.90 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=63.8
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.++++++| +..+.+++.+|++++|||||+|||+.....+... ++.+.+ .+.++|+++ |. .+..+.+|++..+..|
T Consensus 91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~t-H~-~~~~~~~~~~~~l~~~ 166 (202)
T cd03243 91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFAT-HF-HELADLPEQVPGVKNL 166 (202)
T ss_pred eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEC-Ch-HHHHHHhhcCCCeEEE
Confidence 45655554 6666777889999999999999999988877654 555443 456666654 44 4778899999999999
Q ss_pred eEEEecCHHH
Q 001957 402 QIVYQGPREL 411 (991)
Q Consensus 402 ~iv~~G~~~~ 411 (991)
++...+...+
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 9998886533
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-15 Score=155.67 Aligned_cols=104 Identities=24% Similarity=0.331 Sum_probs=84.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. +.+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35778887763110 11468999999999999999999999999999999999864 46899999998854
Q ss_pred ccc-------ccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~~t-------f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .++.+|||+|+....+.+||+|+|.|.+.++.
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 211 34679999999988999999999999876653
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=154.10 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=82.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.+.||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5678887663 1357999999999999999999999999999999999865 468999999987542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+++.+|||+|++...|..||+|.|.+.+..+
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 245677999999988899999999999876544
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-15 Score=164.11 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=86.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|++..+. .+.+|+|||+.+.||+++||+|||||||||||++|+|... ..+|+|.|+|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887763 2458999999999999999999999999999999999865 56899999998864
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ...++.+|||+|+....|.+||+|+|.|.+.++.
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 2 2356789999999999999999999999988764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-15 Score=155.97 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=84.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++- .++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|++..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 356788877631 11458999999999999999999999999999999999865 46899999999854
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ..+++.+|||+|+....+..||+|++.|.+..+.
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 2 3456789999999888889999999998776553
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=157.44 Aligned_cols=209 Identities=23% Similarity=0.232 Sum_probs=135.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.++.|-|+.|-.|+-.+|+||||-||||||+.|+.+- +|. -.+-||.|+- .-..-
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--------------------IDvLlCEQEv-vad~t 335 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--------------------IDVLLCEQEV-VADST 335 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--------------------CceEeeeeee-eecCc
Confidence 45889999999999999999999999999999999873 332 1233444432 12222
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChH-----HHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID-----VYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
|.-+++.-+-. .|..++.+..+...+-. .-+.... .+.+-.+.....++.....+|.-||.+.-..
T Consensus 336 ~Ai~tvl~aD~-----kRl~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ--- 406 (807)
T KOG0066|consen 336 SAIDTVLKADK-----KRLALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ--- 406 (807)
T ss_pred HHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh---
Confidence 33333332211 11222222111111100 0000011 1111112222334455667888999875432
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++.....|||-|-||++||||...|.+|.|||||+.||......+-+.|+.+. +|.+| ++|+...+-..|.+||
T Consensus 407 -~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLI-VSHDQgFLD~VCtdII 480 (807)
T KOG0066|consen 407 -ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLI-VSHDQGFLDSVCTDII 480 (807)
T ss_pred -cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEE-EecccchHHHHHHHHh
Confidence 35566899999999999999999999999999999999999888888888752 35444 4577888999999999
Q ss_pred EecCCeEEE-ecCH
Q 001957 397 LLSDGQIVY-QGPR 409 (991)
Q Consensus 397 lL~~G~iv~-~G~~ 409 (991)
.|++-++.| .|..
T Consensus 481 HLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 481 HLDNQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhhhhcchH
Confidence 999877754 4543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=166.04 Aligned_cols=100 Identities=25% Similarity=0.306 Sum_probs=85.3
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeee--EEEEEcCc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 932 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~--G~I~inG~ 932 (991)
.+.++||++.+. +..+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 477889998773 1357999999999999999999999999999999999865 345 99999998
Q ss_pred cCCc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+... ...+|.+|||.|+..++|++||+|+|.|....+
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 8542 234688999999999999999999999986654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=164.50 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=87.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..++ ++.+|+|||+.+.||+++||+|||||||||||++|+|... ..+|+|.|+|++.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 478999998763 2468999999999999999999999999999999999876 4589999999985
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....+.+||+|+|.|.+.++
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 42 245778999999999999999999999988765
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-15 Score=156.52 Aligned_cols=99 Identities=30% Similarity=0.376 Sum_probs=82.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35678887652 1357999999999999999999999999999999999875 45899999998754
Q ss_pred cc---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. . .++.+||++|+...+|.+||+|++.|.+..+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR 103 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc
Confidence 21 1 2466999999998999999999999876654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=165.39 Aligned_cols=98 Identities=26% Similarity=0.417 Sum_probs=84.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66788887762 1357999999999999999999999999999999999875 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
. ..-+|.+|||+|+..++|++||+|++.|...+
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 2 23457899999999999999999999998665
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-14 Score=157.83 Aligned_cols=99 Identities=25% Similarity=0.284 Sum_probs=82.9
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
.++||++.++- ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.+||.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 46788877631 0357999999999999999999999999999999999865 45899999998753
Q ss_pred --cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 --QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 --~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+..+++.+|||+|...+.+..||+|++.|.+.++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 2345678899999999999999999999876654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=155.93 Aligned_cols=98 Identities=28% Similarity=0.320 Sum_probs=81.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4678887663 1357999999999999999999999999999999999864 458999999998643
Q ss_pred c---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. . .++.+|||+|+...+|.+||+|+|.|.+..+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~ 103 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR 103 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc
Confidence 1 2 2356899999999999999999999876554
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=153.93 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=83.2
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGGG---------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCCC---------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-
Confidence 4678887763210 11468999999999999999999999999999999999865 35899999998864
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..++.+|||+|+..+.+..||+|++.|.+..+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 101 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ 101 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHc
Confidence 35678999999988889999999999876654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=155.47 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=81.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++||++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5678887763 1357999999999999999999999999999999999865 458999999987532
Q ss_pred c---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. . .++.+|||+|+....|.+||+|++.+....+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc
Confidence 1 2 2356899999998999999999999875544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=154.44 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=83.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++- +++.+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567899887731 12358999999999999999999999999999999999764 45899999998753
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+||++|+....+..||+|++.|.+..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 108 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII 108 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc
Confidence 2 125678999999988899999999999876654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=161.67 Aligned_cols=100 Identities=28% Similarity=0.289 Sum_probs=84.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.+. ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988763 1357999999999999999999999999999999999865 3589999999875
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....|.+||+|+|.+.+.++
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 32 235678999999988899999999999877654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-14 Score=162.60 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++.+. ....+|+|||+.+.||+++||+|+||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 2 I~~~~lsk~y~~~~---------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT---------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC---------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 57889998774221 12468999999999999999999999999999999999976 46899999999864
Q ss_pred cc------cccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..+|.+|||+|+..++|..||+|++.|...++
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~ 110 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 110 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc
Confidence 21 24678999999999999999999999976554
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-14 Score=155.48 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=84.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++-. .+...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|++..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4678888776311 011368999999999999999999999999999999999975 46899999999864
Q ss_pred cc------cccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. .+++.+|||+|+....|.+||+|++.|.+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 110 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA 110 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc
Confidence 21 23677899999999999999999999876555
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=152.14 Aligned_cols=98 Identities=27% Similarity=0.384 Sum_probs=81.7
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ .+.+|+|||+.++||++++|+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5778887763 1357999999999999999999999999999999999864 458999999988542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+....+..||+|++.+.+.++
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR 100 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc
Confidence 123467999999988889999999999876544
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-14 Score=164.67 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=84.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.+++|+++||+|+|||||||||++|||-.. ..+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67889987763 1357999999999999999999999999999999999865 45899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 2 224577999999999999999999999987655
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-14 Score=149.67 Aligned_cols=116 Identities=42% Similarity=0.699 Sum_probs=91.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++.... .....+|+|+|+.++||+++||+|+||||||||+++|||-.+.-..+|+|.++|.+.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence 4678999988753110 012458999999999999999999999999999999999862125689999999987
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHh
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~ 980 (991)
.....++.+|||+|+....+..||+|++.+.+.++ +.|.-+|+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---~LS~G~~q 118 (194)
T cd03213 76 DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---GLSGGERK 118 (194)
T ss_pred chHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---cCCHHHHH
Confidence 64456788999999988889999999999877653 45554443
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-14 Score=156.63 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=85.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC---eeeEEEEEcC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G---~i~G~I~inG 931 (991)
.+.++||++.++- ..+|+|||+.++||+++||+|+||||||||+++|+|-.... ..+|+|+++|
T Consensus 4 ~l~~~~l~~~~~~-------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYGS-------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeCC-------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 3678999987731 34799999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+.. +..+++.+|||+|+....+..||+|++.+.+..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 113 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLN 113 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhc
Confidence 8753 2245678999999998899999999999876544
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=154.17 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=84.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++-.. ....+|+|||+.++||++++|+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11468999999999999999999999999999999999865 4689999999886
Q ss_pred Cccc------c-cceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~t------f-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.... + ++.+||++|+....|.+||+|+|.|.+.++
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 4211 2 257899999988888999999999976554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-14 Score=153.78 Aligned_cols=103 Identities=28% Similarity=0.334 Sum_probs=84.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++-.. +...+|+|+|+.+.||+.+||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 46788888764210 11258999999999999999999999999999999999864 45899999999864
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|+..+.+..||+|++.+...++
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 106 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence 2 245678999999998899999999999876654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=162.65 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=77.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc--ccccceeeEEeccCCCCCCCCH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTI 958 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~--~tf~r~~GY~eQ~Dih~p~~TV 958 (991)
..+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|.+... ...++.+|||+|++.+.|.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 468999999999999999999999999999999999865 458999999988542 2356779999999999999999
Q ss_pred HHHHHhhhhccC
Q 001957 959 YESLLFSAWLRL 970 (991)
Q Consensus 959 rEsL~fsA~LRl 970 (991)
+|+|.|.+.++.
T Consensus 84 ~e~l~~~~~~~~ 95 (302)
T TIGR01188 84 RENLEMMGRLYG 95 (302)
T ss_pred HHHHHHHHHHcC
Confidence 999999888764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=151.46 Aligned_cols=99 Identities=27% Similarity=0.356 Sum_probs=83.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|++..++ +..+|+|||+.++||+++||+|+||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788887652 2357999999999999999999999999999999999865 45799999998753
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...+++.+|||+|++...+..||+|++.+.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 2236778999999998889999999999876554
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=155.70 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=81.0
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCcc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGYP 933 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~~ 933 (991)
.++||++.++ .+.+|+|||+.+.||+++||+|+|||||||||++|+|-... -..+|+|+++|.+
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 5678887652 13579999999999999999999999999999999998610 1468999999988
Q ss_pred CCc-----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 934 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 934 ~~~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... ..+++.+|||+|+.... ..||+|++.|.+.++
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~ 108 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLH 108 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhc
Confidence 532 24567899999998766 799999999877655
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=155.99 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=84.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGY 932 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~ 932 (991)
+.++||++.++ ...+|+|||+.++||+++||+|+||||||||+++|+|.... ...+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67889987763 13579999999999999999999999999999999998642 246899999998
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+.. ....++.+||++|+..+.+..||+|++.|....+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 753 2346678999999998899999999999875443
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-14 Score=151.05 Aligned_cols=99 Identities=26% Similarity=0.368 Sum_probs=83.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+|+++.++ ...+|+|||+.++||+.+||+|+||||||||+++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45678887653 1357999999999999999999999999999999999865 45899999998853
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|.+...|..||+|++.+.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 2 346778999999998899999999999987554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-14 Score=162.72 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=86.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++... .++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 i~i~~l~~~y~~~~---------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGG---------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCC---------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56889998874211 13568999999999999999999999999999999999875 45899999999864
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|+...++..||+|++.|.+.++
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~ 110 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA 110 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc
Confidence 2 124678999999998999999999999987654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=153.13 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=83.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. ....+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46788888763110 01258999999999999999999999999999999999864 46899999998864
Q ss_pred c------ccccceeeEEeccC--CCCCCCCHHHHHHhhhhccC
Q 001957 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~D--ih~p~~TVrEsL~fsA~LRl 970 (991)
. ..+++.+||++|+. ...+..||+|++.+.+.++.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~ 113 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG 113 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhcc
Confidence 2 34677899999997 35678999999998765543
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=153.38 Aligned_cols=100 Identities=31% Similarity=0.360 Sum_probs=83.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ . +..+|+|+|+.++||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~--~----------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP--G----------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC--C----------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46788887763 1 1357999999999999999999999999999999999864 45899999998854
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+||++|+....+..||+|++.+.+.++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR 107 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc
Confidence 2 135678999999988889999999999976654
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=151.74 Aligned_cols=98 Identities=30% Similarity=0.382 Sum_probs=81.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..+
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4678887763 1357999999999999999999999999999999999865 468999999987542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+....+..||+|++.+.+..+
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR 100 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence 224567899999988889999999999875543
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-14 Score=151.94 Aligned_cols=86 Identities=31% Similarity=0.367 Sum_probs=73.2
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC-CCCCCCHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTIY 959 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di-h~p~~TVr 959 (991)
+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+......++.+|||+|+.. .....||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 357999999999999999999999999999999999865 468999999998654456778999999864 34567999
Q ss_pred HHHHhhhhc
Q 001957 960 ESLLFSAWL 968 (991)
Q Consensus 960 EsL~fsA~L 968 (991)
|+|.|.+..
T Consensus 91 e~l~~~~~~ 99 (205)
T cd03226 91 EELLLGLKE 99 (205)
T ss_pred HHHhhhhhh
Confidence 999986544
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=151.81 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=82.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++- ++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 46788877631 1357999999999999999999999999999999999854 458999999987532
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+++.+||++|+....+..||+|++.+.+..+
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~ 106 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT 106 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc
Confidence 135678999999998999999999999876554
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-14 Score=152.44 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=83.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEGK---------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCCC---------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 46788888764211 12468999999999999999999999999999999999865 46899999998853
Q ss_pred c---cc---cc-ceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q---ET---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~---~t---f~-r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .. ++ +.+||++|+....+..||+|++.+.+.++
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 2 11 23 57899999988888999999999977655
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=162.81 Aligned_cols=98 Identities=28% Similarity=0.425 Sum_probs=84.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.|+||+|.|+. .+.+|+|||..++||+.+||+|+||||||||+++|+|--. ..+|+|+|||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46899999999851 1246999999999999999999999999999999999865 568999999998
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+ .+..++.+|||+|++.+++ -||||+|.+..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~ 572 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGA 572 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccC
Confidence 54 4678899999999998875 49999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-14 Score=151.59 Aligned_cols=97 Identities=35% Similarity=0.483 Sum_probs=81.9
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++|| ++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5678887662 135799999999999 999999999999999999999865 468999999987542
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+..+++.+||+|.+.|..+++
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence 235678999999998899999999999977665
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-14 Score=154.60 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=83.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 1358999999999999999999999999999999999865 45899999998854
Q ss_pred c----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|++...+..||+|++.+.+.++
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 106 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence 2 224577999999998888999999999876544
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-14 Score=149.67 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=82.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.++||+.+||+|+||||||||+++|+|... ..+|+|+++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 46788887762 1358999999999999999999999999999999999975 46899999999854
Q ss_pred --cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 --QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 --~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....|..||+|.+.|.+
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI 99 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHH
Confidence 2457788999999877788999999999864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-14 Score=154.87 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=85.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC---eeeEEEEEcC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G---~i~G~I~inG 931 (991)
.+.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|||..... ..+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367889998773 135799999999999999999999999999999999986421 2589999999
Q ss_pred ccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+.. ....++.+|||+|+....+..||+|++.+....+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 113 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN 113 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhc
Confidence 8753 1245678999999988899999999999876554
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-14 Score=173.36 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=84.7
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..++|+||+|.|+.. ..+|+|+|+.++||+.+||+|+||||||||+++|+|--. ..+|+|++||.
T Consensus 332 ~~~I~~~~vsf~Y~~~------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPGS------------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCCC------------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 3469999999998521 237999999999999999999999999999999998865 56899999998
Q ss_pred cCC--cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~--~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. .+.+++.+|||+|+..++ .-||||+|.|.
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF-~~TI~eNI~~g 431 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLF-DTTVRDNLRLG 431 (529)
T ss_pred EhhhHHHHHHhheEEEccCcccc-cccHHHHHhcc
Confidence 854 467788999999999887 45999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-14 Score=151.16 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=81.0
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4678887763 1357999999999999999999999999999999999865 45899999998753
Q ss_pred ----cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....+..||+|++.+.+
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 1346788999999988899999999999865
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-14 Score=154.56 Aligned_cols=97 Identities=27% Similarity=0.399 Sum_probs=81.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 46788887662 1357999999999999999999999999999999999864 45899999998864
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+.+|||+|+....|..||+|++.+.+.++
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~ 98 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA 98 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc
Confidence 2 3345799999988889999999999876544
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-14 Score=151.27 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ . ++.+|+|||+.++||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~--~----------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL--G----------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec--C----------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46788887763 1 1357999999999999999999999999999999999865 45899999998753
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+ ..+++.+|||+|+....+..||+|+|.+.++++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA 107 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc
Confidence 2 125678999999887788999999999977654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-14 Score=162.58 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=77.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccc----cceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF----ARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf----~r~~GY~eQ~Dih~ 953 (991)
+.+|+|||+.+++|++++|||+|||||||||++|+|-.. ..+|+|+|+|.+... ..+ +|.+|||+|+..++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 568999999999999999999999999999999999876 468999999998653 223 67899999999999
Q ss_pred CCCCHHHHHHhhhhcc
Q 001957 954 PFVTIYESLLFSAWLR 969 (991)
Q Consensus 954 p~~TVrEsL~fsA~LR 969 (991)
|++||+|++.|...++
T Consensus 84 ~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 84 PHMTILQNTSLGPELL 99 (363)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 9999999999987654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-14 Score=152.53 Aligned_cols=100 Identities=28% Similarity=0.401 Sum_probs=83.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++ ...+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988773 1357999999999999999999999999999999999865 4689999999885
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....+..||+|++.|.+..+
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 102 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK 102 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence 42 122467899999988889999999999876544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-14 Score=149.57 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=85.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.++ ++.+|+|||+.+.+|+.+||+|+||||||||+++|+|... ..+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899997753 1357999999999999999999999999999999999865 4579999999986
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.....++.+|||+|.+.+.+.+|++|++.+.+.++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 110 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH 110 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc
Confidence 54345667899999988899999999999876554
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-14 Score=150.58 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=81.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776653 1357999999999999999999999999999999999865 468999999998653
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... +.+|||+|++...+..||+|++.+.+.++
T Consensus 67 ~~~-~~~~~~~q~~~~~~~~t~~~~~~~~~~~~ 98 (223)
T TIGR03740 67 KDL-HKIGSLIESPPLYENLTARENLKVHTTLL 98 (223)
T ss_pred ccc-ccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence 333 57899999998889999999999877654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-14 Score=156.73 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=84.6
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~in 930 (991)
..+.++||++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|.... ...+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998773 13579999999999999999999999999999999998531 1368999999
Q ss_pred CccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 931 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 931 G~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
|.+.. ....++.+|||+|+..+.+. ||+|+|.|.+.++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~ 122 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING 122 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC
Confidence 98753 23456779999999887775 99999999876653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-14 Score=155.13 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=82.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGY 932 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~ 932 (991)
+.++||++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|-... +..+|+|+++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 12479999999999999999999999999999999998642 123899999999
Q ss_pred cCCc-----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+... ...++.+|||+|+....+ .||+|++.|.+.++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~ 109 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH 109 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc
Confidence 8642 245678999999988888 99999999977655
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-14 Score=157.81 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=82.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. .....+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889998874211 011358999999999999999999999999999999999875 46899999999864
Q ss_pred c-----ccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 Q-----ETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~-----~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
. ..+++.+|||+|+. ......||+|.|.|....
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 3 24578899999985 344467999999987554
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-14 Score=152.57 Aligned_cols=96 Identities=20% Similarity=0.369 Sum_probs=81.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.+.||+++||+|+||||||||+++|+|--. ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788887763 1357999999999999999999999999999999999854 46899999998854
Q ss_pred c-----ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
. ...++.+|||+|+....|..||+|.+.|..
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 102 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP 102 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHH
Confidence 2 234677999999988889999999998864
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-14 Score=153.65 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=80.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++||++.++- +..+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 56788876631 1357999999999999999999999999999999999864 458999999987542
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...++.+||++|+...++..||+|+|.+..
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 235678999999998899999999998754
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-14 Score=158.34 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=82.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-... ....+|+|||+.++||+.+||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP--------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc--------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999998842210 11358999999999999999999999999999999999875 45899999999863
Q ss_pred -------cccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 -------QETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 -------~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
...+++.+|||+|+. .+....||+|++.|....
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 124678899999984 334357999999987554
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-14 Score=149.17 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=75.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC---c----ccccceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~---~----~tf~r~~GY~eQ~Dih~ 953 (991)
..+|+|||+.++||+.++|+|+|||||||||++|+|... ..+|+|.++|.+.. . ...+|.+|||+|+....
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 357999999999999999999999999999999999875 46899999999832 1 13567899999998888
Q ss_pred CCCCHHHHHHhhhhcc
Q 001957 954 PFVTIYESLLFSAWLR 969 (991)
Q Consensus 954 p~~TVrEsL~fsA~LR 969 (991)
+..||+|++.|.+..+
T Consensus 89 ~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 89 ENETVEENLDLGLKYK 104 (206)
T ss_pred cCCcHHHHHHHHHHhc
Confidence 9999999999976654
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-14 Score=144.60 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=79.2
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++. ..+|+|+|+.+.||+++||+|+|||||||||++|+|... ..+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYGK-------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEECC-------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 56788876631 247999999999999999999999999999999999865 358999999987542
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
..+++.+|||+|+....+..||+|++.+|
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 24567899999998889999999998644
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-14 Score=148.41 Aligned_cols=95 Identities=27% Similarity=0.388 Sum_probs=80.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
..+|+++.++ ...+|+|||+.++||+.+||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677776652 1357999999999999999999999999999999999876 45899999998853
Q ss_pred -cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 -QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 -~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....+..||+|++.+..
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence 2346788999999988889999999999864
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-14 Score=147.50 Aligned_cols=99 Identities=24% Similarity=0.262 Sum_probs=82.1
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.+.||+.+||+|+||||||||+++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4677776652 2357999999999999999999999999999999999865 458999999987431
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
..+++.+|||+|.+..++..||+|.+.+...++.
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 3466789999999888889999999998765543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-14 Score=151.45 Aligned_cols=99 Identities=25% Similarity=0.332 Sum_probs=82.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ ++.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46778887763 1357999999999999999999999999999999999865 35899999998753
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ....+.+|||+|+....+..||+|++.+.+.++
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 2 123357899999988889999999999877655
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 991 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 991 | |||
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-19 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-17 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-04 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-16 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 8e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 8e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 9e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-04 |
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 63/260 (24%), Positives = 95/260 (36%), Gaps = 55/260 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TILK +S I G +L G +GKTTLL L T SGTV G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
A + LK++G+ A I +S G+K+RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
+ AL L +DE + GLD +++ L A+I + E F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231
Query: 394 DIILLSDGQIVYQGPRELVL 413
I+LL DGQ + QG E +L
Sbjct: 232 KILLLKDGQSIQQGAVEDIL 251
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV--------TT 334
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSA--LSQQGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 941 RISGYCEQN 949
Y Q
Sbjct: 73 LHRAYLSQQ 81
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG GK+TL G L P+ SG + ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK G++ D +S GQKKRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + R P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 9e-18
Identities = 107/738 (14%), Positives = 212/738 (28%), Gaps = 214/738 (28%)
Query: 121 YEHLNVEAEAFLASNA------LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGV 174
+ H++ E +F+ + +D+ + + I SK+ I+ V
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 175 IKPGRL-TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVPQRTAAY 230
RL LL S + + + L L M T Y
Sbjct: 62 SGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V +R + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLDVCADTMVGDEMIRGI---SGGQKKRVTTGEMMVGPALAL 345
G K + LDVC V +M I + E ++ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKL 205
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
+D + T + + + I+S A + L +P + ++ + +
Sbjct: 206 LYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFASMGFRCP-----KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
+ C + K V DFL T H T
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISL--DHHSMTL---T 299
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
E + + + D P + ++ L+ + E ++ ++
Sbjct: 300 PDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRLSI----IA--ESIRDGLAT------ 343
Query: 518 RNSFVYIF--KLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSE 575
+++ ++ KL I
Sbjct: 344 WDNWKHVNCDKLTTI--------------------------------------------- 358
Query: 576 ISMTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSN 632
I ++ L P Y++ FPP A IP L + +W + V N
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDVMVVVN 409
Query: 633 AGRFFKQYALLLGVNQMAS----ALFRFIAVTGRNMVV--ANTFGSFALLVLLSLGGFIL 686
+Y+L+ + ++ +++ + V N + + + I
Sbjct: 410 ---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 687 SREDIKKWWKWAYWCSPLTY----AQNAIVANEF----LGHSW--KKFTQDSSETLG--- 733
D Y+ S + + ++ F L + +K DS+
Sbjct: 467 PYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 734 ----VQVLKS-RGFFA-HEYWYWLGLGALFGFVL-----LLNFAYT----LALTFLDPFE 778
+Q LK + + ++ Y + A+ F+ L+ YT +AL
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA----- 574
Query: 779 KPRAVITEEIESNEQDDR 796
I E E+++Q R
Sbjct: 575 -EDEAIFE--EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 4e-14
Identities = 93/600 (15%), Positives = 170/600 (28%), Gaps = 195/600 (32%)
Query: 58 KGILTTSRGEANEVD-VYNLGLQERQ--RLIDKLVKVTDVDNERFL---LK-----LKNR 106
K IL+ E+D + RL L+ + ++F+ L+ L +
Sbjct: 43 KSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 107 IDRVGIDLPKVEVRY-EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHL 165
I + Y E + N F K+ + + L LR + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR------LYNDNQVFAKYNVSRLQPYLK-LR------QAL 144
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTL------------------------------- 194
L+ V+ + G SGKT +
Sbjct: 145 LELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 195 ----LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH---------DNHIGEM 241
L L ++DP + N + + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 242 TVR--ETL-AFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
V+ + AF+ C+ + TR++ +T+ I D T + ++
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSL 306
Query: 298 ITDYYLKVLGLDVCADTMVGD---EMIRGISGGQKKRVTTGEMMVGP-ALALFMDEISTG 353
+ LK L D E++ P L++ + I G
Sbjct: 307 L----LKYLDCR------PQDLPREVLTT----------------NPRRLSIIAESIRDG 340
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD------------- 400
L + ++ VNC + I S +++L+PA E +FD + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 401 GQIVYQGPRELVLEFFA-SMGFRCPKRK--GVADFLQEVTSRKDQR-------------- 443
++ +V + S+ + PK + E+ + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 444 --------------QYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFD 483
QY+ H + + F F F + QKI + T ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWN 515
Query: 484 KSKSHRAALTT-ETYGVGKRELLKANISRELL-------LMKRNSFVYIFK---LIQIAF 532
S S L + Y K + + E L L K + K L++IA
Sbjct: 516 ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 100/669 (14%), Positives = 196/669 (29%), Gaps = 212/669 (31%)
Query: 401 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 444
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 501
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 502 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 553 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 608
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 716
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 717 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 751
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 752 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 792
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 793 QDDRIGGNVQLSTLGGSSNHNTRS--GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 850
+ + S + +T S +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 851 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 898
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 899 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 956 VTIYESLLF 964
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 3e-12
Identities = 95/603 (15%), Positives = 166/603 (27%), Gaps = 208/603 (34%)
Query: 39 EEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNER 98
EE L+ Y L I T R + +Y ++R RL + DN+
Sbjct: 84 EEVLR-------INYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYN--------DNQV 125
Query: 99 FLLKLKNRIDRVGIDLPKVEVRYEHL-NVEAEAF-------------LASNALPSF---I 141
F K + R L + L + +A + S+
Sbjct: 126 FA---KYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 142 KFYTNIF----------EDILN-----YLRIIP---SKKRHLTILKDVSGVIKPGRLTLL 183
K IF E +L +I P S+ H + +K I+ LL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 184 LGPPSSGKTTLLLALAGKLD---------------PTLKVSGTVTYNGHDMDEFVPQRTA 228
P + LL+ L L +T + +F+ T
Sbjct: 239 KSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L + P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PREVLTTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
A ++ D + V ++ + + E +K
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L + SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT---------------------FDSDDLIP 466
Query: 440 KDQRQYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T-ETYG------VGKRELL-----------KANISR-------ELLLMKRNSFVYIFKLI 528
+ Y K E L + N+ + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 529 QIA 531
Q+
Sbjct: 586 QVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 4e-09
Identities = 71/358 (19%), Positives = 111/358 (31%), Gaps = 115/358 (32%)
Query: 21 WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQE 80
N + AF+ S + IL T+R D +
Sbjct: 254 QNAKAWNAFNLSCK-------------------------ILLTTR-FKQVTDFLSAATTT 287
Query: 81 RQRLIDKLVKVTDVDNERFLLK-LKNRIDRVGIDLPKVEV-------------------- 119
L + +T + + LLK L R DLP+ EV
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPR-EVLTTNPRRLSIIAESIRDGLA 342
Query: 120 ---RYEHLNVEA-----EAFLASNALPS--FIKFYTN--IFEDILNYLRIIPSKKRHLTI 167
++H+N + E+ L N L + K + +F + IP+ L++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAH----IPTIL--LSL 394
Query: 168 L------KDVSGVI-KPGRLTLLLGPPSSGKTT---LLLALAGKLD--PTLKVSGTVTYN 215
+ DV V+ K + +L+ P + + L L KL+ L S YN
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 216 ---GHDMDEFVPQRTAAYISQHDNHIG------EMTVRET--------LAF--------S 250
D D+ +P Y +HIG E R T F S
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIAT--EGQEANVITDYYLKVL 306
G+ L +L + K DP + + AI E N+I Y +L
Sbjct: 512 TAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-05
Identities = 39/232 (16%), Positives = 69/232 (29%), Gaps = 56/232 (24%)
Query: 773 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTD 820
F D F P+++++ EEI+ D + G ++L S +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 821 DIRGQ-----------QSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869
++ + S+ R + F Y+V +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQ 135
Query: 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI- 927
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 136 PYLK---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 928 --TISGYPKK-------QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLR 969
+ Q+ +I + ++D S S+ A LR
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELR 235
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 8e-17
Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 66/255 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 220 DE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ F+P+ +++V + L A GV + +
Sbjct: 74 TKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------- 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
L+ + + + +S G +RV
Sbjct: 119 -----------------------------LESVEVLDLKKK------LGELSQGTIRRVQ 143
Query: 334 TGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
++ + +D+ +D + +++ + I G +IS + E
Sbjct: 144 LASTLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYC 197
Query: 393 DDIILLSDGQIVYQG 407
D L
Sbjct: 198 DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 940
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-----TYLKPLKGEIIYNGVPIT-KVKG 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLR 969
+I + + I +++ + L A L
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY 106
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 36/254 (14%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ + ++ + G + +LG GK+TLL L G P G +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA- 344
A + L L L A +SGGQ++ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
++P+ AY M E L F A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------------ 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
E + + ++ GL + + S G +++
Sbjct: 119 ----------------SSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ L+Q G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 73/260 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L++VS VI G L+ G SGK+TLL +AG ++PT SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 228 AAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Q+ ++ V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG-----ISGGQKKRVTTGEMMVGP 341
++ +GLD + + +SGG+K+RV
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV--------- 147
Query: 342 ALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
A+A L +DE GLD ++ + + G VI + +
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHV 205
Query: 393 DDIILLSDGQIVYQG-PREL 411
D +++L G+ V+ G E
Sbjct: 206 DRVVVLEKGKKVFDGTRMEF 225
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L++++ + G ++LGP SGKTTLL A++G L P SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
E LK L L + + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +++ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFASMGFRCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 5e-13
Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 84/296 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L+ G I+ G + ++GP GKTT + LAG +PT G V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
T AY Q+ E TV E L+ ++L +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL--- 455
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
LK LG+ D V D +SGG+ +RV +
Sbjct: 456 ------------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + +R + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 66/218 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ ++K G + ++GP +GKTT + LAG+L P L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPQRTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ +K L L+ V D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELE-----NVLDRELHQLSGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLR 367
+ AL F DE S+ LD ++ +R
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 824 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 880
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITIS 930
L G R G + ++G +G GKTT + +LAG T G + ++T++
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA 420
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 41/212 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
M A + L+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+M P + + MDE G+ I N + +
Sbjct: 168 LMTNPKM-IVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 65/278 (23%), Positives = 102/278 (36%), Gaps = 88/278 (31%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V GTV + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTELARREKAAGIKPD 278
R I +AF Q GV ++ + T L G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVT 333
D + +L + ++++ G SGG+KKR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKRND 174
Query: 334 TGEMMV-GPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS--- 380
+M V P L + +DE +GLD I VN LR +++
Sbjct: 175 ILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVTHYQ 224
Query: 381 -LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 225 RILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 64/292 (21%), Positives = 101/292 (34%), Gaps = 78/292 (26%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K L+ G IK G + ++GP GKTT + LAG +PT G + ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ PQ YI E TV E L+ ++L +
Sbjct: 351 --YKPQ----YIKAD----YEGTVYELLSKIDA-----------SKLNSNFYKTEL---- 385
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK LG+ D V + +SGG+ +RV ++
Sbjct: 386 -----------------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLFDDIIL- 397
A +DE S LD + +R + N TA V+ D+++
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE------------HDVLMI 465
Query: 398 --LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+SD +V++G E A R+G+ FL +T R+D
Sbjct: 466 DYVSDRLMVFEG--EPGKYGRALPPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 57/331 (17%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ V+K G + ++GP +GK+T + LAG+L P L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPQRTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGTRYEMLTELARREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------S 380
V + AL F DE S+ LD +R+ G +V+ +
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR--LSEEGKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFFAS------MGFRCPKRKG 428
+L L D I ++ VY +G R + EF + FR P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 459
+ V ++ + K Y ++
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITIS 930
L G + G + ++G +G GKTT + +LAG T G I ++T++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA 350
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
KK L +G K G + +LGP GKTT L G++ G+VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
D V A ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +++ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D II+ G+ G + + G+ +FL+E VT R+D
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 49/338 (14%), Positives = 100/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYN-------GHD 218
K K + +LG GKTT+L LAG++ P + V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 M-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ + + + + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + +R+ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFASMGFRCPKRKGVADF 432
L D I ++ VY G + + + + + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 470
L+EV+ + + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 939
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--------KVSGTVTYNGH 217
+ +PG++ L+G GK+T L LAGK P L + G
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 218 DMDEFVP-----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
++ + A Q+ ++I ++ + + + ++ R K
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKI 208
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
++ + ++ L SGG+ +R
Sbjct: 209 LQLEN--------------------VLKRDIEKL------------------SGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SL 381
+G + DE S+ LD +R + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHDLSV 283
Query: 382 LQPAPETYDLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 57/220 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K + +L G + +++G +GKTTL+ LAG L P G
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+P+ + Q TVR+ R + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+K L +D D V +SGG+ +RV +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
PA +DE S LDS +R+ +++
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 847 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 900
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 901 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 935
G +G GKTTL+ +LAG + G + +S P+K
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK 421
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 68/279 (24%), Positives = 107/279 (38%), Gaps = 94/279 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
ILK V+ V+ G + L+GP +GK+TL LAG P V G + +G ++ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTEL-ARREKAAGIKP 277
+R + LAF Q GV + L A+ +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR------ 111
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
+ + + + L++L D + + G SGG+KKR
Sbjct: 112 EVGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRN 152
Query: 333 TTGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS-- 380
++ ++ P A+ +DE +GLD I VN +R N G VI+
Sbjct: 153 EILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHY 202
Query: 381 --LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L QP D + ++ DG++V G EL LE
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALE 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 65/308 (21%), Positives = 102/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L ++ I G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
YY V + CA T +G+ +G+ SGGQK+RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQRQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 100/295 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+P +R Y+ Q H +TV +A+ T + +R +A
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
L++ G+ A +SGGQ++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385
ALA + +DE + LD QI + +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFV---- 195
Query: 386 PETYD------LFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++D D I ++ G+I+ P EL +R P A F+
Sbjct: 196 --SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+K + + G++ L+G +GKTT L A+AG + G + +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSAR-CQGVGTRYEMLTEL-----ARREKAA 273
A + + E+TV E L A++ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 47/197 (23%), Positives = 71/197 (36%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ VS I+ G + LLGP SGKTT+L +AG PT G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 QRTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 114/272 (41%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
L+ A D I++L +G + G
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYG 211
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 58/302 (19%), Positives = 102/302 (33%), Gaps = 89/302 (29%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ L+ IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F+ PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TS 438
Sbjct: 268 LH 269
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG-IKPDPDID 282
R+ ++SQ D+ I T+RE L + G T ++ ++ A ++ PD
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTYGLE--GDYTDEDLW-QVLDLAFARSFVENMPD-- 127
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVG 340
L +T VG+ RG+ SGGQ++R+ +
Sbjct: 128 ------------------------QL----NTEVGE---RGVKISGGQRQRLAIARAFLR 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDII 396
L +DE + LDS + + L ++ T VI S + A D I
Sbjct: 157 NPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDA-------DKIY 208
Query: 397 LLSDGQIVYQG 407
+ GQI G
Sbjct: 209 FIEKGQITGSG 219
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 115/273 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP 408
L+ A D I++L +G + G
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGT 241
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L ++S ++ G ++LGP +GKT L +AG P SG + +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 225 QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ A++ Q H M V++ L F R + + ++
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI----------KDPKRVL----- 109
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ + L ++ + D +SGG+++RV
Sbjct: 110 ---------------DT-------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 8e-07
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFV 223
+ LK+V+ IK G ++GP SGK+T +L + G LD PT G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PQRTAAY-------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q N I +T E + ++ ++ E+
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-------IFKYRGAMSGEER----- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG---DEMIRGISGGQKKRVT 333
+ A E LK+ L + +++ SGGQ++RV
Sbjct: 122 ---------RKRALE----------CLKMAEL---EERFANHKPNQL----SGGQQQRVA 155
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
+ P + + D+ T LDS T +I+ L++ ++ G V+ ++
Sbjct: 156 IARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIV 404
+ II L DG++
Sbjct: 212 GERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 934
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 935 KQETFAR 941
+ T R
Sbjct: 75 DELTKIR 81
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDE 221
R ILK +S +K G ++G SGK+TLL L G LD PT G V G ++D
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDY 70
Query: 222 FVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ + ++ Q I E+T E + G + +E+
Sbjct: 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ L LGL D + +SGG+++RV
Sbjct: 122 ------------------EYL-------LSELGL---GDKL--SRKPYELSGGEQQRVAI 151
Query: 335 GEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ P L LF DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELT 206
Query: 393 DDIILLSDGQIV 404
+ + DG++V
Sbjct: 207 HRTLEMKDGKVV 218
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQ 936
L G+S + + G +++G SG+GK+TL+ +L T G + +K+
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 86/285 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
D IG +T E +AF +
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+I ++ +A K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDS----STTFQIVNCLRQNIHINSGTAVISLLQPAPETYD- 390
+V L +DE + LD+ S + + + G ++ + ++D
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALV-----KEVQSRLGVTLLVV------SHDP 201
Query: 391 -----LFDDIILLSDGQI--------VYQGPREL-VLEFFASMGF 421
+ D + +L G++ +Y P + V +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 89/267 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q DN + ++ + ++ + P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVT 333
+ A + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----S 380
A+A L DE ++ LD + I+ + I +I S
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
++ A D II++ G+IV QG
Sbjct: 206 TVKNA-------DRIIVMEKGKIVEQG 225
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 57/273 (20%), Positives = 95/273 (34%), Gaps = 98/273 (35%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+ ++ + PG++T L+GP SGK+T+ L PT G V +G + ++
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89
Query: 226 ---RTAAYISQHDNHIGE-----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
A + Q E + RE +A+ T E+ A
Sbjct: 90 YLHTQVAAVGQ------EPLLFGRSFRENIAYG--LTRTPTMEEI-------TAVA---- 130
Query: 278 DPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQ 328
E+ I+ Y DT VG+ G SGGQ
Sbjct: 131 ---------------MESGAHDFISGFPQGY-----------DTEVGE---TGNQLSGGQ 161
Query: 329 KKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
++ V ALA L +D ++ LD+ ++ L ++ S T ++
Sbjct: 162 RQAV---------ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 380 -----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
SL + A I+ L +G + QG
Sbjct: 213 ITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 75/183 (40%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ G R E RR +
Sbjct: 85 -----LSVYRNIAY-------GLRNVERVERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGG+++RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-05
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+ D++ ++GP +GK+TL+ L G+L PT SG V + +
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------C 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AIATEGQEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +++ IK G LLGP SGK+TLL +AG PT SG + ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI----RGISGGQKKRVTT 334
+ID ++ +A K+L + D+++ +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 335 GEMMVGPALALFMDE 349
+V L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 313 DTMVGDEMIRGI--SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 369
DT+VG+ +G+ SGG+++R+ ++ P + + DE ++ LDS T + + +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVE-D 200
Query: 370 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ N +I S + A + IILL+ G+IV +G
Sbjct: 201 LRKNRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ + VS +K G LLGP GKTT LL LAG PT SG + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGI 275
R + Q H MTV E +AF R + + E+ +R + A
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRISK-----DEVEKRVVEIARK 120
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 991 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.92 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.84 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.83 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.79 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.79 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.76 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.76 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.71 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.71 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.68 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.68 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.65 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.65 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.64 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.64 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.64 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.63 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.63 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.63 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.63 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.63 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.63 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.63 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.62 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.62 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.62 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.62 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.61 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.61 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.61 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.61 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.59 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.59 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.59 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.59 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.59 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.58 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.58 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.58 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.57 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.56 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.56 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.56 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.56 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.55 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.55 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.55 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.55 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.55 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.54 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.54 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.54 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.54 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.53 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.52 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.51 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.51 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.5 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.49 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.49 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.48 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.47 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.47 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.47 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.46 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.46 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.45 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.45 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.45 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.45 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.38 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.37 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.36 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.36 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.36 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.36 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.35 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.35 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.34 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.33 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.31 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.31 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.26 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.24 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.23 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.23 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.21 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.21 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.18 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.17 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.16 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.15 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.13 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.13 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.11 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.08 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.05 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.04 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.03 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.01 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.96 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.95 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.95 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.94 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.88 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.87 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.83 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.8 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.8 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.8 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.78 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.76 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.75 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.72 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.7 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.7 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.68 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.68 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.67 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.67 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.67 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 98.64 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.64 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.64 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.62 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.61 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.6 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.59 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.59 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.58 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.57 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.56 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.56 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.54 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.53 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.5 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.49 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.49 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.45 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.44 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.43 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.42 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.4 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.39 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.38 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.34 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.34 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.34 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.31 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.31 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.3 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.29 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.29 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.28 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.27 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.26 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.25 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.24 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.22 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.19 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.17 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.16 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.16 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.14 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.12 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.12 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.11 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.1 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.09 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.06 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.06 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.03 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.02 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.99 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.97 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.95 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.95 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.94 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.93 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.9 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.89 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.88 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.87 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.87 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.82 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.81 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.79 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.73 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.71 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.71 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.68 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.68 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.67 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.66 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.66 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.66 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.65 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.64 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.6 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.6 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.58 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.56 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.55 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.51 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.51 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.5 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.49 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.49 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.46 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.46 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.44 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.44 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.43 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.42 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.42 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.42 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.41 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.41 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 97.41 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.39 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.37 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.37 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.36 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.35 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.34 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.3 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.28 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.25 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.24 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.23 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.23 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.19 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.17 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.16 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.16 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.12 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.11 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.09 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.09 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.09 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.07 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.06 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.05 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.03 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.02 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.02 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.01 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.97 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.96 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.95 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.85 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.85 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.85 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.84 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.84 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.84 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.83 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.81 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.8 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.8 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.79 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.79 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.78 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.78 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.77 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.76 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.73 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.72 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.72 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.71 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.67 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.65 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.64 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.62 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.57 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.57 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.55 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.54 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.51 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.48 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.47 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.47 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.46 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.44 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 96.43 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.42 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.41 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.37 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.36 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.3 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.28 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.26 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.26 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.26 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.25 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.25 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.2 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.19 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.17 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.16 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.16 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.11 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.09 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.08 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.07 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.06 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.05 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.03 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.0 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.99 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.96 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.95 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.91 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.9 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.88 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.82 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.82 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.76 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.74 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.74 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.72 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.64 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.61 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.59 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.58 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.56 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.52 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.5 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.49 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.47 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.46 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.45 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.44 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.44 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.39 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 95.39 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.37 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.36 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.35 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.34 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.32 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.28 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.27 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.26 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.2 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.17 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.16 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.13 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.12 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.1 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.08 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.08 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.06 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.99 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.97 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.95 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.93 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 94.93 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.93 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.91 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.89 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.86 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 94.86 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.85 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.82 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.81 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.81 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.78 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.76 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.76 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 94.72 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.7 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.67 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.64 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.63 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.63 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.61 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.59 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.58 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.57 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.56 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.54 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.54 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.49 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 94.48 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.47 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 94.43 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.4 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.4 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.39 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.32 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.28 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.28 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.25 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.25 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.22 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.21 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.19 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.17 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=550.73 Aligned_cols=257 Identities=22% Similarity=0.308 Sum_probs=198.9
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC--CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
++....++|+.++++..++ +.+ ....+... ...+|+|+|+++.++.
T Consensus 380 ~~~~~s~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~I~~~nvsF~Y~~-------------------------- 427 (1321)
T 4f4c_A 380 GTAQGAASGIYEVLDRKPV-----IDS-SSKAGRKDMKIKGDITVENVHFTYPS-------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHTTTSCC-----SSC-SSSCCCCCCCCCCCEEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccc-cccccccCCCCCCcEEEEEeeeeCCC--------------------------
Confidence 4566677888777765443 111 11122222 2457999999998631
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
...+.+|+|||++|+||+++||+||||||||||+++|.|+++|+ +|+|++||+++++... ++.++||+|
T Consensus 428 -----~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q 499 (1321)
T 4f4c_A 428 -----RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQ 499 (1321)
T ss_dssp -----STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred -----CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCC
Confidence 12346999999999999999999999999999999999999998 9999999999988764 467999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++. +++.||+|||.|+.. ...++. ..++....+. +. .+-.|++..|
T Consensus 500 ~~~-Lf~~TI~eNI~~g~~----~~~~~~---------------------v~~a~~~a~l------~~--~i~~lp~G~~ 545 (1321)
T 4f4c_A 500 EPA-LFNCTIEENISLGKE----GITREE---------------------MVAACKMANA------EK--FIKTLPNGYN 545 (1321)
T ss_dssp SCC-CCSEEHHHHHHTTCT----TCCHHH---------------------HHHHHHHTTC------HH--HHHHSTTTTS
T ss_pred cce-eeCCchhHHHhhhcc----cchHHH---------------------HHHHHHHccc------hh--HHHcCCCCCc
Confidence 765 567899999999742 111111 1111111110 11 1335789999
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
|.||++. ..||||||||++||||++++|+||+||||||+||+.+...|.++|+++. .++|+|+..|+. .+...||
T Consensus 546 T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD 620 (1321)
T 4f4c_A 546 TLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNAD 620 (1321)
T ss_dssp SEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCS
T ss_pred cEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccH--HHHHhCC
Confidence 9999765 4699999999999999999999999999999999999999999999875 467887766554 5778999
Q ss_pred eEEEecCCeEEEecCHHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++|+|+++|+++++++
T Consensus 621 ~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 621 LIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEEETTEEEEEECHHHHHT
T ss_pred EEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=505.30 Aligned_cols=257 Identities=20% Similarity=0.326 Sum_probs=191.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC--CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
+.....++|+.++++..++ ..+ ....+.+ ....+++|+|+++.+..
T Consensus 352 ~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~-------------------------- 399 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS-------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----CCc-ccccCCCCCCCCCeEEEEEEEEEcCC--------------------------
Confidence 3455566777777665443 000 0011111 22457999999987621
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
.....+|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|
T Consensus 400 -----~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 471 (1284)
T 3g5u_A 400 -----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQ 471 (1284)
T ss_dssp -----TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECS
T ss_pred -----CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcC
Confidence 11245999999999999999999999999999999999999998 9999999999876654 357999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++.+++ .||+||+.|+... ...+. +.+..+.++ .+.. +..|++..|
T Consensus 472 ~~~l~~-~ti~eNi~~g~~~----~~~~~---~~~~~~~~~------------------------~~~~--i~~l~~g~~ 517 (1284)
T 3g5u_A 472 EPVLFA-TTIAENIRYGRED----VTMDE---IEKAVKEAN------------------------AYDF--IMKLPHQFD 517 (1284)
T ss_dssp SCCCCS-SCHHHHHHHHCSS----CCHHH---HHHHHHHTT------------------------CHHH--HHHSTTGGG
T ss_pred CCccCC-ccHHHHHhcCCCC----CCHHH---HHHHHHHhC------------------------cHHH--HHhcccccc
Confidence 887765 5999999997421 11111 111111100 0111 234677889
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
|.+|+ ....|||||||||+|||||+.+|+||+||||||+||+.+...+.+.|+++. .++|+|+. +|....+ ..||
T Consensus 518 t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~i-tH~l~~i-~~~d 592 (1284)
T 3g5u_A 518 TLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVI-AHRLSTV-RNAD 592 (1284)
T ss_dssp CCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEE-CSCHHHH-TTCS
T ss_pred ccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEE-ecCHHHH-HcCC
Confidence 99985 456799999999999999999999999999999999999999999998864 35666654 5555555 5599
Q ss_pred eEEEecCCeEEEecCHHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++|+++++|+++++++
T Consensus 593 ~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 593 VIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp EEEECSSSCCCCEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=396.07 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=180.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (991)
.+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|+..+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876542 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+.+..+.... +....++++|+.+||.+.+|.
T Consensus 117 ~~~~TV~env~~~~~~~~~~~~----------------------------------~~~~~v~~lL~~vgL~~~~~~--- 159 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPKD----------------------------------EVKRRVTELLSLVGLGDKHDS--- 159 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCHH----------------------------------HHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcC---
Confidence 9999999999998776543110 112246778999999887764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.+|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.++.+.|+|+ ++|...++.++||+|++
T Consensus 160 --~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~-vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 160 --YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAV 236 (366)
T ss_dssp --CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEEEE
Confidence 456899999999999999999999999999999999999999999999987654555555 56788899999999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=392.82 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC----CCccc-cceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVP-QRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 45999999999999999999999999999999999999998 99999999987 32222 467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+.+.++.... +....++++++.+||.+..|.
T Consensus 94 ~ltV~eni~~~l~~~~~~~~----------------------------------~~~~~v~~~l~~~gL~~~~~r----- 134 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTA----------------------------------QERQRIEAMLELTGISELAGR----- 134 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSH----------------------------------HHHHHHHHHHHHHTCGGGTTS-----
T ss_pred CCCHHHHHHHHHHHcCCChH----------------------------------HHHHHHHHHHHHcCCchHhcC-----
Confidence 99999999998765432110 011245678999999887764
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..+.|+ +.++|+..++..+||+|++|+
T Consensus 135 ~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tv-i~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA-VFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEE-EEECCCHHHHHHHCSEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHHCCEEEEEE
Confidence 4568999999999999999999999999999999999999999998888766555554 556778899999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998853
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=394.23 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876544 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..| +++.+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~-----r~p~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLD-----RKPKA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----CCGGG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-----CChhH
Confidence 999999987654211 011234677899999988776 45568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE-EECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654555555 57788999999999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=368.51 Aligned_cols=207 Identities=23% Similarity=0.262 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 9999999999876543 2359999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc-cccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (991)
++.+||+||+.++......+... + .+....+.++++.+||.+.. |
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------G------------------------EERRKRALECLKMAELEERFAN--- 140 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------H------------------------HHHHHHHHHHHHHTTCCGGGTT---
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------H------------------------HHHHHHHHHHHHHCCCChhhhh---
Confidence 99999999999987543111000 0 00112356688999997643 5
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.+.+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.+..+.|+|+++| +.. +.++||+|+
T Consensus 141 --~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH-d~~-~~~~~d~i~ 216 (235)
T 3tif_A 141 --HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DIN-VARFGERII 216 (235)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHH-HHTTSSEEE
T ss_pred --CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC-CHH-HHHhCCEEE
Confidence 4456899999999999999999999999999999999999999999999987644677766654 444 568999999
Q ss_pred EecCCeEEEecCHHHH
Q 001957 397 LLSDGQIVYQGPRELV 412 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (991)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=385.48 Aligned_cols=207 Identities=27% Similarity=0.366 Sum_probs=178.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++.. +. +....++++++.+||++..|. ++.+
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r-----~~~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDR-----KPTQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTS-----CGGG
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcC-----Chhh
Confidence 99999987543221 00 012246778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY-VTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-42 Score=374.37 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=174.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCC-CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD-NHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d-~~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 4999999999999999999999999999999999999998 99999999998421 1236799999985 3556
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+....+... .+....++++++.+||.+..|..
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~---- 140 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKP---- 140 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSB----
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC----
Confidence 8999999999876543210 00112456789999998877654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|+ ++|...++.++||+|++|+
T Consensus 141 -~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~-vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 141 -THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII-ATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp -GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE-EESCCSSGGGGCSEEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE-EecCHHHHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999987334556555 5677889999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=372.12 Aligned_cols=204 Identities=27% Similarity=0.358 Sum_probs=176.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45999999999999999999999999999999999999998 9999999999876543 35689999999888999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+....... .....++++++.+||.+..|.. +
T Consensus 101 tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRD-----Y 139 (266)
T ss_dssp BHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSB-----G
T ss_pred CHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCC-----c
Confidence 9999999976432110 0112356789999998877654 4
Q ss_pred CCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..|||||||||+||+||+. +|++|||||||+|||+.++.++++.|+++.+. ++++|+.++|+.+++.++||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 5899999999999999999 99999999999999999999999999998764 4445555678888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=362.75 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 35999999999999999999999999999999999999998 9999999999865432 1569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+....+... . +....++++++.+||.+..+..
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 137 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------K------------------------EAKERGEYLLSELGLGDKLSRK-- 137 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCTTCTTCC--
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 999999999999765432110 0 0112356789999998877654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +.|+|+++ |+...+ ++||+|++
T Consensus 138 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vt-Hd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 138 ---PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVT-HERELA-ELTHRTLE 211 (224)
T ss_dssp ---GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEC-SCHHHH-TTSSEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEc-CCHHHH-HhCCEEEE
Confidence 4689999999999999999999999999999999999999999999998764 66666655 555555 89999999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=385.16 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=178.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+.+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r-----~~~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNR-----YPWQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTC-----CGGG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhC-----Chhh
Confidence 999999876543210 0011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY-VTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE-ECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999885
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=367.44 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Ccc---ccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|+..+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999999884 111 1356999999998999
Q ss_pred CCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.|+. +..+... . +....++++++.+||.+..|..
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~--- 156 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------E------------------------KAEAKAMELLDKVGLKDKAHAY--- 156 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSC---
T ss_pred CCCHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcCC---
Confidence 999999999964 3322110 0 0112356789999998877654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+..++.++||+|++|
T Consensus 157 --~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~-vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 157 --PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp --GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHHHHHCSEEEEE
T ss_pred --hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EcCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999865 3555555 567788889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=384.56 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=177.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC------ccc-cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------FVP-QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~~~-~~~~~yv~Q~d~~ 237 (991)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 45999999999999999999999999999999999999998 9999999998754 322 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+.+.++... . +....++++++.+||++..|.
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r--- 135 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNR--- 135 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcC---
Confidence 999999999999876543210 0 011245678999999887764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++
T Consensus 136 --~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 136 --KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp --CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-ECCCHHHHHHhCCEEEE
Confidence 456899999999999999999999999999999999999999999999987644666555 46778899999999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999885
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=384.66 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... . +....++++++.+||.+..|. ++.+
T Consensus 101 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r-----~~~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNR-----YPAQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----CTTT
T ss_pred HHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcC-----Chhh
Confidence 999999865432210 0 011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=368.86 Aligned_cols=205 Identities=24% Similarity=0.323 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----------cc------ccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------PQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------~~------~~~~~ 228 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999998851 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC
Q 001957 229 AYISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (991)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (991)
+||+|+..+++.+||+||+.|+. +..+... . +....++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------H------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------H------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcC
Confidence 99999999999999999999964 3322110 0 01123567899999
Q ss_pred Cccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 308 LDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 308 L~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
|.+. .+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+..
T Consensus 142 L~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~v-tHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVV-THEMG 214 (262)
T ss_dssp CCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEE-CSCHH
T ss_pred CCchhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHH
Confidence 9877 6654 468999999999999999999999999999999999999999999999865 36666654 56778
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 888999999999999999999998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=383.37 Aligned_cols=204 Identities=21% Similarity=0.279 Sum_probs=176.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC-----cc-ccceEEEEecCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-----FV-PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (991)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 22 24789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.|+.+.++... . +....++++++.+||++..|. .
T Consensus 97 ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~~-----~ 137 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNH-----F 137 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----C
T ss_pred CCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcC-----C
Confidence 999999999876543210 0 011245678999999887764 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++
T Consensus 138 ~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEEC
Confidence 56899999999999999999999999999999999999999999999987644666555 46778899999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999885
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=381.02 Aligned_cols=206 Identities=27% Similarity=0.390 Sum_probs=178.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... . +....++++++.+||++..|. ++.+
T Consensus 105 ~eni~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~r-----~~~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------D------------------------EMDARVRELLRFMRLESYANR-----FPHE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----CGGG
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcC-----Cccc
Confidence 999999876543210 0 011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-ECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644656555 56788899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=380.56 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=182.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999999875433 467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+.++... . ..++++++.+||++..|. ++.+||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~-----~~~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR-----NPLTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS-----CGGGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC-----ChhhCC
Confidence 9999875432110 0 135678999999887765 456899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~-vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987644556555 4677889999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 406 QGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
.|+++++. ..|.....+.|+-
T Consensus 209 ~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 209 VGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EECHHHHH--------SSCCTTHHHHHHC
T ss_pred ECCHHHHH--------hCcccHHHHHhcC
Confidence 99999874 3455555566653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=381.17 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 35999999999999999999999999999999999999998 9999999999977543 46799999987766 57
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|||.|+..... .+...+ ..+..+ ....+ ..++...+|.+| +..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~---~~~~~~------------------------l~~~i--~~lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEA---AAQAAG------------------------IHDAI--MAFPEGYRTQVG-ERG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHH---HHHHHT------------------------CHHHH--HHSTTGGGCEES-TTS
T ss_pred cHHHHHHhhcccCC----HHHHHH---HHHHhC------------------------cHHHH--HhccchhhhHhc-CCc
Confidence 99999998753210 000000 000000 01111 235557788887 456
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ ++|+|+ ++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIV-VAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EEcChHHHHc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999753 566665 5566666655 9999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=366.24 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999999865432 3469999999988999
Q ss_pred CCHHHHHHHHHHh--cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 241 MTVRETLAFSARC--QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 241 lTV~E~l~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+||+||+.++... .+. .....+ ... ... ..+....++++++.+||++..+..
T Consensus 97 ~tv~enl~~~~~~~~~~~------~~~~~~----~~~-~~~------------~~~~~~~~~~~l~~~~l~~~~~~~--- 150 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP------LNSLFY----KKW-IPK------------EEEMVEKAFKILEFLKLSHLYDRK--- 150 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH------HHHHHH----CSS-CCC------------CHHHHHHHHHHHHHTTCGGGTTSB---
T ss_pred CcHHHHHHHHHhhhccCc------cccccc----ccc-cCC------------HHHHHHHHHHHHHHcCCchhhCCC---
Confidence 9999999997532 110 000000 000 000 000112356789999998877655
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|+ ++|..+++.++||+|++|
T Consensus 151 --~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 151 --AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLI-IEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp --GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCCSTTGGGCSEEEEE
T ss_pred --chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999865 3556555 466778899999999999
Q ss_pred cCCeEEEecCHHH
Q 001957 399 SDGQIVYQGPREL 411 (991)
Q Consensus 399 ~~G~iv~~G~~~~ 411 (991)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999888
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=363.07 Aligned_cols=206 Identities=25% Similarity=0.309 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999986421 2357999999998999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|.....+... . +....++++++.+||++..+.. +.
T Consensus 105 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~-----~~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------S------------------------EIEEMVERATEIAGLGEKIKDR-----VS 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHHCCGGGGGSB-----GG
T ss_pred HHHHHHHHHHHcCCCh----------H------------------------HHHHHHHHHHHHCCCchHhcCC-----hh
Confidence 9999999765432110 0 0112356688999998877754 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiiv-tHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVS-SHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-ECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEE-cCCHHHHHHHCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999865 45565554 567778889999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=358.80 Aligned_cols=204 Identities=22% Similarity=0.322 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999999865432 2459999999989999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC-CcccccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (991)
+||+||+.|+.... .. +. +....++.+++.++ |.+..+.
T Consensus 96 ltv~enl~~~~~~~-~~-~~---------------------------------~~~~~~~~~l~~~~~l~~~~~~----- 135 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-KE---------------------------------GIKRDLEWIFSLFPRLKERLKQ----- 135 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-SS---------------------------------HHHHHHHHHHHHCHHHHTTTTS-----
T ss_pred CcHHHHHHHhhhcC-CC-HH---------------------------------HHHHHHHHHHHHcccHhhHhcC-----
Confidence 99999999864211 00 00 00123456788884 8766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++.++||+|++|+
T Consensus 136 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~v-tHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 136 LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLV-EQNALGALKVAHYGYVLE 213 (240)
T ss_dssp BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEE-ESCHHHHHHHCSEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865 56666665 566778899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=358.35 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=172.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||+.+++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999998 999999999986432 2467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+..+. ... ...++++++.+||.+..|.. +..||
T Consensus 90 nl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VER--------------------------DRRVREMAEKLGIAHLLDRK-----PARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTTCTTTTTCC-----GGGSC
T ss_pred HHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcCCHHHhcCC-----hhhCC
Confidence 99997543210 000 12356688999998877654 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.++.+.|+|++ +|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV-THDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE-ESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865446676665 566778899999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=356.86 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 45999999999999999999999999999999999999998 999999999876432346799999984 56788999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--ccccccccCccc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMI 321 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (991)
+||+.|+.... ... . +....++++++.+||. +..+.. +
T Consensus 97 ~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD--------------------R--------------DPVPLVKKAMEFVGLDFDSFKDRV-----P 136 (266)
T ss_dssp HHHHHHTTTTT-CTT--------------------S--------------CSHHHHHHHHHHTTCCHHHHTTCC-----G
T ss_pred HHHHHHHHHhc-CCH--------------------H--------------HHHHHHHHHHHHcCcCCcccccCC-----h
Confidence 99999875321 100 0 0112356688999998 776654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+. +.|+|++ +|...++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~v-tHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILI-SHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999998653 5565554 56677888999999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=358.63 Aligned_cols=208 Identities=29% Similarity=0.313 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Ccc---ccceEEEEecCCCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI- 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~- 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|+..++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999999875 322 235799999986543
Q ss_pred -CCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 239 -GEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 239 -~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+||+||+.|+.... +... ... .+....++++++.+||.+..+..+
T Consensus 111 ~~~ltv~enl~~~~~~~~~~~~-------------------~~~------------~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGVYQ-------------------DID------------DEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp CTTSBHHHHHHTTC----------------------------CC------------HHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCCHHHHHHhhhhhcccccc-------------------CCc------------HHHHHHHHHHHHHcCChhHhcCCh
Confidence 3569999999864210 0000 000 001123567899999988776554
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE--EEEEecCCchhHhhcCe
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDD 394 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~--ii~i~q~~~~~~~lfD~ 394 (991)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+ |++ +|...++.++||+
T Consensus 160 -----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iiv-tHd~~~~~~~~d~ 232 (279)
T 2ihy_A 160 -----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYV-THFIEEITANFSK 232 (279)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEE-ESCGGGCCTTCCE
T ss_pred -----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEE-ecCHHHHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 6676 554 5677788999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 233 v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 233 ILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEEETTEEEEEEEHHHHC
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999988763
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=348.51 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999999875432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-------ccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-------ADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~dt 314 (991)
||+||+.|+... ... ..++++++.++|.+. .++
T Consensus 98 tv~enl~~~~~~----~~~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----MSV------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----CCH------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----CCH------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999886310 000 011223444444432 234
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++. |....+ ..||+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivt-H~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIA-HRLSTV-KNADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEEC-SSGGGG-TTSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEe-CCHHHH-HhCCE
Confidence 443 4467899999999999999999999999999999999999999999999983 366666665 455555 45999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=349.51 Aligned_cols=205 Identities=23% Similarity=0.291 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+ ++|+ +|+|.++|+++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 3599999999999999999999999999999999998 6777 9999999999865432 23489999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC-cccccccc
Q 001957 239 GEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMV 316 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (991)
+.+||+||+.++... .+.... . .+....++++++.+|| .+..|..+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~---------------------~-----------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREVG---------------------V-----------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCCC---------------------H-----------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccCC---------------------H-----------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999987531 110000 0 0011235668899999 46666544
Q ss_pred cCcccCC-CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCe
Q 001957 317 GDEMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDD 394 (991)
Q Consensus 317 g~~~~~~-LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~ 394 (991)
.. |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+..++..+ ||+
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~v-tHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVI-THYQRILNYIQPDK 213 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEE-CSSSGGGGTSCCSE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEE-ecCHHHHHHhcCCE
Confidence 46 999999999999999999999999999999999999999999999854 45565555 5667778888 599
Q ss_pred EEEecCCeEEEecCHHH
Q 001957 395 IILLSDGQIVYQGPREL 411 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (991)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=349.16 Aligned_cols=209 Identities=23% Similarity=0.370 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999999865332 356999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.|+.... .. .+ ++.+... ...++.+++.+ ||....+ +
T Consensus 108 tv~enl~~~~~~~--~~-~~---~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-ME---EITAVAM------------------------ESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HH---HHHHHHH------------------------HHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch-HH---HHHHHHH------------------------HHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999864211 00 00 0000000 01124466777 6655444 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|....+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv-tHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI-TQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE-CSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE-eCCHHHHH-hCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999764345666665 55555554 599999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=345.95 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+. +|+ +|+|.++|+++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999994 566 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHHHH-hc---CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccc
Q 001957 239 GEMTVRETLAFSAR-CQ---GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCAD 313 (991)
Q Consensus 239 ~~lTV~E~l~f~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (991)
+.+||.|++.+... .. +.. ..+. .+....++++++.+||+ +..+
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~l~~~gl~~~~~~ 158 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQE--------------------TLDR-----------FDFQDLMEEKIALLKMPEDLLT 158 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCC--------------------CCCH-----------HHHHHHHHHHHHHTTCCTTTTT
T ss_pred ccccHHHHHHHHHHhhhhhhccc--------------------cCCH-----------HHHHHHHHHHHHHcCCChhHhc
Confidence 99999999987642 10 000 0000 00112456789999996 4555
Q ss_pred ccccCcccC-CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-
Q 001957 314 TMVGDEMIR-GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391 (991)
Q Consensus 314 t~vg~~~~~-~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l- 391 (991)
.. +. +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+..++..+
T Consensus 159 ~~-----~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvii-vtHd~~~~~~~~ 231 (267)
T 2zu0_C 159 RS-----VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFII-VTHYQRILDYIK 231 (267)
T ss_dssp SB-----TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEE-ECSSGGGGGTSC
T ss_pred CC-----cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeeCHHHHHhhc
Confidence 43 34 5999999999999999999999999999999999999999999998754 4556555 45666777776
Q ss_pred cCeEEEecCCeEEEecCHHHHHHHHHhcCCC
Q 001957 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFR 422 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (991)
||+|++|++|++++.|+++++.. ++..||.
T Consensus 232 ~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 232 PDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp CSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred CCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 89999999999999999988753 4555554
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=341.44 Aligned_cols=198 Identities=17% Similarity=0.247 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 35999999999999999999999999999999999999998 999982 35699999999888999999
Q ss_pred HHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 245 ETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
||+.|+.... +.... +. ......++++++.+||.+..+.. +..
T Consensus 85 enl~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-------------------PK------------SHDYQVAMQALDYLNLTHLAKRE-----FTS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-------------------CC------------HHHHHHHHHHHHHTTCGGGTTSB-----GGG
T ss_pred HHHHHhhhhhcccccC-------------------CC------------HHHHHHHHHHHHHcCChHHhcCC-----hhh
Confidence 9999975321 10000 00 00012356789999998877654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|+..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT-THQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE-ESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCe-
Confidence 999999999999999999999999999999999999999999999865335665554 567778889999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=341.36 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=164.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEE-EEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++++ |++++|+|||||||||||++|+|++ |+ +|+|.++|+++.....++.++ |++|+..+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 459999999999 9999999999999999999999999 98 999999999875321245789 99998766 8999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
+||+.+....... ....++++++.+||. +..+.. +.
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRK-----LY 127 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSB-----GG
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCC-----hh
Confidence 9999987542100 011245678999998 766644 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC-eEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD-~vilL~~G 401 (991)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++. . |+|+ ++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tvii-vtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGIL-VTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEE-EESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEE-EEcCHHHHHHhcCceEEEEECC
Confidence 899999999999999999999999999999999999999999999863 2 5555 4567778889999 99999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=380.56 Aligned_cols=257 Identities=23% Similarity=0.369 Sum_probs=192.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++ ..+..+....+....+++++|+++.+..
T Consensus 305 ~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 351 (578)
T 4a82_A 305 TQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYND---------------------------- 351 (578)
T ss_dssp HHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSCS----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcCC----------------------------
Confidence 4566677788777765543 1110011111223457999999887521
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
....+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 352 ----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 352 ----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp ----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred ----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.. ....+ ++.+..+..+ .+. ....+++..||.
T Consensus 425 ~l~~-~tv~eni~~~~~----~~~~~---~~~~~~~~~~------------------------~~~--~~~~lp~g~~t~ 470 (578)
T 4a82_A 425 ILFS-DTVKENILLGRP----TATDE---EVVEAAKMAN------------------------AHD--FIMNLPQGYDTE 470 (578)
T ss_dssp CCCS-SBHHHHHGGGCS----SCCHH---HHHHHHHHTT------------------------CHH--HHHTSTTGGGCB
T ss_pred ccCc-ccHHHHHhcCCC----CCCHH---HHHHHHHHhC------------------------cHH--HHHhCcchhhhh
Confidence 7765 499999998631 11111 1111111000 001 133567788999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++. .++|+|++ +|..+.+ +.||+|
T Consensus 471 ~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~i-tH~l~~~-~~~d~i 545 (578)
T 4a82_A 471 VGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AHRLSTI-THADKI 545 (578)
T ss_dssp CCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEE-CSSGGGT-TTCSEE
T ss_pred hcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEE-ecCHHHH-HcCCEE
Confidence 984 556899999999999999999999999999999999999999999999874 35676665 4555555 569999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++.+
T Consensus 546 ~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=345.67 Aligned_cols=202 Identities=23% Similarity=0.327 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45999999999999999999999999999999999999998 999999999986532 2467999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc-------
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (991)
||+||+.|+... ... ...++++++.++|.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999886311 000 0113445677777665443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++.| ....+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH-~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAH-RLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECC-SHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeC-ChHHH-HhCCE
Confidence 333 4567899999999999999999999999999999999999999999999975 3667666654 44455 56999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=341.28 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|++++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3599999999999999999999999999999999999874 8999999999865432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CCcccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (991)
||+||+.|+.. . . .. + + +.+.++.+ ++++..||
T Consensus 108 tv~enl~~~~~-~-~-~~-~---~---------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D-A-TD-E---E---------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T-C-CH-H---H---------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C-C-CH-H---H---------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999998531 0 0 00 0 0 11122222 45566677
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.|+|++. |....+ ..||+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivt-H~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIA-HRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEEC-SSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEc-CCHHHH-HhCCE
Confidence 765 4567899999999999999999999999999999999999999999999974 356666655 445555 46999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=340.23 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=168.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++| . |+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998854332 356999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+... .. . ...++++++.+||.+..+.. +.
T Consensus 90 v~e~l~~~~~~-~~--~------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT--R------------------------------------TELLNDVAGALALDDKLGRS-----TN 125 (249)
T ss_dssp HHHHHHTTCSS-TT--C------------------------------------HHHHHHHHHHTTCGGGTTSB-----GG
T ss_pred HHHHHHHhhcc-CC--c------------------------------------HHHHHHHHHHcCChhHhcCC-----hh
Confidence 99999986311 00 0 01245678999998877654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 323 GISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~-------vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|+++.+. +.|+|+ ++|+...+..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvii-vtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVM-SSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE-ECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEE-EeCCHHHHHHhCCEE
Confidence 899999999999999999999 99999999999999999999999998653 556555 566777888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=379.87 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 35999999999999999999999999999999999999998 9999999999876543 467999999887764 5
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++... ...+ ++.+..+..+ .+. ....|++..||.+|+ ..
T Consensus 432 tv~eni~~~~~~----~~~~---~~~~~~~~~~------------------------~~~--~i~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDD---EIVEAAKIAQ------------------------IHD--FIISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHH---HHHHHHHHTT------------------------CHH--HHHTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCC----CCHH---HHHHHHHHhC------------------------cHH--HHHhcccchhhHhcC-CC
Confidence 999999886421 1111 1111111100 011 123567788999984 56
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.| .... ...||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH-~l~~-~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQ-KIPT-ALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEES-CHHH-HTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec-ChHH-HHhCCEEEEEECC
Confidence 6899999999999999999999999999999999999999999999874 4667766654 4444 4689999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=363.85 Aligned_cols=200 Identities=24% Similarity=0.251 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|+..+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 459999999999999999999999999999999999987 6 9999999999876554 368999999988876 7
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC---
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD--- 318 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (991)
||+||+.+.... . ...++++++.++|.+..+.....
T Consensus 109 tv~enl~~~~~~----~-------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S-------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C-------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C-------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999743210 0 01234467777877655433321
Q ss_pred ---cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 319 ---EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 319 ---~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++ +|+. ++...||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~v-tHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILC-EARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEE-CSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEE-EcCH-HHHHhCCEE
Confidence 2233499999999999999999999999999999999999999999999853 35555554 5554 566779999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999853
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=375.01 Aligned_cols=249 Identities=23% Similarity=0.345 Sum_probs=189.8
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++. .+ .....+.....++++|+++.+..
T Consensus 309 ~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 353 (582)
T 3b5x_A 309 QRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQG---------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 45666777877777654431 00 00111112346999999987621
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 354 ----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 354 ----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred ----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 1134899999999999999999999999999999999999998 9999999999865432 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CC
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GL 308 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL 308 (991)
.+++ .||+||+.++.. .....+. ++++++.+ .+
T Consensus 427 ~l~~-~tv~eni~~~~~---~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~ 466 (582)
T 3b5x_A 427 HLFN-DTIANNIAYAAE---GEYTREQ------------------------------------IEQAARQAHAMEFIENM 466 (582)
T ss_pred cccc-ccHHHHHhccCC---CCCCHHH------------------------------------HHHHHHHCCCHHHHHhC
Confidence 7775 599999998641 0100000 11122222 34
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..||.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|+ ...
T Consensus 467 p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~-~~~- 541 (582)
T 3b5x_A 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHR-LST- 541 (582)
T ss_pred cccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecC-HHH-
Confidence 5567888885 467899999999999999999999999999999999999999999999974 36777776554 434
Q ss_pred HhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
.+.||+|++|++|++++.|+++++.+
T Consensus 542 ~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 542 IEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 45799999999999999999998863
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=375.97 Aligned_cols=202 Identities=23% Similarity=0.373 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 35999999999999999999999999999999999999998 9999999999876543 357999999987776 5
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CCcccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (991)
||+||+.++.. .....+. ++++++.+ .+++..||
T Consensus 432 tv~eni~~~~~---~~~~~~~------------------------------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART---EEYSREQ------------------------------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT---SCCCHHH------------------------------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC---CCCCHHH------------------------------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998641 0110000 11122222 24557789
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+ ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|+ ...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~-~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHR-LSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEEECSC-GGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecc-HHHH-HhCCE
Confidence 9985 467899999999999999999999999999999999999999999999975 36677666554 4444 57999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=329.66 Aligned_cols=188 Identities=19% Similarity=0.276 Sum_probs=156.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ..++.++||+|+..+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999999999876 34577999999998899999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+....+. .. . ...++++++.+||++. +. .+..||
T Consensus 98 nl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~~-----~~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-KK-----KLGELS 135 (214)
T ss_dssp HHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-TS-----BGGGSC
T ss_pred HHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-CC-----ChhhCC
Confidence 99997643221 00 0 1134567899999765 53 456899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiiv-tHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS-SREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEE-ESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999999865 35666665 55667888888888755 3443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=331.42 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=152.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 35999999999999999999999999999999999999998 99999998 3899999875 5789999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC-cccccccccCcccCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 323 (991)
||+.|+.... . +...++ .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~---~~~~~~---~~---------------------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--E---PYYRSV---IQ---------------------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--T---THHHHH---HH---------------------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--H---HHHHHH---HH---------------------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 000000 00 0001223333 223344443 55778
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~---~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+ ++. .+.|+|+++ |....+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivt-H~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVT-HSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEEC-SCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEe-cChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 332 356666665 455555 57999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=375.23 Aligned_cols=255 Identities=23% Similarity=0.341 Sum_probs=191.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++. +..+....+....+++++|+++.+.
T Consensus 321 ~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~y~----------------------------- 365 (598)
T 3qf4_B 321 QMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFSYD----------------------------- 365 (598)
T ss_dssp HHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECCSS-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEECC-----------------------------
Confidence 45666778888777655431 0001111122345799999987641
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
+...+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 366 ----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 366 ----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp ----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred ----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++ ..||+||+.++... ...+ ++.+ +....+ .+.. .-.+++..||.
T Consensus 439 ~lf-~~tv~eni~~~~~~----~~~~---~~~~------------------~~~~~~------~~~~--~~~~~~g~~t~ 484 (598)
T 3qf4_B 439 ILF-STTVKENLKYGNPG----ATDE---EIKE------------------AAKLTH------SDHF--IKHLPEGYETV 484 (598)
T ss_dssp CCC-SSBHHHHHHSSSTT----CCTT---HHHH------------------HTTTTT------CHHH--HHTSTTGGGCB
T ss_pred ccc-cccHHHHHhcCCCC----CCHH---HHHH------------------HHHHhC------CHHH--HHhccccccch
Confidence 766 56999999986321 1101 0100 000000 0111 22466778899
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++. .++|+|++.| ....+ ..||+|
T Consensus 485 ~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH-~l~~~-~~~d~i 559 (598)
T 3qf4_B 485 LTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAH-RLNTI-KNADLI 559 (598)
T ss_dssp CHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESC-CTTHH-HHCSEE
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEec-CHHHH-HcCCEE
Confidence 984 456799999999999999999999999999999999999999999999974 3667776655 44444 559999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++.+
T Consensus 560 ~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 560 IVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEECSSSEEECSCHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=327.78 Aligned_cols=196 Identities=22% Similarity=0.314 Sum_probs=151.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45999999999999999999999999999999999999998 99999998 38999999887774 999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.... . . ......+..+ .+..++. ++...++.++ +.+..|
T Consensus 87 enl~~~~~~~----~-~---~~~~~~~~~~------------------------l~~~~~~--~~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-Y---RYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-H---HHHHHHHHTT------------------------CHHHHTT--STTGGGSCBC-TTCTTS
T ss_pred HHhhccCCcC----h-H---HHHHHHHHhC------------------------cHHHHHh--Cccccccccc-CCCCcC
Confidence 9999863210 0 0 0000000000 0111222 2333455554 346789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.+ +++. .+.|+|+++ |....+ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vt-H~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVT-SKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEEC-CCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEc-CChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999974 5543 356666655 455555 46999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=405.51 Aligned_cols=260 Identities=19% Similarity=0.274 Sum_probs=195.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+.....++|+.++++..++ ..+........+...+|+|+||++.|..
T Consensus 1042 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~~---------------------------- 1088 (1321)
T 4f4c_A 1042 AKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYPE---------------------------- 1088 (1321)
T ss_dssp HHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCTT----------------------------
T ss_pred HHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCCC----------------------------
Confidence 3455567777766655443 1110001111223457999999998621
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
+....||+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|++||+++++... ++.++||+|++
T Consensus 1089 ---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1089 ---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp ---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred ---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence 12345999999999999999999999999999999999999998 9999999999988764 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. +++.||||||.|+..-. ....+.+. +..+.+++ + -.+..|++.+||.
T Consensus 1163 ~-LF~gTIreNI~~gld~~--~~sd~ei~---~Al~~a~l------------------------~--~~I~~Lp~GldT~ 1210 (1321)
T 4f4c_A 1163 T-LFDCSIAENIIYGLDPS--SVTMAQVE---EAARLANI------------------------H--NFIAELPEGFETR 1210 (1321)
T ss_dssp C-CCSEEHHHHHSSSSCTT--TSCHHHHH---HHHHHTTC------------------------H--HHHHTSTTTTCSE
T ss_pred E-eeCccHHHHHhccCCCC--CCCHHHHH---HHHHHhCC------------------------h--HHHHcCcCCCCCE
Confidence 5 45679999998874211 01111111 11111110 0 1134688999999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
||+. ...||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+.. | +..+...||+|
T Consensus 1211 vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IA-H-RLsTi~~aD~I 1285 (1321)
T 4f4c_A 1211 VGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIA-H-RLNTVMNADCI 1285 (1321)
T ss_dssp ETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEEC-S-SSSTTTTCSEE
T ss_pred ecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEec-c-CHHHHHhCCEE
Confidence 9965 45699999999999999999999999999999999999999999999864 356666654 4 44678889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
+||++|+|+++|+|+++++
T Consensus 1286 ~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1286 AVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEESSSSEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999985
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=320.03 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=147.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|+..+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5999999999999999999999999999999999999998 99999998 3899999987777 59999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+. +... . . . ......+..+ .+..++. +....++.++ +.+..||
T Consensus 118 nl~-~~~~---~-~-~---~~~~~~~~~~------------------------l~~~l~~--~~~~~~~~~~-~~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY---D-E-Y---RYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGITLS 161 (290)
T ss_dssp HHH-TTCC---C-H-H---HHHHHHHHTT------------------------CHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc---c-h-H---HHHHHHHHhC------------------------hHHHHHh--ccccccchhc-CccCcCC
Confidence 998 4211 0 0 0 0000000000 0112222 2233455554 3467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.+ +++. .+.|+|++. |....+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivt-Hd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVT-SKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEEC-CCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEe-cCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999974 4442 356666654 555555 569999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=374.37 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+ +..
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL-FDC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCC-CSS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcc-ccc
Confidence 35999999999999999999999999999999999999998 9999999999976543 4679999998754 568
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++...... ..+. +.+..+..+ .+. .+-.+++.+||.||+ ..
T Consensus 1122 ti~eNi~~~~~~~~~--~~~~---i~~~~~~~~------------------------~~~--~i~~l~~gldt~vge-~G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV--SYEE---IVRAAKEAN------------------------IHQ--FIDSLPDKYNTRVGD-KG 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC--CHHH---HHHHHHHHT------------------------CHH--HHSSTTTGGGCBCST-TS
T ss_pred cHHHHHhccCCCCCC--CHHH---HHHHHHHhC------------------------cHH--HHHhCccccccccCC-CC
Confidence 999999986422111 1111 111110000 011 133578889999995 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||+|+.+|++|+|||||+|||+.+...|.+.|++.. .++|+|+. .|..+.+ ..||+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~i-sH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVI-AHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEE-CSCTTGG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEE-ecCHHHH-HcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999998853 45666554 5666666 559999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=320.75 Aligned_cols=191 Identities=28% Similarity=0.315 Sum_probs=159.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 999876 2458999999877788999998
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+..... .. ....++.+|+.+||.+..|.. +..|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRN-----VEDLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCC-----hhhCCH
Confidence 86531100 00 011345678999998777654 458999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV-VEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE-ECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987544555555 56788899999999999986 8899
Q ss_pred EecCHHHHHH
Q 001957 405 YQGPRELVLE 414 (991)
Q Consensus 405 ~~G~~~~~~~ 414 (991)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=317.53 Aligned_cols=191 Identities=27% Similarity=0.311 Sum_probs=158.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 477777888999999999999999999999999999998 999875 2358999998777788999988
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRE-----VNELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCC-----hhhCCH
Confidence 76531100 00 011245578889998766654 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|+|||||+|||..++..+++.|+++++..++|+|+ ++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV-VEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987544556555 56788899999999999986 8999
Q ss_pred EecCHHHHHH
Q 001957 405 YQGPRELVLE 414 (991)
Q Consensus 405 ~~G~~~~~~~ 414 (991)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=312.23 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=156.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999998 99999765 357999998766778999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+..... ... ....++++++.+||.+..|.. +..|||
T Consensus 351 l~~~~~~~-~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-LST------------------------------------SSWFFEEVTKRLNLHRLLESN-----VNDLSG 388 (538)
T ss_dssp HHHHCSST-TCT------------------------------------TSHHHHHTTTTTTGGGCTTSB-----GGGCCH
T ss_pred HHHhhhhc-cch------------------------------------hHHHHHHHHHHcCCHHHhcCC-----hhhCCH
Confidence 98742100 000 011245577888998776654 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++..+.|+ +.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tv-i~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT-FIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEE-EEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999999999999999999999999999999999999999876445554 4567889999999999999986 6677
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=313.04 Aligned_cols=193 Identities=25% Similarity=0.248 Sum_probs=158.9
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~G-----e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (991)
..+|+|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+....+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999998 7852 1 1346899999877777
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||+|++.... .+... ....++.+++.++|.+.+|..
T Consensus 427 ~~tv~e~~~~~~--~~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~---- 464 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQFL------------------------------------NPQFQTDVVKPLRIDDIIDQE---- 464 (608)
T ss_dssp CSBHHHHHHHHC--SSTTT------------------------------------SHHHHHHTHHHHTSTTTSSSB----
T ss_pred CccHHHHHHHHh--hcccc------------------------------------cHHHHHHHHHHcCChhhhcCC----
Confidence 889999875322 11000 001235578899998877654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|+.+++..++|+|++|+
T Consensus 465 -~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii-vtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 465 -VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI-VEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp -SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEECE
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEe
Confidence 56899999999999999999999999999999999999999999999987545656555 5778899999999999998
Q ss_pred C--CeEEEecCHHHHHH
Q 001957 400 D--GQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~--G~iv~~G~~~~~~~ 414 (991)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=310.18 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=135.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCCC----eeeEEEECCee
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHD 218 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL---------------------~~LaG~~~~~~~----~~G~I~~nG~~ 218 (991)
..++|+|||++|++||+++|+||||||||||| ++++|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 888888777521 25677788776
Q ss_pred CCCccccceEEEEecCCC-------------------CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCC
Q 001957 219 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (991)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (991)
.... +++.++||+|... .++.+||+||+.+......... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~~------- 173 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIAR------- 173 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh--------hhHHHH-------
Confidence 5432 2334455554322 2467899999988532210000 000000
Q ss_pred ChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCH
Q 001957 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (991)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~ 356 (991)
.. ..+.... ..+++.+||.+. .|. .+..|||||||||+||+||+.+|+ +|||||||+|||+
T Consensus 174 -------~~---~~~~~~~-~~~l~~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 174 -------LI---LREIRDR-LGFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -------HH---HHHHHHH-HHHHHHcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00 0000111 135888999764 454 446899999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 357 ~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
.++..+++.|+++.+ .+.|+|+ ++|+... ...||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEE-EeCCHHH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999865 4656555 5566655 4569999999 899999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=305.79 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=147.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 359999999999999999999999999999999995 222 3433221 12368999873 67889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
.|++.+ ...+. ...++.+|+.+||+ +..+..+ .
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~-----~ 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPI-----S 547 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBG-----G
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCc-----c
Confidence 999976 11110 01245678999995 5555444 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .++|+|+ ++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEE-EECCHHHHHHhCCEEEEEECCe
Confidence 7999999999999999999999999999999999999999999987 3555555 5678889999999999999999
Q ss_pred EE-EecCHHHHH
Q 001957 403 IV-YQGPRELVL 413 (991)
Q Consensus 403 iv-~~G~~~~~~ 413 (991)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789987764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=301.03 Aligned_cols=182 Identities=22% Similarity=0.278 Sum_probs=144.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCeeCCCc-----cccceEEEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 231 (991)
.+|+||| .|++||+++|+|||||||||||++|+|.++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 4899999 99999999999999999999999999999998 7875 4566554321 112357889
Q ss_pred ecCCCCCCC---CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 SQHDNHIGE---MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 ~Q~d~~~~~---lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+...++. .||.|++..... ...++++|+.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred hhhhhhcchhhhccHHHHHhhhhH-------------------------------------------HHHHHHHHHHcCC
Confidence 886443332 388887743100 0124568899999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..|.. +..|||||||||+||++|+.+|++|||||||++||+.++..+++.|+++.+ .+.|+|+ ++|+..++
T Consensus 149 ~~~~~~~-----~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~-vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLERE-----IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLV-VEHDLAVL 221 (538)
T ss_dssp TTTTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred ChhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHH
Confidence 8776654 468999999999999999999999999999999999999999999999875 4555554 56788899
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..+||+|++|.+|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 9999999999743
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=304.08 Aligned_cols=182 Identities=22% Similarity=0.287 Sum_probs=144.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCeeCCCc-----cccceEEEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 231 (991)
.+|+||| .+++||+++|+|||||||||||++|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999998 8885 4567654321 112357888
Q ss_pred ecCCCCCC---CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 ~Q~d~~~~---~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+....+ ..||+|++..... ...++++|+.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred echhhhchhhccccHHHHhhhhHH-------------------------------------------HHHHHHHHHHcCC
Confidence 88643322 2489998853100 0124567899999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..|..+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+...+
T Consensus 219 ~~~~~~~~-----~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDREL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CchhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EecChHHH
Confidence 88777554 58999999999999999999999999999999999999999999999875 4555555 56778888
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..++|+|++|.++
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 9999999999753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-29 Score=307.64 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=152.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCC----CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH----IGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~----~~~ 240 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|+..+ ...
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~ 754 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------CRIAYIKQHAFAHIESHLD 754 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT--------CCEEEECHHHHHHGGGCTT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc--------cceEeeccchhhhhhcccc
Confidence 46999999999999999999999999999999999999998 999999862 248999997532 235
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHH---HHHHH--H-----------------------------------HcCCC----
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTE---LARRE--K-----------------------------------AAGIK---- 276 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~---~~~~~--~-----------------------------------~~~~~---- 276 (991)
.|++|++.+.... +. ........ +...+ . ..++.
T Consensus 755 ~t~~e~i~~~~q~-g~-d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~ 832 (986)
T 2iw3_A 755 KTPSEYIQWRFQT-GE-DRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSE 832 (986)
T ss_dssp SCHHHHHHHHTTT-SS-CTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTC
T ss_pred cCHHHHHHHHhhc-cc-hhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccc
Confidence 7999999874321 00 00000000 00000 0 00000
Q ss_pred -------------CCCCh-HHHHHH---H-----Hhh---hhhhhHHHHHHHHHcCCccc--ccccccCcccCCCChhHh
Q 001957 277 -------------PDPDI-DVYMKA---I-----ATE---GQEANVITDYYLKVLGLDVC--ADTMVGDEMIRGISGGQK 329 (991)
Q Consensus 277 -------------~~~~~-~~~~~~---~-----~~~---~~~~~~~~~~~l~~lgL~~~--~dt~vg~~~~~~LSGGqr 329 (991)
+.... ..+.+. . ... .......++++|+.+||... .+. .+++||||||
T Consensus 833 ~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQk 907 (986)
T 2iw3_A 833 RWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQK 907 (986)
T ss_dssp EEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHH
T ss_pred cccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHH
Confidence 00000 000000 0 000 01123456789999999742 343 3468999999
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 330 qRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
|||+||++|+.+|++|||||||+|||..+...+++.|+++ ++|+ +.++|+.+++.++||+|++|.+|+++..|+
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tV-IiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGV-IIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEE-EEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEE-EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999998763 4554 445677888999999999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=298.10 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=88.0
Q ss_pred HHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
.+.+..+||... .+ +.+..|||||||||+|||||+.+| ++|||||||+|||+.++..+++.|+++.+ .+.
T Consensus 524 ~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~ 597 (670)
T 3ux8_A 524 LETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 597 (670)
T ss_dssp HHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 345778888642 33 455689999999999999999876 59999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++ +|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 598 tvi~v-tHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVI-EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEE-CCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEE-eCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 66555 5566554 679999999 899999999999884
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=284.94 Aligned_cols=174 Identities=21% Similarity=0.196 Sum_probs=132.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCeeCCCcc-----ccceEEEEecCCCC-
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-----------TYNGHDMDEFV-----PQRTAAYISQHDNH- 237 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~~nG~~~~~~~-----~~~~~~yv~Q~d~~- 237 (991)
.++||+++|+||||||||||||+|+|+++|+ +|+| .++|.++.... ....+..+.|....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4599999999999999999999999999998 8988 67776653210 11223444443222
Q ss_pred --CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 238 --IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 238 --~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
+...||+|++.... ....++++++.+||.+..|..
T Consensus 99 ~~~~~~~v~~~l~~~~-------------------------------------------~~~~~~~~l~~l~l~~~~~~~ 135 (538)
T 3ozx_A 99 SKFLKGTVNEILTKID-------------------------------------------ERGKKDEVKELLNMTNLWNKD 135 (538)
T ss_dssp GTTCCSBHHHHHHHHC-------------------------------------------CSSCHHHHHHHTTCGGGTTSB
T ss_pred hhhccCcHHHHhhcch-------------------------------------------hHHHHHHHHHHcCCchhhcCC
Confidence 22347776543210 001245678999998877755
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.| |+.++|...++..+||+|
T Consensus 136 ~-----~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~t-ii~vsHdl~~~~~~~d~i 207 (538)
T 3ozx_A 136 A-----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKY-VIVVDHDLIVLDYLTDLI 207 (538)
T ss_dssp G-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSE-EEEECSCHHHHHHHCSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCE-EEEEEeChHHHHhhCCEE
Confidence 4 57999999999999999999999999999999999999999999999853 555 555677888999999999
Q ss_pred EEecCCe
Q 001957 396 ILLSDGQ 402 (991)
Q Consensus 396 ilL~~G~ 402 (991)
++|++|.
T Consensus 208 ~vl~~~~ 214 (538)
T 3ozx_A 208 HIIYGES 214 (538)
T ss_dssp EEEEEET
T ss_pred EEecCCc
Confidence 9997653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-27 Score=283.03 Aligned_cols=185 Identities=23% Similarity=0.302 Sum_probs=133.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCccc---cc--eEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFVP---QR--TAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~~---~~--~~~ 229 (991)
..|++++ .+++||+++|+|||||||||||++|+|+++|+ +|+|. +.|.++..... .+ ...
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 68999999999999999999999999999998 88872 23322211000 00 112
Q ss_pred EEecCCCCC------CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHH
Q 001957 230 YISQHDNHI------GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (991)
Q Consensus 230 yv~Q~d~~~------~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (991)
+.+|....+ +..++.+.+... .......+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~-----------------------------------------~~~~~~~~~~~l 206 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR-----------------------------------------MEKSPEDVKRYI 206 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH-----------------------------------------CCSCHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh-----------------------------------------hhhHHHHHHHHH
Confidence 223321110 111233322210 001113466789
Q ss_pred HHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
+.+||.+..|..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.| |+.++|
T Consensus 207 ~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~t-vi~vtH 279 (608)
T 3j16_B 207 KILQLENVLKRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKY-VICVEH 279 (608)
T ss_dssp HHHTCTGGGGSCT-----TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCE-EEEECS
T ss_pred HHcCCcchhCCCh-----HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeC
Confidence 9999988777554 58999999999999999999999999999999999999999999999865 4555 555678
Q ss_pred CCchhHhhcCeEEEecCCe
Q 001957 384 PAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~ 402 (991)
...++..++|+|++|.+|.
T Consensus 280 dl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 280 DLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CHHHHHHHCSEEEEEESCT
T ss_pred CHHHHHHhCCEEEEEeCCc
Confidence 8999999999999998664
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=277.40 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=89.8
Q ss_pred HHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 299 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 299 ~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
+..+|+.+||.... + ++.+.+|||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 785 ~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~ 859 (916)
T 3pih_A 785 TLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGN 859 (916)
T ss_dssp HHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC
Confidence 45678899996421 2 2456789999999999999999865 79999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|+ +.|..+.+ ..||+|++| ++|+|++.|+++++.
T Consensus 860 TVIv-I~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIV-IEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEE-ECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEE-EeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6555 45666555 569999999 899999999999986
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=277.58 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=89.6
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..+|+.+||.. ..+. .+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .+.
T Consensus 826 ~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999976 4443 45689999999999999999764 99999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++ +|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 900 TVIvi-sHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVI-EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEE-CCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEE-cCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 65554 5666665 689999999 789999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=276.05 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Q 001957 298 ITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (991)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~ 373 (991)
.+..+|+.+||... .+ +.+..|||||||||.||++|+.+ |++|||||||+|||..+...+++.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999763 33 34568999999999999999996 799999999999999999999999999875 4
Q ss_pred CceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 374 ~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
+.|+|+ ++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIv-isHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIA-VEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEE-ECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEE-EcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 555555 56677777 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-28 Score=280.43 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=145.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-E-EEECCeeCCCccccceEEEEecCCC---CCCCCCH
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-T-VTYNGHDMDEFVPQRTAAYISQHDN---HIGEMTV 243 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~-I~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (991)
.++|+.+++|++++|+||||||||||+|+|+|++.++ +| + |.+||. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 99 9 999982 3567899999873 4566899
Q ss_pred HHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+||+ |+... .+.... ..+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~~-------------------------------------~~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLL-------------------------------------HNKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCSS-------------------------------------CCBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcchH-------------------------------------HHHHHHHHHhCCCcccc-------hh
Confidence 9999 76432 110000 00122456778876554 35
Q ss_pred CCChhHhHHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc-----hhHh
Q 001957 323 GISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP-----ETYD 390 (991)
Q Consensus 323 ~LSGGqrqRvsia~~--L~~~p~v----LllDE-PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~-----~~~~ 390 (991)
+|||||||||+||++ |+.+|++ ||||| ||+|||.. ...+.+.+++ .+.|+|+++|++.+ ++..
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 799999999999999 9999999 99999 99999998 5555555544 36677777776552 5668
Q ss_pred hcCe-----EEEec-CCeEEEecCHHHHH
Q 001957 391 LFDD-----IILLS-DGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~-----vilL~-~G~iv~~G~~~~~~ 413 (991)
++|+ |++|. +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=252.84 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=148.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----------------------------------CCee
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----------------------------------LKVS 209 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 209 (991)
..+|+++|+.+.+| +++|+|||||||||||++|+++.... ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999997765420 0116
Q ss_pred eEEEECCeeCCCccc----cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-c----hhhhhHHHHHHHHHcCCCCCC-
Q 001957 210 GTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVG-T----RYEMLTELARREKAAGIKPDP- 279 (991)
Q Consensus 210 G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~- 279 (991)
|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.....+.+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999999864222 2347999998765433 5555555432211000 0 000000110000000 00000
Q ss_pred ----------ChHHHHHHHH-----------hhhhhhhHHHHHHHHHcCCcccc----------------cc---cccC-
Q 001957 280 ----------DIDVYMKAIA-----------TEGQEANVITDYYLKVLGLDVCA----------------DT---MVGD- 318 (991)
Q Consensus 280 ----------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 318 (991)
..+.+.+... .........+...++.++++... |. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0011111100 11112233455567777765411 00 1110
Q ss_pred -----cccCC-CChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 319 -----EMIRG-ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 319 -----~~~~~-LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|++++ .+.++|+++|. . ++..
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~-~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHL-A-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSC-H-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCc-H-HHHh
Confidence 11222 6999999999999999999 9999999999999999999999999986 36677776554 3 6678
Q ss_pred hcCeEEEe----cCCeEEEec
Q 001957 391 LFDDIILL----SDGQIVYQG 407 (991)
Q Consensus 391 lfD~vilL----~~G~iv~~G 407 (991)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999998654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=224.61 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=72.6
Q ss_pred cccCCCChhHhHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 319 EMIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+.+.+|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.+ .+.|+|++. |.... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~it-H~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFIT-HDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEE-SCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cchHH-HHhC
Confidence 466789999999999999999 79999999999999999999999999999865 466666655 45544 7889
Q ss_pred CeEEEecCCeEEE
Q 001957 393 DDIILLSDGQIVY 405 (991)
Q Consensus 393 D~vilL~~G~iv~ 405 (991)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-24 Score=223.82 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=97.1
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (991)
+..+.+.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|............++.++|++|+.
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH----
Confidence 333456799996 89999999999999999999999999 887 777732111111112346799999965
Q ss_pred CCCHHHHH-HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETL-AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+||+ .+..... ..+ ... .+ ...++.+++. |
T Consensus 76 ----~enl~~~~~~~~---------~~~------~~~---~~---------------~~~~~~~l~~-g----------- 106 (208)
T 3b85_A 76 ----NEKIDPYLRPLH---------DAL------RDM---VE---------------PEVIPKLMEA-G----------- 106 (208)
T ss_dssp --------CTTTHHHH---------HHH------TTT---SC---------------TTHHHHHHHT-T-----------
T ss_pred ----HHHHHHHHHHHH---------HHH------HHh---cc---------------HHHHHHHHHh-C-----------
Confidence 5666 4421100 000 000 00 0112333332 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+ ||||||+||++|+.+|++|||||||+| ++..+++.|+++ + .+.|+| ++|+..+
T Consensus 107 -----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii--vtHd~~~ 160 (208)
T 3b85_A 107 -----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV--VTGDITQ 160 (208)
T ss_dssp -----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE--EEEC---
T ss_pred -----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE--EECCHHH
Confidence 2 999999999999999999999999999 888999999886 3 455555 4555543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=215.93 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred ccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.|+++. .+.++|++.| . .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH-~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITH-N-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECC-C-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEEC-C-HHHHhhCceE
Confidence 45689999999999999997 6899999999999999999999999999974 3556666554 4 4688899987
Q ss_pred --EEecCCeE-EEecCHHH
Q 001957 396 --ILLSDGQI-VYQGPREL 411 (991)
Q Consensus 396 --ilL~~G~i-v~~G~~~~ 411 (991)
++|.+|.. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-23 Score=241.49 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=135.1
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc
Q 001957 165 LTILKDVSGVIKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge--------------------~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 224 (991)
+.+|+|||+.+++|+ +++|+||||||||||+|+|+|+++++ +|+|.++|.+.+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t~--- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVTM--- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC----C---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecce---
Confidence 468999999999999 99999999999999999999999998 9999999976531
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
.+|++|++ .++.+|+.|++.++.. . ..++++++
T Consensus 110 ---~~~v~q~~-~~~~ltv~D~~g~~~~----~---------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 110 ---ERHPYKHP-NIPNVVFWDLPGIGST----N---------------------------------------FPPDTYLE 142 (413)
T ss_dssp ---CCEEEECS-SCTTEEEEECCCGGGS----S---------------------------------------CCHHHHHH
T ss_pred ---eEEecccc-ccCCeeehHhhcccch----H---------------------------------------HHHHHHHH
Confidence 27899974 5778999988755320 0 01345678
Q ss_pred HcCCcccccccccCcccCCCChh--HhHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-
Q 001957 305 VLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371 (991)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGG--qrqRvsia~~L~~----------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~- 371 (991)
.++|.+.. .. +. |||| ||||+.||++|+. +|++++|||||+|||+.++.++++.|+++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887542 22 23 9999 9999999999999 9999999999999999999999999999852
Q ss_pred ---cc---CceEEEEEecCCch--hHhhcCeEE-EecCC
Q 001957 372 ---IN---SGTAVISLLQPAPE--TYDLFDDII-LLSDG 401 (991)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~lfD~vi-lL~~G 401 (991)
.. ..++|+...|...+ +.+++|+|. .|.+|
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 22 23444444444444 777777774 44433
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-22 Score=203.44 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (991)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ ++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22333221 1111102246789999964 222222 10 00
Q ss_pred hhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHH--
Q 001957 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-- 337 (991)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~-- 337 (991)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0112 23456799999999999996
Q ss_pred ---HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe--cCCchhHhhcCeEEEecCCeEEE
Q 001957 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 338 ---L~~~p~vLllDE--PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~--q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
++.+|++|+||| ||++||+.....+.+.|++ .+.|+|+++| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999998888864 3566888886 788889899998 5566665
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-23 Score=232.71 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|||+.|++|++++|+||||||||||+++|+|++ +|+|. +|++|+..++ ..|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf-~~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFW-LASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGG-GGGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCccccc-cccHH
Confidence 35899999999999999999999999999999999997 57773 4567765444 46888
Q ss_pred H-HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 245 E-TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
| |+.|.... . + .+...++.+ |++..| ...
T Consensus 171 ~~ni~~~~~~-----~-~------------------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-----T-H------------------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-----C-H------------------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-----c-H------------------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 6 77663110 0 0 011223333 444444 357
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||| ||+|+.+|+||| ||+||+.+...|.. + +| ..++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999988887752 1 33 34566789999 9999999
Q ss_pred EEecCHHHHHHHHHh
Q 001957 404 VYQGPRELVLEFFAS 418 (991)
Q Consensus 404 v~~G~~~~~~~~f~~ 418 (991)
++.|+++++..+|.+
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999999666654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-21 Score=196.51 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=54.3
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~----------------t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
..||||||||+||++++.+|++|+|||||+|||+. ...++.+.|+++.+ .|.|+|+++ |..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~vt-H~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVYIL-NSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEEEE-CSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEEEe-CCHH
Confidence 46999999999999999999999999999999999 55888999888765 467777665 5554
Q ss_pred hhH
Q 001957 387 ETY 389 (991)
Q Consensus 387 ~~~ 389 (991)
++.
T Consensus 161 ~~~ 163 (171)
T 4gp7_A 161 EVE 163 (171)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-21 Score=211.31 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=129.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c--cceEEEEecCCC-C
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--QRTAAYISQHDN-H 237 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~--~~~~~yv~Q~d~-~ 237 (991)
++++|+.+++|++++|+||||||||||++.|+|++.++ +|+|.++|.+..... . +..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998875421 1 235899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+|++.++... +. + ..+++.+|+.+..+..
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~-- 201 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSL-- 201 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHH--
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHH--
Confidence 8999999999886421 00 0 0123456776655543
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC--------ch
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PE 387 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~ 387 (991)
+.+|| |||++||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+.+|-+. ..
T Consensus 202 ---~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 202 ---MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp ---HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred ---HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 35699 999999999999999 99999 99999987542 3333334677777665221 22
Q ss_pred hHhhcCeEEEecCCeE
Q 001957 388 TYDLFDDIILLSDGQI 403 (991)
Q Consensus 388 ~~~lfD~vilL~~G~i 403 (991)
+....+.|.++..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345567788887764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=200.41 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=74.5
Q ss_pred CcccC-CCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 318 DEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 318 ~~~~~-~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.|+++. .++|+++|+ ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 44566 79999999999999999 8999999999999999999999999998752 455556664 33
Q ss_pred hHhhcCeEEEecCCeEEEecCHHHH
Q 001957 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 388 ~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-21 Score=207.30 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (991)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+.........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47999999999999999999999998 999999999886544457899999999999999999999987643211000
Q ss_pred hhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHh
Q 001957 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339 (991)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~ 339 (991)
+ . +...+. ....+. ....|||||||||++||+++
T Consensus 81 -~---~---------------------------------i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 81 -E---P---------------------------------IEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp -H---H---------------------------------HHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCE
T ss_pred -H---H---------------------------------HHHHHH----HHHHhh-----hHHhcCcccchhhhhheeee
Confidence 0 0 000010 111122 23479999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
. ++|+|||+.|||+.. ++.++.+.+ . .++|+.++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEec
Confidence 5 999999999999976 344444433 3 666666543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-20 Score=218.41 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=139.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe---eCCCc--------cccceEEEEe
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEF--------VPQRTAAYIS 232 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~~~--------~~~~~~~yv~ 232 (991)
...+|+++ +.|.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999998 999999998 45332 1347899999
Q ss_pred cC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 233 QH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 233 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
|+ +..++.+||.+|+.+.++.... +. .+ ....
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~---------------------------v~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH---------------------------VLLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------------EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------------HHHH
Confidence 95 5667889999999887642100 00 00 0000
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhc--c-Cc----eEEEEEecC
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--N-SG----TAVISLLQP 384 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~--~-~~----t~ii~i~q~ 384 (991)
.| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.|+++.+. . |. .+|+.+.|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 11 134699999 999999 888887 9999999999999999987542 2 32 144555566
Q ss_pred CchhHhhcCeEEEecCCeEEEecCHHHH
Q 001957 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 385 ~~~~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 65 678999999999999999988765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-20 Score=206.10 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=129.3
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---------ccceEEEEecCCC-CC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---------PQRTAAYISQHDN-HI 238 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (991)
+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 5688999999999999999999999999999999887 899999999875421 1245899999987 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
|.+||+|++.++... +. + ..+++.+|+.+..+..
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~--- 258 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSL--- 258 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHH---
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhH---
Confidence 999999999986421 00 0 0123456776655443
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC--------chh
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PET 388 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~~ 388 (991)
+.+|| |||++||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+.+|-+. ..+
T Consensus 259 --~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 259 --MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp --HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred --HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 45699 999999999999999 99999 99999987553 3333334677777665221 123
Q ss_pred HhhcCeEEEecCCeE
Q 001957 389 YDLFDDIILLSDGQI 403 (991)
Q Consensus 389 ~~lfD~vilL~~G~i 403 (991)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345567777777753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-22 Score=206.70 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=112.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+| ..|++|++++|+||||||||||+++|+|+++. +.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 347888 68999999999999999999999999999852 23333332322211 1235689999988778888888
Q ss_pred HHHHHHHHhcC----CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH------HHHcCCcccccc
Q 001957 245 ETLAFSARCQG----VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLDVCADT 314 (991)
Q Consensus 245 E~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt 314 (991)
|++.+.....+ .+... .+..+ .+++. ++.+|+.+.++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~---~~~~~-----------------------------~~~~~~~~~~~l~~~gl~~~~~~ 130 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLA---QPVRA-----------------------------AAATGVPVLIEVDLAGARAIKKT 130 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEH---HHHHH-----------------------------HHHHTCCEEEECCHHHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcH---HHHHH-----------------------------HHHcCCeEEEEeCHHHHHHHHHh
Confidence 87653321111 00000 00000 11111 223344333332
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGL----D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
.++.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+.|+|+ ++|+.+++..
T Consensus 131 -----~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~-vtHdl~~~~~ 193 (207)
T 1znw_A 131 -----MPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVV-VNRRLESACA 193 (207)
T ss_dssp -----CTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEE-ECSSHHHHHH
T ss_pred -----cCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEE-ECCCHHHHHH
Confidence 334566 889999999999999998 7889999999999987544566655 5678999999
Q ss_pred hcCeEEEec
Q 001957 391 LFDDIILLS 399 (991)
Q Consensus 391 lfD~vilL~ 399 (991)
+||+|++|.
T Consensus 194 ~~d~i~~l~ 202 (207)
T 1znw_A 194 ELVSLLVGT 202 (207)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999985
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-22 Score=212.89 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=106.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
..-|+|||+.+++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ++.++|++|+...++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 776543222 3567899997655544
Q ss_pred CC-HHHHHHH---HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 241 MT-VRETLAF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 241 lT-V~E~l~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
++ +.+++.+ ...+.+.. ...++++++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~~--------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGTL--------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEEE--------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCCCc--------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 32 1111111 11111100 0012223333221 111
Q ss_pred cCcccCCCChhHhHHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 317 GDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsi-----a~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .+ +.| ...
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~ 184 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLN 184 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSC
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccC
Confidence 1 4699999999999 88999999999999999999999999999999876432 23 122 245
Q ss_pred cCeEEEecC
Q 001957 392 FDDIILLSD 400 (991)
Q Consensus 392 fD~vilL~~ 400 (991)
||.|+++++
T Consensus 185 ~d~iiv~~~ 193 (218)
T 1z6g_A 185 FNLSIINDD 193 (218)
T ss_dssp CSEEEECSS
T ss_pred CCEEEECCC
Confidence 777777653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-19 Score=197.53 Aligned_cols=133 Identities=13% Similarity=0.172 Sum_probs=101.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+ +.... + + .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~~-------~---~-~------- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVFK-------H---H-K------- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCCS-------S---C-S-------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccccc-------c---c-h-------
Confidence 799999999999999999999999999999999999998 9999999864 11100 0 0 0
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+. .+ .+ .+ |
T Consensus 217 -----~~----------------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 217 -----NY----------------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp -----SE----------------------------------------------------EE-------EE-----CB--T
T ss_pred -----hE----------------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 01 8
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||+||++||++|..+|++|++||||+. ++.+.|+.+.. .+.|+++++|.+. +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766542 3345666666543 8889999999988753
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-16 Score=175.87 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=66.5
Q ss_pred cccCCCChhHhH------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 319 EMIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 319 ~~~~~LSGGqrq------Rvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
..+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.. .+.++|++. |+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~s-H~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVS-HD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEE-SC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEE-Ch-HHHHHhC
Confidence 456789999999 67778888899999999999999999999999999999765 456666655 44 5788999
Q ss_pred CeEEEec
Q 001957 393 DDIILLS 399 (991)
Q Consensus 393 D~vilL~ 399 (991)
|++++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-18 Score=192.07 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=114.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-EEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
...+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999998775 57 66554433221111111111122111 11
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+.+++.... +.. .+....++.+++..++. .. +.+.
T Consensus 94 ~~~~l~~~~--------------~~~------------------------~~~~~~~~~~l~~~~l~-i~------~~~~ 128 (296)
T 1cr0_A 94 QSDSLKREI--------------IEN------------------------GKFDQWFDELFGNDTFH-LY------DSFA 128 (296)
T ss_dssp GCHHHHHHH--------------HHH------------------------THHHHHHHHHHSSSCEE-EE------CCCC
T ss_pred hccccccCC--------------CCH------------------------HHHHHHHHHHhccCCEE-EE------CCCC
Confidence 112222110 000 00111223333222221 11 1224
Q ss_pred CCChhH-hHHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHhhccCceEEEEEecC-Cc-------
Q 001957 323 GISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQP-AP------- 386 (991)
Q Consensus 323 ~LSGGq-rqRvsia~~L~~~p~vLllDEPTs---G---LD~-~t~~~i~~~L~~l~~~~~~t~ii~i~q~-~~------- 386 (991)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 588898 66666 999999999999999999 5 555 6678899999999876677777765553 23
Q ss_pred -------------hhHhhcCeEEEecCCeE
Q 001957 387 -------------ETYDLFDDIILLSDGQI 403 (991)
Q Consensus 387 -------------~~~~lfD~vilL~~G~i 403 (991)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-19 Score=200.69 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=96.0
Q ss_pred ceEEE-EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGV-IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~-i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+|.. +++|++++|+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++|++.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 44443 7899999999999999999999999999875 332 458999999888888 9999986
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+... .+.... .+ ...+.+.|+.++ ....+.. +..|||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYAC-----APVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEE-----EEEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCC-----cccCChhh
Confidence 5321 111000 00 012344566666 3333333 35799999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~ 356 (991)
+||+++|++++.+|+|||||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=195.69 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=66.7
Q ss_pred ccCCC-ChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 320 MIRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 320 ~~~~L-SGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.+..| ||||||||+||++|+.+| ++|||||||+|||..++..|.+.|+++++ +.++|+++ |.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~it-H~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVT-HLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEEC-CCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEe-cCH-HHHHhCCEEE
Confidence 45667 999999999999999999 99999999999999999999999999864 56666655 443 4667899999
Q ss_pred EecCC
Q 001957 397 LLSDG 401 (991)
Q Consensus 397 lL~~G 401 (991)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-18 Score=184.64 Aligned_cols=177 Identities=15% Similarity=0.059 Sum_probs=103.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+||||.+++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 356999999999999999999999999999999999976 222233 1356789999975 7788999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.|++.+.......... +. .+.+ .+.+.|+.+ .+..+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~-~~----------------~~~~---------------~~~~~L~~l--~~~~~~-----~~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-DA----------------FDND---------------LMHRTLKNI--VEGKTV-----EVPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG-GG----------------BCHH---------------HHHHHHHHH--HTTCCE-----EECC
T ss_pred hHhhhhhccCCCCCCc-cc----------------ccHH---------------HHHHHHHHH--HCCCCe-----eccc
Confidence 9999875432211100 00 0000 111223322 233333 3458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh-HhhcCeEEEecCCe
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET-YDLFDDIILLSDGQ 402 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~-~~lfD~vilL~~G~ 402 (991)
+|+||+||+.+ ++++.+|++++||||...+|.. +.++ .+.+++++.|. ...+ ..+++++ .+|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHHHHHHHHHHH---HcCC
Confidence 99999999987 5788899999999998888763 2222 24566666543 2333 3344444 5564
Q ss_pred EEEecCHHHHHHH
Q 001957 403 IVYQGPRELVLEF 415 (991)
Q Consensus 403 iv~~G~~~~~~~~ 415 (991)
+.+++.+.
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 45555543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=173.03 Aligned_cols=112 Identities=19% Similarity=0.316 Sum_probs=89.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.|+... ....+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 56889998885221 13578999999999999999999999999999999999865 46899999998864
Q ss_pred ccc------c-cceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHH
Q 001957 936 QET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 978 (991)
Q Consensus 936 ~~t------f-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~ 978 (991)
..+ + ++.+|||+|+..+.|.+||+|++.|...++.....+.++
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 120 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence 211 2 345999999999999999999999987766433444443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-17 Score=201.85 Aligned_cols=169 Identities=22% Similarity=0.322 Sum_probs=121.4
Q ss_pred HHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 193 TLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 193 TLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
|...|..+++.+. .|+|+++|+++.+ +..+||.|++.|.....-...........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~------ 437 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGEL------ 437 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHH------
T ss_pred cchhcccccCChH---hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhh------
Confidence 3445666777777 8999999998743 34578999998854321110000000000
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCc--EeEEeC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDE 349 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDE 349 (991)
.+ +.. .....|..+||... .| +.+.+|||||||||.||++|+.+|+ +|+|||
T Consensus 438 ------------~~-------~~~-~~~~~L~~vgL~~l~l~-----r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDE 492 (916)
T 3pih_A 438 ------------LK-------EIE-KRLEFLVDVGLEYLTLS-----RSATTLSGGESQRIRLATQIGSGLTGVIYVLDE 492 (916)
T ss_dssp ------------HH-------HHH-HHHHHHHTTTCTTCBTT-----SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ------------HH-------HHH-HHHHHHHHcCCcccccc-----CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 00 001 12346778899754 34 4456899999999999999999877 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 350 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 350 PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
||+|||+.....+++.|+++.+ .|.|+|+ ++|+...+ ..+|+|++| ++|++++.|+++++..
T Consensus 493 PT~gLD~~~~~~l~~~L~~L~~-~G~Tviv-VtHd~~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 493 PTIGLHPRDTERLIKTLKKLRD-LGNTVIV-VEHDEEVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TTTTCCGGGHHHHHHHHHHTTT-TTCEEEE-ECCCHHHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999999999999999864 4666655 45666554 569999999 8999999999998864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=199.27 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=71.6
Q ss_pred CCCChhHhHHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 322 RGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L--~~~p~vLllDEPTsGLD~~t~~~i-~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+..+.++|+++| . .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH-~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH-F-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEES-C-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcC-c-HHHHHHhccccee
Confidence 47899999999999888 999999999999999999999888 56666665434667777655 4 4677899999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998877654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=178.86 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=87.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998872 2468999999999999999999999999999999999876 4589999999875
Q ss_pred ----C-cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 ----K-QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ----~-~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ....+|.+|||+|+..++|++||+|++.|..+.|.
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~ 109 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK 109 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC
Confidence 2 12356889999999999999999999999876653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=178.91 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=87.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377899998872 2468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
.. ...+|.+|||.|+..++|++||+|++.|..+++.
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 42 2346789999999999999999999999887763
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=188.35 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=113.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (991)
++.+++|++++|+||||||||||++.|+|...+. |+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5699999999999999999999999999987653 32 12445566431 01111110
Q ss_pred HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHH
Q 001957 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (991)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (991)
+ .+ + +. +. +...|+....+ ..+..|||||+||
T Consensus 330 ~-~g-------------------~----~~------------------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S-WG-------------------M----DF------------------EE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp T-TS-------------------C----CH------------------HH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred H-cC-------------------C----CH------------------HH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 0 00 0 00 11 12345544443 3456899999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHhhccCceEEEEEecCC---------chhHhhcCeEEE
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCLRQNIHINSGTAVISLLQPA---------PETYDLFDDIIL 397 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~-----t~~~i~~~L~~l~~~~~~t~ii~i~q~~---------~~~~~lfD~vil 397 (991)
+.+|+++..+|++|++| ||+|||.. .+..+.+.++.+.+ .+.|+|++.|... ..+..++|+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 89999999988754 5777777766551 567789999999
Q ss_pred ecCCe
Q 001957 398 LSDGQ 402 (991)
Q Consensus 398 L~~G~ 402 (991)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=176.98 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=89.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.|.... ....+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 24 mi~v~~ls~~y~~~~---------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECSS---------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCCC---------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999998885321 23678999999999999999999999999999999999865 4589999999986
Q ss_pred Ccc------cccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .++|.+|||+|+..++|.+||+|++.|.+.++.
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 521 246789999999999999999999999887653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-16 Score=170.57 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378999998872 2468999999999999999999999999999999999865 4589999999886
Q ss_pred Cc----------------ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~----------------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ..+++.+|||+|+..++|.+||+|++.|.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 118 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 118 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhH
Confidence 41 135677999999998999999999999964
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-17 Score=184.45 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=125.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----------cccceEEEEec
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------VPQRTAAYISQ 233 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----------~~~~~~~yv~Q 233 (991)
.+.+|+++ +.|.+|++++|+||||||||||+++|+|..+++ .|.|.++|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999999752111 12356778887
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
.+. ...+.+.-.... +. ..+ .+...+ .|
T Consensus 134 ~~~-----~~~~r~~~~~~~------------~~------------------------------~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA------------TT------------------------------IAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH------------HH------------------------------HHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH------------HH------------------------------HHH-HHHhcc----cc
Confidence 542 222222211100 00 000 011111 11
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-ccCce----EEEEEecCCchh
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGT----AVISLLQPAPET 388 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~-~~~~t----~ii~i~q~~~~~ 388 (991)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|.. +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 111012345799999 899999 577776 999999999999999998753 23431 4455556665
Q ss_pred HhhcCeEEEecCCeEEEecCHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
..+||++++|.+|+++.+|+.+++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 678999999999999999988765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=165.85 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=84.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67899998772 1468999999999999999999999999999999999865 45899999999864
Q ss_pred cc------ccc-ceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~-r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. .++ +.+||++|+..+.|.+||+|++.|.+.++
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 21 133 67899999998999999999999987654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=164.45 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=85.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.+. + .+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 478899998762 2 57999999999999999999999999999999999865 4589999999886
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .+++.+||++|+..+.+.+||+|+|.|.+.++
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 106 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY 106 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence 5 46788999999998899999999999987654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=169.95 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=83.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378999998872 2468999999999999999999999999999999999865 4589999999886
Q ss_pred C-----cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 K-----QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
. ...+++.+|||+|+...+|.+||+|++.|.+
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 3 1235677999999998999999999999965
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=169.45 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=86.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478999998872 2468999999999999999999999999999999999865 4589999999986
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..+++.+|||+|+..+.|.+||+|+|.|.+.++
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence 42 235678999999998999999999999977654
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=176.80 Aligned_cols=99 Identities=28% Similarity=0.341 Sum_probs=85.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67889998772 2468999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|..+++
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 234678999999999999999999999987655
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=176.77 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=85.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67889998772 2468999999999999999999999999999999999876 46899999998753
Q ss_pred c-------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 2 223678999999999999999999999987765
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=175.42 Aligned_cols=99 Identities=27% Similarity=0.401 Sum_probs=85.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988762 2357999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 224578999999999999999999999987665
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-16 Score=176.98 Aligned_cols=99 Identities=25% Similarity=0.249 Sum_probs=85.5
Q ss_pred eeecceEEEeeCchhhhhcccccccee--eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~--lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
+.++||++.+. +.. +|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67889998772 123 7999999999999999999999999999999999876 468999999987
Q ss_pred CCc------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 934 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 934 ~~~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 532 245788999999999999999999999987655
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=175.47 Aligned_cols=101 Identities=27% Similarity=0.349 Sum_probs=87.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++ . +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~--g----------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP--G----------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT--T----------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc--C----------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 478899998762 1 2357999999999999999999999999999999999876 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 42 235788999999999999999999999987765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-16 Score=190.41 Aligned_cols=104 Identities=21% Similarity=0.306 Sum_probs=87.5
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||... .|. .+.+|||||||||.||++|..+| ++|+|||||+|||+.....+++.|+++.. .|.|+|
T Consensus 487 ~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 5889999753 454 45689999999999999999984 99999999999999999999999999854 566655
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++ .|..++ ...+|+|++| .+|++++.|+++++.
T Consensus 561 vV-eHdl~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VV-EHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EE-CCCHHH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EE-ecCHHH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 54 566655 5679999999 799999999998764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=165.87 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=82.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 7 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 78899998872 2457999999999999999999999999999999999865 45899999999864
Q ss_pred cc---c-ccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ~~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. . .++.+|||+|+..+++.+||+|++.|.+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 21 1 2345999999998899999999999975
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=175.77 Aligned_cols=99 Identities=21% Similarity=0.320 Sum_probs=79.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78999998872 2467999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 234678999999999999999999999986654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-17 Score=170.39 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=91.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC---C-CeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~---~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
+-+++|++++|+||||||||||+++|+|...+. + .-.|.|.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 469999999999999999999999999954431 0 01346666654310 01123333333222222 3333332
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1223332
Q ss_pred h-HHHHHHHHHh-------cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhccCceEEEEEecCCch-
Q 001957 329 K-KRVTTGEMMV-------GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 387 (991)
Q Consensus 329 r-qRvsia~~L~-------~~p~vLllDEPTsGLD~~-------t-----~~~i~~~L~~l~~~~~~t~ii~i~q~~~~- 387 (991)
+ +.+..++.++ .+|+++++||||++||+. . ..++++.|+++++..+.|+|++ +|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v-tH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT-NQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE-EECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE-eecccCc
Confidence 2 2234444443 489999999999999983 1 2378888888877556666665 553333
Q ss_pred ---hHhhcCeEEEecCCe
Q 001957 388 ---TYDLFDDIILLSDGQ 402 (991)
Q Consensus 388 ---~~~lfD~vilL~~G~ 402 (991)
+...+|++++|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 788999999998753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=169.10 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=84.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.|+- +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 7 ~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 4789999988731 2348999999999999999999999999999999999865 4589999999986
Q ss_pred C-----cccccceeeEEeccC-CCCCCCCHHHHHHhhhhcc
Q 001957 935 K-----QETFARISGYCEQND-IHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~-----~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~LR 969 (991)
. ...+++.+|||+|+. ......||+|++.|.+..+
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~ 113 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM 113 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc
Confidence 3 124678899999984 3445799999999988754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-16 Score=166.69 Aligned_cols=100 Identities=24% Similarity=0.299 Sum_probs=86.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..+|++|.+. ...+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899998872 2468999999999999999999999999999999999865 3589999999986
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+||++|+..+.+.+||+|+|.|.+..+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 42 245677999999998888999999999987654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=165.53 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=83.9
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.... ...+.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67889998873100 001468999999999999999999999999999999999865 45899999999865
Q ss_pred cccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 QETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
...+++.+||++|+. ...+..||+|++.|.+..
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 334677899999984 567789999999997644
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-16 Score=166.65 Aligned_cols=99 Identities=23% Similarity=0.260 Sum_probs=84.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378999998872 2468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc----ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 935 ~~----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
.. ..+++.+|||+|+..++|.+||+|++.|.+..
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 42 12456799999999889999999999997654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-18 Score=201.11 Aligned_cols=169 Identities=15% Similarity=0.142 Sum_probs=113.1
Q ss_pred cceeeeceEE-EEeCCeEEEEEcCCCCcHHHHHHH--HhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCC
Q 001957 164 HLTILKDVSG-VIKPGRLTLLLGPPSSGKTTLLLA--LAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHI 238 (991)
Q Consensus 164 ~~~iL~~vs~-~i~~Ge~~allGpsGsGKSTLL~~--LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~ 238 (991)
...+|++||+ .+++|++++|+||||||||||+++ ++|.++|+ +|.|.++|.+.... ...+.++|++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4669999999 999999999999999999999999 78999877 89999999873211 1124578888863211
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ ++.+ .. .... .+. .++++.++|.+..+
T Consensus 101 ~------~l~~-~~---~~~~-------------------~~~------------------~~~l~~~~l~~~~~----- 128 (525)
T 1tf7_A 101 G------KLFI-LD---ASPD-------------------PEG------------------QEVVGGFDLSALIE----- 128 (525)
T ss_dssp T------SEEE-EE---CCCC-------------------SSC------------------CSCCSSHHHHHHHH-----
T ss_pred C------cEEE-Ee---cCcc-------------------cch------------------hhhhcccCHHHHHH-----
Confidence 1 1100 00 0000 000 00111222222222
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC-----CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh-----
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEIST-----GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET----- 388 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs-----GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~----- 388 (991)
+.++.||||| |++++|||||+ +||+..+.++.+.++.+.+ .+.|+|++.| ...++
T Consensus 129 ~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH-~~~~~~~~~~ 193 (525)
T 1tf7_A 129 RINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTE-RIEEYGPIAR 193 (525)
T ss_dssp HHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEE-CSSSSSCSST
T ss_pred HHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEec-CCCCcccccc
Confidence 2234577776 56889999998 4699999999999999865 5777777655 45553
Q ss_pred ----HhhcCeEEEecCCe
Q 001957 389 ----YDLFDDIILLSDGQ 402 (991)
Q Consensus 389 ----~~lfD~vilL~~G~ 402 (991)
..+||+|++|++|+
T Consensus 194 ~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 194 YGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TSCHHHHCSEEEEEEEEC
T ss_pred ccceeeeeeEEEEEEEEc
Confidence 45699999999844
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-16 Score=172.31 Aligned_cols=100 Identities=27% Similarity=0.331 Sum_probs=85.2
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.|+||+|.|+- ...+|+|||+.++||+++||+|+||||||||+++|+|--. ..+|+|++||
T Consensus 50 ~~~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G 115 (306)
T 3nh6_A 50 QKGRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDG 115 (306)
T ss_dssp SSCCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECC
Confidence 3457999999998841 2357999999999999999999999999999999999765 4589999999
Q ss_pred ccCCc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 932 ~~~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+... ..+++.+|||+|+..+++ .||+|+|.|..
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~ 152 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGR 152 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTS
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhc
Confidence 98653 346788999999987774 59999999864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=186.66 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred CCCCcHHHHHHHHhcC---------cCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 001957 186 PPSSGKTTLLLALAGK---------LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (991)
Q Consensus 186 psGsGKSTLL~~LaG~---------~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (991)
.+..||++|.+.+... +.+. +|+|+++|+++.+. ..++|.|.+.|.......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~---~~~v~~~G~~I~~~----------------~~~~v~e~~~~~~~~~~~ 330 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQE---ALNVTFAGLDITEL----------------SRLPLARVSELLRPYAEE 330 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTT---TTTCBBTTBCHHHH----------------HHSBHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHH---HhhcccCCccHHHH----------------hhcCHHHHHHHHHhhhhh
Confidence 3556899999887763 3344 78889988876542 135677777766543210
Q ss_pred CchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHH
Q 001957 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTG 335 (991)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia 335 (991)
... +.. . +..+ ..+.......+ ..+....++ .|..+||... .| +....|||||||||.||
T Consensus 331 ~~~--~~~-----~-~~~~--~~~~~~i~~~i---~~ei~~rl~-~L~~vGL~~l~l~-----r~~~tLSGGe~QRV~LA 391 (842)
T 2vf7_A 331 REP--GHA-----E-RVKN--RPEQAIALQRM---AADLVKRLD-VLLHLGLGYLGLD-----RSTPTLSPGELQRLRLA 391 (842)
T ss_dssp CSS--CST-----T-SSSS--CSSHHHHHHHH---HHHHHHHHH-HHHHTTCTTSBTT-----CBGGGSCHHHHHHHHHH
T ss_pred hhh--ccc-----c-hhhc--chhhHHHHHHH---HHHHHHHHH-HHHhCCCCcCCcc-----CCcCcCCHHHHHHHHHH
Confidence 000 000 0 0000 00000000000 112223344 5789999754 45 44568999999999999
Q ss_pred HHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEec
Q 001957 336 EMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQG 407 (991)
Q Consensus 336 ~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G 407 (991)
++|..+| ++|+|||||+|||+.....+.+.|+++.. .+.|+|+ +.|..+ +.+.+|+|++| .+|++++.|
T Consensus 392 ~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIv-VeHdl~-~l~~aD~ii~lgpgaG~~~G~iv~~g 468 (842)
T 2vf7_A 392 TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFV-VEHDLD-VIRRADWLVDVGPEAGEKGGEILYSG 468 (842)
T ss_dssp HHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEE-ECCCHH-HHTTCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEE-EcCCHH-HHHhCCEEEEeCCCcccCCCEEEEec
Confidence 9999998 59999999999999999999999999864 5656555 456665 66789999999 799999999
Q ss_pred CHHHHH
Q 001957 408 PRELVL 413 (991)
Q Consensus 408 ~~~~~~ 413 (991)
+++++.
T Consensus 469 ~~~~~~ 474 (842)
T 2vf7_A 469 PPEGLK 474 (842)
T ss_dssp CGGGGG
T ss_pred CHHHHH
Confidence 998864
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=147.56 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=70.3
Q ss_pred CcccCCCChhHhHHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 318 DEMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia------~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
+..+..|||||||||+|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ . ++.++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~-~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD-E-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESC-G-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEECh-H-HHHHh
Confidence 456789999999999876 899999999999999999999999999999999764 46677766555 4 67899
Q ss_pred cCeEEEe--cCCeE
Q 001957 392 FDDIILL--SDGQI 403 (991)
Q Consensus 392 fD~vilL--~~G~i 403 (991)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-16 Score=173.05 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=84.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +. +|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 46788887762 13 7999999999999999999999999999999999876 46899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 2 234678999999999999999999999987665
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-17 Score=171.14 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=105.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (991)
|++++|+||||||||||+++|+|+++ + +| |.++|.+..+.. ..+.++|++|+. .... +++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999988 6 89 999998775432 246789999963 1111 111 0000
Q ss_pred CchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccCCCChhHhHHHHH-
Q 001957 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTT- 334 (991)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsi- 334 (991)
++.+ ...+..+| ++...+|||||+++..
T Consensus 66 -------------------------------------------------~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 -------------------------------------------------LEPPPGKRECRVG-QYVVDLTSFEQLALPVL 95 (189)
T ss_dssp -------------------------------------------------CCCCSSSCCEESS-SSEECHHHHHTTTTTTT
T ss_pred -------------------------------------------------ccCCccccccccc-eEEEcchHHHHHHHHHH
Confidence 0000 00112344 2345699999999844
Q ss_pred HH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHhhccCceEEE---EEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 335 GE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 335 a~---~L~~~p~vLllDE--PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii---~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
++ |+..+|++|+||| |+..+|......+.+.| +. ..++|+ +++|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l----~~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL----ST-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH----HC-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH----hC-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 89889887555544444 32 334443 3336553 457788888889999875
Q ss_pred c
Q 001957 407 G 407 (991)
Q Consensus 407 G 407 (991)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-16 Score=167.89 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=95.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+++| +++|++++|+|||||||||||++|+|+++++ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998762 169999998775321 11111222220
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 012210 112
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|++||++|..+|+++++|||| |..+...+++ . +. .+.++++++|. . ++...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~-~-~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHT-N-TAIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECC-S-SHHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCc-c-hHHHHHHHHhhhcC
Confidence 899999999999999999999 9888665543 3 23 46666666554 4 37789999998864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-15 Score=186.32 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=100.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..|++|||+.+++|++++|+|||||||||||++|++..-.. ..| . +.+.. .+.+..-+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998653110 001 0 01111 01111112222222221
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 122468
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHhhccCceEEEEEecCCchhHhhcCeEEE-ecCCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~-~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil-L~~G~ 402 (991)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.++|+++| .. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH-~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH-YP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS-CG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC-cH-HHHHHHhhcccceEEEE
Confidence 9999999999988 8999999999999999999999987 6677765545667766654 43 56677776431 33444
Q ss_pred EEE
Q 001957 403 IVY 405 (991)
Q Consensus 403 iv~ 405 (991)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-16 Score=177.37 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=80.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK-LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
.+.+++++++.| +|+||||||||||++.|.|. ..+. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 88 8888877643222355789999888888899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||..++..... .+. . ..+++++.+. .+ .+.+
T Consensus 80 v~Dt~g~~~~~~~-------------~e~---~--------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC---F--------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC---------------------------C--------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-------------HHH---H--------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999887542210 000 0 0011111111 11 3346
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
++|||||||+.+|++++ ++++||||+ |||+... +.++++.. .-..+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 79999999999888875 999999998 5999763 55555543 2234444445543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=170.13 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=64.7
Q ss_pred cCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.. .+.++|++.|+ ......||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999998753 35566665544 56788999999
Q ss_pred Eec
Q 001957 397 LLS 399 (991)
Q Consensus 397 lL~ 399 (991)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-15 Score=163.95 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=82.2
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 18 ~~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g 82 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFG 82 (279)
T ss_dssp -CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECC
Confidence 334589999998872 2468999999999999999999999999999999999875 4589999999
Q ss_pred ccCC-----cccccceeeEEeccCCC--CCCCCHHHHHHhhh
Q 001957 932 YPKK-----QETFARISGYCEQNDIH--SPFVTIYESLLFSA 966 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih--~p~~TVrEsL~fsA 966 (991)
.+.. ...+++.+||++|+... .+.+||+|+|.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 8764 12356789999998653 34679999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-16 Score=197.83 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=109.6
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~-------Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~ 237 (991)
..|++||++.+++ |++++|+|||||||||||++| |++.+- .+..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------------------aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------------------AQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------------------HTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------------------hheeEEeccCcC-
Confidence 4589999999987 999999999999999999999 986531 122348998642
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
.+||.|++.. + +|+.+..+
T Consensus 828 --~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~---- 846 (1022)
T 2o8b_B 828 --RLTPIDRVFT--R-----------------------------------------------------LGASDRIM---- 846 (1022)
T ss_dssp --EECCCSBEEE--E-----------------------------------------------------CC----------
T ss_pred --CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh----
Confidence 4555554411 0 01110000
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~-~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.....+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+.+..+.++|++ +|..+.+..++|++.
T Consensus 847 -~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~-TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 847 -SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS-THYHSLVEDYSQNVA 923 (1022)
T ss_dssp ----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE-CCCHHHHHHTSSCSS
T ss_pred -hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHHhCCcce
Confidence 01134666665 49999999999999999999999999885 446788888765335565555 566778888899998
Q ss_pred EecCCeEE--EecCHHH
Q 001957 397 LLSDGQIV--YQGPREL 411 (991)
Q Consensus 397 lL~~G~iv--~~G~~~~ 411 (991)
++ +|++. +.|++++
T Consensus 924 v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 924 VR-LGHMACMVENECED 939 (1022)
T ss_dssp EE-EEEEEEC-------
T ss_pred ee-cCeEEEEEecCccc
Confidence 87 58888 5565543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-15 Score=160.22 Aligned_cols=99 Identities=29% Similarity=0.280 Sum_probs=80.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|+|||||||||++|+|-...-..+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67899998872 24579999999999999999999999999999999996211246899999999864
Q ss_pred cc---cc-cceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~---tf-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.. .. ++.+||++|+..++|.+||+|++.|.+.
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQ 106 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHH
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHH
Confidence 21 12 3458999999999999999999998653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-17 Score=171.37 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=106.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCHHHHHHHHHH
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFSAR 252 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (991)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 478999987765 56899988766421
Q ss_pred hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH----
Q 001957 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ---- 328 (991)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (991)
. ++. . ....+.+.++.+++.+..+. ....+|+||
T Consensus 61 ~--~~~-~----------------------------------~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 H--PDA-F----------------------------------DLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp S--GGG-B----------------------------------CHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred C--hhh-h----------------------------------hHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 1 000 0 00112344566666554433 245689996
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsG-------LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
+||++++++++.+|+++++||||++ ||+.....+.+.+++..+..+.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999987644456676665554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=163.88 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=82.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+.-. +++.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58899999887321 12457999999999999999999999999999999999865 4589999999886
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ..+++.+|||+|+...++ .||+|+|.|.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 42 235677999999987777 59999999864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-15 Score=160.64 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=82.5
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..++++||++.++ . ++..+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+
T Consensus 6 ~~~~~~~l~~~y~--~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK--P---------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS--T---------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC--C---------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3578999998873 1 12468999999999999999999999999999999999865 458999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
... ..+++.+|||+|+...++ .||+|+|.|.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 642 335678999999987776 5999999985
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-16 Score=191.72 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=111.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCC------ccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
++|+|||||||||||++|+|+..| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 9999999988521 12346789999999999999999999886532
Q ss_pred cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHH
Q 001957 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (991)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11122
Q ss_pred HHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh----Hhhc--------CeE
Q 001957 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET----YDLF--------DDI 395 (991)
Q Consensus 334 ia~~L~~~p~vLllDEP------TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~----~~lf--------D~v 395 (991)
++......|+++++||| |+|||+....++.+.++++.+...+.+++.++|..+.+ .+++ ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223457999999999 99999999999999999976655566666667665422 2222 357
Q ss_pred EEecCCeEEEecCHHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLEF 415 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~ 415 (991)
+|+.++.++..|+.+++.+.
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCC
T ss_pred EEecchhhcCcccHHHHHHH
Confidence 88999988888876655443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-16 Score=177.91 Aligned_cols=168 Identities=19% Similarity=0.191 Sum_probs=99.9
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCC-CCeeeE-EEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPT-LKVSGT-VTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 167 iL~~v-s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~-~~~~G~-I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.|+++ +|.+++|++++|+||||||||||++.|++.. +|+ +...|+ |++++.+. + ..+.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45555 5899999999999999999999999999987 443 111367 78887653 1 12345555665433322
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
++.||+.+...
T Consensus 195 ~v~~ni~~~~~--------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 EVLKHIYVARA--------------------------------------------------------------------- 205 (349)
T ss_dssp HHGGGEEEEEC---------------------------------------------------------------------
T ss_pred HHhhCEEEEec---------------------------------------------------------------------
Confidence 44444333210
Q ss_pred CCCChhHhHHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHhhccCceEEEEEe
Q 001957 322 RGISGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~-------~~p~vLllDEPTsGLD~~t------------~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
--|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+.|+|++ +
T Consensus 206 -~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~-~ 283 (349)
T 1pzn_A 206 -FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT-N 283 (349)
T ss_dssp -CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-E
T ss_pred -CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEE-c
Confidence 01334455555554444 7899999999999999852 4667778888877556666555 5
Q ss_pred cCCchhHhhcCeEEEecCCeEEEecCH
Q 001957 383 QPAPETYDLFDDIILLSDGQIVYQGPR 409 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~G~iv~~G~~ 409 (991)
|........|++...+..|+++.++..
T Consensus 284 h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC---------------CCCCCTTCS
T ss_pred ccccccccccCCccccCCcceEeecCc
Confidence 555555556666777777877766553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-16 Score=171.90 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---------cceEEEEecCCCCCCCCCHHHHH
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
+|++++|+||||||||||+++|+|++.++ +|+|.++|.++..... ++.++|++|+....|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999998 8999999998754221 23589999998888999999999
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~-----------------------d~-------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY-----------------------DL-------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC-----------------------SE-------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC-----------------------CE-------------------EEecCCCCCCchH--------HHHHHH
Confidence 875321 00 00 0112223322211 124455
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
++||++|||+++.+|+.++| .||+.+..++++.++++.+..+.|+|+.+|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999999994333 3444444455666666554446777776654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-15 Score=161.30 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=80.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++ . +..+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~--~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD--D----------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS--S----------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC--C----------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56889998772 1 1357999999999999999999999999999999999865 45899999998864
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...+++.+|||+|+..+++ .||+|+|.|.
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~ 99 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYG 99 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSC
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhh
Confidence 2346778999999987777 5999999985
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=158.42 Aligned_cols=99 Identities=27% Similarity=0.294 Sum_probs=81.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-...-..+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998872 2468999999999999999999999999999999999732224689999999885
Q ss_pred Cc---ccc-cceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ---ETF-ARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~---~tf-~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ... ++.+|||+|+....|.+||+|.+.+..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 32 112 234899999999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.4e-15 Score=156.53 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=81.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. + .|+|||+.+++ +++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788888762 1 29999999999 9999999999999999999999875 45899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...++.+|||+|+..+.|.+||+|++.|.+.++
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 2 234677999999998999999999999976543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-15 Score=184.61 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=95.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. .. .+..+++++| +++.+++
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PA--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SS--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------eh--hccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 44431 11 1234666665 4455555
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55432 25
Q ss_pred CChhHhHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 324 LSGGqrqRvsia~~L--~~~p~vLllDEP---TsGLD~~t~-~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.++|+++|. . +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~-~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHY-F-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCC-H-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCC-H-HHHHhh
Confidence 899999999999999 999999999999 999998775 578888865 36677776554 3 334444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-16 Score=163.99 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHhhccCceEEEEEecCC--------chhHh
Q 001957 323 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PETYD 390 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGL--D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~~~~ 390 (991)
..|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|+|++. |.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~-h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS-QYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE-C-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe-ccCcccccccccchhe
Confidence 458999988888777778999 99999999888 999999999999998875566666654 555 56889
Q ss_pred hcCeEEEecCC
Q 001957 391 LFDDIILLSDG 401 (991)
Q Consensus 391 lfD~vilL~~G 401 (991)
+||+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-15 Score=158.85 Aligned_cols=97 Identities=25% Similarity=0.354 Sum_probs=81.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++-. +...+|+|||+.++||+++||+|||||||||||++|+|-.. . +|+|+++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47899999887321 11357999999999999999999999999999999999875 3 79999999886
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.. ..+++.+|||+|+..+++ .||+|+|.|.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence 42 335678999999987776 5999999985
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-15 Score=183.22 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=102.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+++|+|+. ++|++++|+||||||||||||+|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 0 1 211111 0123455544 45555665
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 5543211 135
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i-~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|+++++ +..+...+.+|+++|||||++|+|+.....+ +..++.+.+..+.++|+++|. . +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~-~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY-F-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC-G-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCC-H-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 677777765346677776554 3 45679998877888887
Q ss_pred EEecC
Q 001957 404 VYQGP 408 (991)
Q Consensus 404 v~~G~ 408 (991)
.+...
T Consensus 748 ~~~~~ 752 (800)
T 1wb9_A 748 DALEH 752 (800)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 76543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=155.23 Aligned_cols=90 Identities=28% Similarity=0.432 Sum_probs=78.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++. .+|+|||+.+++|+++||+|||||||||||++|+|-.. .. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 677788764 24999999999999999999999999999999999876 35 99999999853
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...+++.+||++|+..+++.+||+|+|.|.
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence 234567899999998888999999999986
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=151.72 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=75.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++. ++..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4789999988741 12467999999999999999999999999999999999875 4589999999
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+||++|+....|. ||+|++.|..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~ 93 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGV 93 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTS
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccC
Confidence 37999999888775 9999999853
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-14 Score=153.90 Aligned_cols=88 Identities=22% Similarity=0.333 Sum_probs=75.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 678999988730 1357999999999999999999999999999999999865 3578887
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.++.+|||+|+..+.+.+||+|++.|.+.
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 92 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRS 92 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGG
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhh
Confidence 34678999999988899999999999754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=153.24 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+.-.. .++.+|+|||+.++ |+++||+|||||||||||++|+|-. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKG---------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEET---------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCC---------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECc
Confidence 56788988773110 12468999999999 9999999999999999999999986 35899999998754
Q ss_pred c-ccccceee-EEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISG-YCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~G-Y~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .. ++.+| ||+|+..+ .+||+|+|.|.+.++
T Consensus 69 ~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 69 KIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp GCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred chHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 2 22 56789 99998766 899999999976554
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-14 Score=150.90 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=75.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.- +...+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678999988731 12457999999999999999999999999999999999875 5689999999
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.+|||+|+.. .+..||+|+|.|...
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~ 91 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQ 91 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCccc
Confidence 2799999875 578999999998643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=169.95 Aligned_cols=99 Identities=23% Similarity=0.381 Sum_probs=84.8
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..+.++||+|.++.. +..+|+|||+.++||+++||+||||||||||+++|+|--. ..+|+|++||.
T Consensus 337 ~~~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDN-----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCSS-----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC-----------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 4579999999988531 2457999999999999999999999999999999999865 46899999999
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. ....++.+|||+|+..+++. ||+|++.|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 864 24567889999999887765 999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=171.21 Aligned_cols=98 Identities=27% Similarity=0.405 Sum_probs=83.8
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..+.++||+|.|+- +..+|+|||+.++||+.+||+||||||||||+++|+|--. ..+|+|++||.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 357999999998741 2357999999999999999999999999999999999865 46899999999
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. ....++.+|||+|+..+++ .||+|++.|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~ 452 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYG 452 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSS
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcC
Confidence 854 3456788999999987775 5999999985
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=161.41 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=82.8
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||++.|+. ....+|+|||+.+++|+++||+|||||||||||++|||-.. .+|+|+++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999988741 12467999999999999999999999999999999999764 58999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
... ..++|.+|||+|+..++| .||+|++.+.
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~ 117 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN 117 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhc
Confidence 653 335789999999999887 6999999754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-14 Score=172.33 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=85.1
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.++||+|.|+.. ...+|+|||+.++||+.+||+||||||||||+++|+|--. ..+|+|++||
T Consensus 338 ~~~~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFEN-----------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCCC-----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 34579999999988521 2457999999999999999999999999999999999765 4689999999
Q ss_pred ccCCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 932 ~~~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.+... ...++.+|||+|+..+++. ||+|+|.|.
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 440 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWG 440 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTT
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhcc
Confidence 98642 4567889999999887754 999999885
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-14 Score=153.53 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=99.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
-+++|++++|+||||||||||++.|++... .|++ +.|.+... ...+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~~---~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGELP---TGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCCC---CCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccCC---CccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998653 3554 33543321 345778876543 1 1111 010
Q ss_pred cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHH
Q 001957 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (991)
...+ ..+ .....+.+++.+++.+..+ ..+..||+||++++
T Consensus 88 ~~~g---------------~~~-------------------~~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALG---------------AHL-------------------SAEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHH---------------TTS-------------------CHHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH-
T ss_pred HHHH---------------hhc-------------------ChhhhhhccCceEEeecCC-----CCcccCCHHHHHHH-
Confidence 0000 000 0011334567777766544 34567999998876
Q ss_pred HHHHHhcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 334 ia~~L~~~p~vLllDEPTs--GLD~~t~---~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++ +|...
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i-~H~~~ 182 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHASK 182 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEE-ecCCC
Confidence 57888999999999999 9997444 888999999876566666665 55443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-14 Score=168.79 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=83.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||+|.|+.. ++.+|+|||+.++||+.+||+||||||||||+++|+|-.. ..+|+|++||.+
T Consensus 340 ~~i~~~~v~~~y~~~-----------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR-----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCCC-----------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 468999999988411 1357999999999999999999999999999999999865 458999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
... ...++.+|||+|+..+++. ||+|++.|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR 441 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccC
Confidence 642 3567789999999888774 9999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-14 Score=168.22 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=83.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||+|.|+.. ++.+|+|||+.++||+.+||+||||||||||+++|+|-.. ..+|+|++||.+
T Consensus 340 ~~i~~~~v~~~y~~~-----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK-----------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCCC-----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 468999999988421 1357999999999999999999999999999999999865 458999999988
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ...+++.+|||+|+..+++. ||+|++.|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA 441 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccC
Confidence 54 34567889999999887764 9999999863
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-16 Score=159.09 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (991)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 78899998765432 234567776545556788888877543210
Q ss_pred chhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC---cccCCC--ChhHhHHH
Q 001957 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD---EMIRGI--SGGQKKRV 332 (991)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqrqRv 332 (991)
. . +-....|...+. +..+.+ |+|++|++
T Consensus 71 ----------~----~---------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L----A---------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H----T---------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h----c---------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000000000 011234 88999888
Q ss_pred HHHH------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 333 sia~------~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
.++. +++.+|+...+|+ |||+..... ++.++.+.. .+.++|.+.|...+++.+++|+|+ .+|+++.+
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 8777 8888888888884 899988777 888877643 455666654432678999999999 99999999
Q ss_pred cCHHHH
Q 001957 407 GPRELV 412 (991)
Q Consensus 407 G~~~~~ 412 (991)
|+++-+
T Consensus 177 ~~~~~~ 182 (189)
T 2bdt_A 177 MAGDPL 182 (189)
T ss_dssp ------
T ss_pred ecCCch
Confidence 987654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-16 Score=178.12 Aligned_cols=166 Identities=16% Similarity=0.050 Sum_probs=99.5
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee----eEEEEC----CeeCCCccccceEEEEecCCC
Q 001957 167 ILKDVSGVIKP--GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS----GTVTYN----GHDMDEFVPQRTAAYISQHDN 236 (991)
Q Consensus 167 iL~~vs~~i~~--Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~----G~I~~n----G~~~~~~~~~~~~~yv~Q~d~ 236 (991)
+.+.|++.+++ |+.++|+||||||||||+++|+|+++++ + |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~--------------- 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-A--------------- 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-S---------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-c---------------
Confidence 56789999999 9999999999999999999999999987 7 776653 2221 0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+..... +++.+...- . .........++ .++.....++
T Consensus 218 -~~~~~~-~~I~~~~q~------~----~~~~~t~~~nl-----------------------------~~~~~~~~~~-- 254 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQR------Y----IDYAVRHSHKI-----------------------------AFIDTDFITT-- 254 (365)
T ss_dssp -SCTTTH-HHHHHHHHH------H----HHHHHHHCSSE-----------------------------EEESSCHHHH--
T ss_pred -CChhHH-HHHHHHHHH------H----HHHHHhccCCE-----------------------------EEEeCCchHH--
Confidence 111112 223332100 0 00000000000 0000000111
Q ss_pred cCcccCCCChhHhHHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~-~~p~vLllDE---PT------sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
....+|+|++||..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. || .
T Consensus 255 ---~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~ 329 (365)
T 1lw7_A 255 ---QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-S 329 (365)
T ss_dssp ---HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-S
T ss_pred ---HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-C
Confidence 12246677788888887764 5999999999 65 589999999999999887654456666653 55 3
Q ss_pred hhHhhcCeEEEec
Q 001957 387 ETYDLFDDIILLS 399 (991)
Q Consensus 387 ~~~~lfD~vilL~ 399 (991)
+..+++|.+.+|+
T Consensus 330 ~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 330 YLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666777666554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-14 Score=143.77 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=90.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHH
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSAR 252 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 252 (991)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999997753221 1234567777543 46788998877543
Q ss_pred hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHH
Q 001957 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332 (991)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRv 332 (991)
... ...... .++.++..+++...... +..+..+|+|++||+
T Consensus 78 ~~~------------~~~~~~------------------------~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------KEGYFV------------------------ILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------HTSCEE------------------------EECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHh------------ccCCeE------------------------EEeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 210 000000 00000000111111100 112346999999999
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 333 sia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
.++|++.++|+++ +|+.....+.+.++.+
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 9999999999876 6887777777766554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-14 Score=149.83 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=95.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH----HHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV----RETL 247 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l 247 (991)
.-..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|+...|+.+|+ .|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3457899999999999999999999999998862 3589999998776432 23567899997544443333 2222
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.+.... .+.|
T Consensus 88 ~~~~~~--------------------------------------------------------------------yg~~-- 97 (219)
T 1s96_A 88 EVFGNY--------------------------------------------------------------------YGTS-- 97 (219)
T ss_dssp EETTEE--------------------------------------------------------------------EEEE--
T ss_pred HHHhcc--------------------------------------------------------------------CCCC--
Confidence 111100 0111
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
+++ .+.++..++++||| ||+.++.++.+.+. .+.++++ +.|...++.+ |+ +.+| .+
T Consensus 98 -~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i-~th~~~~l~~---Rl--~~rG----~~ 153 (219)
T 1s96_A 98 -REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFI-LPPSKIELDR---RL--RGRG----QD 153 (219)
T ss_dssp -HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEE-ECSSHHHHHH---HH--HTTS----CS
T ss_pred -HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEE-ECCCHHHHHH---HH--HHcC----CC
Confidence 222 23444557999999 99999999998775 2445554 4555445444 43 7778 67
Q ss_pred CHHHHHHHHH
Q 001957 408 PRELVLEFFA 417 (991)
Q Consensus 408 ~~~~~~~~f~ 417 (991)
+.+++...+.
T Consensus 154 ~~e~i~~rl~ 163 (219)
T 1s96_A 154 SEEVIAKRMA 163 (219)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7887766554
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=132.50 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=69.1
Q ss_pred ccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..||||||||++||++|+ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|| ..+...+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEE
Confidence 45689999999999999996 56799999999999999999999999998753 3555555444 4678999999
Q ss_pred EEec--CCeE-EEecCHHHH
Q 001957 396 ILLS--DGQI-VYQGPRELV 412 (991)
Q Consensus 396 ilL~--~G~i-v~~G~~~~~ 412 (991)
+.+. +|.. +.....++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEEETTEEEEEECCHHHH
T ss_pred EEEEecCCEEEEEEEEcHHH
Confidence 9764 5643 333444443
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-13 Score=146.61 Aligned_cols=81 Identities=32% Similarity=0.455 Sum_probs=63.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+|.. +.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 57888888631 246999999999999999999999999999999999876 5689999999
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHH
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLL 963 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~ 963 (991)
.+|||+|+..+++. ||+|+|.
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh
Confidence 37999999887775 9999998
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-13 Score=159.35 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=86.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ . ...+.++|++|++.+++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~--t-~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK--T-VQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-------C-CEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc--c-eeeeeEEEEEecCCcccceee
Confidence 356999999998 99999999999999999999764311 2222222111 1 112457899998888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.||+.|+...... . . ...+.+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-------------~---------~--------------~~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-------------N---------C--------------WQPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-------------h---------h--------------HHHHHHHH-H-----------------HH
Confidence 9999886432100 0 0 00011111 0 13
Q ss_pred CChhHhHHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 324 ISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~---vLllDEPT-sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
++.+++||+.||++++.+|+ +|++|||| +|||+... .+ ++.+. .+.++|+.+++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 55677889999999999999 99999999 69998763 33 44443 25566666654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.5e-13 Score=138.23 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=58.3
Q ss_pred CCChhH--hHHHHHHHHHhcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHhhccCceEEEEEecCCc-----
Q 001957 323 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSS--------TTFQIVNCLRQNIHINSGTAVISLLQPAP----- 386 (991)
Q Consensus 323 ~LSGGq--rqRvsia~~L~~~-p~vLllDEPTsGLD~~--------t~~~i~~~L~~l~~~~~~t~ii~i~q~~~----- 386 (991)
..|+++ ++++..+++++.+ |+++++||||+++|.. ...++++.|+++++..+.++|++.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 345554 5678888899885 9999999999999973 23557777888887667777765443321
Q ss_pred -------hhHhhcCeEEEecCC
Q 001957 387 -------ETYDLFDDIILLSDG 401 (991)
Q Consensus 387 -------~~~~lfD~vilL~~G 401 (991)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-13 Score=155.13 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=85.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+|+++ ...+|++++|+|||||||||||++|+|.++++ -.|.|...+.++ ++......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc-------
Confidence 34444 57899999999999999999999999998764 135554433333 2222222344444321000
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
.++-
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (356)
T 3jvv_A 182 ----------------------------------------------------------------------------TLGF 185 (356)
T ss_dssp ----------------------------------------------------------------------------BSCH
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0111
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+ +||++|..+|++|++|||| |..+...+++ .+. .|.++++++ |..+.+ +.+||++.|..|
T Consensus 186 ~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~-H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 186 SE----ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTL-HTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEE-SCSSHH-HHHHHHHHTSCH
T ss_pred HH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEE-ccChHH-HHHHHHhhhcCc
Confidence 11 8999999999999999999 6665444333 333 466665555 444444 889999999654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-13 Score=152.51 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=94.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEe-cCCCC--CCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYIS-QHDNH--IGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (991)
+++++|+.+++|++++|+||||||||||+++|+|+++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999998 999999985311111 345688888 54321 13334
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+
T Consensus 241 ~------------------------------------------------------------------------------- 241 (361)
T 2gza_A 241 A------------------------------------------------------------------------------- 241 (361)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
|..|+.++..+|+.+++||++. .++.+.|+.+.. ...+++.++|.. .+...+||+..|..|.
T Consensus 242 --------~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 242 --------ATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp --------HHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred --------HHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444455555778999999986 234445555432 334566666553 5788899999987764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-14 Score=147.65 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHHcCCcccccccccCcccCCCChhHhHH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001957 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR-vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
..++..+++.. .+++ ....+|+||||| +..+++++.+|.++++|||||+||.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 1232 234699999999 8899999999998999999999999999999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-14 Score=140.93 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.++++||+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 45899999999999999999999999999999999999 77 999999998774211111 2789987777 89999
Q ss_pred HHHHH
Q 001957 245 ETLAF 249 (991)
Q Consensus 245 E~l~f 249 (991)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-14 Score=150.31 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~La---G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 998876 8999888765321 1123345566777778888999999875421
Q ss_pred --------cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--cccc-------ccc
Q 001957 254 --------QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCAD-------TMV 316 (991)
Q Consensus 254 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~d-------t~v 316 (991)
.+..... .+ .+.+....... ...| ..+
T Consensus 102 ~~~~~~il~g~~~~~------~~------------------------------~~~l~~~~~~~~vi~L~~~~~~~l~r~ 145 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL------GQ------------------------------AEALDKICEVDLVISLNIPFETLKDRL 145 (246)
T ss_dssp CTTSCEEEESCCCSH------HH------------------------------HHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred cCCCeEEEECCCCCH------HH------------------------------HHHHHhhcCCCEEEEEECCHHHHHHHH
Confidence 1110000 00 00000000000 0000 011
Q ss_pred cCcccCCCChhHhHHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHhh
Q 001957 317 GDEMIRGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L-~~~p~vLllD----EPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
.++.+..||| || +++ +.+|++++|| |||+|||..+...+.+.|+++.+
T Consensus 146 ~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 1344567999 65 667 9999999999 99999999999999999988754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-12 Score=150.34 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=103.0
Q ss_pred eeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC---ccccceEEEEecCCCCCCCCC
Q 001957 168 LKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---FVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 168 L~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~~~~~~~~yv~Q~d~~~~~lT 242 (991)
|++||+.+++|++ ++|+||||||||||+|+|+|..- .| .++.. ....+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999841 22 22211 112357899999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCc----cccccc--
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLD----VCADTM-- 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~-- 315 (991)
|.||+.|+.... .......+. .+ .....+.+|... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~i~---------------~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKPIV---------------EF----------IDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHHHH---------------HH----------HHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhHHH---------------HH----------HHHHHHHHHHHHHhhhhhhccccccccc
Confidence 999998764311 000000000 00 111223334433 443 112322
Q ss_pred --cc--CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 316 --VG--DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 316 --vg--~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
+. .+...+|+-.+ +.|+++|..+++++++|||+..|.......+.+.+++-....|..++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~ 213 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIY 213 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEE
Confidence 11 11124576666 78999999999999999999999999888888888873333444443
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-12 Score=134.80 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhccCceEEEEEecCCchh-------------------
Q 001957 340 GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPET------------------- 388 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~-------t-----~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~------------------- 388 (991)
.+|+++++|||++.+|+. . ..+++..|+++++..+.|+|++ +|...+.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~-~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVIT-NQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-C-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEE-eeeeecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 3567777888777656666655 5544333
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2389999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-14 Score=141.75 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------cc-ceEE----EEecCCCCCCCCCHHHHH
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQ-RTAA----YISQHDNHIGEMTVRETL 247 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (991)
++++|+|+||||||||+++|+|++++.....|.|.+||+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875334799999999854432 12 2355 778865543 100
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
+ . . +. .+ ..+.+++. .|+ .+||.+++ +||||
T Consensus 77 -------~--~-~----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-E----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-H----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-h----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 0 00 00 01223333 133 57999986 59999
Q ss_pred HhHHHHHHHHHhcCCcE
Q 001957 328 QKKRVTTGEMMVGPALA 344 (991)
Q Consensus 328 qrqRvsia~~L~~~p~v 344 (991)
||||++|||+++++|++
T Consensus 108 q~qri~lARall~~p~i 124 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CCCEEEECSSGGGGGGG
T ss_pred CCcEEEEEecccCCCcc
Confidence 99999999999999876
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-12 Score=145.58 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=93.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+|++++ +++|++++|+|||||||||||++|+|+++++ -+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 678876 8999999999999999999999999998762 1699987776654 23345567787741
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0010 0123
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.++ ++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~v-i~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHLV-FGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCEE-EECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCEE-EEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 45555 444555 45888899987774
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-14 Score=159.05 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCeeeEEEECCeeCCCccc------------------cceEEEE-
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVP------------------QRTAAYI- 231 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~~nG~~~~~~~~------------------~~~~~yv- 231 (991)
++++|+|+||||||||||.|.|.. .++ .|+|.+||.++..... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 455 8999999998754321 1234555
Q ss_pred --ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHH-HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 --SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL-ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 --~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+..+++..+|.||..++... .....+ ...+. .....++.++..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~----------------------~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVL----------------------CQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHH----------------------HHHEEEEEEEEEEET
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccc----------------------cCeEEECCEEEEEEH
Confidence 4655556677777776654100 000000 00000 000001112223344
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
.+..+.. ..+|+||+||+..+++++.+|+++ ||| ..+.+.|+++. .+.+++++.|.+ .++
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~-~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGD-IDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSC-CCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccC-CCH
Confidence 3333322 258999999998888888888877 888 67788888763 456666655543 344
Q ss_pred HhhcC
Q 001957 389 YDLFD 393 (991)
Q Consensus 389 ~~lfD 393 (991)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 44443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-12 Score=147.73 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc------c---ccceEEEEecCCCCC
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V---PQRTAAYISQHDNHI 238 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (991)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 47899999999999999999999999999999999887 89999988775432 1 134689999998888
Q ss_pred CCCCHHHHHHHHH
Q 001957 239 GEMTVRETLAFSA 251 (991)
Q Consensus 239 ~~lTV~E~l~f~~ 251 (991)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-12 Score=129.46 Aligned_cols=80 Identities=23% Similarity=0.138 Sum_probs=66.9
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
+.+|++||+.++||+++||+||||||||||+++|+|-. + .+|+|.++|++... ... ..+|+.|+..+. .+||+|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~-~~~-~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVE-EYN-IAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEE-EEE-ETTEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeee-ecc-CCCcceeccccc-cCCcHH
Confidence 56899999999999999999999999999999999987 2 58999999998752 222 124899987666 899999
Q ss_pred HHHhhh
Q 001957 961 SLLFSA 966 (991)
Q Consensus 961 sL~fsA 966 (991)
.+.+.+
T Consensus 94 ~l~~~g 99 (158)
T 1htw_A 94 ELEFMG 99 (158)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 997654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-12 Score=140.17 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=62.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---------cceEEEEecCCCCCCCCCHHH
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.|++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999999987 8999999998754321 123569999988899999999
Q ss_pred HHHHHH
Q 001957 246 TLAFSA 251 (991)
Q Consensus 246 ~l~f~~ 251 (991)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-12 Score=143.34 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=80.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEEC-CeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYN-GHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
-|++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..+++..||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35566654 4899999999999999999999999998 87 9999987 765432 2346789999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|+ .. .+.. ..+ ....++++++.+|+.+..|.. ..++
T Consensus 280 e~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~-----~~~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCK-----HDAD 315 (358)
T ss_dssp TC---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCC-----SSSC
T ss_pred Hh---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCC-----cccC
Confidence 83 21 1110 000 001123456778887666543 4579
Q ss_pred ChhHhHHHHHHHHH
Q 001957 325 SGGQKKRVTTGEMM 338 (991)
Q Consensus 325 SGGqrqRvsia~~L 338 (991)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999865
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-12 Score=128.40 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=39.5
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 339 VGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 339 ~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999996 9999999999998887654 577888888777665
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=132.55 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcc-------cccccccC----cccCCCChhHhHHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHH
Q 001957 299 TDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTF 360 (991)
Q Consensus 299 ~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqrqRv------sia~~L~~~-p~vLllDEPTsGLD~~t~~ 360 (991)
++..++.+++.+ ..+..+.+ ..+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777655 11222222 34568999999988 557888999 9999999999999999999
Q ss_pred HHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 361 ~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+.+.|+++. .+.++|++.|++ ++..++|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEEEEChH--HHHhhCCEEEEEE
Confidence 9999999863 245666666553 4789999999997
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-12 Score=139.34 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (991)
+++.+++|.||||||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 22 0 1344566699887664 588899887631000
Q ss_pred CCchhhhhHHHHHHHHHcCCCCC-CChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc-----CcccCCCChhHh
Q 001957 256 VGTRYEMLTELARREKAAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG-----DEMIRGISGGQK 329 (991)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg-----~~~~~~LSGGqr 329 (991)
.-.. .+. |+ .|.+ .....++.+.- ..+|..+ ..+...+||||+
T Consensus 92 l~~~-------------~g~-p~a~d~~---------------~l~~~l~~l~~--g~~t~~~~~v~~p~y~~~~sgGq~ 140 (290)
T 1odf_A 92 LLQG-------------RGL-PGTHDMK---------------LLQEVLNTIFN--NNEHPDQDTVVLPKYDKSQFKGEG 140 (290)
T ss_dssp GGSS-------------SCS-TTSBCHH---------------HHHHHHHHHTC--------CCEEEECCEETTHHHHTC
T ss_pred hhhh-------------ccC-cchhHHH---------------HHHHHHHHhhc--cCccccCcceeeccCccccCCccc
Confidence 0000 000 10 1111 11223444422 2222111 134468999999
Q ss_pred HHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 001957 330 KRVTTG--EMMVGPALALFMDEISTGLDSST 358 (991)
Q Consensus 330 qRvsia--~~L~~~p~vLllDEPTsGLD~~t 358 (991)
||+.+| +++ +|+|||+|||++|||+..
T Consensus 141 ~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 141 DRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccccceEc--CCCEEEEeCccccCCccc
Confidence 999987 554 999999999999999853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-13 Score=150.87 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=109.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.++ +|+|.++|.++.... .++.++|++|+...
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 45899999999999999999999999999999999999887 899999998874321 24568999998877
Q ss_pred CCCC------------CHHHHHHHHHHhc--------CCCchhhhhHHHHHHHHHcCC---CCCCC-hHHHHHHHHhhhh
Q 001957 238 IGEM------------TVRETLAFSARCQ--------GVGTRYEMLTELARREKAAGI---KPDPD-IDVYMKAIATEGQ 293 (991)
Q Consensus 238 ~~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 293 (991)
++.. +++|.+... ... .+|-.... ..+ ....++ .-++. .+. .+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~-~~v---~~~~d~vl~v~d~~~~~~-~~~------ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSE-TAV---ADLTDFFLVLMLPGAGDE-LQG------ 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCH-HHH---HTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcch-hhH---HhhCCEEEEEEcCCCccc-HHH------
Confidence 6542 233333111 000 01110000 000 000000 00000 000 000
Q ss_pred hhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHH
Q 001957 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLR 367 (991)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~ 367 (991)
......+....+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.
T Consensus 187 -i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 187 -IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred -HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 00001111112222 112210 124579999999999998887 578877 99999999999999998
Q ss_pred HHh
Q 001957 368 QNI 370 (991)
Q Consensus 368 ~l~ 370 (991)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-11 Score=140.85 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=102.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
-++|++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 489999999999999999999999999999999843 2334433322 223555555430 111111111
Q ss_pred HH---HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 248 AF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
-+ +....+.+. ...+.. ..++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 000000 0011123333332 2345679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|+|++||+.+|++|+..|.+|++ +++|...+ ..++.+++..+..+.+++.++.+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99998776 55566655554445666666655555666666544
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-12 Score=148.26 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=91.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEe-----
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYIS----- 232 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~----- 232 (991)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... ..+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999887 899999998774211 112334444
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 233 ----QHDNH--IGE----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
|++.. +++ .|+.+++.++..-+..-.. +.. .+. ...++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------lh~-~~~--------------~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------LHT-NTA--------------VGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------ECC-SSS--------------HHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------cch-hhH--------------HHHHH-H
Confidence 77554 354 6888888776421110000 000 000 01112 3
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeE
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLl 346 (991)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667776532 235799999999 9999999999866
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-11 Score=132.71 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=78.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCcccc---ceEEEEecCCCCC-----CCCCHH
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVPQ---RTAAYISQHDNHI-----GEMTVR 244 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 244 (991)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 98887 999999 99887643211 2479999987543 78999
Q ss_pred HHH--HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCccc
Q 001957 245 ETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMI 321 (991)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (991)
|++ .|.. . .++. .+..+-.+.. +....++++++.++|++ .++. ++
T Consensus 238 e~l~~~f~~-~----------~~~~--c~~~~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~-----~~ 285 (302)
T 2yv5_A 238 REVRNYFRE-F----------LRYQ--CKYPDCTHTN--------------EPGCAVKEAVKNGEISCERYKS-----YL 285 (302)
T ss_dssp GGGGGGCGG-G----------HHHH--HHSTTCCSSS--------------CTTCHHHHHHHTTSSCHHHHHH-----HH
T ss_pred HHHHHHHHH-H----------HHcc--CCCCCCCCCC--------------CCCCHHHHHHHcCCCCHHHHHH-----HH
Confidence 888 4431 0 0000 0000000000 11124567888999975 5553 45
Q ss_pred CCCChhHhHHHHHHH
Q 001957 322 RGISGGQKKRVTTGE 336 (991)
Q Consensus 322 ~~LSGGqrqRvsia~ 336 (991)
+.|||.++|++.||+
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 679998899998886
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-13 Score=155.82 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=65.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+++++++.+++|+.++|+|||||||||||++|+|+++++ +|.|+++|.+--.......+.++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999998 9999999865222222345667776654333467777
Q ss_pred HHHHHHH
Q 001957 246 TLAFSAR 252 (991)
Q Consensus 246 ~l~f~~~ 252 (991)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 7776655
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-10 Score=132.88 Aligned_cols=63 Identities=6% Similarity=-0.029 Sum_probs=44.9
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHhhccCceEEEEEecC--C----------------chhH
Q 001957 340 GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQP--A----------------PETY 389 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~t~------------~~i~~~L~~l~~~~~~t~ii~i~q~--~----------------~~~~ 389 (991)
.+|+++++|||++.+|.... .++++.|+++++..+.|+|++.|-. . ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996543 6788899999887777777765541 0 2245
Q ss_pred hhcCeEEEecCCe
Q 001957 390 DLFDDIILLSDGQ 402 (991)
Q Consensus 390 ~lfD~vilL~~G~ 402 (991)
..+|.++.|..|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999997653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.1e-14 Score=144.88 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 334 ia~-~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 444 6788999999999999999999999999998765421 1122 22 67999988863
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-10 Score=125.09 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=68.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q 001957 181 TLLLGPPSSGKTTLLLALAG-KLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG-~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (991)
++|.||||+|||||+++|++ ++.+. .|.|.++|.+..... .+..+++++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 67777 899999998764322 13557788886543111100 00000
Q ss_pred hhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHH
Q 001957 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (991)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L 338 (991)
+ ..+...++.+......+.. . .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhcccccc-----c-cccc-----------c
Confidence 0 0001111221111001110 0 3566 7
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 339 ~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
..+|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998853 3455666655554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-10 Score=112.12 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.+|+++ +|+.++|+||||||||||+++|++.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666 8999999999999999999999998765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-12 Score=146.06 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=115.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhc------------CcCCCCCeeeEEEECCeeCCC----ccccceE---EEEecC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPTLKVSGTVTYNGHDMDE----FVPQRTA---AYISQH 234 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG------------~~~~~~~~~G~I~~nG~~~~~----~~~~~~~---~yv~Q~ 234 (991)
.+++|..++|+|+||||||||+|+|+| ...|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 557899999999999999999999999 33455 8999999854321 1223333 366676
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 DNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
.-+...++..|.| .|-..++.. +.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7677777766655 333322211 00111111111
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-hhccCceEEEEEecCCchhH
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQN-IHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l-~~~~~~t~ii~i~q~~~~~~ 389 (991)
+..+..+||+. +| +++++|||+.++|.......++.++.. .+ .+.|+ + .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti-~--sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTL-E--MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSS-S--HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCcc-c--cccHHHHH
Confidence 22233466653 88 999999999999999999999999887 43 45553 2 56778899
Q ss_pred hhcCeEE-EecCC-eEEEecCH
Q 001957 390 DLFDDII-LLSDG-QIVYQGPR 409 (991)
Q Consensus 390 ~lfD~vi-lL~~G-~iv~~G~~ 409 (991)
++||++. +|.+| ++++.|+.
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHhccCCceeecCCC
Confidence 9999999 99999 99887764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-11 Score=128.99 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=28.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.++|++++|+||||||||||+++|+|++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-10 Score=126.49 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=48.0
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+||+|+|||||||||++|+|... ..+|+|.++|.+......++.+||++|++...+.+||.|++.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcc
Confidence 479999999999999999999876 468999999998776667789999999999999999999999976554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-12 Score=139.84 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=94.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (991)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999987644221 23456666652 34455
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+++.|++.+....++. .. .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHH-----HHH
Confidence 5555555542211000 00 00 001111 123
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs------------GLD~~t~~~i~~~L 366 (991)
...|||||+||+.++++++.+|++| ||+.. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3469999999999999999999975 98864 23666666666654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-10 Score=126.79 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCccc---cceEEEEecCCC-----------
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP---QRTAAYISQHDN----------- 236 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~---~~~~~yv~Q~d~----------- 236 (991)
.+.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|++++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8988764321 135789999864
Q ss_pred -----CCCCCCHHHHHHHH
Q 001957 237 -----HIGEMTVRETLAFS 250 (991)
Q Consensus 237 -----~~~~lTV~E~l~f~ 250 (991)
++|++|| ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888999 988885
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-11 Score=132.16 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEE---CCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHH
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTY---NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (991)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 77 899999 88765321 23456788 877778899999999887
Q ss_pred HHh
Q 001957 251 ARC 253 (991)
Q Consensus 251 ~~~ 253 (991)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-10 Score=130.92 Aligned_cols=100 Identities=16% Similarity=0.026 Sum_probs=80.2
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc-
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY- 932 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~- 932 (991)
..+.++++++.+.. ...+|+++ +.+.+|+.++|+|+|||||||||++|+|-... ..|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t------------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT------------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCC------------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCC
T ss_pred CceEEeccceecCC------------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEecee
Confidence 34677777765531 23579999 99999999999999999999999999998753 4799999998
Q ss_pred --cCCc--------ccccceeeEEecc-CCCCCCCCHHHHHHhhhhc
Q 001957 933 --PKKQ--------ETFARISGYCEQN-DIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 933 --~~~~--------~tf~r~~GY~eQ~-Dih~p~~TVrEsL~fsA~L 968 (991)
+... ...+|.++||.|+ +...+.+||.|++.+.|..
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~ 241 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAED 241 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3321 2367889999996 5568899999999998764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-09 Score=117.64 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=50.1
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
++.+|+|||+.+++|.++||.|+||||||||+++|+|.. | .+.++ ..++.+||+.|++ ..+.+|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G----~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL--G----QNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH--T----GGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh--c----hhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 467899999999999999999999999999999999865 2 22222 2467789999987 55689999
Q ss_pred HHHHhhhh
Q 001957 960 ESLLFSAW 967 (991)
Q Consensus 960 EsL~fsA~ 967 (991)
|.+.+...
T Consensus 77 ~~~~~~~~ 84 (245)
T 2jeo_A 77 QKAKALKG 84 (245)
T ss_dssp HHHHHHTT
T ss_pred Hhhhhhcc
Confidence 99987544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-10 Score=115.99 Aligned_cols=68 Identities=16% Similarity=0.000 Sum_probs=44.9
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC----cccccceeeEEeccCCCCCCC
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETFARISGYCEQNDIHSPFV 956 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~----~~tf~r~~GY~eQ~Dih~p~~ 956 (991)
-|+|||+.+++|+++||+||||||||||+++|+|.. . |+|.+ |.+.. .....+..||++|+...++.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 399999999999999999999999999999999976 2 67888 66531 122456789999987655443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-11 Score=137.29 Aligned_cols=154 Identities=20% Similarity=0.224 Sum_probs=94.8
Q ss_pred eeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCc---cccceEEEEecC
Q 001957 166 TILKDVSGVIKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (991)
Q Consensus 166 ~iL~~vs~~i~~G-------e~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~ 234 (991)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777766 7899999999999999999999873221 1367776666554321 113568999987
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+.+ ++.|+|.......+.. .. .... .....++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~------------------------~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQID----IM--IGKG------------------------PSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhcccc----ee--eccC------------------------cccccccccCCCeEEEE-ecC
Confidence 76554 7888885443221100 00 0000 00001222333445533 444
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~ 373 (991)
.. ..||+|+|||+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Cc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 33 47999999998543 7788888899999998877543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-09 Score=123.62 Aligned_cols=83 Identities=20% Similarity=0.106 Sum_probs=63.0
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-cccccceeeEEe-ccCCC--CCCCCH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCE-QNDIH--SPFVTI 958 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-~~tf~r~~GY~e-Q~Dih--~p~~TV 958 (991)
++++||+.+++|++++|+|+||||||||+++|+|.-.. .+|.|+|+|...- ....++.++|+. |.+.. ++..|+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 45999999999999999999999999999999998653 4799999986421 223677889999 66554 489999
Q ss_pred HHHHHhhhh
Q 001957 959 YESLLFSAW 967 (991)
Q Consensus 959 rEsL~fsA~ 967 (991)
+|+|.+..+
T Consensus 242 ~~~i~~~l~ 250 (361)
T 2gza_A 242 ATLLRSCLR 250 (361)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-10 Score=121.77 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCC-CC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 953 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Di-h~ 953 (991)
++++|+.+++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+. .+ ++.+||++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 356888899999999999999999999999999854 2358999999875421 23 236899999988 89
Q ss_pred CCCCHHHHHHhhh
Q 001957 954 PFVTIYESLLFSA 966 (991)
Q Consensus 954 p~~TVrEsL~fsA 966 (991)
|..||+|++.+..
T Consensus 168 ~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 168 AATVLSKAVKRGK 180 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-10 Score=118.31 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=53.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
...|+| -.+++|+++||+||||||||||+++|+|-.. .+.+++.+.+.+.. ...++.+||++|+...++.+||+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 345777 5899999999999999999999999999864 34455555554432 223567899999988888999988
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
++.+
T Consensus 84 ~l~~ 87 (207)
T 1znw_A 84 ELLE 87 (207)
T ss_dssp CEEE
T ss_pred Ccee
Confidence 8753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-09 Score=120.41 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=43.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCccc-cce-EEEEecCCCCCC----CCCHH
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP-QRT-AAYISQHDNHIG----EMTVR 244 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~ 244 (991)
.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|++|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45689999999999999999999999999887 999999 8877654321 122 689999987655 6899
Q ss_pred HHHH
Q 001957 245 ETLA 248 (991)
Q Consensus 245 E~l~ 248 (991)
|+|.
T Consensus 245 e~l~ 248 (307)
T 1t9h_A 245 EELG 248 (307)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8884
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-10 Score=123.07 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=53.3
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+++|+++||+|+||||||||+++|+|--.. . +|. +.+||++|++.|.|. ||+|++.+.++...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCC
Confidence 799999999999999999999999997542 1 221 457999999999998 99999876443223
Q ss_pred CCCCCH
Q 001957 971 SPEVDS 976 (991)
Q Consensus 971 p~~v~~ 976 (991)
|...+.
T Consensus 150 ~~~~d~ 155 (312)
T 3aez_A 150 PESYNR 155 (312)
T ss_dssp GGGBCH
T ss_pred ChHHHH
Confidence 444433
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-10 Score=118.95 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=61.9
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCH----HHHHHh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI----YESLLF 964 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TV----rEsL~f 964 (991)
-..++|++++|+||||||||||+++|+|......+.|.|.++|++.. ...++..||++|....++.+|+ .|++.|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~-~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR-PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC-cccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 35689999999999999999999999998652247899999998864 3345678999999888888888 777776
Q ss_pred hhhc
Q 001957 965 SAWL 968 (991)
Q Consensus 965 sA~L 968 (991)
.+.+
T Consensus 90 ~~~~ 93 (219)
T 1s96_A 90 FGNY 93 (219)
T ss_dssp TTEE
T ss_pred Hhcc
Confidence 5544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-09 Score=124.41 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 222 (991)
..+|+|||+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 4589999999999 999999999999999999999999998 99999999987643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-09 Score=114.55 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=68.5
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-eEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
+|+||| ++||+++||+|||||||||||++|+|-.. .. +|+|.++|.|.. -.++...+|++|..+.....+.+.+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~-~~~~~~~~~v~q~~~gl~~~~l~~~ 90 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 90 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce-eecCCcceeeeHHHhCCCHHHHHHH
Confidence 488999 99999999999999999999999999753 23 689999998864 2345556788885544333555655
Q ss_pred HHhhhhccCCCCC-------CHHHHhccc
Q 001957 962 LLFSAWLRLSPEV-------DSETRKVGT 983 (991)
Q Consensus 962 L~fsA~LRlp~~v-------~~~~k~~~v 983 (991)
|. ..||+.+++ +.++....+
T Consensus 91 la--~aL~~~p~illlDEp~D~~~~~~~l 117 (261)
T 2eyu_A 91 LR--AALREDPDVIFVGEMRDLETVETAL 117 (261)
T ss_dssp HH--HHHHHCCSEEEESCCCSHHHHHHHH
T ss_pred HH--HHHhhCCCEEEeCCCCCHHHHHHHH
Confidence 54 456666666 666654433
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-10 Score=124.17 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEE
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~ 928 (991)
.+.++||+|.++ ..+|+|||..++||+++||+||||||||||+++|+|-- +|.|.
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~ 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL 155 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE
Confidence 378889998764 13599999999999999999999999999999999876 45663
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.4e-09 Score=113.73 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=79.1
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHH
Q 001957 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (991)
Q Consensus 171 vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (991)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.... + ..|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~------~-------------a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRA------A-------------AIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCH------H-------------HHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccH------H-------------HHHHH---
Confidence 34556899999999999999999999999998775 67787766543110 0 00111
Q ss_pred HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhH
Q 001957 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (991)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (991)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233455542 2357899999
Q ss_pred HH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001957 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (991)
Q Consensus 331 Rv---sia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~ 370 (991)
++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999974 334455666665543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-09 Score=119.45 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=66.2
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCC-CCC
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 954 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Di-h~p 954 (991)
+.+++.+++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+. .+ ++.++|++|+.. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 45788889999999999999999999999999854 2358999999875421 22 346899999988 899
Q ss_pred CCCHHHHHHhhh
Q 001957 955 FVTIYESLLFSA 966 (991)
Q Consensus 955 ~~TVrEsL~fsA 966 (991)
..||+|++.+..
T Consensus 226 ~~tv~e~l~~~~ 237 (359)
T 2og2_A 226 ATVLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999999999853
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-10 Score=116.44 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc-ccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR-kt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
++.+|+|| ++|+++||+|||||||||||++|+|- .+.|.|.+. .++ .+ ....++.+||++|+.
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~-~~~-~~--~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRI-ILT-RP--AVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEE-EEE-EC--SCCTTCCCCSSCC--
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeE-Eec-CC--chhhhcceEEecCCH
Confidence 45789986 89999999999999999999999997 235666542 122 22 124567899999975
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-09 Score=126.18 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=63.3
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE-E-EEEcCccCCcccccceeeEEeccC---CCCCCCCHH
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQND---IHSPFVTIY 959 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G-~-I~inG~~~~~~tf~r~~GY~eQ~D---ih~p~~TVr 959 (991)
.++|+.+++|+.++|+|+||||||||+++|+|-.. ..+| + |++||.+ +|.+||++|+. .+.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~------~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP------QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc------cCCeeeeccchhhcccccccchh
Confidence 36889999999999999999999999999999865 3578 8 9999932 56789999988 366778999
Q ss_pred HHHHhhhhc
Q 001957 960 ESLLFSAWL 968 (991)
Q Consensus 960 EsL~fsA~L 968 (991)
|++ |.+..
T Consensus 201 eni-~~~~~ 208 (460)
T 2npi_A 201 LPT-WGQSL 208 (460)
T ss_dssp CTT-CSCBC
T ss_pred hhh-ccccc
Confidence 998 76553
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.4e-08 Score=102.69 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=44.0
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHhhccCceEEEEEecCCch--------hHhhcCeEEEecC
Q 001957 340 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (991)
Q Consensus 340 ~~p~vLllDEPTsGL--D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~--------~~~lfD~vilL~~ 400 (991)
.+|+++++|+|++.+ |.....+++..|.++++..+.++|++.| ...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h-~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ-VSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE-CC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655667777777777666667666554 4433 5678899999964
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-09 Score=122.29 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------c--ccceeeEEeccCCCCC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 954 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------t--f~r~~GY~eQ~Dih~p 954 (991)
-++||+.+++|++++|+|+||||||||+..|||... ...|+|.++|...... . .++.+||+.|+....|
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 357888899999999999999999999999999854 2358999987654321 2 2566899999988899
Q ss_pred CCCHHHHHHhh
Q 001957 955 FVTIYESLLFS 965 (991)
Q Consensus 955 ~~TVrEsL~fs 965 (991)
..||+++|.+.
T Consensus 361 ~~tV~e~l~~a 371 (503)
T 2yhs_A 361 ASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.7e-08 Score=107.76 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=86.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (991)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++. ...++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~---~r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDT---YRIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCC---SSTTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCc---ccchHHHHHHHHHH---
Confidence 479999999999999999999999998754 45 2355666543 13445555544321
Q ss_pred CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHH
Q 001957 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335 (991)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia 335 (991)
.+|++... ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~~----------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLEV----------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCCB----------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeEe----------cCC-HHHHHHHHH
Confidence 12222110 012 223345555
Q ss_pred HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh---ccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 336 ~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~---~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
+ +.+|+++|+| |+|+|+.....+.+.. ++.. ..+..+|+...|...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999986665444433 3322 11223333235555677777887766777777764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-10 Score=126.19 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=61.6
Q ss_pred eeeccCceeeeeCCe--------------------EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCccccc
Q 001957 881 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 940 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~--------------------ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~ 940 (991)
..+|+|||..+++|+ .+||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357999999999999 999999999999999999999865 34688888886642
Q ss_pred ceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 941 RISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 941 r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
|. ||+.|.+ +.|++||+|++.|.
T Consensus 109 ~~-~~v~q~~-~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 109 ME-RHPYKHP-NIPNVVFWDLPGIG 131 (413)
T ss_dssp CC-CEEEECS-SCTTEEEEECCCGG
T ss_pred ee-EEecccc-ccCCeeehHhhccc
Confidence 22 8999985 57899999887664
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-09 Score=124.22 Aligned_cols=76 Identities=24% Similarity=0.201 Sum_probs=55.9
Q ss_pred ccCceeeeeCCeE--EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 884 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 884 L~~VSg~~~pG~l--tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
|++||..+++|+. +||+|+|||||||||++|+|....|. -. ... ......+.+||+.|.+...+.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~----~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE----PA-THT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCC----cC-CCC--CccceEeeEEEEeecCccccccchhhh
Confidence 8999999999999 99999999999999999999853221 11 111 112335678999999888889999999
Q ss_pred HHhhh
Q 001957 962 LLFSA 966 (991)
Q Consensus 962 L~fsA 966 (991)
+.|..
T Consensus 103 ~~~g~ 107 (427)
T 2qag_B 103 VGFGD 107 (427)
T ss_dssp ECCCC
T ss_pred hhhhh
Confidence 87753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-09 Score=115.84 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=78.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeee-------------------eCCeEEEEeeccCCChhhhhhhhh
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~-------------------~pG~ltALmG~SGAGKTTLldvLa 915 (991)
.++++||+..+. .++++|+..+ ++|+++||+|+||||||||+++|+
T Consensus 37 ~i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 367788875541 2367777766 899999999999999999999999
Q ss_pred ccccCCeeeEEEEE---cCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCC
Q 001957 916 GRKTGGYITGNITI---SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (991)
Q Consensus 916 gRkt~G~i~G~I~i---nG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~ 972 (991)
|....-..+|+|.+ +|+.... ...+..||+ |...+.+.+|+.|.+.+-+.++...
T Consensus 102 ~~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~ 159 (308)
T 1sq5_A 102 ALLSRWPEHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV 159 (308)
T ss_dssp HHHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC
T ss_pred HHHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC
Confidence 96421123688999 9998653 345667999 7777889999999999988887543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-09 Score=128.29 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=99.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC--------
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-------- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-------- 236 (991)
..+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+... ..++|+++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45889999999999999999999999999999999999875 1389999988776543 45788876421
Q ss_pred --------------CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 237 --------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 237 --------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
.+..+++.+|+... .+... +.+-+. ... ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~--------------------~~~~v~-----------~~~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRT--------------------KAPFID-----------ATG---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTCS--------------------SCCEEE-----------CTT---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccCC--------------------CCCEEE-----------cCC---CCH
Confidence 11111111111100 00000 000000 000 001
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~ 368 (991)
.+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12223211111 1124799999999999999999999999999998 898888777777764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-08 Score=117.79 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=107.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
....|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|+.- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 356799999889999999999999999999999999875432 22 12344432 2333
Q ss_pred HHHHHHH-HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
.+...-. +...+... ..+ ....+ ..+.+ ..+...++.++..+.. +- ...
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~~g~l----~~~~~------------~~~~~a~~~l~~~~l~---i~--d~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----RTGKL----TPEDW------------GKLTMAMGSLSNAGIY---ID--DTP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----HTSCC----CHHHH------------HHHHHHHHHHHSSCEE---EE--CCT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----hcCCC----CHHHH------------HHHHHHHHHHhcCCEE---EE--CCC
Confidence 2222110 00011110 000 00000 00000 0112223333322211 11 124
Q ss_pred CCChhHhHHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHhhccCceEEEEEec---------
Q 001957 323 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ--------- 383 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~--~~p~vLllDEPTsGLD~--------~t~~~i~~~L~~l~~~~~~t~ii~i~q--------- 383 (991)
++|.+|.+ +.++.++ .+|+++++|+++...+. ....++.+.|+.+++..+.++|++.|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 68999987 4566665 68999999999997742 334678888999988777666665440
Q ss_pred --CC-------chhHhhcCeEEEecCCeE
Q 001957 384 --PA-------PETYDLFDDIILLSDGQI 403 (991)
Q Consensus 384 --~~-------~~~~~lfD~vilL~~G~i 403 (991)
|. ..+.+.+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 157788999999987654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-08 Score=113.04 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
+|+++|..+++|++++|+|+|||||||||++|+|-... .+|.|+|+|.+.-. ...++.++|+.| ...+.|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~ 232 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADC 232 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC-----CChhHHHH
Confidence 58999999999999999999999999999999998653 47999999976321 225677889886 78899999
Q ss_pred HHh
Q 001957 962 LLF 964 (991)
Q Consensus 962 L~f 964 (991)
|..
T Consensus 233 la~ 235 (330)
T 2pt7_A 233 LKS 235 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-08 Score=114.18 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=52.1
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEc-CccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~in-G~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
|++|+.. .+|+++||+|+||||||||+|+|+|... ...+|+|.++ |.++. .+..+..||++|...+.++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 4455543 4799999999999999999999999764 1458999987 87764 466778999999988899999999
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.7e-09 Score=105.74 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=56.7
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-cccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
+++|++++|+|+||||||||+++|+|... .|.|.++|...... .-.+..+|++|... +..||+|.+.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 67999999999999999999999999832 57899999763211 12356799998765 678999999886643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-09 Score=108.99 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+.+++|++++|+||||||||||+++|+|+++ .+.+++....... ....++|++|+...++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2556665543322 1345789999876666666655544
Q ss_pred H
Q 001957 249 F 249 (991)
Q Consensus 249 f 249 (991)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=102.78 Aligned_cols=118 Identities=17% Similarity=0.059 Sum_probs=81.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
+++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~------------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA------------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH------------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh------------------HH-HHHH
Confidence 678887 99999999999999999999999998765 788888776542100 00 0000
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432210 0 0123345
Q ss_pred hHHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001957 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEP-TsGLD~~t~~~i~~~L~~l 369 (991)
.+|.+++++...+++++|+||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5788899988889999999999 9999988887777776653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-08 Score=110.88 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=59.3
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCCCCCCCCHHHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESL 962 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Dih~p~~TVrEsL 962 (991)
.+|+++||+||||||||||+..|||.-.. ..|.|.++|.+.... .+ ++.+||++|.....|..||+|++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999999999998652 368999999875321 12 24589999999999999999999
Q ss_pred Hhh
Q 001957 963 LFS 965 (991)
Q Consensus 963 ~fs 965 (991)
.+.
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-08 Score=103.01 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~ 368 (991)
.+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-08 Score=119.80 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=92.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC--CHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM--TVRE 245 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (991)
.+++.+..+..++|.|++||||||+|++|.. .+..+ .|++.+.+.+.+..... .-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 4788889999999999999999999999875 33333 56676666654431111 00111221 2222
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
+...+.+... ....++.+ + ...++..|+.+..+-. ......+|
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn--~~~~~~~s 270 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYN--EKIAEADR 270 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHH--HHHHHHhh
Confidence 2222221100 00111111 1 2356667765432210 00113578
Q ss_pred hhHhHHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---hhccCceEEEEEecCC
Q 001957 326 GGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQN---IHINSGTAVISLLQPA 385 (991)
Q Consensus 326 GGqrqRv----------sia~~L~~~p~-vLllDEPTsGLD~~t~~~i~~~L~~l---~~~~~~t~ii~i~q~~ 385 (991)
|||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++ .+..|.++|++++.|.
T Consensus 271 ~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 271 MMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp TTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9998763 24555667787 89999999988843 33444555444 3334557777766665
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-08 Score=109.38 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=49.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCcc--cc-cceeeEEeccCC-------------
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TF-ARISGYCEQNDI------------- 951 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~~--tf-~r~~GY~eQ~Di------------- 951 (991)
+.+|++++|+|+|||||||||++|+|... ..+|+|.+ +|...... .+ .+..||+.|..-
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45799999999999999999999999876 45899999 88875421 12 135799999863
Q ss_pred ---CCCCCCHHHHHHhhh
Q 001957 952 ---HSPFVTIYESLLFSA 966 (991)
Q Consensus 952 ---h~p~~TVrEsL~fsA 966 (991)
++|.+|| |++.|..
T Consensus 244 ~~~l~~~~~~-~n~~~~~ 260 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD 260 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT
T ss_pred HHHHHHhccc-ccCcCCC
Confidence 5899999 9998863
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=105.50 Aligned_cols=30 Identities=40% Similarity=0.587 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999988887654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.5e-08 Score=112.08 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=59.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC-----------------Ce-------------------eeE
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----------------GY-------------------ITG 925 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~-----------------G~-------------------i~G 925 (991)
++|++|++.|.|| +++|+|+|||||||||++|++--.+ |. -+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4589999999999 9999999999999999998443210 01 168
Q ss_pred EEEEcCccCCccc----ccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 926 NITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 926 ~I~inG~~~~~~t----f~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
.++|||.+.+... ....+++++|.+...- .+..+.+.|
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ 169 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGL 169 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHH
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHH
Confidence 8999999976322 2334799999886543 356555555
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-08 Score=110.75 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=62.0
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-eEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.|++++ ++||.+++|+|||||||||||+.|+|... .. +|.|.+.|.|.. -.+++..+||+|..+.....+.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 466666 89999999999999999999999998753 12 588877777764 2456778999996443333455555
Q ss_pred HHhhhhccCCCCC
Q 001957 962 LLFSAWLRLSPEV 974 (991)
Q Consensus 962 L~fsA~LRlp~~v 974 (991)
|. +.||+.+++
T Consensus 202 l~--~~L~~~pd~ 212 (372)
T 2ewv_A 202 LR--AALREDPDV 212 (372)
T ss_dssp HH--HHTTSCCSE
T ss_pred HH--HHhhhCcCE
Confidence 44 556666666
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-08 Score=105.17 Aligned_cols=73 Identities=23% Similarity=0.154 Sum_probs=51.3
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC---cccccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---QETFARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
|....+|++++|+||||||||||+++|+|... .+.++|.... .....+..||++|+...++.+|+.+.+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 34567999999999999999999999999842 3455554322 12235678999998888888887666554
Q ss_pred hh
Q 001957 965 SA 966 (991)
Q Consensus 965 sA 966 (991)
.+
T Consensus 75 ~~ 76 (205)
T 3tr0_A 75 HA 76 (205)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-10 Score=122.62 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=55.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4799999999999 99999999999999999999874 6889998876532211 12345556542 234556
Q ss_pred CHHHHHHH
Q 001957 242 TVRETLAF 249 (991)
Q Consensus 242 TV~E~l~f 249 (991)
++.|++..
T Consensus 136 ~~iDeid~ 143 (278)
T 1iy2_A 136 VFIDEIDA 143 (278)
T ss_dssp EEEETHHH
T ss_pred EehhhhHh
Confidence 66666643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-08 Score=109.31 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=59.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccccceee--EEeccCCCCCCCCHHHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISG--YCEQNDIHSPFVTIYESL 962 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf~r~~G--Y~eQ~Dih~p~~TVrEsL 962 (991)
++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+ ..+++..| |++|.....|..||+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999854 246899999987532 12345556 999999999999999999
Q ss_pred Hhh
Q 001957 963 LFS 965 (991)
Q Consensus 963 ~fs 965 (991)
.+.
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.3e-10 Score=119.07 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=55.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5899999999999 99999999999999999999864 6889998876532111 12344555542 244556
Q ss_pred CHHHHHH
Q 001957 242 TVRETLA 248 (991)
Q Consensus 242 TV~E~l~ 248 (991)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6666664
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-07 Score=105.03 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=49.2
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCc--cccc-ceeeEEeccCCCC-----CCCCHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQ--ETFA-RISGYCEQNDIHS-----PFVTIYE 960 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~--~tf~-r~~GY~eQ~Dih~-----p~~TVrE 960 (991)
.+|++++|+|+||||||||+|+|+ ... ..+|+|.+ +|.+... ..+. +..||+.|+.-.. +.+|| |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 644 46899999 8977542 1222 2579999987543 78999 8
Q ss_pred HH--Hhh
Q 001957 961 SL--LFS 965 (991)
Q Consensus 961 sL--~fs 965 (991)
.| .|.
T Consensus 239 ~l~~~f~ 245 (302)
T 2yv5_A 239 EVRNYFR 245 (302)
T ss_dssp GGGGGCG
T ss_pred HHHHHHH
Confidence 87 554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.4e-08 Score=101.51 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCcCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La-G~~~~ 204 (991)
.+..+++|+.+++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 99754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-07 Score=103.70 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCc--ccccceeeEEeccCCCCC----CCCHHH
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQ--ETFARISGYCEQNDIHSP----FVTIYE 960 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~--~tf~r~~GY~eQ~Dih~p----~~TVrE 960 (991)
.+.+|+.++|+|+||||||||+|+|+|... ..+|+|.+ +|..... ..+....||+.|..-..+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 456899999999999999999999999765 46899998 8876431 122222799999986655 7899 8
Q ss_pred HH
Q 001957 961 SL 962 (991)
Q Consensus 961 sL 962 (991)
.|
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-07 Score=103.99 Aligned_cols=41 Identities=32% Similarity=0.435 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE-EECC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-TYNG 216 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I-~~nG 216 (991)
|=+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 358899999999999999999999999876543 4544 4444
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-07 Score=104.11 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..++++..+.. ..++|+++ +.+.+|+.++|+|+|||||||||++|+|-.... .|.|.+.|.+.
T Consensus 45 ~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCH
T ss_pred CeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccH
Confidence 3566777755531 23579999 999999999999999999999999999987643 68999999651
Q ss_pred ----------CcccccceeeEEeccCCC-CCCCCHHHHHH
Q 001957 935 ----------KQETFARISGYCEQNDIH-SPFVTIYESLL 963 (991)
Q Consensus 935 ----------~~~tf~r~~GY~eQ~Dih-~p~~TVrEsL~ 963 (991)
....+.+.++||.|.|.. ...+++.+...
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 112367788999998742 23344444433
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-07 Score=115.09 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=53.2
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC------cccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~------~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
+||+|+|||||||||++|+|.... ..+|.|+++|.+.. ...+++.+||++|+..+.+..||+|.+.+.+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998542 13799999998731 246788999999999999999999999986543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-08 Score=105.90 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----------ccceEEEEecC
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----------PQRTAAYISQH 234 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----------~~~~~~yv~Q~ 234 (991)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999998 999999998873211 13467888873
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.7e-08 Score=99.30 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=53.7
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
|++++|+|+||||||||++.|+++. .|.+.|+|.+.... +..||++|.+.+.+..||+|.+.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999732 46789998764321 24589998876667889999999876543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-07 Score=108.55 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=66.9
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.+|++++..+++|..++|+|+|||||||||++|+|-... .+|.|+|+|.+--+..-...+++..|..+.....|.++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 468899999999999999999999999999999998753 478999999762111123456777777664446788888
Q ss_pred HHhhhhccCCC
Q 001957 962 LLFSAWLRLSP 972 (991)
Q Consensus 962 L~fsA~LRlp~ 972 (991)
|. +.||+.|
T Consensus 326 l~--~~LR~~P 334 (511)
T 2oap_1 326 LR--AALRQRP 334 (511)
T ss_dssp HH--TTGGGCC
T ss_pred HH--HhhccCC
Confidence 77 5677654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-08 Score=103.11 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=56.4
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhhcc--cc---CCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCC
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagR--kt---~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~T 957 (991)
|+.+- |.+++|++++|+||||||||||+..|+|. .. ++.-.|.|+++|.... -.+.++++.|.-...|. |
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-H
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 55544 79999999999999999999999999993 32 1234578999997521 12345677776555555 8
Q ss_pred HHHHHHhh
Q 001957 958 IYESLLFS 965 (991)
Q Consensus 958 VrEsL~fs 965 (991)
|+|++.|.
T Consensus 90 ~~~~~~~~ 97 (231)
T 4a74_A 90 VLKHIYVA 97 (231)
T ss_dssp HHHTEEEE
T ss_pred HhhcEEEE
Confidence 88877654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.8e-07 Score=93.97 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=44.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCC--CCCCHHHHHHhh
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFS 965 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~--p~~TVrEsL~fs 965 (991)
.++|+++||+|+||||||||+++|+|.... .++|+.|++.+. +.+|++|.+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 378999999999999999999999987431 469999999875 678999987764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-07 Score=105.20 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=37.5
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
++.+|+|+++.+ +|+|+|||||||||+.|+|.... ..+| |.++|.+..+..-.+..+|+.|.+-..+.+||.
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchh
Confidence 457899999988 99999999999999999986321 3467 888887754322246689999998888899999
Q ss_pred HHHHhhhh
Q 001957 960 ESLLFSAW 967 (991)
Q Consensus 960 EsL~fsA~ 967 (991)
|++-|...
T Consensus 82 Dt~g~~~~ 89 (301)
T 2qnr_A 82 DTPGYGDA 89 (301)
T ss_dssp EEC-----
T ss_pred hhhhhhhh
Confidence 88877543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.8e-08 Score=107.98 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=57.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccccceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf~r~~GY~eQ~Dih~ 953 (991)
..+|++||..+++|+.++|+|+||||||||++.|+|... ...|+|.|.|..... ...++.+||+.|.....
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 357999999999999999999999999999999998754 235788888876431 12456789999987665
Q ss_pred C
Q 001957 954 P 954 (991)
Q Consensus 954 p 954 (991)
+
T Consensus 120 ~ 120 (337)
T 2qm8_A 120 I 120 (337)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-07 Score=108.67 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=45.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
..|+|||+.+++ +++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 349999999999 9999999999999999999999765 35789999998854
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.9e-08 Score=99.42 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=50.1
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAF 249 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (991)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 77889987764321 11245778887655556666666654
Q ss_pred H
Q 001957 250 S 250 (991)
Q Consensus 250 ~ 250 (991)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-08 Score=102.16 Aligned_cols=37 Identities=32% Similarity=0.256 Sum_probs=22.9
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhh-ccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa-gRk 918 (991)
+-.++||+.+++|++++|+||||||||||++.|+ |..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999 874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=89.89 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~ 370 (991)
...|++++.+|.++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999988887654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.4e-07 Score=94.13 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=43.2
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEecc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQN 949 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~ 949 (991)
|+.++|+|+||||||||+++|+|... .+| |.++|+...+ ...++.+||+.|.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 78899999999999999999999864 256 8888887643 3467889999997
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-07 Score=96.52 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc--cccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~--tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.++|++++|+|+||||||||+++|+|+. |.+.++|...... .-.+..||+.|+....+.+++.|.+....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 4689999999999999999999999875 6889998775321 11235699999888888889999887654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-06 Score=99.50 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+||.+++++|||||||||||++|+|..... -.|.|...+.|.. -.+....+|+.|..+.....|..++|. +.||
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~~La--~aL~ 194 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSEALR--SALR 194 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHHHHH--HHTT
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHHHHH--HHhh
Confidence 67899999999999999999999999875310 1345555555543 234455689999988888899999765 6677
Q ss_pred CCCCC
Q 001957 970 LSPEV 974 (991)
Q Consensus 970 lp~~v 974 (991)
+.|++
T Consensus 195 ~~Pdv 199 (356)
T 3jvv_A 195 EDPDI 199 (356)
T ss_dssp SCCSE
T ss_pred hCcCE
Confidence 76664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=96.88 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC-------C-CeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH---HHHH
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPT-------L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR---ETLA 248 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~-------~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 248 (991)
.++|+|+||||||||+|.|+|..... . ..+|.|.++|.++. ...+.|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986411 0 23799999986542 123445554422 11121 1111
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
........-.-.+ . .+.+.. .......+..+++.+++.+..--.|+|. ...+|+|+
T Consensus 254 ~~~~aD~il~VvD-------------~---s~~~~~-------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S---TFSENL-------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEE-------------T---TSCHHH-------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEE-------------C---CCCcch-------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 1100000000000 0 000000 0001112345677777765443344443 34578888
Q ss_pred hHHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001957 329 KKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 329 rqRvsia----~~L-~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
++|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 9988887 554 334444 89999999999999999887654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-07 Score=107.72 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=52.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc--CCeeeEEEEEcCc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNITISGY 932 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt--~G~i~G~I~inG~ 932 (991)
.+.++||++.+. ++.+|+|||+.+ ||+|+|||||||||+.|+|... .| .|.+.+++.
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~~~ 69 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHRIK 69 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC----
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccCCc
Confidence 367788876552 245799999987 9999999999999999999864 33 233333332
Q ss_pred cCCcccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 933 ~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
+ ..-.+.+||+.|.+...+.+||.+++-|...
T Consensus 70 ~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 70 K---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp ----CCEEEEEECC------CEEEEEEECC-----
T ss_pred c---ceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 2 2234678999999888889999998887654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-06 Score=87.62 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=28.2
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
|||+.+++|++++|+|+||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999765
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-07 Score=105.61 Aligned_cols=82 Identities=17% Similarity=0.041 Sum_probs=60.0
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-------cccccceeeEEe------
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-------QETFARISGYCE------ 947 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-------~~tf~r~~GY~e------ 947 (991)
+.+|+++ . .+||.+++|+|||||||||||++|+|.... .+|+|.+.|.|.. |..+.+.+||..
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4568888 3 489999999999999999999999997642 3689999998853 223445566654
Q ss_pred ---ccC-CC-CCC----CCHHHHHHhhh
Q 001957 948 ---QND-IH-SPF----VTIYESLLFSA 966 (991)
Q Consensus 948 ---Q~D-ih-~p~----~TVrEsL~fsA 966 (991)
|+. +. .+. .|+++++.++.
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 643 21 333 69999998753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.1e-06 Score=95.90 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=29.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567777777777 8899999999999999999864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-06 Score=87.02 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=33.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7899999999 99999999999999999999987654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-07 Score=98.42 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=40.0
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-----------cccccceeeEEeccC
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-----------QETFARISGYCEQND 950 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-----------~~tf~r~~GY~eQ~D 950 (991)
..|.+ +++||+|||||||||||++|+|-.. ..+|+|.++|.+.. ....++.+|||+|..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 92 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDT 92 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEEE
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEee
Confidence 44556 7899999999999999999999765 34688899887752 123467789999964
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-06 Score=97.97 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=62.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c-----cceEEEE-ec
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P-----QRTAAYI-SQ 233 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~-----~~~~~yv-~Q 233 (991)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998876 789999887764311 1 3457888 67
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001957 234 HDNHIGEMTVRETLAFS 250 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (991)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555655677776654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-06 Score=87.85 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+++++|++++|+||||||||||+++|++++.++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-07 Score=102.30 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=57.9
Q ss_pred ccCc-eeeeeCCeEEEEeeccCCChhhhhhhhhccc----cCCeeeEE-EEEcCccCCcccc-cceeeEEeccCCCCCCC
Q 001957 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGN-ITISGYPKKQETF-ARISGYCEQNDIHSPFV 956 (991)
Q Consensus 884 L~~V-Sg~~~pG~ltALmG~SGAGKTTLldvLagRk----t~G~i~G~-I~inG~~~~~~tf-~r~~GY~eQ~Dih~p~~ 956 (991)
|+++ .|.+++|++++|+|+||||||||+..|++-. +.|...|. |+|+|... | .+.++|+.|..-..+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----~~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----FRPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----CCHHHHHHHHHTTTCCHH-
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----CCHHHHHHHHHHcCCCHH-
Confidence 6665 5899999999999999999999999999864 23333577 99999763 3 3456788876554444
Q ss_pred CHHHHHHhh
Q 001957 957 TIYESLLFS 965 (991)
Q Consensus 957 TVrEsL~fs 965 (991)
||+|++.|.
T Consensus 195 ~v~~ni~~~ 203 (349)
T 1pzn_A 195 EVLKHIYVA 203 (349)
T ss_dssp HHGGGEEEE
T ss_pred HHhhCEEEE
Confidence 777776654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-07 Score=97.17 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhh---ccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLa---gRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
++++++|+|+||||||||++.|+ |-.. ...|+|.++|.+.. ....+..+++.|+....|..||.|.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46899999999999999999999 7643 55789998887643 3345566777788778889999999976
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.2e-06 Score=91.63 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=34.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455788888889999999999999999999998887653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.90 E-value=3e-06 Score=88.03 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=38.2
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccC-CeeeEEEEEcCccCC
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKK 935 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~-G~i~G~I~inG~~~~ 935 (991)
.++|+++||+|+||||||||+++|+|.-.. |...|.|.++|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 589999999999999999999999998542 445788888888765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-06 Score=87.81 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.9
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc---cccceeeEEeccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND 950 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~---tf~r~~GY~eQ~D 950 (991)
.++|+||||||||||+++|+|... |.++|++.... ...+.+||+.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC
Confidence 579999999999999999999863 44555542111 3467789999975
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-06 Score=87.97 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=41.6
Q ss_pred eEEEEeeccCCChhhhhhhhhcccc-CCeeeEEEEEcCccCC------ccccc-ceee----EEeccCCCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPKK------QETFA-RISG----YCEQNDIHS 953 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt-~G~i~G~I~inG~~~~------~~tf~-r~~G----Y~eQ~Dih~ 953 (991)
+.+||+|+||||||||++.|+|.-. .|+-.|.|+++|++.. .++++ +.+| |+.|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 4799999999999999999998853 3566899999999832 23555 4678 788866543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7.7e-07 Score=97.70 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=35.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
..|++|++.++||++++|+|+||||||||+..|||...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999854
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=100.45 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=59.7
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSCC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCCC
Confidence 34589999999999999999999999999996 9998887777777765432 345677777788777878887533
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-06 Score=93.43 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCeeeEEE--------ECCeeCCCcc----ccceEEEE
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVT--------YNGHDMDEFV----PQRTAAYI 231 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La---G~~~~~~~~~G~I~--------~nG~~~~~~~----~~~~~~yv 231 (991)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 988777 89998 8998874321 12457788
Q ss_pred ecC
Q 001957 232 SQH 234 (991)
Q Consensus 232 ~Q~ 234 (991)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.4e-06 Score=93.97 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=27.6
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
++++..|.|| +++|+|+|||||||||++|.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 3578888999 99999999999999999998
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.5e-06 Score=85.38 Aligned_cols=38 Identities=29% Similarity=0.082 Sum_probs=25.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-07 Score=91.69 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE--EECCeeCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV--TYNGHDMD 220 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I--~~nG~~~~ 220 (991)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999986 3 6776 88887654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.2e-06 Score=97.54 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=54.3
Q ss_pred eEEEEeeccCCChhhhhhhhhccccC---C---eeeEEEEEcCccCCc------------------ccccceeeEE---e
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKTG---G---YITGNITISGYPKKQ------------------ETFARISGYC---E 947 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt~---G---~i~G~I~inG~~~~~------------------~tf~r~~GY~---e 947 (991)
.+++|.|+|||||||||+.|+|...+ + .-.|+|.|+|.+... ..|.+.++|+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 0 146889999988532 3466778888 6
Q ss_pred ccCCCCCCCCHHHHHHhh
Q 001957 948 QNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 948 Q~Dih~p~~TVrEsL~fs 965 (991)
|..-..+..||.|++.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 776667788999887764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.3e-06 Score=84.44 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=33.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.++|+++.+.. ..|++ +.+.+|..++|+|+||||||||++.|+|..
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567888877631 23666 678999999999999999999999999976
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.2e-07 Score=96.32 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=61.5
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc---cccceeeEEeccC-CCCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 956 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~---tf~r~~GY~eQ~D-ih~p~~ 956 (991)
..++++++..+++| ++|.||+|||||||+++|||.... |.|.|+|.+.... ...+.++|+.|.- .+.|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45789999999999 999999999999999999997542 6899999875321 2345677888764 456777
Q ss_pred CHHHHHHhhhh
Q 001957 957 TIYESLLFSAW 967 (991)
Q Consensus 957 TVrEsL~fsA~ 967 (991)
++.+.+.+-+.
T Consensus 107 ~~~Deid~~~~ 117 (274)
T 2x8a_A 107 IFFDEVDALCP 117 (274)
T ss_dssp EEEETCTTTCC
T ss_pred Eeeehhhhhhc
Confidence 77666655433
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=1e-05 Score=81.97 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n 215 (991)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 35666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=9.4e-06 Score=83.78 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=22.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+||.++||+||||||||||+++|+|..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999853
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=9.3e-06 Score=85.80 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc------ccc-------cceeeEEeccCCC
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETF-------ARISGYCEQNDIH 952 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~------~tf-------~r~~GY~eQ~Dih 952 (991)
+-++..++|.+++|+|+||||||||++.|+|. .|+|.++|.|... ... .+..||+.|...+
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l 85 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVT 85 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHH
Confidence 34455689999999999999999999999998 3678888887421 111 2346788876544
Q ss_pred CC
Q 001957 953 SP 954 (991)
Q Consensus 953 ~p 954 (991)
.+
T Consensus 86 ~~ 87 (230)
T 2vp4_A 86 LT 87 (230)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=2.3e-05 Score=90.15 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=47.0
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
-++|+..+++|..++|+|++||||||||++|+|.+. .|+++|.. |....+|+++|.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~ 203 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecC
Confidence 468999999999999999999999999999998754 45677643 4556678888765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.2e-06 Score=89.79 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.5
Q ss_pred ceeecce-EEEeeCchhhhhccccccceeeccCceeeeeC---CeEEEEeeccCCChhhhhhhhhccc
Q 001957 855 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 855 ~l~f~dv-~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~p---G~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+.++|+ ++.++ +...+|+|||+.+++ |+.++|+|+|||||||+.+.||++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778898 77651 123579999999999 9999999999999999999999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=2e-06 Score=97.50 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=53.4
Q ss_pred ccCceeeeeC--CeEEEEeeccCCChhhhhhhhhccccCCeee----EEEEEc----CccC--CcccccceeeEEeccCC
Q 001957 884 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITIS----GYPK--KQETFARISGYCEQNDI 951 (991)
Q Consensus 884 L~~VSg~~~p--G~ltALmG~SGAGKTTLldvLagRkt~G~i~----G~I~in----G~~~--~~~tf~r~~GY~eQ~Di 951 (991)
.+.|+..+++ |+.+||+|+||||||||+++|+|... ... |.|+++ |.+. ....+ +.++|+.|...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 5678999999 99999999999999999999999864 345 777764 4332 12334 44788877543
Q ss_pred CCCCCCHHHHHH
Q 001957 952 HSPFVTIYESLL 963 (991)
Q Consensus 952 h~p~~TVrEsL~ 963 (991)
. ...|++|+|.
T Consensus 235 ~-~~~t~~~nl~ 245 (365)
T 1lw7_A 235 D-YAVRHSHKIA 245 (365)
T ss_dssp H-HHHHHCSSEE
T ss_pred H-HHHhccCCEE
Confidence 2 2345555443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.8e-07 Score=106.41 Aligned_cols=49 Identities=37% Similarity=0.570 Sum_probs=42.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 221 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4789999999999 99999999999999999999864 5788999877643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-06 Score=88.81 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=43.1
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEE--EEcCccCCcccccceeeEEec
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPKKQETFARISGYCEQ 948 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I--~inG~~~~~~tf~r~~GY~eQ 948 (991)
++.++...++|++++|+|+||||||||++.||++-. ..|.+ +++|..... ...+..||.+|
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~-~~~~~~~~~~~ 77 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRH-GLNRDLSFKAE 77 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTT-TTTTTCCSSHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhh-HhhcccCcChH
Confidence 445556668999999999999999999999999853 13444 888876532 22333455544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=81.74 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|.+++|+|+||||||||++.|++.-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999999986
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.3e-06 Score=95.83 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=59.2
Q ss_pred eeccCceeeeeCC-------eEEEEeeccCCChhhhhhhhhccccC--CeeeEEEEEcCccCCc--cc-ccceeeEEecc
Q 001957 882 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ--ET-FARISGYCEQN 949 (991)
Q Consensus 882 ~lL~~VSg~~~pG-------~ltALmG~SGAGKTTLldvLagRkt~--G~i~G~I~inG~~~~~--~t-f~r~~GY~eQ~ 949 (991)
.++++++..+++| ..++|.||+|+|||||+++|||.... -+.+|.+..+|..... .. -++.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4577888888776 78999999999999999999997511 1356666665544221 11 24578999998
Q ss_pred CCCCCCCCHHHHHHh
Q 001957 950 DIHSPFVTIYESLLF 964 (991)
Q Consensus 950 Dih~p~~TVrEsL~f 964 (991)
|.+.+ |+.|.|..
T Consensus 112 ~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 112 HRLNK--AVEELLYS 124 (334)
T ss_dssp GGCCH--HHHHHHHH
T ss_pred hhcCH--HHHHHHHH
Confidence 87776 89999954
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.8e-06 Score=89.35 Aligned_cols=39 Identities=41% Similarity=0.490 Sum_probs=36.3
Q ss_pred ceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 165 LTILKDVSGVIKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 165 ~~iL~~vs~~i~~---Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+|+|+|+.|++ |+.++|+|+|||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999 99999999999999999999999754
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.58 E-value=6.6e-06 Score=88.31 Aligned_cols=63 Identities=21% Similarity=0.095 Sum_probs=47.2
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhh---ccccCCeeeEEEE--------EcCccCC----cccccceeeEEe
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKK----QETFARISGYCE 947 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa---gRkt~G~i~G~I~--------inG~~~~----~~tf~r~~GY~e 947 (991)
++++.+ ++|..+||+|+|||||||++++|| |-.. +.+|+|. .+|.+.. ...+++.+||+.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 344444 789999999999999999999999 5543 4678998 8888763 234677889998
Q ss_pred ccC
Q 001957 948 QND 950 (991)
Q Consensus 948 Q~D 950 (991)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 865
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=81.00 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
...-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999888754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.7e-06 Score=83.10 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=46.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-cc-cceeeEEeccCCCCCCCCHHHHHHh
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TF-ARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-tf-~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
.+|.+++|+|+||||||||++.|+++. |.+.++|...... .. ++..|+..|.....+.+++.|.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 74 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 74 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHH
Confidence 579999999999999999999999874 5678887664321 01 1235777665444555667776543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=2.1e-05 Score=83.00 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
..++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4478999999999999999999999997 47788887764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=79.81 Aligned_cols=57 Identities=7% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHhhccCceEEEEE
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllD-EPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i 381 (991)
..+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..+|+..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 468999998876 55556788889999 99999999988888888876542 45555554
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.51 E-value=3.8e-05 Score=77.50 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=29.1
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
++++..|.|| +++|+|+||||||||+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 6889999999 999999999999999999976
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=3e-05 Score=78.58 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+|++++|+||||||||||++.|++.... ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999987532 1345554433
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.1e-05 Score=74.67 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=44.7
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE--EEEEcCccCCcccccceeeEEeccCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG--NITISGYPKKQETFARISGYCEQNDIH 952 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G--~I~inG~~~~~~tf~r~~GY~eQ~Dih 952 (991)
...|+++ +|+.++|+|++|+|||||+++|++.... .| .+++++.......|......+==+|++
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCCGGGGGCSEEEEESTT
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHHHHHhCCCEEEEeCcc
Confidence 4457776 8999999999999999999999997542 35 788888775443443333333334443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.49 E-value=4.6e-05 Score=79.09 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.8e-05 Score=79.99 Aligned_cols=37 Identities=30% Similarity=0.190 Sum_probs=24.8
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
-.++|||+.++||..++|+|+|||||||+...||++-
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999999999999999765
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.46 E-value=3.3e-05 Score=79.69 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999875
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=82.95 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCeeeEEE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVT 213 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG--~~~~~~~~~G~I~ 213 (991)
..+|+++++.++ .++|+|++||||||||+.|+| +++.. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 458999999998 899999999999999999999 44554 55444
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.43 E-value=2.4e-05 Score=80.80 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=34.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777776544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.6e-05 Score=77.16 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 5567776544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.42 E-value=1.9e-05 Score=89.66 Aligned_cols=44 Identities=36% Similarity=0.321 Sum_probs=39.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 214 (991)
..+|+++|+.+++|++++|+||||||||||+++|+|.+ .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999863 566654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.42 E-value=1.3e-05 Score=90.92 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=46.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di 951 (991)
..+|++++..+++|++++|.||||||||||+++|+|.. .|.+..-.-|. +.+....|+++|..+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhH
Confidence 46799999999999999999999999999999999853 34554412221 222334566666543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00062 Score=74.20 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999864
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.41 E-value=5.3e-05 Score=86.31 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=60.1
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc----------cCCeeeEEEEEcCccCCc--ccc--ccee---eEEeccCCC
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQ--ETF--ARIS---GYCEQNDIH 952 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk----------t~G~i~G~I~inG~~~~~--~tf--~r~~---GY~eQ~Dih 952 (991)
.+++|..++|+|++|||||||++.|+|.+ |.....|.+.++|..... +.| .+.+ .++.+.--+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999954 334578999999843210 011 2222 477777777
Q ss_pred CCCCCHHHHH--HhhhhccC
Q 001957 953 SPFVTIYESL--LFSAWLRL 970 (991)
Q Consensus 953 ~p~~TVrEsL--~fsA~LRl 970 (991)
.+..|..|.| .|-+.+|.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~ 115 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA 115 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 7888888888 88888884
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.001 Score=74.62 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.7
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 168 L~~vs-~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|+.+- +-+++|+++.|.||||||||||+..|+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999998874
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=2e-05 Score=97.26 Aligned_cols=69 Identities=16% Similarity=-0.016 Sum_probs=46.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+++|||+. |++++|+|||||||||||++|+|-...+ ..|. ..+. -++.+||+.| .++.+|++|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~------~vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGS------FVPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTC------CBSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCc------eeeh--hccceeeHHH---hhccCCHHH
Confidence 5679999998 9999999999999999999999853210 0122 1121 1346789988 567789999
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
+|.+
T Consensus 631 ~l~~ 634 (765)
T 1ewq_A 631 DLAG 634 (765)
T ss_dssp ----
T ss_pred HHHh
Confidence 8865
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=2.5e-05 Score=96.78 Aligned_cols=71 Identities=17% Similarity=0.046 Sum_probs=46.4
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+++||++. ++|++++|+|||||||||||++|+|-...+. .|...++. ...+|++.| .++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4579999999 9999999999999999999999998532111 23232222 235678776 466778888
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
++..
T Consensus 662 ~l~~ 665 (800)
T 1wb9_A 662 DLAS 665 (800)
T ss_dssp ----
T ss_pred HHHh
Confidence 7754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.37 E-value=4.9e-05 Score=80.07 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=47.6
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhhcccc-----CCeeeEEEEEcCccC-Ccc---cccceeeEEec
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-----GGYITGNITISGYPK-KQE---TFARISGYCEQ 948 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagRkt-----~G~i~G~I~inG~~~-~~~---tf~r~~GY~eQ 948 (991)
|+.+- |.+++|++++|+|+||||||||+..|++... +|.-.|.++|++... ... ...+..||.+|
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 55544 7899999999999999999999999999421 223468999999873 211 13344677765
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.37 E-value=4.8e-05 Score=79.30 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=38.8
Q ss_pred eeccCcee-eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg-~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..|+++++ .+++|++++|+|+||||||||+..|++... ...|.+.+.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~ 60 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE 60 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc
Confidence 34889884 999999999999999999999999997643 112455554444
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=75.97 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++|++++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999999999863
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=2.3e-05 Score=95.74 Aligned_cols=48 Identities=31% Similarity=0.250 Sum_probs=34.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 221 (991)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 3457889999999999999999999999765431 126777 56655443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.34 E-value=4e-05 Score=85.22 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=59.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccc-----cceeeEE-eccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETF-----ARISGYC-EQND 950 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf-----~r~~GY~-eQ~D 950 (991)
++++++..++|.+++++|++|+||||++..||+.-. ...|.|.+.+....+ ..+ +..++|+ .|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 368888899999999999999999999999998753 123577776655321 123 3456888 6776
Q ss_pred CCCCCCCHHHHHHhh
Q 001957 951 IHSPFVTIYESLLFS 965 (991)
Q Consensus 951 ih~p~~TVrEsL~fs 965 (991)
...|..+++++|...
T Consensus 173 ~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 173 NADPASVVFDAIKKA 187 (320)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 667778899998763
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.30 E-value=7.2e-05 Score=77.60 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
++|.+++|+||||||||||++.|+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.28 E-value=5.1e-05 Score=90.27 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=37.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-EEE-ECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVT-YNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~I~-~nG~~~ 219 (991)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 47899999999999999999999999999876 65 674 887654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00011 Score=85.47 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=58.5
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE-ecCCeEEEecCHH--HHHHH
Q 001957 340 GPALALFMDEISTGLDS-STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPRE--LVLEF 415 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~-~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil-L~~G~iv~~G~~~--~~~~~ 415 (991)
.++++||+||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..++++ +..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 37899999999887764 567778888877643 5677777776665554444444443 4567777766553 23322
Q ss_pred ----HHhcCCCCCCCCCHHHHHHHhc
Q 001957 416 ----FASMGFRCPKRKGVADFLQEVT 437 (991)
Q Consensus 416 ----f~~~G~~~p~~~~~adfl~~v~ 437 (991)
.+..|...|+ ...+++...+
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~ 295 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENV 295 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhc
Confidence 3334554443 4456655443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.24 E-value=2.2e-05 Score=87.15 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+++|+||||||||||+++|++++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=74.45 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|.+++|+|+||||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999874
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=72.57 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=28.5
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 168 L~~vs-~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 44432 56899999999999999999999988864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=75.80 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
-+|.+++|+||||||||||++.|+++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0017 Score=73.15 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 177 ~Ge--~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=8.8e-05 Score=76.83 Aligned_cols=47 Identities=32% Similarity=0.380 Sum_probs=39.2
Q ss_pred eccCce-eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 883 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 883 lL~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
-|+++. |.+++|++++|.|+||||||||+..||+ +.+ .+-+++++.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~ 55 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG 55 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC
Confidence 378877 5999999999999999999999999999 433 3567787765
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00013 Score=72.69 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=69.74 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=25.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
++.++.+.+| +++|+|||||||||||++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999873
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=69.44 Aligned_cols=35 Identities=40% Similarity=0.731 Sum_probs=25.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666665 89999999999999999999764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00017 Score=78.94 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=45.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+++.++||.|+||||||||.+.|++.-.. +| . . .+.+.+|.|+|.|.+. |+++++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~----~--~~~~~iv~~D~f~~~~-~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G----G--EKSIGYASIDDFYLTH-EDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G----G--GSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C----C--CceEEEeccccccCCh-HHHHHHhcc
Confidence 57889999999999999999999987642 11 1 1 3455667999999865 899999885
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00013 Score=82.22 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=31.2
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
.+++++..|.|| +++|+|+|||||||||++|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 378999999999 999999999999999999986
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00037 Score=69.60 Aligned_cols=42 Identities=33% Similarity=0.631 Sum_probs=33.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
++|.-++|+|.+|+|||||++.|+|.+. ..+..+.+.++|.+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 5788999999999999999999999752 23467889998865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=76.88 Aligned_cols=52 Identities=35% Similarity=0.443 Sum_probs=38.9
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di 951 (991)
.+++| .+||||++|||||||+|.|.|.+.. + +++ +.+.|..++.|+++|.+.
T Consensus 5 ~~r~~-~VaIvG~~nvGKSTLln~L~g~~~~--i-----~s~--~~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 5 KSYCG-FIAIVGRPNVGKSTLLNKLLGQKIS--I-----TSR--KAQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp CCEEE-EEEEECSSSSSHHHHHHHHHTCSEE--E-----CCC--CSSCCSSCEEEEEEETTE
T ss_pred cccCC-EEEEECCCCCCHHHHHHHHHCCCcc--c-----cCC--CCCcceeeEEEEEEECCe
Confidence 35666 7999999999999999999998631 1 122 234566788899988764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00017 Score=81.63 Aligned_cols=31 Identities=35% Similarity=0.700 Sum_probs=28.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
+++++..|.+| +++|.||||||||||+|+|+
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66788899999 89999999999999999987
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=71.34 Aligned_cols=39 Identities=28% Similarity=0.504 Sum_probs=32.6
Q ss_pred EEEEeeccCCChhhhhhhhhccccC-------C--eeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTG-------G--YITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~-------G--~i~G~I~inG~~~ 934 (991)
.++|+|++|||||||++.|+|.... | +.+|.|.++|.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999997632 2 2589999999764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0019 Score=70.76 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++++.-++|.||||+|||||+++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56788999999999999999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00013 Score=91.40 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=34.9
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+..+++|||+.+.+|++++|+|||||||||||+.+++-
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45789999999999999999999999999999999754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=71.10 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=32.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc-------cCC--eeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-------TGG--YITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-------t~G--~i~G~I~inG~~~ 934 (991)
-++|+|++|||||||++.|+|.. |.| ..+|.|.++|.+.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 57999999999999999999974 323 3479999999753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.01 E-value=5.6e-05 Score=84.81 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=41.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
..+++++++.+++|.+++|+|+||+|||||++.|++.+.+. .|+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 35778888888999999999999999999999999987654 5666555444
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0016 Score=74.90 Aligned_cols=37 Identities=27% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988654 45555433
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00013 Score=77.73 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=56.0
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccccceeeEEeccC-CCCCCCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQND-IHSPFVT 957 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf~r~~GY~eQ~D-ih~p~~T 957 (991)
.++++++..+++| ++|.||||+|||||++.|++... .|.|.++|..... ....+.++++.|.- .+.|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4588999999999 89999999999999999998764 5688898866321 11233456666653 3567777
Q ss_pred HHHHHHh
Q 001957 958 IYESLLF 964 (991)
Q Consensus 958 VrEsL~f 964 (991)
+.+.+..
T Consensus 113 ~~Deid~ 119 (254)
T 1ixz_A 113 FIDEIDA 119 (254)
T ss_dssp EEETHHH
T ss_pred Eehhhhh
Confidence 7666643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00041 Score=77.92 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00014 Score=78.81 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=56.8
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccccceeeEEeccC-CCCCCCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQND-IHSPFVT 957 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf~r~~GY~eQ~D-ih~p~~T 957 (991)
.++++++..+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.++++.|.- .+.|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5688999999999 88999999999999999998764 5788899876321 11233456666654 3567777
Q ss_pred HHHHHHh
Q 001957 958 IYESLLF 964 (991)
Q Consensus 958 VrEsL~f 964 (991)
+.+.+..
T Consensus 137 ~iDeid~ 143 (278)
T 1iy2_A 137 FIDEIDA 143 (278)
T ss_dssp EEETHHH
T ss_pred ehhhhHh
Confidence 7766643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00019 Score=80.70 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 220 (991)
+++..++|+|+||||||||+|.|+|.+.+. .|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecCC
Confidence 467899999999999999999999987765 677777665543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00086 Score=77.75 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC------C---CCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCCCHHHH
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDP------T---LKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~------~---~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
-.++|+|+||+|||||+|.|+|.... . -..+|.+.++|+++.-. ..++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998530 0 01379999999865211 112233343343333444444444
Q ss_pred HHH
Q 001957 247 LAF 249 (991)
Q Consensus 247 l~f 249 (991)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0001 Score=77.98 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=42.0
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... ...+++++-+.|.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 35544442 33578889999999976 7887766556665554332 2346677777776665566553
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00033 Score=83.00 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=29.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
.+++++..|.|| +++|+|+|||||||||+.|
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHH
Confidence 478899999999 9999999999999999998
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00034 Score=75.87 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=30.9
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~ 920 (991)
|+.+-+.+.+|++++|+|+||||||||+..|++-...
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4444457899999999999999999999999985443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00025 Score=70.62 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
.|.+++|+|+||||||||.+.||++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0002 Score=72.09 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee--EEEECCeeC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~nG~~~ 219 (991)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998743 24 555665444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0078 Score=67.67 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-+++|+++.|.||||+|||||...++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998887653
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00041 Score=73.17 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 167 ILKDVSGVIK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 167 iL~~vs~~i~---~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
=|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3777888877 9999999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0013 Score=65.55 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00031 Score=71.87 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=41.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
.+|+++|...+++. ++|+|++|+|||||++.|.+.+ |.|...+.+.++|..
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 46888888888885 7899999999999999999864 445567888888754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0025 Score=69.59 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00018 Score=79.80 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=40.8
Q ss_pred eeeccCceeeeeCCe------EEEEeeccCCChhhhhhhhhcccc---CCeeeEEEEEcCccCC
Q 001957 881 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKK 935 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~------ltALmG~SGAGKTTLldvLagRkt---~G~i~G~I~inG~~~~ 935 (991)
.+.|++++..|..+. ++||.|+||||||||+++|++.-. .+...+-|..+|+...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 455777777776665 999999999999999999988743 1223455777776654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00053 Score=67.32 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=25.0
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
++.+..|.|| +++|.||+|||||||||.|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566777 99999999999999999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00011 Score=76.85 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEE--------CCeeCCCc-c---ccceEEEEecC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTY--------NGHDMDEF-V---PQRTAAYISQH 234 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~--------nG~~~~~~-~---~~~~~~yv~Q~ 234 (991)
+.+++|+|||||||||++++|++.+ .++ +|++.. +|.++... . ..+.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---CcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 4689999999999999999999876 333 677766 56655321 0 12345666664
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00054 Score=77.00 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred ccCce--eeeeCCeEEEEeeccCCChhhhhhhhhccc--cCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 884 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 884 L~~VS--g~~~pG~ltALmG~SGAGKTTLldvLagRk--t~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
||.+- |.+.||.++.|.||+|+|||||+-.|+..- .+|. -++|++........++..|+..|+-......|+.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~---VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV---AAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe---EEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 66654 599999999999999999999999998763 2332 3688887644344667778887765555667888
Q ss_pred HHHHh
Q 001957 960 ESLLF 964 (991)
Q Consensus 960 EsL~f 964 (991)
|.+..
T Consensus 126 ~~l~~ 130 (356)
T 3hr8_A 126 QALEI 130 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0004 Score=87.28 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=32.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
..+++||++.+.+|++++|+|||||||||||+.++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999999999999999994
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00022 Score=85.10 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=39.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 217 (991)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 566666666 89999999999999999999999998765 788776653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00099 Score=67.53 Aligned_cols=50 Identities=32% Similarity=0.378 Sum_probs=27.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----CCCC-CeeeEEEECC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTL-KVSGTVTYNG 216 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~----~~~~-~~~G~I~~nG 216 (991)
.+|+++|+..++. .++|+|++|+|||||++.+.+.. .++. ...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3789999998887 56899999999999999999742 2221 1245666665
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=77.14 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=32.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777779999999999999999999998888654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=67.46 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
++|++++...++. -++++|.+|+|||||++.|.+.+ |.|...+.+.++|+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4578888887777 67999999999999999999864 556678889888854
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00035 Score=71.96 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
.++|.+++|+|+||||||||++.|++.-.. ..|+|.+.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 578999999999999999999999986421 1245555443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0004 Score=83.92 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=56.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
..++++++..+++|..+.|+||||+|||||+..||+.-.. ..-|.+.+++.+.. .+...++||+|-.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~--~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPED--ENMPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTC--TTSCEEEEEETTH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccc--ccCCcEEEEecch
Confidence 4678999999999999999999999999999999997542 23489999998864 5667789998754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00032 Score=72.72 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee--EEEECCeeC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~nG~~~ 219 (991)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChHH
Confidence 4578999999999999999999999998754 67 777775443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00051 Score=69.09 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=26.9
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+.+|+.++|.||+|+|||||+..|++..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00032 Score=83.48 Aligned_cols=42 Identities=36% Similarity=0.490 Sum_probs=33.6
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE-EE-EEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NI-TISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G-~I-~inG~~ 933 (991)
.+++|++++|+|+||||||||+++|||+... ..| .| +++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4689999999999999999999999998641 122 56 477755
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00056 Score=76.90 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=43.1
Q ss_pred cceeecceEEEeeCchhhhhccccccceeecc--------------CceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~--------------~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
..+.|+|+++.+|.. +..|+ |+...+.+|+..+|+|+||+|||||+..|+.-
T Consensus 132 ~ri~Fe~ltp~yP~e------------r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHANS------------RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCCS------------BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCCC------------ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 357899999887532 23455 78999999999999999999999999999864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00076 Score=77.09 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=45.7
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhh--ccc---cCCeeeEEEEEcCccC-Ccc---cccceeeEEec
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLA--GRK---TGGYITGNITISGYPK-KQE---TFARISGYCEQ 948 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLa--gRk---t~G~i~G~I~inG~~~-~~~---tf~r~~GY~eQ 948 (991)
|+.+- |.+++|++++|+|+||+|||||+..|+ +-. .+|.-.+.++|+|... .+. ..++..|+.+|
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 55543 899999999999999999999999554 332 1334457899999763 221 13455677665
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=68.25 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445556664 999999999999999999863
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00051 Score=70.24 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
.+|+++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47788888877775 689999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00074 Score=71.23 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred ccCceeeee---CCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 884 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 884 L~~VSg~~~---pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
|.+++.++. +|.+++|.|++||||||+++.|+.+-..| +++.....|
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~---~~~~~~~~p 62 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKD---YDVIMTREP 62 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTT---SCEEEECTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCceeecCC
Confidence 666777666 89999999999999999999999885422 355555554
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00094 Score=75.46 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=36.9
Q ss_pred eCCeE-EEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCccCCcccccceeeEEe
Q 001957 892 RPGVL-TALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYPKKQETFARISGYCE 947 (991)
Q Consensus 892 ~pG~l-tALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~~~~~tf~r~~GY~e 947 (991)
+.|.. +||+|++||||||||+.|+|... -+..+|.|.++|.+. .+.-..|+..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~ 238 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIR 238 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCS
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchh
Confidence 34554 99999999999999999999863 225689999999663 2333456544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=75.58 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=31.2
Q ss_pred EEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
-+||+|+||||||||++.|+|... ...+.|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 589999999999999999999852 12467999999986
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00032 Score=79.24 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=35.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45788888877 999999999999999998875433 444444443322110011223344444333345555
Q ss_pred HHHHH
Q 001957 245 ETLAF 249 (991)
Q Consensus 245 E~l~f 249 (991)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 55544
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0011 Score=66.91 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
.+++|+|+||||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998765432225778877654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00092 Score=68.80 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0008 Score=69.29 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.3
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+|.+++|+|+||||||||.+.|+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3588999999999999999999998765
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00092 Score=84.99 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=33.4
Q ss_pred eeeccCceeeeeC-------CeEEEEeeccCCChhhhhhhhhccc
Q 001957 881 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 881 ~~lL~~VSg~~~p-------G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+++||++.+.+ |++++|+|||||||||||+.| |-.
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 4579999999988 999999999999999999999 654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.013 Score=67.86 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=31.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4467777777999999999999999999998877754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=66.64 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999976
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.003 Score=69.78 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=32.2
Q ss_pred cCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 340 GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 340 ~~p~vLllDEPTsG-LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
.++.+||+||+-.- .+..+...+...+..+.. .+..+|++.+++..+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQK 144 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChHH
Confidence 45889999998762 344677778888877654 456677777665543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0056 Score=66.01 Aligned_cols=28 Identities=43% Similarity=0.666 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.++.-++|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.001 Score=69.98 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=35.5
Q ss_pred ccCc-eeeeeCCeEEEEeeccCCChhhhhhhhhcc-ccCCeeeEEEEEcCcc
Q 001957 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYP 933 (991)
Q Consensus 884 L~~V-Sg~~~pG~ltALmG~SGAGKTTLldvLagR-kt~G~i~G~I~inG~~ 933 (991)
|+++ .|.+++|++++|.|++|||||||+.-++.. ...| .+-+++++..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~ 61 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE 61 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC
Confidence 7777 899999999999999999999995544433 2222 2456677654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0011 Score=66.97 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++|.+++|.|++||||||+.+.|+..+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0025 Score=62.77 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=28.3
Q ss_pred EEEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
.++|+|++|+|||||++.|+|.+. .....|.+.++|+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 51 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 51 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcE
Confidence 589999999999999999998642 12245666666543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0011 Score=76.38 Aligned_cols=46 Identities=24% Similarity=0.080 Sum_probs=39.5
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999999876 67888776554
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=63.66 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=30.1
Q ss_pred EEEEeeccCCChhhhhhhhhccc---------cCCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK---------TGGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk---------t~G~i~G~I~inG~~ 933 (991)
-++|+|++|+|||||++.|+|.+ |.....|.+.++|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 58999999999999999999964 223456777777654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=66.98 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.2
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
+.+..|.|| +++|.|++||||||+|+.|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566777 99999999999999999773
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0043 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.00046 Score=77.94 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.0
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+++++++.+ +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45677887765 999999999999999998764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0017 Score=75.06 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=24.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
.|.+|.+++|+|||||||||||++|++
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 367789999999999999999999986
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0013 Score=74.08 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0023 Score=65.68 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=37.6
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh--HhhcCeEEEec
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~--~~lfD~vilL~ 399 (991)
+.|+.+|..+++.+..+|..+.++ ++.+++.....+.+.++.. .+..+|+.. +...+. ...||.+++|.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhcCcHhhCCEEEEEE
Confidence 678899999998888887654333 3345555555555544431 244555543 333333 56788888773
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0017 Score=65.15 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++|.+++|+|++||||||+.+.|+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999874
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0022 Score=72.90 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 171 vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678888999999999999999999997
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.023 Score=59.61 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
-++|+|++|+|||||++.|.|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4799999999999999999997654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0019 Score=72.17 Aligned_cols=27 Identities=30% Similarity=0.738 Sum_probs=23.2
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
.+..|.|| +++|+||||||||||||.|
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHH
Confidence 34456777 8999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0005 Score=76.82 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.6
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 167 ILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 167 iL~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+|+++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666677778877 99999999999999999999764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=62.82 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0012 Score=73.99 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.9
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.+++++++...++|..++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678889999999999999999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0028 Score=63.89 Aligned_cols=39 Identities=33% Similarity=0.319 Sum_probs=30.4
Q ss_pred eEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~ 933 (991)
.+++++|+||||||||++.|.+.. ..|..-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 478999999999999999999873 235556778877654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.002 Score=67.10 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=40.7
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEE--------cCccCCc----ccccceeeEEecc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITI--------SGYPKKQ----ETFARISGYCEQN 949 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~i--------nG~~~~~----~tf~r~~GY~eQ~ 949 (991)
+..+||+|+|||||||+.+.|+++-..- ..+|+|.. +|.+... ....+..|++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 4579999999999999999999874221 34588887 7776541 1345667888775
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.00 E-value=0.00082 Score=73.79 Aligned_cols=47 Identities=26% Similarity=0.147 Sum_probs=38.0
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 169 KD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 169 ~~-vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCC
Confidence 45 777766 9999999999999999999999998765 56777665543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0016 Score=77.52 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+++++..+ ||..+.|+||||+|||||+..||+.-. .-.|.|.++|.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 4567777777 899999999999999999999998752 456788777765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0015 Score=73.34 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+++..++|+|++|||||||||.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999999853
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0015 Score=69.81 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
..+++.+++|+|+|||||||+.+.|+..+.. +.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 3567889999999999999999999998642 4466666543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.023 Score=60.14 Aligned_cols=27 Identities=48% Similarity=0.620 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..-++|.||+|+|||||+++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999999865
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0018 Score=72.15 Aligned_cols=55 Identities=16% Similarity=-0.044 Sum_probs=30.7
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-cccccceeeEEeccCCC
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCEQNDIH 952 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-~~tf~r~~GY~eQ~Dih 952 (991)
..|.||+|+|||||+.+|++.-. +...|.|.++|.+.. .....+.++|++|.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF-GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS-CTTCCC------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCCCeEEecceeecccccccceeeeecccceE
Confidence 89999999999999999998532 223688899887643 11225677899887743
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0031 Score=64.55 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0099 Score=62.29 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe---------cCCchhHhhcCeEEEec
Q 001957 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---------QPAPETYDLFDDIILLS 399 (991)
Q Consensus 341 ~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~---------q~~~~~~~lfD~vilL~ 399 (991)
+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 578999999965 664 35555666665 4777777766 56788899999999985
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.038 Score=61.99 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0042 Score=62.39 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0033 Score=68.99 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=39.9
Q ss_pred CChhHhHHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHhhccCc-eEEEEEecCCchhHhhcCeE
Q 001957 324 ISGGQKKRVTTGEMMV--GPALALFMDEISTGLDSST-TFQIVNCLRQNIHINSG-TAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 324 LSGGqrqRvsia~~L~--~~p~vLllDEPTsGLD~~t-~~~i~~~L~~l~~~~~~-t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 4566666 78999998 7899876 56677777776543332 23333233333444444443
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.004 Score=62.03 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0028 Score=64.91 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..+++|.|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.005 Score=69.64 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.0
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~La 199 (991)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677777775 99999999999999999986
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0012 Score=73.61 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=35.2
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 165 LTILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3477778888888988 9999999999999999999987543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0039 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=26.0
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..++|.+++|+|++||||||+...|+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999999874
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0056 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997754
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0028 Score=69.43 Aligned_cols=46 Identities=22% Similarity=0.011 Sum_probs=37.5
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
++++.. +|+.++++|++|+||||+...||+.-. ...|.|.+.+...
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCc
Confidence 567777 899999999999999999999999853 1246788877664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0044 Score=68.23 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
++...++|++++++|++|+||||++..||+.-.. -.|.|.+.+..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D 141 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAAD 141 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccc
Confidence 3444678999999999999999999999998431 13566666654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0041 Score=64.24 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=32.3
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE--EEEEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG--NITISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G--~I~inG~~ 933 (991)
..++|.+++|+|++||||||+.+.|+++-. ...| -+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 357899999999999999999999998753 1124 56666543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0035 Score=64.09 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+++|.|+|||||||+.+.|+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0048 Score=67.60 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=25.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++|..++++|++|+||||++..||+.-
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0056 Score=69.60 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=34.9
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhccc---------cCCeeeEEEEEcCc
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---------TGGYITGNITISGY 932 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagRk---------t~G~i~G~I~inG~ 932 (991)
+-|.++.|..++|+|.+|+|||||++.|+|.+ |-....|.+.++|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34566788899999999999999999999983 23445788888774
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0048 Score=62.33 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.1
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
++|....+|..+.|+|++||||||+.+.||.+
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46677778999999999999999999999976
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0049 Score=60.79 Aligned_cols=33 Identities=24% Similarity=0.135 Sum_probs=25.8
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEE
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~ 928 (991)
+++|+|++||||||+.+.|+.+-..-.+.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 689999999999999999998743334555543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.017 Score=76.30 Aligned_cols=30 Identities=40% Similarity=0.565 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987643
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0066 Score=61.18 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0053 Score=62.90 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=20.1
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
+++|+|++||||||+.+.||+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0053 Score=72.07 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=40.1
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
..++++++.+.+| +.|.||+|+|||||++.||+... .|-|.++|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHH
Confidence 4588899999999 88999999999999999998764 46788988664
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0068 Score=60.33 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccccCC
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGG 921 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt~G 921 (991)
.|.++.|+|+|||||||+.+.|+.+-..+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35789999999999999999999875433
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0078 Score=60.40 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0053 Score=65.45 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=34.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
.++++.+ ..+++.++.|+|+|||||||+...|+.+...+ -+.++|-
T Consensus 21 ~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~----~~~~~~D 66 (253)
T 2p5t_B 21 SLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGN----IVIIDGD 66 (253)
T ss_dssp HHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTC----CEEECGG
T ss_pred HHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCCC----cEEEecH
Confidence 3455555 56788999999999999999999999875422 3455553
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0022 Score=71.66 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=33.3
Q ss_pred eeccCceeeeeCCeE--EEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~l--tALmG~SGAGKTTLldvLagRk 918 (991)
++|++++..+++|+. ++|+|++||||||+...||+..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468888888999988 9999999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.016 Score=64.72 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999998753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0078 Score=60.34 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0056 Score=68.65 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=51.6
Q ss_pred ccCce--eeeeCCeEEEEeeccCCChhhhhhhhhccc--cCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 884 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 884 L~~VS--g~~~pG~ltALmG~SGAGKTTLldvLagRk--t~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
|+.+- |.+++|.++.|.|++|+|||||+-.|+... .++ .-++|+.........++..|+-.|+-......|+.
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e 125 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHH
Confidence 55554 489999999999999999999977776542 222 23455554322223455667766554444556888
Q ss_pred HHHHhh
Q 001957 960 ESLLFS 965 (991)
Q Consensus 960 EsL~fs 965 (991)
+.+...
T Consensus 126 ~~l~~~ 131 (349)
T 2zr9_A 126 QALEIA 131 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.15 Score=59.88 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=31.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34566666669999999999999999999987776543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0089 Score=63.09 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0087 Score=62.94 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.006 Score=62.13 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
++.|+||||||||||++-|..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987553
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0098 Score=60.50 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999886
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999999765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0092 Score=63.69 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0065 Score=64.11 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|+|+|||||||+.+.||.+-
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0057 Score=61.36 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
-++|+|+||+|||||++.|+|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999994
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=58.27 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 001957 180 LTLLLGPPSSGKTTLLLAL 198 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~L 198 (991)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=60.13 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG 200 (991)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0084 Score=60.86 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0097 Score=60.58 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999976654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0084 Score=64.02 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.0
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEE
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 927 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I 927 (991)
+++|||+||||||||-..||++...-.+.+|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 78999999999999999999876433455554
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=59.23 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+..++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0091 Score=67.11 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=26.6
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..|++++..+. -+|++|.+|||||||++.|+|+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 35778877776 89999999999999999999975
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0087 Score=61.11 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
.++|+|++||||||+.+.||+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0094 Score=59.70 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
.+++|+|++|||||||+..|++.+.....--|.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 37899999999999999999987653211134555433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0061 Score=70.86 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.|++++|.++||+++.|.|++|+|||||+.-||+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999999999999999998764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0089 Score=59.55 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=62.09 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
-+||+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999975
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.037 Score=64.85 Aligned_cols=28 Identities=46% Similarity=0.726 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455669999999999999999998764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=59.86 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999764
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=63.85 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
..|.++.|.||||||||||.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999987653 23455554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=59.19 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.024 Score=56.92 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0051 Score=63.18 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.0051 Score=75.00 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=30.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
.+++|..+||+|++|||||||++.|++....-...|+| .+|..
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~ 47 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTT 47 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcc
Confidence 45789999999999999999999999654211123444 45544
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=67.60 Aligned_cols=35 Identities=40% Similarity=0.521 Sum_probs=29.1
Q ss_pred eeeceE--EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 167 ILKDVS--GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 167 iL~~vs--~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
-|+.+- +=+++|+++.|.||||+|||||...++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 466654 36999999999999999999998877654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0067 Score=62.26 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=21.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
+++|+|+|||||||+.+.|+.+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=59.54 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|.+++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999997653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=56.82 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=30.4
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
.--++++|.+|+|||||++.|.+.. |.|.....+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 3468999999999999999999875 344444466666554
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.013 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.9
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+++.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.022 Score=62.67 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=24.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
.|| .+|++|.+|||||||+|.|.|.+.
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~~ 35 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTKV 35 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCCc
Confidence 455 899999999999999999999874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=59.77 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=57.25 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=29.6
Q ss_pred EEEEeeccCCChhhhhhhhhccc-------cCCeeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-------TGGYITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-------t~G~i~G~I~inG~~~ 934 (991)
-++|+|.+|+|||||++-|.+.+ |.+.....+.++|...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 58999999999999999887764 2333344788888653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.0057 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.011 Score=59.20 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.+|.+++|+|++||||||+.+.||.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.047 Score=55.73 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe---------cCCchhHhhcCeEEEec
Q 001957 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---------QPAPETYDLFDDIILLS 399 (991)
Q Consensus 341 ~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~---------q~~~~~~~lfD~vilL~ 399 (991)
+.+++++||.-- +|.. +++.|+.++. .+..+|++-+ .+++++..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 3556666665 4778888766 66788999999998775
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.013 Score=61.57 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.8
Q ss_pred EEEEeeccCCChhhhhhhhhcccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt 919 (991)
-++|+|.+|+|||||++.|.|.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999864
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.014 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|.+++|.|++||||||+.+.|+-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998753
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.016 Score=62.19 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.03 Score=61.53 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=32.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
...+|+....+ .|+-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46899988887 8999999999999999999999885
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.019 Score=58.14 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~ 201 (991)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999986
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.025 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~ 201 (991)
-.++|+|.||+|||||+++|+|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999984
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.017 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|.+++|.|++||||||+.+.|+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999764
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=57.64 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=27.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGY 932 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~ 932 (991)
+++++|+||||||||+..|+..- ..|+--|-|..+++
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 78999999999999999998763 23444455554443
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.03 Score=54.48 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=27.0
Q ss_pred EEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
++++|.+|+|||||++.|.+... .......+.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE
Confidence 68999999999999999986542 22345666677654
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.019 Score=62.47 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=28.2
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+|.++.|+|+|||||||+...|+.+... |-+.||+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEec
Confidence 45789999999999999999999876432 3355555
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.014 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
+++|+|++||||||+.+.||.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999999999763
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.029 Score=56.90 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
-++|+|.+|+|||||++.|+|.+. .....+.+.++|.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 589999999999999999986531 12356778888765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.028 Score=56.24 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=30.2
Q ss_pred eEEEEeeccCCChhhhhhhhhccc--------cCCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK--------TGGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk--------t~G~i~G~I~inG~~ 933 (991)
--++++|.+|+|||||++.|.+.+ |.|.....+.++|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLS 68 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEE
Confidence 358999999999999999999886 335555666666543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.016 Score=58.06 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++..+.|+|++||||||+-..||.+-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999999664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 991 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-08 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-09 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-06 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-08 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-05 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-05 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-08 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-09 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-06 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-05 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-08 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-05 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-06 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-08 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-05 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-07 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-10 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-18 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-08 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-05 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 6e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 7e-05 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 4e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.001 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (286), Expect = 5e-29
Identities = 56/271 (20%), Positives = 98/271 (36%), Gaps = 54/271 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
T + ++ IK G +LLGP GKTT L +AG +PT G + + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +++ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P E+ + P VA F+
Sbjct: 216 LQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 52.9 bits (127), Expect = 5e-08
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE----GRIYFGDRDVTY 72
Query: 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
R Q+ P +T+YE++ F ++ P+ + + R
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR 116
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (260), Expect = 2e-25
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E L+ L L D G+ +SGGQ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 56.9 bits (137), Expect = 2e-09
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSPR 987
Q +T+ E+LL ++S K
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 125
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 103 bits (258), Expect = 4e-25
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 46/263 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
ILKD++ I+ G +G GK+TL+ + D T SG + +GH++ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 222 FVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
F+ I Q DN + TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD + I L ++ + ++ T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIE 226
Query: 400 DGQIVYQGPRELVLE---FFASM 419
+G IV G ++ + +
Sbjct: 227 NGHIVETGTHRELIAKQGAYEHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.3 bits (110), Expect = 7e-06
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 966
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 967 WLRLSPEVDSETRKVG 982
EV +
Sbjct: 117 PTATDEEVVEAAKMAN 132
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 1e-24
Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 57/280 (20%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT + + L ++I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATT-RSILELLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 432
D + ++S+G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 53.7 bits (129), Expect = 2e-08
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 929 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
++ + + T AR G Q+ T++ ++ L +P+ + + R
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.1 bits (244), Expect = 5e-23
Identities = 50/281 (17%), Positives = 93/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK+++ I+ G + + G SGKT+LL+ + G+L+ + G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ +T++G E +SGGQ+ R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFASMGFRCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.1 bits (104), Expect = 4e-05
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L ++ G + A+ G +G+GKT+L+ ++ G + G I
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 94
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.1 bits (239), Expect = 1e-22
Identities = 50/264 (18%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+ + +L+ ++ ++PG +T L+GP SGK+T+ L PT G + +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 222 FVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
P ++ A G + GL DT V + + +SGGQ++ V +
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ L +D+ ++ LD+++ Q+ L ++ S + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
G I G + ++E + +M
Sbjct: 225 EGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 6e-05
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+ F +V ++ ++ V L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 915 AG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
+ TGG + + Y + R Q ++ E++ + + +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPT 117
Query: 972 PEVDSETRK 980
E +
Sbjct: 118 MEEITAAAV 126
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.7 bits (235), Expect = 3e-22
Identities = 55/276 (19%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 Q--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ + +Y+ + M E L F A +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ L+Q G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVT 437
IV G EL K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 52.7 bits (126), Expect = 4e-08
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
++ Y + + E L F A S + E
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM 113
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.1 bits (234), Expect = 3e-22
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ + LK+V+ IK G ++GP SGK+T+L + PT G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPQRTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
++ ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ L++ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 56.4 bits (136), Expect = 2e-09
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 929 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980
+ + T R G+ Q P +T E++ + + E R+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 93.4 bits (232), Expect = 1e-21
Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 68/300 (22%)
Query: 153 NYLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
N L +I KR +LK VS + G + ++G SGK+T L + P+ G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 211 TVTYNGHDMDEFVPQ----------------RTAAYISQHDNHIGEMTVRETLAFSARCQ 254
+ NG +++ + + QH N MTV E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 115
Query: 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314
+ L++ RE+A YL +G+D A
Sbjct: 116 ----QVLGLSKHDARERA---------------------------LKYLAKVGIDERAQ- 143
Query: 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+ +SGGQ++RV+ + L DE ++ LD +++ ++Q
Sbjct: 144 ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEE 198
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
G ++ + + +I L G+I +G E + F + P+ + FL+
Sbjct: 199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 46.8 bits (111), Expect = 5e-06
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 941 RIS-----------GYCEQNDIHSPFVTIYESLLF 964
Q+ +T+ E+++
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 112
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 45/259 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+T VG E ISGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE---FFASM 419
G ++ +A
Sbjct: 216 TGSGKHNELVATHPLYAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
L +S +P + A G SG GK+T+ +L + T G IT I +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.4 bits (224), Expect = 8e-21
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 54/272 (19%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ + KD++ I G + +GP GK+TLL +AG T SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PQRTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ +VL L D +SGGQ++RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ + +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P EL + P + VA F+
Sbjct: 209 VAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 53.4 bits (128), Expect = 3e-08
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 938
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 939 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
A G Q+ P +++ E++ F L + + R
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR 110
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 89.5 bits (222), Expect = 2e-20
Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 47/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
R + L++++ I G+ L+G SGK+T+ + D G + +GHD+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 222 FVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + A +SQ+ + + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ +D DT++G E +SGGQ++R+ +
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + L +DE ++ LD+ + I L + + + ++ T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVV 223
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
DG IV +G +L +A +
Sbjct: 224 EDGIIVERGTHSELLAQHGVYAQL 247
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.3 bits (102), Expect = 7e-05
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 940
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVG 982
QN +++ R
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 88.2 bits (218), Expect = 3e-20
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 57/276 (20%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S+K L ++S ++ G ++LGP +GKT L +AG P SG + +G D+
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 220 DEFVPQR-TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P++ A++ Q+ + M V++ L F R + + ++
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRVLDT--- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ L ++ D +SGG+++RV +
Sbjct: 112 ------------------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARAL 142
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD T + + +H + V+ + E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
DG+++ G P E+ F P VA F+
Sbjct: 202 MDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 48.5 bits (115), Expect = 1e-06
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 942
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWL 968
+ QN P + + ++L F +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRM 99
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.8 bits (217), Expect = 7e-20
Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 59/280 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPQ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
R + Q +T E +AF +++ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ K+L + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ L + + G ++ + + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
Query: 395 IILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ +L G++V G P +L + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 53.9 bits (129), Expect = 2e-08
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 937
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 938 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
R G Q P +T +E++ F + + R
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 1e-19
Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ + V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L DE ++ LD + I+ + + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (101), Expect = 7e-05
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 934
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVG 982
R G Q D +I +++ + +V + G
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 5e-19
Identities = 49/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (123), Expect = 1e-07
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 977
Y Q ++ L + E+ ++
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND 108
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 83.8 bits (207), Expect = 1e-18
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ A + + E+TV E L A + + E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWI----------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + G +SGG+++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 58.0 bits (140), Expect = 9e-10
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 973
+ P +T+YE+L+ A+ R E
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 82.7 bits (204), Expect = 2e-18
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 48/221 (21%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + ++ + +++V + L A GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 111 -----------------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLL 141
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
A +D+ +D + +++ + + I G +IS
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 53.4 bits (128), Expect = 2e-08
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
+ + I +++ + L A L +E
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA 110
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.4 bits (206), Expect = 2e-18
Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+T ++++S +K G +LLGP GKTT L +AG +P+ G + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+V MDE + LD + + + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+++ G + G + V + P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 43.4 bits (102), Expect = 5e-05
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 936 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
+ Q+ P +T+Y+++ F LR P + + R
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 76.2 bits (187), Expect = 7e-16
Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 55/259 (21%)
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-AYISQH 234
+LLGP +GK+ L +AG + P G V NG D+ P+R ++ Q
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQE 294
++V +A+ R R + E+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------------- 110
Query: 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354
+ + D +SGG+++RV +V L +DE + +
Sbjct: 111 -------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
D T ++ LR + ++ + E L D++ ++ +G+IV +G + E
Sbjct: 158 DLKTKGVLMEELRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---E 213
Query: 415 FFASMGFRCPKRKGVADFL 433
F+ K VA+FL
Sbjct: 214 LFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.7 bits (100), Expect = 1e-04
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 949
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
P +++Y ++ + E D R++
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM 110
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 7e-06
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA 229
G I+ G +T + G +GKT + A+ +L F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ ++ A + + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEAN 296
G+ +
Sbjct: 137 GRGELSA 143
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.9 bits (103), Expect = 7e-05
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKN--RIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
++++ N KN I + +D + R + L + E L +
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LP----SFIKFYTNIFEDILNYLRIIPS--------KKRHLTILKDVSGVIKPGRLTLLL 184
I F + DI ++ + LK + I R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPSSGKTTLLLALAGKLD-PTLKVSGT 211
GP SGKTTL AL L V+
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLP 188
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 3/137 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244
+GKTTLL L L H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A E+ + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDVCADTMVGDEMI 321
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.001
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTA 228
G ++ G +T L G +GK+ L LA G Y + F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
+ + + A + + ++ + + I D + +Y
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 38.9 bits (89), Expect = 0.002
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYI 231
G ++ +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 232 S 232
Sbjct: 85 D 85
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202
+ G + L+ P +GK+ L L LA ++
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 37.6 bits (86), Expect = 0.004
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALA 199
G + L G +GKT L+
Sbjct: 20 GGGFFKDSIILATGATGTGKTLLVSRFV 47
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 991 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.76 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.76 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.75 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.73 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.72 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.72 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.7 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.7 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.67 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.67 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.67 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.66 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.66 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.66 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.6 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.6 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.6 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.55 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.4 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.39 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.73 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.31 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.66 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.19 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.05 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.01 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.79 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.69 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.64 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.61 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.51 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.47 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.44 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.42 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.41 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.36 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.26 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.21 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.16 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.09 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.07 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.01 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.99 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.98 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.97 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.88 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.77 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.76 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.68 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.68 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.65 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.62 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.62 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.59 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.58 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.52 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.42 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.42 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.4 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.38 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.37 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.34 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.32 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.26 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.24 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.22 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.18 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.09 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.09 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.07 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.04 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.03 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.94 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.93 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.92 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.89 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.89 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.89 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.89 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.82 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.74 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.73 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.72 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.71 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.71 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.68 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.68 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.62 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.61 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.61 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.58 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.49 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.46 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.43 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.43 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.41 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.41 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.38 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.37 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.37 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.37 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.28 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.25 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.23 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.18 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.17 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.1 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.08 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.05 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.02 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.99 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.98 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.97 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.96 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.95 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.85 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.75 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.66 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.53 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.51 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.42 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.32 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.3 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.3 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.28 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.25 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.23 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.22 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.2 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.14 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.12 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.99 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.92 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.91 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.86 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.83 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.81 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.81 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.77 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.67 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.64 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.56 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.52 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.5 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.49 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.45 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.34 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.31 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.28 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.23 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.21 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.11 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.1 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.07 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.96 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.92 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.89 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.66 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.53 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.53 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.51 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.45 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.34 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.29 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.28 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.24 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.21 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.18 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.13 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.13 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.09 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.08 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.08 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.07 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.03 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.98 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.91 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.89 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.86 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.83 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.81 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.8 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.66 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.64 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.62 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.6 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.59 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.47 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.44 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.4 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.33 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.3 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.29 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.2 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.15 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.13 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.03 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.96 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.93 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.87 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.84 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.83 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.63 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.63 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.62 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.59 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.58 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.57 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.53 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.5 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.49 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.46 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.37 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.35 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.31 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.22 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.15 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.14 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.13 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.1 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.03 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.03 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.97 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 88.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.9 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.84 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.84 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.79 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.77 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.68 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.62 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.59 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.54 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.53 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.52 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.36 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.32 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.23 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 88.21 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.19 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.13 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.09 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.07 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.02 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.01 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.96 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.81 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.79 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.67 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.64 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.62 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.61 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.55 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.28 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.24 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.21 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.1 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.03 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.97 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.85 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.84 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.84 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.76 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.75 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.62 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.53 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.42 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.36 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.21 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.19 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.89 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.76 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.46 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.43 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.42 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.39 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.09 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.96 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.94 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.51 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.49 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 84.39 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.2 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.91 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.84 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.62 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.52 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.48 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.42 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.15 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.47 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.39 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.17 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.16 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 82.02 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.78 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 81.67 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.53 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.48 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.3 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.19 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.14 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.02 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 80.9 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.64 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 80.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.21 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.18 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.5e-49 Score=413.52 Aligned_cols=206 Identities=25% Similarity=0.359 Sum_probs=175.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 46999999999999999999999999999999999999999 9999999999976554 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|.+++++... .+.+..++++|+.+||++.+| +++.+
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLN-----RYPAQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----SCTTT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhc-----CChhh
Confidence 999999987765421 112235678999999998776 45678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++.++.+.|+|+ ++|+.+++.++||||++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE-EeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997755666555 56788999999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+++|+++++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999984
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-49 Score=414.37 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=148.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|++||+++....+ +|.+|||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchhH
Confidence 56999999999999999999999999999999999999999 9999999999976654 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|++++++... .+.+..++++|+.++|++.+|.. ++.
T Consensus 90 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~-----~~~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRK-----PKA 130 (232)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCC-----hhh
Confidence 999999987654311 11223567899999999887754 568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.++.+.|+|+ ++|+.+++.++||||++|++|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987755655555 56789999999999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+++|+++++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999854
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.4e-48 Score=409.63 Aligned_cols=206 Identities=26% Similarity=0.351 Sum_probs=181.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.... .++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 46999999999999999999999999999999999999999 999999999875432 13679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+.+.++... .+.+..++++|+.+||++.+|.
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~--- 135 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNR--- 135 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTC---
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcC---
Confidence 999999999999988765421 1122356789999999987764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++++|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.+.|+|+ ++|+.+++.++||+|++
T Consensus 136 --~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 136 --KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp --CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEE-EcCCHHHHHHhCCEEEE
Confidence 557899999999999999999999999999999999999999999999987655555555 57789999999999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|++++.|+++++.
T Consensus 213 m~~G~iv~~G~~~el~ 228 (240)
T d1g2912 213 MNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.1e-48 Score=409.45 Aligned_cols=219 Identities=21% Similarity=0.281 Sum_probs=187.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~ 237 (991)
.+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.... .+|.+|||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 356999999999999999999999999999999999999999 999999999985422 14679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
+|.+||+||+.|+++.++... .+.+..++++|+.+||++.+|.
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~--- 136 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNH--- 136 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTS---
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhC---
Confidence 999999999999987654321 0122356789999999887764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++.+.|+|+ ++|+..++.++||+|++
T Consensus 137 --~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 137 --FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGV 213 (242)
T ss_dssp --CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEE-EECCHHHHHHhCCEEEE
Confidence 556899999999999999999999999999999999999999999999987655655554 56788999999999999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
|++|+|++.|+++++.+ .|.+..+++|+
T Consensus 214 m~~G~iv~~g~~~el~~--------~P~~~~~~~fl 241 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD--------NPVSIQVASLI 241 (242)
T ss_dssp EETTEEEEEECHHHHHH--------SCSSHHHHHHH
T ss_pred EECCEEEEEcCHHHHHh--------CCCCHHHHhcc
Confidence 99999999999999853 56655556554
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.2e-48 Score=403.90 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=185.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ ++.+|||+|+..+++.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 899999999999999999999999999999999999999 9999999999987654 367999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+.++... ...++++++.++|.+..|.. +..||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRN-----PLTLS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSC-----GGGSC
T ss_pred HHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCC-----hhhCC
Confidence 9999987654321 11356678899999887754 56899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++.+.|+ +.++|+..++.++||||++|++|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ti-i~vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV-LHITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEE-EEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999877555555 445778899999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 406 QGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
+|+++++. ..|.+.-+++|+
T Consensus 209 ~g~~~el~--------~~P~~~~v~~fl 228 (229)
T d3d31a2 209 VGKPEEIF--------EKPVEGRVASFV 228 (229)
T ss_dssp EECHHHHH--------SSCCTTHHHHHH
T ss_pred EcCHHHHH--------hCCCCHHHHhcc
Confidence 99999985 346555555553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-48 Score=408.15 Aligned_cols=206 Identities=24% Similarity=0.324 Sum_probs=181.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (991)
..++|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.+|||+|+..+
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l 93 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccccc
Confidence 456999999999999999999999999999999999999998 9999999999876543 2569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+++.++.... +....++++|+.+||++.+|
T Consensus 94 ~~~~tv~eni~~~l~~~~~~~~----------------------------------~~~~~v~~~L~~vgL~~~~~---- 135 (240)
T d3dhwc1 94 LSSRTVFGNVALPLELDNTPKD----------------------------------EVKRRVTELLSLVGLGDKHD---- 135 (240)
T ss_dssp CTTSBHHHHHHHHHHTTTCCTT----------------------------------HHHHHHHHHHHHHSTTTTTS----
T ss_pred CCCccHHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhh----
Confidence 9999999999999887654211 12234677899999998776
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+++++|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.+.|+|+ ++|+..++..+||||++
T Consensus 136 -~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~v 213 (240)
T d3dhwc1 136 -SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAV 213 (240)
T ss_dssp -SCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEE-EcCCHHHHHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999997755555555 57889999999999999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|+|++.|+++++
T Consensus 214 l~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 214 ISNGELIEQDTVSEV 228 (240)
T ss_dssp EETTEEEEEEETTTT
T ss_pred EECCEEEEECCHHHH
Confidence 999999999999987
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-46 Score=391.74 Aligned_cols=205 Identities=24% Similarity=0.299 Sum_probs=172.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc-------ceEEEEecCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQHDN 236 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d~ 236 (991)
...+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~ 93 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence 456999999999999999999999999999999999999999 99999999999876432 45999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
++|.+||+||+.|+...+..+... ..+....+.++|+.+||++ .+|
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~L~~~~~~-- 140 (230)
T d1l2ta_ 94 LIPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFAN-- 140 (230)
T ss_dssp CCTTSCHHHHHHHHHHTCCSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTT--
T ss_pred hCcCccHHHHHhHHHHHhccCCCC-------------------------------HHHHHHHHHHHHHhhchhhhhhc--
Confidence 999999999999998765332110 0011223566889999975 344
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.+|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.+.|+|+++ |+.+++ ++||||
T Consensus 141 ---~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vT-Hd~~~a-~~~drv 215 (230)
T d1l2ta_ 141 ---HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT-HDINVA-RFGERI 215 (230)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEEC-SCHHHH-TTSSEE
T ss_pred ---CChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEC-CCHHHH-HhCCEE
Confidence 456789999999999999999999999999999999999999999999999875566666654 566554 899999
Q ss_pred EEecCCeEEEecCH
Q 001957 396 ILLSDGQIVYQGPR 409 (991)
Q Consensus 396 ilL~~G~iv~~G~~ 409 (991)
++|++|+|+++|+.
T Consensus 216 ~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 IYLKDGEVEREEKL 229 (230)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEeccC
Confidence 99999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-44 Score=382.66 Aligned_cols=208 Identities=25% Similarity=0.296 Sum_probs=181.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 241 (991)
+++||+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+.. .++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 456999999999999999999999999999999999999999 999999999986532 247799999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|...+++... .+....++.+++.++|.+..|..+
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 131 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRV----- 131 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBG-----
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhh-----
Confidence 99999999887654321 011234567889999998887655
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||+||++|+++|++|||||||+|||+.++.+|.+.|+++++ .|.|+|+ ++|..+++..+||||++|++|
T Consensus 132 ~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 132 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999875 4666655 567889999999999999999
Q ss_pred eEEEecCHHHHHHH
Q 001957 402 QIVYQGPRELVLEF 415 (991)
Q Consensus 402 ~iv~~G~~~~~~~~ 415 (991)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEcCHHHHHhc
Confidence 99999999999764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.1e-45 Score=384.55 Aligned_cols=210 Identities=25% Similarity=0.349 Sum_probs=179.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
||||+++ +|+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ ++.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999999 9999999999987655 467999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
|+.+.. . +. +.+..++++++.+||.+.+|. ++.+|||||
T Consensus 93 ~~l~~~--~----------~~------------------------~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RV------------------------ERDRRVREMAEKLGIAHLLDR-----KPARLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HH------------------------HHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHH
T ss_pred hhhccc--C----------HH------------------------HHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHH
Confidence 975321 1 00 112346788999999887764 557899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.+.|+|+ ++|...++.++||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEE-EeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999998755666555 5678889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 409 RELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999963 33445666653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-44 Score=386.96 Aligned_cols=207 Identities=24% Similarity=0.334 Sum_probs=176.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----------------cceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----------------QRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----------------~~~~ 228 (991)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999998 9999999999864321 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC
Q 001957 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (991)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (991)
|||+|++.+++.+||+||+.++.. ..+.. + .+....+.++++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------HDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC-H---------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcC
Confidence 999999999999999999999753 22211 0 011224567899999
Q ss_pred CcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 308 L~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
|.+..+ ++++.+|||||||||+|||+|+.+|++|||||||+|||+.++.+|++.|+++.+ .|.| |+.++|+.++
T Consensus 138 l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~t-il~vtHdl~~ 211 (258)
T d1b0ua_ 138 IDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKT-MVVVTHEMGF 211 (258)
T ss_dssp CCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCC-EEEECSCHHH
T ss_pred Cchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCc-eEEEeCCHHH
Confidence 976432 245678999999999999999999999999999999999999999999999875 4655 5556789999
Q ss_pred hHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 388 ~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
+..+||||++|++|+|+++|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999853
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2e-44 Score=383.11 Aligned_cols=204 Identities=22% Similarity=0.323 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (991)
+++|+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.....+ ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence 56999999999999999999999999999999999999999 99999999999765432 348999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (991)
+||+||+.+++........ ....++.+++.+ +|.+..|..+
T Consensus 96 ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~--- 137 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred ccHHHHHHHHHHhcCCHHH-----------------------------------HHHHHHHHHHHhhChHHHHhCch---
Confidence 9999999987754322110 011233445555 5766666544
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++++ .|.|+|+ ++|+.+++.++||||++|+
T Consensus 138 --~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~-~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILL-VEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEE-EESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEE
Confidence 57999999999999999999999999999999999999999999999875 4655555 5678899999999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-44 Score=381.26 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+||||.|++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+ +..
T Consensus 16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~ 91 (241)
T d2pmka1 16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVL-LNR 91 (241)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCC-TTS
T ss_pred cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEeccccc-CCc
Confidence 45999999999999999999999999999999999999998 9999999999987654 4689999998754 568
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|||.|+.... ..+. +....+.. ...-....++...+|.+|. ..
T Consensus 92 Ti~eNi~~~~~~~----~~~~---~~~~~~~~--------------------------~~~~~i~~~~~~~~t~i~~-~g 137 (241)
T d2pmka1 92 SIIDNISLANPGM----SVEK---VIYAAKLA--------------------------GAHDFISELREGYNTIVGE-QG 137 (241)
T ss_dssp BHHHHHCTTSTTC----CHHH---HHHHHHHH--------------------------TCHHHHTTSTTGGGSBCST-TT
T ss_pred cccccccccCccc----cHHH---HHHHHHHH--------------------------hhHHHHHhhhcchhhhcCC-CC
Confidence 9999999864211 1111 11111100 0011233567788999985 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|++ +|... ..+.||+|++|++|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l~-~~~~~D~i~vl~~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII-AHRLS-TVKNADRIIVMEKG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEE-CSSGG-GGTTSSEEEEEETT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEE-ECCHH-HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999753 5666665 45444 55789999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+|+++|+++++++
T Consensus 214 ~Iv~~G~~~ell~ 226 (241)
T d2pmka1 214 KIVEQGKHKELLS 226 (241)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-44 Score=384.17 Aligned_cols=211 Identities=23% Similarity=0.379 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|++||+++..... ++.++||+|++.+| ..
T Consensus 27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 102 (251)
T d1jj7a_ 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GR 102 (251)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SS
T ss_pred CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-Cc
Confidence 46999999999999999999999999999999999999998 9999999999977654 36899999988765 57
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+...... .+ +.....+. ........+|++..+|.++ +.+
T Consensus 103 tv~eni~~g~~~~~~---~~---~~~~~~~~--------------------------~~~~~~i~~l~~g~~~~i~-~~~ 149 (251)
T d1jj7a_ 103 SLQENIAYGLTQKPT---ME---EITAAAVK--------------------------SGAHSFISGLPQGYDTEVD-EAG 149 (251)
T ss_dssp BHHHHHHCSCSSCCC---HH---HHHHHHHH--------------------------HTCHHHHHTSTTGGGCBCC-SSC
T ss_pred chhhhhhhhhcccch---HH---HHHHHHHH--------------------------HHHHHHHHhccccchhhHh-ccC
Confidence 999999997432110 00 00000000 0011224467788899987 456
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+.+|+||+||||||+||+.+..+|++.|+++.+..++|+|++ +|... ..+.||+|++|++|
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~i-tH~l~-~~~~aDrI~vl~~G 227 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI-TQHLS-LVEQADHILFLEGG 227 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEE-CSCHH-HHHTCSEEEEEETT
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEE-eCCHH-HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999876556666665 45554 55779999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+|+++|+++++++
T Consensus 228 ~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 228 AIREGGTHQQLME 240 (251)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999974
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.2e-44 Score=384.29 Aligned_cols=219 Identities=25% Similarity=0.338 Sum_probs=180.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (991)
+++|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++....++ +.++|++|+..+++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 56999999999999999999999999999999999999999 99999999999776543 348999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.++...++.... ..+.. .... ++ ..+....++.+++.+++.+..|+.+
T Consensus 94 ltv~enl~~~~~~~~~~~~----~~~~~---~~~~-~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 148 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPL----NSLFY---KKWI-PK-------------EEEMVEKAFKILEFLKLSHLYDRKA---- 148 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHH----HHHHH---CSSC-CC-------------CHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred Ceeeeeeeehhhhccccch----hhhhh---hccc-cc-------------HHHHHHHHHHHHHhcCcchhccCch----
Confidence 9999999998655432110 00000 0000 00 0112234567899999998887665
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
..|||||||||+|||+|+.+|++|||||||+|||+.++.+|++.|+++.. .| ++|+.++|+.+++.++||||++|++
T Consensus 149 -~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 149 -GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KG-ITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCCSTTGGGCSEEEEEET
T ss_pred -hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 47999999999999999999999999999999999999999999999864 45 4555568899999999999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+++++.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEecHHHHhh
Confidence 99999999988653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.9e-43 Score=375.49 Aligned_cols=228 Identities=24% Similarity=0.357 Sum_probs=181.8
Q ss_pred CCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHH
Q 001957 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (991)
Q Consensus 113 ~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKS 192 (991)
+.++.+|+|+||++.+.. ....+|+|||++|++|+.++|+||||||||
T Consensus 11 ~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKS 58 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGGGKS 58 (255)
T ss_dssp CCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTSSHH
T ss_pred CCCCCEEEEEEEEEEeCC--------------------------------CCCcceeceEEEEcCCCEEEEECCCCCcHH
Confidence 344567999999987631 124599999999999999999999999999
Q ss_pred HHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHH
Q 001957 193 TLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269 (991)
Q Consensus 193 TLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ 269 (991)
||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+ +..||+|||.|+... ...+ ++.+.
T Consensus 59 TLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~g~~~----~~~~---~~~~a 127 (255)
T d2hyda1 59 TLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSDTVKENILLGRPT----ATDE---EVVEA 127 (255)
T ss_dssp HHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-CSSBHHHHHGGGCSS----CCHH---HHHHH
T ss_pred HHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccC-CCCCHHHHHhccCcC----CCHH---HHHHH
Confidence 9999999999998 9999999999977643 4789999998755 567999999987321 1111 11111
Q ss_pred HHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeC
Q 001957 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349 (991)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDE 349 (991)
.+..++ .-....|++..||.+|+ ....|||||||||+|||||+.+|++|+|||
T Consensus 128 l~~~~l--------------------------~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDE 180 (255)
T d2hyda1 128 AKMANA--------------------------HDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDE 180 (255)
T ss_dssp HHHTTC--------------------------HHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHhCC--------------------------HHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111100 01134678889999985 456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 350 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 350 PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|||+||+.++..|++.|+++.+ ++|+|+++ |... ....||+|++|++|+|++.|+++++++
T Consensus 181 pts~LD~~t~~~i~~~l~~l~~--~~TvI~it-H~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 181 ATSALDLESESIIQEALDVLSK--DRTTLIVA-HRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTT--TSEEEEEC-SSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhc--CCEEEEEe-CCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999998753 56766654 4444 557899999999999999999999974
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.5e-44 Score=380.86 Aligned_cols=209 Identities=24% Similarity=0.324 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.||+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCC-c
Confidence 35999999999999999999999999999999999999998 9999999999976543 467999999877655 5
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++...... .+...+ ..+... ..-....+++..+|.+|+. .
T Consensus 91 ti~eNi~~~~~~~~~---~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT---DEDLWQ---VLDLAF--------------------------ARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp EHHHHTTSCTTSCSC---HHHHHH---HHHHHT--------------------------CTTTTTSSTTGGGCEESTT-S
T ss_pred chhhheecccccccc---hhhHHH---HHHHHH--------------------------hhhhhccCcccccccccCC-C
Confidence 999999886432111 000000 000000 0011235667888999854 5
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++. .++|+|+++ |... ....||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~it-H~l~-~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIA-HRLS-TIVDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEEC-CSHH-HHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEE-CCHH-HHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999985 366766654 5554 44679999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.6e-43 Score=373.34 Aligned_cols=230 Identities=23% Similarity=0.373 Sum_probs=181.1
Q ss_pred CCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcH
Q 001957 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (991)
Q Consensus 112 ~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGK 191 (991)
++.++.+++|+||++.+.. ....+|+|||+.|++||++||+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred cCCCceEEEEEEEEEEeCC--------------------------------CCCceeeceEEEEcCCCEEEEECCCCChH
Confidence 4456678999999987621 12459999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHH
Q 001957 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268 (991)
Q Consensus 192 STLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 268 (991)
|||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++. ++..|+++|+.++.... . ..+ ++.+
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ti~~n~~~~~~~~-~--~~~---~i~~ 124 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFNDTVANNIAYARTEE-Y--SRE---QIEE 124 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSSBHHHHHHTTTTSC-C--CHH---HHHH
T ss_pred HHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccc-cCCcchhhhhhhcCccc-C--CHH---HHHH
Confidence 99999999999998 9999999999987654 367999999765 55679999999863211 0 011 1111
Q ss_pred HHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEe
Q 001957 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMD 348 (991)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllD 348 (991)
..+..+ ....+ -.|++..||.+|+ .+..|||||||||+|||||+.+|+||+||
T Consensus 125 a~~~~~------------------------l~~~i--~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 125 AARMAY------------------------AMDFI--NKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp HHHTTT------------------------CHHHH--HHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHh------------------------HHHHH--HhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 111100 01111 2356678899985 46789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 349 EISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 349 EPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||||+||+.++..|++.|+++.+ ++|+|++ +|... ..+.||+|++|++|+|+++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l~-~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK--NRTSLVI-AHRLS-TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEEE-CSCGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhcc--CCEEEEE-ECCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999753 5666665 55554 457899999999999999999999975
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-39 Score=351.19 Aligned_cols=198 Identities=21% Similarity=0.302 Sum_probs=158.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+||+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+ ++||+|+..+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECCE----------EEEEeccccccC-ceee
Confidence 46999999999999999999999999999999999999998 999999983 899999876655 6999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.... . .....+ .+. .+.......+.+..++.+|. ....|
T Consensus 115 eni~~~~~~~----~-~~~~~~---~~~--------------------------~~~~~~i~~l~~~~~~~~~~-~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD----E-YRYKSV---VKA--------------------------CQLQQDITKFAEQDNTVLGE-GGVTL 159 (281)
T ss_dssp HHHTTTSCCC----H-HHHHHH---HHH--------------------------TTCHHHHTTSTTGGGCEECT-TCTTS
T ss_pred cccccccccc----c-hHHHHH---HHH--------------------------HHhHHHHHhchhhhhhhhhh-hccCC
Confidence 9998864221 0 000000 000 01122356777788888874 45679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+|||||+.+|+||+|||||+|||+.+..++++.+..... .++|+|+++ |.. +..+.||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~it-H~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVT-SKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEEC-SCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEe-chH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999986433332 456766654 444 566889999999999999
Q ss_pred EecCHHHHHH
Q 001957 405 YQGPRELVLE 414 (991)
Q Consensus 405 ~~G~~~~~~~ 414 (991)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-38 Score=336.04 Aligned_cols=198 Identities=24% Similarity=0.327 Sum_probs=167.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (991)
.+|+||||+|++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++...... ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3799999999999999999999999999999999976 45 89999999998665433 45799999887777889
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.+++.+...-+ .....++++++.++|.+..+.. ++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~-----~~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRS-----TN 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSB-----GG
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcC-----hh
Confidence 999998753210 0112356678899998877654 45
Q ss_pred CCChhHhHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 323 GISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~-------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++.+ .|.|+|+ ++|..+++.++||+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHHCCEE
Confidence 799999999999999986 6799999999999999999999999999865 4555554 567889999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999884
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.1e-37 Score=319.45 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=153.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+||+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.+. +..++|++|+..++..+||.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 4999999999999999999999999999999999999998 99999999998754 467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
++.+.+.+.+..... ..+...++.+++.+.. +.+..||
T Consensus 90 ~l~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~~------~~~~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNK------------------------------------NEIMDALESVEVLDLK------KKLGELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCH------------------------------------HHHHHHHHHTTCCCTT------SBGGGSC
T ss_pred HHHHHHHhcCCccCH------------------------------------HHHHHHHHHcCCcccc------cccCcCC
Confidence 999988766442110 0123346666664432 2345799
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|||||||+||++|+.+|++++|||||+|||+.++..+++.|+++.+. ++++|++.||+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999998764 466777766643 57999999865
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2e-19 Score=187.69 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=71.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+++|. ..++|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|++||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 45788988772 3578999999999999999999999999999999999865 56999999999865
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ..-+|.+|||+|++.++|.+||+|++.|.+.++.
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 101 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 101 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC
Confidence 3 2346789999999999999999999999988875
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=5.1e-19 Score=184.50 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=99.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+++|+... ++..+|+|||+.+++|+++||+|||||||||||++|+|-.. +.+|+|+++|++..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 57889998886432 34578999999999999999999999999999999999865 56999999999865
Q ss_pred ccc------c-cceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhcccc
Q 001957 936 QET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTK 984 (991)
Q Consensus 936 ~~t------f-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~ve 984 (991)
... + ++.+|||+|+..+.|.+||+|++.|...++.-...+.+++...+.
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 126 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHH
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHH
Confidence 311 2 356999999999999999999999999998777788777665554
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=6.5e-19 Score=184.40 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=87.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+.+|. ..++|+|||+.+++|+++||+||||||||||+++|+|-.. ..+|+|+|||++..
T Consensus 7 I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 71 (239)
T d1v43a3 7 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 71 (239)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecc
Confidence 67889998772 3578999999999999999999999999999999999876 46899999999964
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
. ..-+|.+|||+|+..++|++||+|++.|.+.+|. +++++...-++|
T Consensus 72 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~ 119 (239)
T d1v43a3 72 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRW 119 (239)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHH
T ss_pred cCCcccceEEEEeechhhcccchHHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 2 3457889999999999999999999999998874 566665554444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.73 E-value=1.6e-18 Score=181.68 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=94.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++++. ...+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.+||.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 367889998772 3578999999999999999999999999999999999876 5689999999885
Q ss_pred Cc---cc----ccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 935 KQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 935 ~~---~t----f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
.. .. .+|.+|||+|++.++|.+||+|++.|..+++. ++.+++...|+|
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~ 122 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVRE 122 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHH
Confidence 31 11 25789999999999999999999999999884 566666655554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.72 E-value=1.9e-18 Score=180.92 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=95.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..+||+++|+. ++..+|+|||+.+++|+.+||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 3678999988731 23678999999999999999999999999999999999765 4689999999985
Q ss_pred Cc------ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 935 ~~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
.. ...+|.+|||+|+..++|++||+|++.|.+.++ .++++++..-|+|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~ 123 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEE 123 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHH
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHH
Confidence 31 234678999999999999999999999987765 4666666655555
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.4e-18 Score=180.33 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=89.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
++++||+++|+... ...++|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|++..
T Consensus 2 i~v~nlsk~y~~~~---------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECSS---------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCCC---------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 57889998875431 24578999999999999999999999999999999999876 56899999999853
Q ss_pred ------cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 ------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ------~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
...++|.+|||+|+..++|.+||+|++.|.++++.
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~ 111 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence 12466789999999999999999999999988774
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.70 E-value=3.8e-18 Score=177.42 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=87.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+||++.|.. .+|+|||+.+++|+++||+||||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 2 i~v~nlsk~y~~--------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWKN--------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECSS--------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCC--------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 467889888721 25999999999999999999999999999999999876 46999999999965
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCC
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp 971 (991)
. ..-+|.+|||+|+..++|++||+|+|.|.++++.-
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~ 102 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhccc
Confidence 3 33467899999999999999999999999998854
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=6.5e-18 Score=177.61 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=89.3
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..+||+..+ +++.+|+|||+.++||+++||+|||||||||||++|+|... ..+|+|.++|++.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEec
Confidence 46788998776 24678999999999999999999999999999999999976 4699999999985
Q ss_pred C--cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 K--QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~--~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ....++.+|||||.+..+|.+||+|++.|.+.++.
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~ 104 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 104 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC
Confidence 4 23457889999999999999999999999998874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.67 E-value=8.5e-18 Score=177.28 Aligned_cols=95 Identities=28% Similarity=0.392 Sum_probs=82.9
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
++++||+|+|+- .+.+|+|||+.++||+.+||+|+||||||||+++|+|--. +.+|+|+|||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 679999999842 2357999999999999999999999999999999999865 45899999999965
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...+++.+|||+|+..+++. ||+|++.|.
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~ 99 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYG 99 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSC
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecc
Confidence 35678999999999888866 999999875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.67 E-value=3.6e-17 Score=167.83 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=94.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.|+ +.+|+|||+.+++|+++||+|||||||||||++|+|-.. +.+|+|.+||.+..
T Consensus 3 lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 3 LEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred EEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehh
Confidence 67899998873 246999999999999999999999999999999999866 57899999999975
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccceee
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSPRV 988 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev~~ 988 (991)
..++.++|++|+..+.+.+||+|.|.+.+.++.. ..++++-....+.+.+
T Consensus 67 --~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~ 116 (200)
T d1sgwa_ 67 --KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEV 116 (200)
T ss_dssp --GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTC
T ss_pred --HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCC
Confidence 4677889999999999999999999999998855 3445444444444443
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2e-17 Score=174.13 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=83.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.|+||+|.|+- ++..+|+|||+.++||+.+||+|+||||||||+++|+|--. ..+|+|+|||.+..
T Consensus 2 I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 689999999842 23568999999999999999999999999999999999765 45899999999964
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.+.+++.+|||+|+..++ ..||+|+|.|.
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~ 100 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLL-NRSIIDNISLA 100 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTT
T ss_pred ccchhhhhceEEEEecccccC-Ccccccccccc
Confidence 456789999999988666 57999999884
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.6e-17 Score=173.36 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=86.0
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.|+||+|.|+..+ ...+|+|||+.++||+.+||+|+||||||||+++|+|--. ..+|+|+|||.+
T Consensus 10 g~I~~~nvsf~Y~~~~----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRP----------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTST----------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEECCCCC----------CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEe
Confidence 3699999999996432 2467999999999999999999999999999999999876 468999999998
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.+ ...++|.+|||+|+..+++ .||+|++.|.
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g 111 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYG 111 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCS
T ss_pred cchhhhHHHHHHhhhccccccccC-cchhhhhhhh
Confidence 64 3457889999999998775 6999999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.66 E-value=4.9e-17 Score=172.35 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=85.8
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
....+.|+||+|.|+-. ...+|+|||+.++||+.+||+|+||||||||+++|+|--. ..+|+|+|||
T Consensus 13 ~~g~I~~~nvsf~Y~~~-----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCSS-----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCEEEEEEEEEEeCCC-----------CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCC
Confidence 34579999999998532 2457999999999999999999999999999999999766 5699999999
Q ss_pred ccCC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 932 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 932 ~~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.+.. .+.+++.+|||+|+..++ ..||||+|.|.
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g 115 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLG 115 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGG
T ss_pred EEcccCCHHHhhheeeeeeccccCC-CCCHHHHHhcc
Confidence 9864 356789999999988766 57999999875
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.66 E-value=3.8e-17 Score=172.01 Aligned_cols=104 Identities=24% Similarity=0.356 Sum_probs=88.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..+||+.+|. ..++|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccccc
Confidence 468889998762 3578999999999999999999999999999999999876 4689999999996
Q ss_pred Ccc---cccc-eeeEEeccCCCCCCCCHHHHHHhhhhccCCCC
Q 001957 935 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 973 (991)
Q Consensus 935 ~~~---tf~r-~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~ 973 (991)
... ..+| -+||++|+...+|.+||+|++.+.++.+.+++
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~ 113 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHH
Confidence 532 2223 38899999999999999999999998776543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=4.7e-16 Score=164.82 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=84.1
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.|+||+|.|+.. +..+|+|||+.++||+.+||+|+||||||||+++|+|--. ..+|+|+|||.+
T Consensus 12 g~I~~~nvsf~Y~~~-----------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPGR-----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEeCCC-----------CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 468999999998532 2457999999999999999999999999999999998765 458999999998
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.. ...+++.+|||+|+..++ .-|++|++.|.
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~ 112 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYA 112 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTT
T ss_pred cchhhhhhhhheEEEEeeccccC-Ccchhhhhhhc
Confidence 65 356788899999988666 67999999885
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=3.9e-16 Score=165.77 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=84.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+||+.++. ..++|+|||+.++||+++||+||||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 5 L~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEecc
Confidence 57788886652 3578999999999999999999999999999999999876 45899999999864
Q ss_pred cc---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
.. . .++-+|||+|+....|.+||+|+|.+.+.++.
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred chhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcc
Confidence 22 2 34458999999999999999999999876653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=5.3e-16 Score=164.66 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=82.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+||+.+|. ..++|+|||+.+++|+++||+|+||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 56788887662 3578999999999999999999999999999999999876 46999999999864
Q ss_pred c----------------ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ~----------------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
. ...+|.+|||+|+..++|.+||+|++.|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~ 114 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 114 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhH
Confidence 2 124578999999999999999999999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=1.6e-15 Score=158.14 Aligned_cols=92 Identities=22% Similarity=0.380 Sum_probs=76.0
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
|||+.+. |+.+||+|||||||||||++|+|-.. ..+|+|.+||.+... ..-+|.+|||+|++.++|++||+|+|.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999985 67999999999999999999999876 569999999998653 3457889999999999999999999999
Q ss_pred hhhccCCCCCCHHHHhccccc
Q 001957 965 SAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 965 sA~LRlp~~v~~~~k~~~vee 985 (991)
. || ..+++++...|+|
T Consensus 94 ~--l~---~~~~~~~~~~v~~ 109 (240)
T d2onka1 94 G--LR---NVERVERDRRVRE 109 (240)
T ss_dssp T--CT---TSCHHHHHHHHHH
T ss_pred h--hc---ccCHHHHHHHHHH
Confidence 6 34 3455555554544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=2.1e-15 Score=150.48 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=62.3
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.+|+|+++|.++++++..+|++|++|||.... .....++..|.++.+..+.+++++ +|.. ....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~-~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVAT-IPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEE-CCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEE-EccH-HHHHhhceEEEEeCCE
Confidence 48999999999999999999999999985443 344566667777655445555554 4433 5678899999999999
Q ss_pred EEEecC
Q 001957 403 IVYQGP 408 (991)
Q Consensus 403 iv~~G~ 408 (991)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 987553
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=3.8e-14 Score=152.22 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=64.9
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.+|+|||+.++||+++||+|||||||||||++|+|--. ..+|.|+++|+ ++||+|+..++| -||+|+
T Consensus 50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~en 116 (281)
T d1r0wa_ 50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKEN 116 (281)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHHH
T ss_pred eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccC-ceeecc
Confidence 57999999999999999999999999999999999876 45899999993 699999988776 499999
Q ss_pred HHhhh
Q 001957 962 LLFSA 966 (991)
Q Consensus 962 L~fsA 966 (991)
+.|..
T Consensus 117 i~~~~ 121 (281)
T d1r0wa_ 117 IIFGV 121 (281)
T ss_dssp HTTTS
T ss_pred ccccc
Confidence 98864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.6e-12 Score=134.07 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=69.4
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccccceeeEEeccCCCCCCCCHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
.|+|||+.+++|+++||+|||||||||||++|+|... .+|+|+++|.+... ...++..+|..|+.......||.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 3999999999999999999999999999999999653 47999999998542 23455679999998877788999
Q ss_pred HHHHhhh
Q 001957 960 ESLLFSA 966 (991)
Q Consensus 960 EsL~fsA 966 (991)
|.+.+..
T Consensus 91 ~~~~~~~ 97 (231)
T d1l7vc_ 91 HYLTLHQ 97 (231)
T ss_dssp HHHHHHC
T ss_pred HHhhhcc
Confidence 9998754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=2.9e-08 Score=106.60 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=61.8
Q ss_pred cCCCChhHhHHHHHHHH----HhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~----L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
...+|+|||+...++.. ...+++++++|||-++|++.....+++.|++.++ +.-+|+++| ++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTH--sp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITH--NKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECC--CTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEEC--CHHHHHhcccEE
Confidence 56799999999887754 3457889999999999999999999999998764 455666654 457889999996
Q ss_pred E--ecCC
Q 001957 397 L--LSDG 401 (991)
Q Consensus 397 l--L~~G 401 (991)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=9.1e-07 Score=98.54 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=59.3
Q ss_pred cCCCChhHhHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L----~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
...+|||||.++++|..+ +.++++++||||+++||+.....+.+.|++++. .+.-+|+++|+ +.+.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~--~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCC--HHHHHhcccEE
Confidence 366899999998887443 467889999999999999999999999988753 23335555443 47999999987
Q ss_pred Ee
Q 001957 397 LL 398 (991)
Q Consensus 397 lL 398 (991)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=6.1e-05 Score=76.76 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=31.9
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecC
Q 001957 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (991)
Q Consensus 339 ~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~ 384 (991)
+.+..++++||+.+|=|+.....+...+-+.....+.++++++|++
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 3455799999999999998877665444333333566777776653
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=7.6e-05 Score=76.57 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=31.6
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEec
Q 001957 339 VGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 339 ~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q 383 (991)
+.+..++++||+.+|=|+.....+... ++.+....+..+++++|+
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecch
Confidence 444579999999999999999888655 555655434455555443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.19 E-value=4.9e-05 Score=73.63 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
++|.||||||||||+++|+|.-. ...|.+.+.|.+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~ 37 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVR 37 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcc
Confidence 68999999999999999999865 346777777655
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=9.3e-05 Score=75.04 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.9
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|..++|+|+||+|||||+|.|.|+.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 48899999999999999999998874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.01 E-value=0.0017 Score=65.65 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred cCCcEeEEeCCCC---CCCHHHHHHHHHHHHHHhhccCceEEEEEecC---------CchhHhhcCeEEEec
Q 001957 340 GPALALFMDEIST---GLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------APETYDLFDDIILLS 399 (991)
Q Consensus 340 ~~p~vLllDEPTs---GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~---------~~~~~~lfD~vilL~ 399 (991)
.+|++++.|-.+. +.+.......+..|.+++++.+.+++++.|.+ ...+..++|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4788999887554 44666666777777777776777766665532 234567899998884
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.89 E-value=0.0037 Score=64.70 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=27.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
-|+++.+=+.||+++.|.|+||+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3454444478999999999999999999888774
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00025 Score=71.84 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~ 213 (991)
+|+.++++|+||+|||||+|.|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 36789999999999999999999876544 66664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00023 Score=67.84 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+++|.|+||||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999977654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.75 E-value=0.00035 Score=66.97 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00021 Score=69.91 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=23.2
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
|.+++|+||||||||||++.|..+-
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998774
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.69 E-value=0.00014 Score=74.00 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|..++|+|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 46788999999999999999999874
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.64 E-value=0.017 Score=57.09 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=38.6
Q ss_pred cCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHhhccCceEEEEEecCCc--------hhHhhcCeEEEec
Q 001957 340 GPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAP--------ETYDLFDDIILLS 399 (991)
Q Consensus 340 ~~p~vLllDEPTsGL----D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~--------~~~~lfD~vilL~ 399 (991)
.+|+++++|--+.-+ +......++..+.+.++..+.++++..|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 378999999876533 33444455555556666678888887765542 3345678887774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=5.3e-05 Score=74.17 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=29.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-.++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356778888776 99999999999999999997544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.57 E-value=0.00039 Score=67.90 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|++++|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.51 E-value=0.0004 Score=66.62 Aligned_cols=40 Identities=30% Similarity=0.266 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
++++|+|++|||||||++.|...+...+..-|.|.-+++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 3689999999999999999988776433234555555443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.00045 Score=65.96 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.44 E-value=0.00028 Score=71.67 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~ 213 (991)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 46788999999999999999999976544 66665
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.02 Score=58.64 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=32.6
Q ss_pred HhcCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 338 MVGPALALFMDEIST---G--LDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 338 L~~~p~vLllDEPTs---G--LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
...+++++++|--+. | -|.....++++.|+.+++..+.+ |+.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~-vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCc-eehhhhcc
Confidence 356899999996643 2 26666778899999988765555 55556654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.41 E-value=0.00069 Score=64.72 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|.++.|.|+|||||||+.+.|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00074 Score=64.13 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
+++++|+||||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.00028 Score=67.80 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358899999999999999999987654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.001 Score=63.74 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.16 E-value=0.00092 Score=63.83 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.|++++|+|+|||||||+-+.|+.+-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998763
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.10 E-value=0.001 Score=62.96 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.09 E-value=0.0014 Score=61.24 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG 200 (991)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.99 E-value=0.0016 Score=62.04 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|-.++|.|||||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566789999999999999999998753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0011 Score=66.15 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.7
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.|.++.|+||||+|||||++.|.-+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 3889999999999999999999765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.97 E-value=0.0013 Score=62.48 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.00017 Score=70.44 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=26.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
.++.+..|.|| +|+|+|++||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566777787 99999999999999999885
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.88 E-value=0.0013 Score=64.51 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+||||.+|||||||+|.|.|++
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999975
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0019 Score=64.42 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.84 E-value=0.0017 Score=61.52 Aligned_cols=22 Identities=55% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|||||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0013 Score=62.46 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.3
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+.+..|+|+|||||||+-..||.+-
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999875
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0023 Score=62.52 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
|=+++|+++.|.||||||||||..-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998887643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.77 E-value=0.0019 Score=63.27 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|||||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.76 E-value=0.0018 Score=61.87 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=26.8
Q ss_pred EEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGY 932 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~ 932 (991)
..+++|.+|||||||+.-|+.+- ..|..-|-|.-+++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 57899999999999999888762 24555555554443
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0019 Score=63.70 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.6
Q ss_pred EEEEeeccCCChhhhhhhhhccccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTG 920 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~ 920 (991)
.+||+|++|||||||+|.|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~~ 29 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSVR 29 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999998743
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.68 E-value=0.0025 Score=61.06 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0017 Score=63.04 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|.++.|.|+|||||||+.+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999998764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0033 Score=60.81 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=29.8
Q ss_pred eEEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
--+|++|.+|+|||||+|.|.|++. .....|.+.++|++
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 57 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 57 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce
Confidence 3589999999999999999998752 12245678888765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0026 Score=69.56 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~La 199 (991)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344556699999999999999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.0045 Score=59.79 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|++|+|||||+++|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0047 Score=58.03 Aligned_cols=40 Identities=38% Similarity=0.739 Sum_probs=30.7
Q ss_pred CeEEEEeeccCCChhhhhhhhhcccc------CC----eeeEEEEEcCcc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKT------GG----YITGNITISGYP 933 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt------~G----~i~G~I~inG~~ 933 (991)
|--++|+|.+|+|||||++.|.|++. .| .+.+.+...|++
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 50 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCce
Confidence 45689999999999999999998862 22 245667766665
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.56 E-value=0.0021 Score=61.91 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.++|+|.+|||||||+|.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0027 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998763
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0022 Score=62.47 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.++.|+||||+|||||++-|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998664
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.49 E-value=0.0019 Score=62.71 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+||+|.++||||||+|.|+|.+
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999999876
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.49 E-value=0.0031 Score=61.58 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=0.0025 Score=62.49 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998865
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.42 E-value=0.0031 Score=63.43 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999986543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.40 E-value=0.0041 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.++|+|.+|+|||||++.|+|++
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999976
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.38 E-value=0.0024 Score=60.69 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.4
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.|.++.|.|+|||||||+-..||-+-
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999663
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.0037 Score=59.73 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.34 E-value=0.0023 Score=61.95 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999875
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.32 E-value=0.0032 Score=60.57 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.31 E-value=0.0031 Score=59.92 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.7
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+|.-.+|+|++||||||+-+.||-+-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999653
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0042 Score=60.82 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+++|+|||||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.24 E-value=0.0043 Score=60.36 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|--++|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0031 Score=61.55 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.0
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.|.++||+++.|.|++|+|||||.--||..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999999998877754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.0039 Score=61.25 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.0044 Score=59.56 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999987753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0033 Score=61.35 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+||||||||||++-|+.+-
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997664
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0036 Score=59.95 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.8
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+||||.+|+|||||+|.|.|++
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.07 E-value=0.0026 Score=65.83 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=30.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
|+++.+.++||+++.|.|+||+||||++.-||-.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 7778888999999999999999999998888754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.0045 Score=64.84 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=21.4
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
..|.|+ +|+|+|++||||||+|++|
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHH
T ss_pred EeCCCC-eEEEECCCCCcHHHHHHHH
Confidence 334555 9999999999999999988
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.03 E-value=0.0048 Score=59.68 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0052 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0049 Score=60.05 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0056 Score=59.38 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.95 E-value=0.0049 Score=63.01 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..++|.||||||||||.++|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999865
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0048 Score=57.39 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|++|+|||||++.|.+-.
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.0086 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.7
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+||||.+|+|||||++.|.|++
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.93 E-value=0.0054 Score=58.27 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.|+|+|||||||+.+.||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999998863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.006 Score=58.27 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.90 E-value=0.005 Score=59.90 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.89 E-value=0.0042 Score=59.28 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.89 E-value=0.0033 Score=59.88 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++.|++|+|||||.+.||.+-
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.89 E-value=0.004 Score=60.01 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+||+|++++|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.89 E-value=0.0051 Score=57.25 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.|.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.82 E-value=0.0065 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
+-+++.++|+|||||||+.+.|+-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0066 Score=60.69 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999877643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.74 E-value=0.0071 Score=58.06 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.73 E-value=0.0047 Score=60.49 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=19.0
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
++|+||||+|||||++.|+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0076 Score=56.51 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|++|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.71 E-value=0.0064 Score=58.68 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999998763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0047 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEeeccCCChhhhhhhhhcccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt 919 (991)
-+||+|.++||||||+|.|.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 499999999999999999988763
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.68 E-value=0.005 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999988753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.68 E-value=0.0053 Score=65.41 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++.|.-++|.||.||||||||++|.+..++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4555668999999999999999999998875
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.64 E-value=0.0069 Score=59.23 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.63 E-value=0.01 Score=60.95 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=30.2
Q ss_pred EEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
-++|+|.+|+|||||+|.|.|++. .....+...++|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~ 81 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT 81 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE
Confidence 589999999999999999999862 22356777777764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.62 E-value=0.0064 Score=58.11 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+.|+|++||||||+-+.||-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999997653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.61 E-value=0.0059 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.++.|+|++||||||+.+.||.+-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.61 E-value=0.0075 Score=59.04 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++++|.||||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.58 E-value=0.0067 Score=56.77 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.58 E-value=0.0062 Score=56.51 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred eEEEEeeccCCChhhhhhhhhc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLag 916 (991)
.++.|.|+||||||||.+-|+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.0052 Score=59.11 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+||+|.+|+|||||+|.|+|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.46 E-value=0.0081 Score=57.04 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.|+|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.43 E-value=0.0083 Score=57.74 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999775
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0063 Score=56.53 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|++|||||||++.|.+.+
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999986
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.41 E-value=0.0084 Score=56.58 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.41 E-value=0.014 Score=54.97 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=27.5
Q ss_pred EEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGY 932 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~ 932 (991)
++++|++|+|||||++-|.+.. |.|.....+-.++.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 46 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 46 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeecccccc
Confidence 6899999999999999999875 34555555555543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0079 Score=57.81 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998665
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.38 E-value=0.0086 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0048 Score=59.07 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++++|||||+|+|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.37 E-value=0.0057 Score=57.70 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
.+|+|++||||||+-+.||-+-
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999663
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0087 Score=57.68 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.28 E-value=0.0071 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
-++|+|.+|||||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.25 E-value=0.0085 Score=60.08 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
.+++.|+.|||||||++-|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999963
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.23 E-value=0.012 Score=59.23 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~La 199 (991)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999986543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.21 E-value=0.0095 Score=57.46 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+||+|++.||||||+|.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.011 Score=58.44 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.0082 Score=63.96 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.-.++|.||||||||||++.|+..+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999986654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.10 E-value=0.01 Score=58.36 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.08 E-value=0.008 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..++.|.|+|||||||+-..|+.+-
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999775
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.05 E-value=0.014 Score=58.28 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|=+++|+++.|.|+||+|||||..-++-.
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45999999999999999999998777644
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.02 E-value=0.0038 Score=58.68 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEeeccCCChhhhhhhhhcccc------CC----eeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT------GG----YITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt------~G----~i~G~I~inG~~ 933 (991)
+||+|.+|+|||||+|.|+|++. .| .+.+.+.++|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 49 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCee
Confidence 69999999999999999999862 11 245666666654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.99 E-value=0.0079 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEeeccCCChhhhhhhhhcccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt 919 (991)
++|+|.+|+|||||++-|++.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 57999999999999999998763
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.98 E-value=0.012 Score=58.31 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|-|||||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999998764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.0057 Score=59.14 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=26.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+-.-+|. .|.++.|.|+|||||||+-+.||-+-
T Consensus 11 ~~~~~~~--~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 11 VGTRGGF--RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp HSSSCSC--CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HhhhcCC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444 58899999999999999999998663
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.012 Score=58.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.0039 Score=58.57 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.94 E-value=0.009 Score=55.85 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-|.+++
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999886
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.85 E-value=0.012 Score=55.84 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.75 E-value=0.013 Score=60.23 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999974
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.017 Score=58.02 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999887764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.57 E-value=0.018 Score=57.20 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=30.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 220 (991)
+.|.++.|.|.||||||||.+.|.-.+.... -.-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHHH
Confidence 3677899999999999999999986653210 0124567766543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.53 E-value=0.008 Score=57.01 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=23.6
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeE
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITG 925 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G 925 (991)
.+|+|++||||||+-..||.+-...++..
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 68999999999999999998864444443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.011 Score=62.93 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=25.2
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
||+.+.-.-.....+++.|+.|||||||++.|+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 4444322224467899999999999999999973
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.43 E-value=0.015 Score=58.05 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=28.3
Q ss_pred ccC-ceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 884 LNG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 884 L~~-VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
||. ++|.+++|++|-|.|++|+||||+..-+|-.
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 444 3578999999999999999999997777643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.42 E-value=0.012 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEeeccCCChhhhhhhhhcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagR 917 (991)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.018 Score=58.15 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..++|.||||+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.38 E-value=0.0096 Score=56.49 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.1
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEE
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGN 926 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~ 926 (991)
+.|+|++||||||+-..||.+-....+.+|
T Consensus 4 IvliG~~G~GKSTig~~La~~l~~~fiD~D 33 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence 568899999999999999988655555543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.32 E-value=0.009 Score=57.01 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.5
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEE
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGN 926 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~ 926 (991)
..|||++||||||+-..||-+..-.++.+|
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D 34 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALGYEFVDTD 34 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEehh
Confidence 569999999999999999977654556554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.30 E-value=0.016 Score=61.13 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334567899999999999999998754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.30 E-value=0.016 Score=61.64 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.017 Score=57.89 Aligned_cols=25 Identities=48% Similarity=0.721 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+++.||||+|||||.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6899999999999999999876543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.28 E-value=0.018 Score=57.59 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|.||||+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.25 E-value=0.016 Score=58.15 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++.||||+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.23 E-value=0.015 Score=55.94 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~ 933 (991)
++||-|+||||||||-+.|+-+- ..|...-.+..+++.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~ 62 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccccceeccccccc
Confidence 78999999999999999998652 223333344444443
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.22 E-value=0.017 Score=54.40 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++++|++|+|||||++.|.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.21 E-value=0.029 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|++|+|||||++.|.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5789999999999999998776
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.022 Score=59.92 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (991)
+++|-|++||||||+.+.|...+... .....+..|++++-+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECC
Confidence 78999999999999999998876432 01234677888777765
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.14 E-value=0.014 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
-++|||+.|+|||||++.|.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.012 Score=55.63 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+.|.|++|+|||||+..++.+-
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999774
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.016 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEeeccCCChhhhhhhhhcccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt 919 (991)
...|.|++||||||+-..||-+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999997753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.92 E-value=0.02 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.9
Q ss_pred eEEEEeeccCCChhhhhhhhhcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagR 917 (991)
.+++||||+||||||+-..||-.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.91 E-value=0.02 Score=54.46 Aligned_cols=21 Identities=57% Similarity=0.722 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.86 E-value=0.023 Score=57.53 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++.++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45789999999999999999887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.83 E-value=0.019 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
--++|+|.+|||||||++-|.+.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999986
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.81 E-value=0.018 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
+..+.|++||||||+.+.||.+-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999774
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.019 Score=57.21 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.8
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
.|.+++|.++-|.|++|+|||||.--+|
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 3679999999999999999999986554
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.77 E-value=0.023 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.67 E-value=0.022 Score=55.20 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.64 E-value=0.024 Score=57.68 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.-++|.||||+|||+|.++||....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999998643
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.028 Score=57.59 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+..-++|.||||+|||+|.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445678999999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.63 E-value=0.054 Score=52.05 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=28.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
..||.....+ .|.=++|.|+||+|||||...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3566655555 8999999999999999999888754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.027 Score=55.74 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.52 E-value=0.024 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..++++=|++||||||+++.|+.+-
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998664
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.50 E-value=0.025 Score=53.57 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.49 E-value=0.025 Score=53.64 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.45 E-value=0.026 Score=61.77 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999643
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.021 Score=57.04 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+.+++|-|+-||||||+++.|+..+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 678999999999999999999998753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.39 E-value=0.027 Score=56.40 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
++||+|.+.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.34 E-value=0.024 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+||+|...||||||+|.|.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998743
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.31 E-value=0.038 Score=52.31 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
-++++|.+|+|||||++-|.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.30 E-value=0.032 Score=56.30 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.28 E-value=0.025 Score=56.05 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+.+++++||+|+||||.+-=||.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999877776654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.026 Score=53.18 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.21 E-value=0.023 Score=54.85 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
..|+||+||||||+-+.||-+-
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998664
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.045 Score=51.70 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=26.7
Q ss_pred EEEeeccCCChhhhhhhhhcccc------CC-eeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT------GG-YITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt------~G-~i~G~I~inG~~ 933 (991)
++|+|.+|+|||||++-+.+... .+ ...-.+.++|..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 47 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE 47 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEE
T ss_pred EEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccc
Confidence 68999999999999999998753 12 123456677765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.15 E-value=0.029 Score=52.72 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.11 E-value=0.027 Score=56.49 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.7
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
.|.+.+|.++-|.|++|+||||+.--+
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred cCCccCCEEEEEEcCCCCCHHHHHHHH
Confidence 368999999999999999999986544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.023 Score=56.90 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.8
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
.|.+.||.++-|.|++|+||||+---+|
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred cCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999999975554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.10 E-value=0.029 Score=57.74 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++..-++|-||||+|||+|.++|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3445588999999999999999999864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.035 Score=54.58 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.031 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.01 E-value=0.032 Score=55.50 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|-||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.96 E-value=0.031 Score=56.92 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.92 E-value=0.025 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+-+++-|+|++||||||+..-|+-.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3459999999999999999888643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.037 Score=53.11 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.66 E-value=0.033 Score=54.95 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=26.1
Q ss_pred ccCc-eeeeeCCeEEEEeeccCCChhhhhhh
Q 001957 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDV 913 (991)
Q Consensus 884 L~~V-Sg~~~pG~ltALmG~SGAGKTTLldv 913 (991)
||++ .|.++||+++-|-|++|+|||||.--
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 7775 47899999999999999999999743
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.042 Score=52.10 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.61 E-value=0.038 Score=56.54 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
=++|.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999999753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.037 Score=52.50 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.53 E-value=0.035 Score=52.20 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.53 E-value=0.034 Score=55.01 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+++++||+|+||||.+-=||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999988887654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.51 E-value=0.021 Score=60.68 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
-++|.||+|+|||||++.|++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.45 E-value=0.031 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.5
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
....||||+||||||+-+.||.+-
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.044 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.054 Score=51.07 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988743
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.038 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.34 E-value=0.076 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
.||. +...-.|.=++|.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4554 344557889999999999999999887754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.038 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.29 E-value=0.034 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~~ 29 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADDS 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7899999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.039 Score=52.18 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999997665
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.036 Score=54.53 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
++||=|+|||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.035 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-|.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 6899999999999999988765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.18 E-value=0.045 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|-||+|+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.044 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.16 E-value=0.031 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.|.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999988543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.057 Score=55.37 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
|=+++|++|.|.||||||||||.-.++.-.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 568899999999999999999987776554
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.041 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.8
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+.|+=|+.||||||+++.|+.+-
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.09 E-value=0.036 Score=60.48 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.6
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
--+|++|.+|||||||+|.|.|++
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348999999999999999999964
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.038 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-|.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.071 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-|.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.042 Score=54.27 Aligned_cols=27 Identities=41% Similarity=0.462 Sum_probs=24.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
|.|.+.++-|+-||||||+.+.|+.+-
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.038 Score=51.98 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=28.1
Q ss_pred EEEEeeccCCChhhhhhhhhcccc-------CCe-eeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT-------GGY-ITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt-------~G~-i~G~I~inG~~~ 934 (991)
-++|+|.+|+|||||++-|.+.+- .+. ..-.+.+||.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEE
Confidence 478999999999999999887541 111 233567888663
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.01 E-value=0.043 Score=54.79 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.0
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+.|.+.||.++.|-|++|+|||||..-+|-.
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999998766655
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.046 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.98 E-value=0.041 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEeeccCCChhhhhhhhhcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagR 917 (991)
.+++|+|.+|+|||||-+.||.+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999954
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.91 E-value=0.047 Score=52.24 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.91 E-value=0.044 Score=54.16 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=41.4
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCccCC---c-ccccceeeE--EeccCCCCCCCCHHHHHHh
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKK---Q-ETFARISGY--CEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~~~---~-~tf~r~~GY--~eQ~Dih~p~~TVrEsL~f 964 (991)
+..++|+||+|+||||++-=||-+- ..|.--+=|..+-|-.. | .+|+++.|- ..-.+...|...+++.+.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 83 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA 83 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence 4588999999999999988887653 23444455666655432 1 245555442 1222233444455555544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.047 Score=51.95 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.072 Score=50.84 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=28.8
Q ss_pred eEEEEeeccCCChhhhhhhhhcccc------CC-eeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKT------GG-YITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt------~G-~i~G~I~inG~~ 933 (991)
--++++|.+|+|||||++-+.+.+. .+ ..+..|.++|.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~ 51 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQT 51 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceE
Confidence 3578999999999999997766542 11 235567888876
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.065 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.82 E-value=0.038 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++.|.||||+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.05 Score=53.86 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+.|-||+|+|||||+++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.061 Score=53.24 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5889999999999999999999987764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.80 E-value=0.04 Score=51.71 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
++|+|.+|+|||||++-|.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.069 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++.|.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.78 E-value=0.05 Score=50.88 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.047 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.66 E-value=0.043 Score=52.88 Aligned_cols=27 Identities=41% Similarity=0.455 Sum_probs=23.7
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++|.-..||||.||||||+-..||.+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 368888999999999999999999653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.64 E-value=0.039 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|+|++|+|||||++.+.+-.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999987543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.62 E-value=0.074 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.-++++|.+|+|||||++-|.+..
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357799999999999999997664
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.60 E-value=0.087 Score=49.61 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred EEEeeccCCChhhhhhhhhccc-------cCCe-eeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK-------TGGY-ITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk-------t~G~-i~G~I~inG~~ 933 (991)
++|+|.+|+|||||++-+.+.+ |.|. .+..+.++|..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 51 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccccccccccc
Confidence 6899999999999999887654 2232 35667788876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.049 Score=51.59 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.57 E-value=0.059 Score=52.85 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
+++|.|+.||||||+.+.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.049 Score=52.78 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.47 E-value=0.046 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
...|+.||+||||||+=..||..-
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.44 E-value=0.039 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.40 E-value=0.062 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+++++||+|+||||.+-=||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999987777665
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.37 E-value=0.097 Score=49.84 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=27.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
-||. ++..-.|.=++|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4566 555668999999999999999999777655
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.33 E-value=0.087 Score=54.79 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.|.+|||||+++|++-
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999975
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.30 E-value=0.05 Score=53.88 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCccCC---c-ccccceeeE--EeccCCCCCCCCHHHHHHh
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKK---Q-ETFARISGY--CEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~~~---~-~tf~r~~GY--~eQ~Dih~p~~TVrEsL~f 964 (991)
.-...+|+||+|+||||++-=||-+- ..|.--|=|..|-+-.. | .+|+++.|- ....+-..+...+++++..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 34579999999999999988888662 23333456666655421 2 355555542 2222333333344555543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=0.051 Score=54.49 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.22 E-value=0.05 Score=53.98 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYP 933 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~ 933 (991)
+-...+|+||+|+||||.+-=||-|- ..|.--|=|..|-|-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R 51 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 51 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence 44589999999999999998888663 234445666666655
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.20 E-value=0.062 Score=54.32 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.8
Q ss_pred eEEEEeeccCCChhhhhhhhhccccCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKTGG 921 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt~G 921 (991)
..+-|.||.|||||||...||+....+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~~ 59 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQGN 59 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 457799999999999999999876443
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.064 Score=54.95 Aligned_cols=75 Identities=23% Similarity=0.184 Sum_probs=48.2
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhcc--ccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagR--kt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
|.+.+|.+|-|.|++|+|||||+=-++-- +.++. -++|+..-.-...+++..|.=...=+..+.-|+.|.+..--
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~---~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~ 125 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT---CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 125 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCE---EEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence 89999999999999999999997555433 23332 47888776433445555564221112344457777765543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.13 E-value=0.075 Score=51.50 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+||+|...+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.12 E-value=0.058 Score=53.27 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=30.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc--CCeeeEEEEEcCccC
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNITISGYPK 934 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt--~G~i~G~I~inG~~~ 934 (991)
+.|.+.-|.|.||||||||-+.|+-+.. .|. --+.++|-..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~--~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRV--HAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC--CEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCc--eEEEEcchHH
Confidence 6788999999999999999999985531 121 2455666543
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.03 E-value=0.064 Score=50.41 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.064 Score=50.37 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.96 E-value=0.051 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=17.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
-.+++++||+|+||||.+-=||.++.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999877776653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.075 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
+++|.|++||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.06 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.055 Score=51.12 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=27.2
Q ss_pred EEEeeccCCChhhhhhhhhccc-------cCC-eeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK-------TGG-YITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk-------t~G-~i~G~I~inG~~ 933 (991)
++|+|.+|+|||||++-+.+.+ |.| ...-++.++|..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 52 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccc
Confidence 8999999999999999887754 222 244556677654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.87 E-value=0.089 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+||.+++|-|+=|||||||.+.++.-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 589999999999999999999998655
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.054 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998875
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.83 E-value=0.055 Score=59.74 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~ 234 (991)
=++++||+|+|||-|.+.||+.++-- -+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee------ecceeecc
Confidence 47899999999999999999987521 2334433322 37888875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.057 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-+.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887754
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.63 E-value=0.062 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=22.1
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+|+-+ +|+||...||||||++.|.+.
T Consensus 3 ~r~p~-IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSPI-VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCCE-EEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCE-EEEEeCCCccHHHHHHHHHhh
Confidence 45453 999999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.63 E-value=0.059 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999887654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.087 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999877887654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.59 E-value=0.067 Score=50.67 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.58 E-value=0.07 Score=55.99 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001957 181 TLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~ 202 (991)
+||+|.|-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999863
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.073 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.53 E-value=0.05 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877553
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.52 E-value=0.12 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.-+.|+|.+|+|||||++-|.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 346799999999999999998664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.50 E-value=0.11 Score=48.96 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.1
Q ss_pred EEEeeccCCChhhhhhhhhcccc-------CC-eeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT-------GG-YITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt-------~G-~i~G~I~inG~~ 933 (991)
++|+|.+|+|||||++-+.+.+- .+ ...-.+.++|.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 53 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIP 53 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEE
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCee
Confidence 78999999999999998876541 11 134467777765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.064 Score=54.60 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.2
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+.||.++.|.|++|+|||||+--||-.
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999998766643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.46 E-value=0.059 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
..|+|+.||||||+-..||-+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.44 E-value=0.066 Score=51.74 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+.+.++.|+||.||||||+-+.||-+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999865
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.41 E-value=0.075 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999976643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.37 E-value=0.062 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~ 26 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGR 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999988654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.066 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999887754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.35 E-value=0.062 Score=51.39 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999888654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.076 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999887754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.079 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997644
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.22 E-value=0.06 Score=57.86 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667999999999999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.065 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.071 Score=52.72 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=32.1
Q ss_pred eEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCccC---Cc-ccccceee
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPK---KQ-ETFARISG 944 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~~---~~-~tf~r~~G 944 (991)
.+++|+||+|+||||.+-=||-+- ..|.--+=|..|-|-. .| .+|+++.|
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 64 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcC
Confidence 479999999999999999998652 2343334444444431 12 34555555
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.069 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
.++|+||+||||||.-..||-+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.08 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.10 E-value=0.067 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHhhCC
Confidence 7899999999999999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.078 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-+.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~ 30 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNK 30 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.03 E-value=0.094 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|=|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.03 E-value=0.051 Score=56.32 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|-|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=0.053 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=8.5
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+++||.+|+|||||++-|.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999888654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.073 Score=50.40 Aligned_cols=37 Identities=30% Similarity=0.535 Sum_probs=27.7
Q ss_pred EEEeeccCCChhhhhhhhhcccc--------CC--eeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT--------GG--YITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt--------~G--~i~G~I~inG~~ 933 (991)
++|+|.+|+|||||++-+.+.+. .| ..+-.+.++|..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 52 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 52 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE
T ss_pred EEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCce
Confidence 68999999999999999987641 12 234567777765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=88.96 E-value=0.053 Score=57.35 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.1
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 921 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G 921 (991)
+...++.|.-+.+.|+.|+||||||+.|.+-....
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 34456777778999999999999999999876443
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.96 E-value=0.074 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
+.||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999953
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.90 E-value=0.11 Score=49.85 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=23.8
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.-.|.=+.++|+||+|||||.--|..|.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998887663
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.89 E-value=0.059 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.7
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
++|+-|+|||||||+.+.|+..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999988653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.88 E-value=0.073 Score=52.49 Aligned_cols=39 Identities=28% Similarity=0.168 Sum_probs=27.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~ 933 (991)
.+.+|+||+|+||||++-=||-+- ..|.--|=|..|-+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R 50 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 50 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 478999999999999999998652 223334555555444
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.84 E-value=0.08 Score=57.67 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.++-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35569999999999999999999887653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.84 E-value=0.087 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.79 E-value=0.089 Score=49.59 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.77 E-value=0.081 Score=53.15 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+.+++|.|++|+|||||+.-++-+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999887554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.064 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-+.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999988765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.078 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999988654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.59 E-value=0.078 Score=52.41 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
.|.+.|+=|+-||||||+.+.|+.+-.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999997743
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.54 E-value=0.078 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
..|+||.||||||+-+.||-+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999855
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.075 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-+.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 6799999999999999877654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.076 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999887654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.36 E-value=0.079 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++.|.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999988754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.075 Score=51.93 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=26.1
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCee-eEEEE
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNIT 928 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i-~G~I~ 928 (991)
++||.||+||||||+=..||.+-.--++ +|+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 7899999999999999999988532334 46653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.23 E-value=0.1 Score=50.01 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 001957 181 TLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~La 199 (991)
++|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999883
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=88.21 E-value=0.11 Score=54.47 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=30.4
Q ss_pred eEEEEeeccCCChhhhhhhhhccc---cCCeeeEEEEEcCccCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKK 935 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk---t~G~i~G~I~inG~~~~ 935 (991)
-++||-|+|||||||+-+.|+..- ..|...--|..||+-++
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECC
Confidence 489999999999999988886542 23444556777787654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.082 Score=50.46 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=27.6
Q ss_pred EEEEeeccCCChhhhhhhhhccc-------cCC-eeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-------TGG-YITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-------t~G-~i~G~I~inG~~ 933 (991)
-++|+|.+|+|||||++-+.+++ |.| ...-.+.++|..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~ 52 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP 52 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcc
Confidence 48999999999999999988875 222 223455666654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.13 E-value=0.14 Score=48.94 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=25.3
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
|+.....+ .|.-+.+.|+||+|||||.--|.-|
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 44333333 7888999999999999999887755
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.09 E-value=0.12 Score=54.17 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|...++++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 445688999999999999999998753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.07 E-value=0.12 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.02 E-value=0.16 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|-|-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.01 E-value=0.076 Score=50.68 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
..|+||.||||||+-+.||.+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.96 E-value=0.088 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-|.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~~~ 28 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVEDS 28 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999987654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.81 E-value=0.089 Score=50.05 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
..|+||+||||||+-+.||.+-
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999663
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.79 E-value=0.12 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.12 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++++|.+|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999976654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.64 E-value=0.094 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6799999999999999888754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.62 E-value=0.11 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.61 E-value=0.12 Score=49.48 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999988664
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=0.099 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+.|+|.+|+|||||++-+.+.+
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 5799999999999999998765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.12 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.37 E-value=0.076 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagR 917 (991)
....++|.|+-|||||||++.|..+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.28 E-value=0.13 Score=52.80 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=49.0
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhcc--ccCCeeeEEEEEcCccCCcccccceeeEEeccC-CCCCCCCHHHHHHhh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFARISGYCEQND-IHSPFVTIYESLLFS 965 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagR--kt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fs 965 (991)
|.+.+|.+|.+.|++|+|||||.=.++.- +.+|. -|+||..-.-...+++..|.= .++ ++.+.-|+.|.+...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~---~vyIDtE~~~~~e~a~~~GvD-~d~il~~~~~~~E~~~~~~ 130 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV---AAFIDAEHALDPDYAKKLGVD-TDSLLVSQPDTGEQALEIA 130 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE---EEEEESSCCCCHHHHHHHTCC-GGGCEEECCSSHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCE---EEEEECCccCCHHHHHHhCCC-HHHeEEecCCCHHHHHHHH
Confidence 79999999999999999999996444321 23443 488888773334455666742 223 245556888877643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.24 E-value=0.13 Score=50.96 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cCcCCC
Q 001957 180 LTLLLGPPSSGKTTLLLALA-GKLDPT 205 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~La-G~~~~~ 205 (991)
-++|||.+|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 46899999999999998764 333454
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=0.11 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
++|+|.+|+|||||++-|.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=0.12 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.|.+.++=|+-||||||+++.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999865
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.03 E-value=0.13 Score=48.32 Aligned_cols=46 Identities=33% Similarity=0.420 Sum_probs=32.9
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeE
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY 945 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY 945 (991)
..+||.+++|-|+=||||||+..-++.-. |. .+. .+-.||.-+-=|
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l--g~-~~~-------V~SPTF~l~~~Y 74 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GH-QGN-------VKSPTYTLVEEY 74 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT--TC-CSC-------CCCCTTTCEEEE
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc--cc-ccc-------cCCCceEEEEee
Confidence 34899999999999999999999987332 32 222 233577665556
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.97 E-value=0.12 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999876643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.85 E-value=0.14 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|.-+||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.84 E-value=0.15 Score=53.64 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=23.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
...+.| .+++.||||+|||.|.++|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 67778999999999999999875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.11 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-+.+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999877653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.76 E-value=0.15 Score=52.16 Aligned_cols=29 Identities=41% Similarity=0.621 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
+=++.|+++.|.||+|+|||||+-.++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 45789999999999999999997665543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.75 E-value=0.18 Score=47.88 Aligned_cols=30 Identities=30% Similarity=0.152 Sum_probs=24.5
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
|.-.-.|.=+.+.|+||+|||||.--|.-|
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 344567888999999999999999777666
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.12 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+...+
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7999999999999999988664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.09 Score=54.23 Aligned_cols=36 Identities=39% Similarity=0.676 Sum_probs=30.1
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
-+++|+.++. |=.+++++|+-+.|||||||.|.|..
T Consensus 21 ~l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 21 ALKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 3556777765 44599999999999999999999986
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.42 E-value=0.12 Score=53.04 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.1
Q ss_pred EEEEeeccCCChhhhhhhhh
Q 001957 896 LTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLa 915 (991)
-+|++|..|+|||||++.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 36999999999999999983
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.36 E-value=0.19 Score=51.55 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=19.0
Q ss_pred EEEEeeccCCChhhhhhhhh---cc--ccCCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLA---GR--KTGGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLa---gR--kt~G~i~G~I~inG~~ 933 (991)
-+||+|..|||||||.+.|. |. +.+..-.|....+-.|
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~ 50 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFME 50 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccH
Confidence 36999999999999999993 32 2223345666666555
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.23 E-value=0.15 Score=48.42 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001957 181 TLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG 200 (991)
++|+|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999976554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.21 E-value=0.16 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+|..+||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.17 Score=52.29 Aligned_cols=28 Identities=39% Similarity=0.681 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
|-.|+-.+|+|++|+|||||+..|+.-.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999988743
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.98 E-value=0.18 Score=51.62 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=53.1
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccc--cCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRk--t~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
|.+..|.+|-+-|++|+|||||.-.++... .+|. -++||..-.-...+++..|.=+.+=++.+.-|+.|.+....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~---v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~ 128 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGT---CAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIME 128 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCE---EEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence 799999999999999999999987666542 3443 47888765333456666776443334566678888775543
Q ss_pred h
Q 001957 967 W 967 (991)
Q Consensus 967 ~ 967 (991)
.
T Consensus 129 ~ 129 (268)
T d1xp8a1 129 L 129 (268)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.13 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.89 E-value=0.12 Score=53.99 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
|+.-+-|.||+|+|||+|-+.||.--. . --+.+|+-.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~-~---~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN-A---PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-C---CEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc-c---chhcccccc
Confidence 333456899999999999999996532 1 145555544
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.76 E-value=0.14 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++++|.+|+|||||++-|.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 5799999999999999998554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.70 E-value=0.15 Score=50.64 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6899999999999999998764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.46 E-value=0.21 Score=51.00 Aligned_cols=31 Identities=48% Similarity=0.724 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 5688999999999999999999988877543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=0.15 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
++++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999976553
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.42 E-value=0.13 Score=49.00 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
..|+|+.||||||+-..||.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999976
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.39 E-value=0.19 Score=49.04 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=24.5
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.||-.-+|++|.=.||||||++.|.|.
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCCCeEEEEEEccCCcHHHHHHHHHhh
Confidence 478888999999999999999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.37 E-value=0.12 Score=51.13 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
.-|-||+|+|||||..+||..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.09 E-value=0.14 Score=49.50 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.4
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
++++=|.-||||||+++.|+.+-
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998763
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.96 E-value=0.25 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH---hcCcCC
Q 001957 179 RLTLLLGPPSSGKTTLLLAL---AGKLDP 204 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~L---aG~~~~ 204 (991)
+-++|+|+.|||||||...| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 35799999999999999988 566554
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.94 E-value=0.15 Score=49.22 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagR 917 (991)
|=.-+|++|.-.||||||+|.|.|.
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhh
Confidence 3345899999999999999999873
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.57 E-value=0.18 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
..-|-||+|+||||+..+||...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.51 E-value=0.17 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.49 E-value=0.14 Score=50.84 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=24.3
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.-|-||+|+||||+..+||..-..- -+.+||...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~----~~~~~~~~~ 71 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN----IHVTSGPVL 71 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC----EEEEETTTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC----cccccCccc
Confidence 4589999999999999998653321 234566553
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=84.39 E-value=0.15 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.5
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
+-|-||+|+|||+|...||..
T Consensus 48 iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeCCCCCCccHHHHHHHHH
Confidence 448999999999999999954
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.30 E-value=0.17 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
-.+|+|+.||||||+-..||-+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999976
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.20 E-value=0.17 Score=48.38 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEEeeccCCChhhhhhhhhcc----ccCCeeeEEEEEcCc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGY 932 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR----kt~G~i~G~I~inG~ 932 (991)
+.|+|.+|+|||||++-+.-- .|-|...-.+.+.+.
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG~~~~~~~~~~~ 44 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYDFEIKNV 44 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSSEEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeeeeEEEEEeeeee
Confidence 579999999999999988322 245654444444433
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.91 E-value=0.25 Score=50.47 Aligned_cols=21 Identities=52% Similarity=0.577 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 001957 179 RLTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~La 199 (991)
+-++|+|+.|||||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 357999999999999999983
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.84 E-value=0.19 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
++|+|.+|+|||||++-+.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987664
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.62 E-value=0.25 Score=48.65 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=34.0
Q ss_pred hcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 339 VGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 339 ~~~p~vLllDEPTsG-LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
....++|++|+.=.= =+......+...+..... .++.+|++...|+.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhc
Confidence 335689999998542 246667777777776543 6788888887776554
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.52 E-value=0.2 Score=47.54 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.1
Q ss_pred EEEeeccCCChhhhhhhhhccc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRk 918 (991)
+.|+|.+|+|||||++-+...+
T Consensus 5 ivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 5799999999999999777654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.48 E-value=0.29 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~ 201 (991)
.+++|.|+.||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999653
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.42 E-value=0.24 Score=47.01 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~ 201 (991)
++|||.+|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988644
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.15 E-value=0.2 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=15.4
Q ss_pred EEEEEcCCCCcHHHHH-HHHhc
Q 001957 180 LTLLLGPPSSGKTTLL-LALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL-~~LaG 200 (991)
-++|+|++||||||.| ..++-
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHH
Confidence 3689999999999764 43433
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.50 E-value=0.29 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
-.+|+||||.|||+++..|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999998754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.49 E-value=0.35 Score=47.55 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=24.8
Q ss_pred EEEeeccCCChhhhhhhhhcc---ccCCeeeEEEEEcCc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGY 932 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR---kt~G~i~G~I~inG~ 932 (991)
+.|+|.+|+|||||+.-+.-- .|.|..+=.+.+++.
T Consensus 9 illlG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~ 47 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKV 47 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcE
Confidence 579999999999999987422 245655444444443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.47 E-value=0.31 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++|||..|+|||||++-+.....|+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC
Confidence 6899999999999999876544444
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.39 E-value=0.18 Score=49.99 Aligned_cols=20 Identities=50% Similarity=0.670 Sum_probs=18.4
Q ss_pred EeeccCCChhhhhhhhhccc
Q 001957 899 LMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 899 LmG~SGAGKTTLldvLagRk 918 (991)
|-||+|.|||||..+||+..
T Consensus 40 l~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 40 LFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.17 E-value=0.25 Score=48.30 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.9
Q ss_pred eCCeEEEEeeccCCChhhhhhhhh
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLa 915 (991)
||-.-+|++|..+||||||++.|.
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHH
Confidence 455568999999999999999995
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.16 E-value=0.25 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.6
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+|++|...||||||+|.|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=82.02 E-value=0.25 Score=48.01 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.6
Q ss_pred EEEEeeccCCChhhhhhhhh
Q 001957 896 LTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLa 915 (991)
++||-|.+||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.78 E-value=0.35 Score=47.83 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999987654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.67 E-value=0.34 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
-+++.||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478899999999999999998654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=0.35 Score=46.83 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+|+||||.|||++..-|+.+..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 57999999999999999998753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.48 E-value=0.48 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
-++|+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.30 E-value=0.25 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=18.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL 195 (991)
+.|+++. .| -++|.|++||||||.|
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 4477653 34 3779999999999765
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.3 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.9
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+|.....++||+|.|||.|...||--
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHhh
Confidence 45556779999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.14 E-value=0.23 Score=48.82 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.0
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
.-|-||+|+||||+..+||.-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 347899999999999999844
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.02 E-value=0.29 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.5
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
.+|++|..+||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.24 Score=49.12 Aligned_cols=38 Identities=34% Similarity=0.568 Sum_probs=25.5
Q ss_pred EEEEeeccCCChhhhhhhhhccccC---Ceee---EEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTG---GYIT---GNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~---G~i~---G~I~inG~~ 933 (991)
++-|-|.=||||||||+-|...+.+ +.|. |++-|++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~ 48 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 48 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred EEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhh
Confidence 5678899999999999988654322 2343 555555543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.64 E-value=0.42 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=80.50 E-value=0.31 Score=47.52 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEeeccCCChhhhhhhhh
Q 001957 896 LTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLa 915 (991)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.21 E-value=0.35 Score=52.35 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001957 180 LTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~La 199 (991)
-++|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 58999999999999987544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.18 E-value=0.26 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEeeccCCChhhhhhhhhcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagR 917 (991)
.-|-||+|+|||||..+||..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 458899999999999999965
|