Citrus Sinensis ID: 001966
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 989 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIT7 | 974 | Pentatricopeptide repeat- | yes | no | 0.915 | 0.929 | 0.372 | 1e-179 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.846 | 0.922 | 0.284 | 1e-100 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.894 | 0.807 | 0.261 | 2e-94 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.537 | 0.712 | 0.337 | 2e-90 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.674 | 0.874 | 0.287 | 9e-88 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.741 | 0.874 | 0.281 | 9e-86 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.741 | 0.841 | 0.291 | 6e-85 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.653 | 0.816 | 0.289 | 8e-85 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.850 | 0.919 | 0.261 | 4e-84 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.615 | 0.835 | 0.307 | 1e-83 |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 629 bits (1623), Expect = e-179, Method: Compositional matrix adjust.
Identities = 374/1003 (37%), Positives = 562/1003 (56%), Gaps = 98/1003 (9%)
Query: 10 HVLNARTRPMPTRRFSSQTQ-LTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIR 68
L R + R FS + L++ A +I IL Q +W+ L SSN+ ++NP+V+
Sbjct: 10 RTLVTRANFLLFRSFSVNVEKLSDASA---EIAGILKQENWRDTLVSSNLSIEINPEVVL 66
Query: 69 SVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128
SV+ R + ++LLSFF+W + Q T Q L S L + LCN + A ++V+RMI
Sbjct: 67 SVLRSKRVDDPSKLLSFFNWVDSQKVTEQK-LDSFSFLALDLCNFGSFEKALSVVERMI- 124
Query: 129 DGNNSGFEILSAVDGCFRESDEFVCK---GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCE 185
+ N E+ S++ C S EFV K G++F +L DGY G ++EAV +F G E
Sbjct: 125 ERNWPVAEVWSSIVRC---SQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLE 181
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245
VP L C LL LL+ +++LFW V+ M + N FDV +Y +I A+ + N +
Sbjct: 182 LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV---VFDVKTYHMLIIAHCRAGNVQ 238
Query: 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305
GK V + EK R AT NV D A++LK SM+ KGLVP YTY LI
Sbjct: 239 LGKDVLFKT-EKEFR--TATLNV-----------DGALKLKESMICKGLVPLKYTYDVLI 284
Query: 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQ 365
G KRL D + +L E+ G+ LD Y LIDG +K + + A + E+V+ G
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFEL 425
I +Y+ + K G MEKA+ + + +I G+ P ++ Y SLI+GYCR + + +EL
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404
Query: 426 LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485
L EMKK+N+V S +TYG ++ G+C GDL I+ EMI G +PN +IYT L+ T+ +
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Query: 486 KNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545
++ +A ++++ M+ +GI PD+ C+NSLIIGL KAKRMDEAR +LVEM+ GLKPN +
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524
Query: 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCML 605
+ AFI GY A E +A ++ EM G++PN V+ T +++ YCK+G + EA S +R M+
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 606 ARGIL-----------------------------------PEVQTYSVLINGLSKKLELR 630
+GIL P+V +Y VLING SK ++
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLI 690
+A IF E++E+GL P+V YN L+ FC+ +++KA +L +EM KG+ PN +TY +I
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA 750
DG+CK+GDL E F+LFDEM +G+ D VY L+ GCC+ +E+A+ +F + +
Sbjct: 705 DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCAS 764
Query: 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN----PNHDTYTTLINQYCKVQNMEKA 806
ST FN LI ++ K + ++L+ +++ + PN TY +I+ CK N+E A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAA 824
Query: 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA 866
K+LF +MQ NL P ITY SLLNGY++MG R+E+F VF+E + GIEPD+ Y V+I+A
Sbjct: 825 KELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINA 884
Query: 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926
KEG +AL L D +F K + G +L
Sbjct: 885 FLKEGMTTKALVLVDQMFAKNAV------------------------------DDGCKLS 914
Query: 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969
++CR + + F + G M+ A KV+E M ++ +S ++ +++
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 259/910 (28%), Positives = 445/910 (48%), Gaps = 73/910 (8%)
Query: 1 MRALTRASSHVLNA-RTRPMPTRRFSSQTQLTEQEATVRQITSILT-QNDWQRLLTSSNV 58
+R++T SSH N+ R + ++ E + V + I+ + W+ L+S V
Sbjct: 7 IRSIT--SSHFRNSFRNVSSVIDSAQEECRIAEDKQFVDAVKRIVRGKRSWEIALSSELV 64
Query: 59 PKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGP 118
++L + ++ + + L FF++ G + +L L ++ P
Sbjct: 65 SRRLKTVHVEEIL-IGTIDDPKLGLRFFNFLGLHRGF-DHSTASFCILIHALVKANLFWP 122
Query: 119 ASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCK---GLVFNMLIDGY-RKIGLLDEA 174
AS++++ ++ ++ + + C+ + CK F++LI Y R +LD
Sbjct: 123 ASSLLQTLLLRALKPS-DVFNVLFSCYEK-----CKLSSSSSFDLLIQHYVRSRRVLDGV 176
Query: 175 VDLFLCDTGCEFVPSLFSCNALLRDLLK----GKKMELFWKVWAKMNKMNAGGFEFDVYS 230
+ + T +P + + +ALL L+K G MELF N M + G DVY
Sbjct: 177 LVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELF-------NDMVSVGIRPDVYI 229
Query: 231 YTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290
YT VI + ++++ K + + M GC N+ YNV+I GLC+ V EAV +K +
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289
Query: 291 EKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVE 350
K L PD TY L+YG + ++ E++ A +L++G K+G +E
Sbjct: 290 GKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIE 349
Query: 351 EAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLI 410
EA + +V G +L +YN L+ CK K +A + + + ++G+ PN TY+ LI
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILI 409
Query: 411 QGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470
+CR K+ +A L EM L SV+ Y +I+G C GD+ + EMI + L+
Sbjct: 410 DMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLE 469
Query: 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIY 530
P + YT+L+ Y K K+ +A +L M +GI P + F +L+ GL +A + +A
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529
Query: 531 LVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP-------------- 576
EM +KPN ++ I GYC G+M A F EM G+VP
Sbjct: 530 FNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCL 589
Query: 577 ---------------------NDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQT 615
N++ YT ++ G+C+EG + EA+S + M+ RG+ ++
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC 649
Query: 616 YSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMC 675
Y VLI+G K + + G+ E+ ++GL PD Y S+I + K D +AF +++ M
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 676 EKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC------ 729
+G PN +TY +I+G CKAG + E L +M P+ SV N + GC
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ----PVS-SVPNQVTYGCFLDILTK 764
Query: 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789
E +++A+EL +L+ LA+T ++N LI C +++EA +L+ M+ + V+P+ T
Sbjct: 765 GEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCIT 824
Query: 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEML 849
YTT+IN+ C+ +++KA +L+ M ++ ++P + Y +L++G G + + EML
Sbjct: 825 YTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884
Query: 850 GKGIEPDNFT 859
+G+ P+N T
Sbjct: 885 RQGLIPNNKT 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 260/994 (26%), Positives = 445/994 (44%), Gaps = 109/994 (10%)
Query: 83 LSFFHWSERQMG-TCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAV 141
L F W +Q G + ++++ + +L +MY PA I+K + S F + A+
Sbjct: 54 LKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSF-VFGAL 112
Query: 142 DGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLL 201
+R + V+++LI Y + G++ +++++F F PS+++CNA+L ++
Sbjct: 113 MTTYRLCNS---NPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV 169
Query: 202 KGKKMELFWKVWAKM--------------------------------NKMNAGGFEFDVY 229
K + W +M KM G+ +
Sbjct: 170 KSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIV 229
Query: 230 SYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSM 289
+Y TV+ Y K + + M KG +V TYN++I LCR + + L M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289
Query: 290 VEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDV 349
++ + P+ TY LI GFS ++ +L+E++ GL + V + ALIDG + +G+
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349
Query: 350 EEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSL 409
+EA ++ + A G V Y LL G CK+ + + AR + R G+ TYT +
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 409
Query: 410 IQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGL 469
I G C+ + A LL+EM K + P + TY +I+G C G + I+ + GL
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469
Query: 470 KPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARI 529
PN IIY+ L+ + L+EA ++ E M EG T D FN L+ LCKA ++ EA
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529
Query: 530 YLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP------------- 576
++ M G+ PN SF I GY +GE A F+EM G P
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589
Query: 577 ----------------------NDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQ 614
+ V+Y +++ CK GN+A+A+S F M+ R ILP+
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649
Query: 615 TYSVLINGLSKK-------LELREA---------------------------LGIFL--E 638
TY+ LI+GL +K L +EA GI+ +
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709
Query: 639 LLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGD 698
+ G PD+ T N++I + ++ ++K L EM + PN TYN+L+ G+ K D
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 769
Query: 699 LTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNT 757
++ F L+ + G+ D ++L+ G C+ LE L++ + + +G+ +FN
Sbjct: 770 VSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNM 829
Query: 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817
LI C + ++ A L+ M ++ + DT +++ + ++++ + EM ++
Sbjct: 830 LISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQG 889
Query: 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877
+ P + Y L+NG R+G+ FVV EEM+ I P N M+ A K G EA
Sbjct: 890 ISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEAT 949
Query: 878 KLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937
L + ++ + ++ ++ CK EAL L M G +L S +
Sbjct: 950 LLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009
Query: 938 LREGVMDYAAKVLECMASFGWVSNSISLADIVKG 971
+G M A ++ E M G+++N+ + +++G
Sbjct: 1010 CAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/548 (33%), Positives = 304/548 (55%), Gaps = 16/548 (2%)
Query: 205 KMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKV-RNAEEGKRVFSEMGEKGCRPNV 263
++ L K + ++ A GF V SY V+DA + RN + VF EM E PNV
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205
Query: 264 ATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSE 323
TYN++I G C G +D A+ L + M KG +P+ TY LI G+ +++ D +L
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 324 LIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGK 383
+ KGL+ + ++Y +I+G ++G ++E V E+ G +D V YNTL+KG+CK G
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 384 MEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGV 443
+A + E++R G+ P+ TYTSLI C+ M A E LD+M+ + L P+ TY
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 444 IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREG 503
++DG G + + +L EM G P+ + Y L++ + K+++A ++E M+ +G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 504 ITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAG 563
++PDV +++++ G C++ +DEA EM+ +G+KP+ ++ + I G+C + A
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 564 RFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGL 623
+ EML GL P++ YT++++ YC EG++ +A+ M+ +G+LP+V TYSVLINGL
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Query: 624 SKKLELREALGIFLELLEKGLVPDVDTYN---------------SLITSFCKICDVDKAF 668
+K+ REA + L+L + VP TY+ SLI FC + +A
Sbjct: 566 NKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEAD 625
Query: 669 QLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGC 728
Q++E M K +P+ YN++I G C+AGD+ + + L+ EM K G L AL+
Sbjct: 626 QVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKAL 685
Query: 729 CKEEKLEQ 736
KE K+ +
Sbjct: 686 HKEGKVNE 693
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 194/674 (28%), Positives = 337/674 (50%), Gaps = 7/674 (1%)
Query: 231 YTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290
Y + Y + +E VF M C P V +YN ++ L G+ D+A ++ M
Sbjct: 79 YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR 138
Query: 291 EKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVE 350
++G+ PD Y++ + F R +L+ + +G +++ VAY ++ GF ++
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198
Query: 351 EAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLI 410
E + + +++ASG + L +N LL+ CK G +++ ++L+++I+ G+ PN TY I
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 411 QGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470
QG C+ ++ A ++ + ++ P V TY +I GLC ++ LG+M+ GL+
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE 318
Query: 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIY 530
P++ Y L++ Y K +Q A ++V G PD + SLI GLC + A
Sbjct: 319 PDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALAL 378
Query: 531 LVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590
E L +G+KPN+ + I G G + A + NEM GL+P + +V+G CK
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCK 438
Query: 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT 650
G +++A + M+++G P++ T+++LI+G S +L++ AL I +L+ G+ PDV T
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498
Query: 651 YNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710
YNSL+ CK + + Y+ M EKG PN T+N+L++ C+ L E L +EM
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMK 558
Query: 711 KRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLE--KGLASTLSFNTLIEFLCISNKL 768
+ V D + L+ G CK L+ A LFR M E K +ST ++N +I +
Sbjct: 559 NKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNV 618
Query: 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSL 828
A +L M++ + P+ TY +++ +CK N+ + LEM + P+ T +
Sbjct: 619 TMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRV 678
Query: 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRM 888
+N E + M+ KG+ P+ +D K+ L L+DL+ K+
Sbjct: 679 INCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDVD---KKEVAAPKLVLEDLL--KKS 733
Query: 889 PISAEAYKAIIKAL 902
I+ AY+ + L
Sbjct: 734 CITYYAYELLFDGL 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 230/817 (28%), Positives = 379/817 (46%), Gaps = 84/817 (10%)
Query: 2 RALTRASSHVLNARTRPMPTRRFSSQTQLTEQEATV-----------RQITSILTQNDWQ 50
R S ++ RP + SS L E+ ++V +Q+ ++L+ ++
Sbjct: 48 RKCFHTSRYLQQCVHRPDKSEETSSDRHLHERLSSVLSKRSLDYEQCKQLITVLSPLEFD 107
Query: 51 RLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVL 110
RL K+NP L FF + L+ LL +L
Sbjct: 108 RLF--PEFRSKVNPKTA---------------LDFFRLASDSFSF-SFSLRSYCLLIGLL 149
Query: 111 CNCKMYGPASAIVKRMIS-----------DGNNSGFEILSAVDGCFRESDEFVCKGLVFN 159
+ + A ++ R+I+ D + + ++++ CF E L+
Sbjct: 150 LDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIE 209
Query: 160 MLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKM 219
+ +++ G A+D+F PS +CN LL L++ + + + + + K
Sbjct: 210 VYCTQFKRDGCY-LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK- 267
Query: 220 NAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFV 279
G DVY +TT I+A+ K EE ++FS+M E G PNV T+N VI GL G
Sbjct: 268 ---GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 324
Query: 280 DEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339
DEA K MVE+G+ P TY L+ G + AKR+GD VL E+ KG + + Y L
Sbjct: 325 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
Query: 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGI 399
ID F++ G + +A +KD +V+ G + YNTL+KG+CK+G+ + A +L E++ +G
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444
Query: 400 EPNSRTYTS-----------------------------------LIQGYCRMRKMVSAFE 424
N ++TS LI G C+ K A E
Sbjct: 445 NVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALE 504
Query: 425 LLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYF 484
L + K V T ++ GLC G L + I E++ RG + + Y L+S
Sbjct: 505 LWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCC 564
Query: 485 KKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIH 544
K KL EA ++ M + G+ PD ++ LI GL +++EA + + R G+ P+++
Sbjct: 565 GKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVY 624
Query: 545 SFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCM 604
++ I G C A + FF+EM++ + PN V+Y ++ YC+ G ++ A+ M
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684
Query: 605 LARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664
+GI P TY+ LI G+S + EA +F E+ +GL P+V Y +LI + K+ +
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 744
Query: 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724
K L EM K V PN +TY V+I G+ + G++TE +L +EM ++G+ D Y
Sbjct: 745 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 804
Query: 725 LSGCCKEEKLEQALELFRDMLEKGLASTL-SFNTLIE 760
+ G K+ + LE F+ E+ A+ + +N LI+
Sbjct: 805 IYGYLKQGGV---LEAFKGSDEENYAAIIEGWNKLIQ 838
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (809), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 215/738 (29%), Positives = 359/738 (48%), Gaps = 5/738 (0%)
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245
F PS+ +C ++ +K K+ + V M K F +YTT+I A+ V +++
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK---FRPAFSAYTTLIGAFSAVNHSD 185
Query: 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305
+F +M E G P V + +I G + G VD A+ L + M L D Y I
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCI 245
Query: 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQ 365
F ++ E+ GLK D V Y ++I K ++EA + + L +
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFEL 425
YNT++ G+ +GK ++A +L G P+ Y ++ +M K+ A ++
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKV 365
Query: 426 LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485
+EMKK + P++ TY ++ID LC G L + M GL PN +V K
Sbjct: 366 FEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 486 KNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545
KL EA + E M + TPD F SLI GL K R+D+A +ML + N
Sbjct: 425 SQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIV 484
Query: 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCML 605
+ + I + G + + + +M+N P+ + + +D K G + + F +
Sbjct: 485 YTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIK 544
Query: 606 ARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVD 665
AR +P+ ++YS+LI+GL K E +F + E+G V D YN +I FCK V+
Sbjct: 545 ARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVN 604
Query: 666 KAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725
KA+QL EEM KG EP +TY +IDG K L E + LF+E + + L+ +Y++L+
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI 664
Query: 726 SGCCKEEKLEQALELFRDMLEKGLASTL-SFNTLIEFLCISNKLQEAHQLLDAMLEEQVN 784
G K ++++A + ++++KGL L ++N+L++ L + ++ EA +M E +
Sbjct: 665 DGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCT 724
Query: 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVV 844
PN TY LIN CKV+ KA + EMQ++ +KP+TI+Y ++++G + GN +E +
Sbjct: 725 PNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGAL 784
Query: 845 FEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904
F+ G PD+ Y MI+ M+A L + + +PI + ++ L K
Sbjct: 785 FDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHK 844
Query: 905 REEYSEALRLLNEMGESG 922
+ +A + + E+G
Sbjct: 845 NDCLEQAAIVGAVLRETG 862
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 189/653 (28%), Positives = 329/653 (50%), Gaps = 7/653 (1%)
Query: 316 DVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQI--DLVIYNT 373
D R V EL+ +G + + R A +++ DL Y
Sbjct: 33 DARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGI 92
Query: 374 LLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFEL-LDEMKKK 432
L+ C++G+++ L +I+ G ++ +T L++G C ++ A ++ L M +
Sbjct: 93 LIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTEL 152
Query: 433 NLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITR---GLKPNAIIYTNLVSTYFKKNKL 489
+P+VF+Y +++ GLC ++ +L M G P+ + YT +++ +FK+
Sbjct: 153 GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 490 QEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAF 549
+A M GI PDV +NS+I LCKA+ MD+A L M++ G+ P+ ++ +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGI 609
+ GYC +G+ + A F +M + G+ P+ V Y+ ++D CK G EA F M RG+
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332
Query: 610 LPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669
PE+ TY L+ G + K L E G+ ++ G+ PD ++ LI ++ K VD+A
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392
Query: 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC 729
++ +M ++G+ PN +TY +I CK+G + + F++M G+ VYN+L+ G C
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452
Query: 730 KEEKLEQALELFRDMLEKGLA-STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD 788
K E+A EL +ML++G+ +T+ FN++I+ C ++ E+ +L + M+ V PN
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVI 512
Query: 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848
TY TLIN YC M++A +L M LKP T+TY +L+NGY ++ + V+F+EM
Sbjct: 513 TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572
Query: 849 LGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY 908
G+ PD TY +++ + A +L I + I Y I+ LCK +
Sbjct: 573 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632
Query: 909 SEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961
+AL++ + +L + + + L+ G D A + +S G V N
Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 231/883 (26%), Positives = 428/883 (48%), Gaps = 42/883 (4%)
Query: 18 PMPTRRFSSQT----QLTEQEA----TVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRS 69
P+ R+F S + L E+E+ ++ SIL++ +W + + ++ ++P + S
Sbjct: 36 PVTRRQFCSVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSS 95
Query: 70 VIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISD 129
+ L+ + L+F HW Q ++ + + L +L N G I MI
Sbjct: 96 LFSLDL--DPKTALNFSHWIS-QNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKS 152
Query: 130 GNNSGFEILSAVDGCFR----ESDEFVCKGLV--FNMLIDGYRKIGLLDEAVDLFLCDTG 183
++ G + L +D C + E E K ++ +N L++ + GL+DE +++
Sbjct: 153 CDSVG-DALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLE 211
Query: 184 CEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRN 243
+ P++++ N ++ K +E + ++K+ G + D ++YT++I Y + ++
Sbjct: 212 DKVCPNIYTYNKMVNGYCKLGNVE---EANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268
Query: 244 AEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVN 303
+ +VF+EM KGCR N Y +I GLC +DEA++L M + P TY
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328
Query: 304 LIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASG 363
LI ++R + ++ E+ G+K + Y LID Q E+A + +++ G
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 364 NQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAF 423
+++ YN L+ G+CK G +E A +V+ + + PN+RTY LI+GYC+ + A
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAM 447
Query: 424 ELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTY 483
+L++M ++ ++P V TY +IDG C G+ +L M RGL P+ YT+++ +
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Query: 484 FKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNI 543
K +++EA L + + ++G+ P+V + +LI G CKA ++DEA + L +ML + PN
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567
Query: 544 HSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRC 603
+F A I G C G+++ A +M+ GL P T ++ K+G+ A S+F+
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQ 627
Query: 604 MLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICD 663
ML+ G P+ TY+ I ++ L +A + ++ E G+ PD+ TY+SLI + +
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
Query: 664 VDKAFQLYEEMCEKGVEPNTLTYNVLIDG---------------FCKAGDLTE---PFQL 705
+ AF + + M + G EP+ T+ LI C ++ E +L
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747
Query: 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLE-KGLA-STLSFNTLIEFLC 763
++M + V + Y L+ G C+ L A ++F M +G++ S L FN L+ C
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807
Query: 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI 823
K EA +++D M+ P ++ LI K E+ +F + Q +
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867
Query: 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA 866
++ +++G + G + +F M G + + TY ++I+
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 190/617 (30%), Positives = 322/617 (52%), Gaps = 8/617 (1%)
Query: 103 LSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLI 162
LS + +L A + + RMI S EI++++D F VF++LI
Sbjct: 116 LSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGS---NDSVFDLLI 172
Query: 163 DGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAG 222
Y + L EA + F F S+ +CNAL+ L++ +EL W V+ ++++ G
Sbjct: 173 RTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVG 232
Query: 223 GFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEA 282
+VY+ +++A K E+ S++ EKG P++ TYN +I G ++EA
Sbjct: 233 ---INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 283 VELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDG 342
EL N+M KG P YTY +I G + + V +E++ GL D+ Y +L+
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 343 FVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPN 402
K+GDV E +V ++ + DLV +++++ F +SG ++KA N + G+ P+
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409
Query: 403 SRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILG 462
+ YT LIQGYCR + A L +EM ++ V TY I+ GLC L + + +
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469
Query: 463 EMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAK 522
EM R L P++ T L+ + K LQ A +L ++M+ + I DV +N+L+ G K
Sbjct: 470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529
Query: 523 RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYT 582
+D A+ +M+ + + P S+ + C G + A R ++EM++ + P +I
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 583 SIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK 642
S++ GYC+ GN ++ S M++ G +P+ +Y+ LI G ++ + +A G+ ++ E+
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEE 649
Query: 643 --GLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLT 700
GLVPDV TYNS++ FC+ + +A + +M E+GV P+ TY +I+GF +LT
Sbjct: 650 QGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLT 709
Query: 701 EPFQLFDEMTKRGVPLD 717
E F++ DEM +RG D
Sbjct: 710 EAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 989 | ||||||
| 359485848 | 1011 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.956 | 0.543 | 0.0 | |
| 296085044 | 973 | unnamed protein product [Vitis vinifera] | 0.940 | 0.955 | 0.507 | 0.0 | |
| 224134148 | 1041 | predicted protein [Populus trichocarpa] | 0.980 | 0.931 | 0.459 | 0.0 | |
| 255540069 | 1151 | pentatricopeptide repeat-containing prot | 0.943 | 0.810 | 0.471 | 0.0 | |
| 147862640 | 1024 | hypothetical protein VITISV_033285 [Viti | 0.953 | 0.920 | 0.463 | 0.0 | |
| 449507709 | 999 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.937 | 0.437 | 0.0 | |
| 449451896 | 1032 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.907 | 0.421 | 0.0 | |
| 359475765 | 935 | PREDICTED: pentatricopeptide repeat-cont | 0.753 | 0.796 | 0.447 | 0.0 | |
| 296087509 | 718 | unnamed protein product [Vitis vinifera] | 0.688 | 0.948 | 0.457 | 0.0 | |
| 18424537 | 974 | pentatricopeptide repeat-containing prot | 0.915 | 0.929 | 0.372 | 1e-177 |
| >gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/1019 (54%), Positives = 732/1019 (71%), Gaps = 52/1019 (5%)
Query: 14 ARTRPMPTR--RFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVI 71
A+ RP+ + FSS LT+ E +VR+IT++L ++WQ L+ SS++PKKLN D+IRSVI
Sbjct: 2 AKPRPISHKAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIRSVI 61
Query: 72 HLNRAHNLTRLLSFFHWSERQMGT--CQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISD 129
N+ + RLL+FF+WS+ +MGT Q DL VLS L V LCN YGPAS ++K +I +
Sbjct: 62 LQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCIIRN 121
Query: 130 GNNSGFEILSAVDGCFRESDEFVCKG----LVFNMLIDGYRKIGLLDEAVDLFLCDTGCE 185
++S +L ++ C+R C G ++F+ML+D YRK+G L EAV++FL E
Sbjct: 122 -SDSPLAVLGSIVKCYRS-----CNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFE 175
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245
F PSL SCN+LL DLLKG K+ELFWKV+ + M A DVY+YT +I A+ KV N +
Sbjct: 176 FRPSLLSCNSLLGDLLKGNKVELFWKVF---DGMCAHKVLPDVYTYTNMISAHCKVGNVK 232
Query: 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305
+ KRV EMGEKGC PN+ TYNV+IGGLCR +DEA+ELK SMV+KGLVPD YTY LI
Sbjct: 233 DAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILI 292
Query: 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQ 365
GF KR + +L+L E+I GLK + + Y ALIDGF++QGD+E+AFR+KDE+VA G +
Sbjct: 293 NGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIE 352
Query: 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFEL 425
+L+I+NTLL G CK+GKMEKA E++ E++ G+EP+S+TY+ LI+G+CR + M AFEL
Sbjct: 353 ANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412
Query: 426 LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485
LDEMKK+ L P+V TY VII+GLC CG+L+ NAIL EM+ GLKPNA++YT L++ + K
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472
Query: 486 KNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545
+ +++E+ ++ERMR +GI PDV C+NSLIIG CKAKRM+EAR YL+EML R L+PN H+
Sbjct: 473 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532
Query: 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCML 605
+ AFI GY AGEM+ A R+FNEML+ G++PN IYT++++G+CKEGN+ EA S FR +L
Sbjct: 533 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 592
Query: 606 ARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVD 665
+R +L +VQTYSVLI+GLS+ ++ EA GIF EL EKGL+P+ TYNSLI+ CK +VD
Sbjct: 593 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 652
Query: 666 KAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDL-------------------------- 699
KA QL EEMC KG+ P+ +TYN+LIDG CKAG++
Sbjct: 653 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712
Query: 700 ---------TEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA 750
T FQL +EM RGVP D +YN +L+ CCKEEK E+AL+LF++MLEKG A
Sbjct: 713 DGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA 772
Query: 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLF 810
ST+SFNTLIE C S KLQEA+ LL+ M+E+Q PNH TYT+LI+ CK M +AK+L+
Sbjct: 773 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 832
Query: 811 LEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKE 870
LEMQ+RN+ P TY SLL+GY+ +GN SEV +FEEM+ KGIEPD TYYVMIDA+C+E
Sbjct: 833 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCRE 892
Query: 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930
GNVMEA KLKD I K MP+S AY A+I+ALCK+EE+ E L+LLNE+GESGFRLG +C
Sbjct: 893 GNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTC 952
Query: 931 RTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQTA 989
+A F G MD AA+VL M FGWVSN+ SL D+V G +G + ++S +L+KQ A
Sbjct: 953 SVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1029 (50%), Positives = 695/1029 (67%), Gaps = 99/1029 (9%)
Query: 4 LTRASSHVLNARTRPMPTR--RFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKK 61
+ R + A+ RP+ + FSS LT+ E +VR+IT++L ++WQ L+ SS++PKK
Sbjct: 1 MWRLTCRSFMAKPRPISHKAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKK 60
Query: 62 LNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGT--CQNDLKVLSLLFVVLCNCKMYGPA 119
LN D+IRSVI N+ + RLL+FF+WS+ +MGT Q DL VLS L V LCN YGPA
Sbjct: 61 LNTDIIRSVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPA 120
Query: 120 SAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKG----LVFNMLIDGYRKIGLLDEAV 175
S ++K +I + ++S +L ++ C+R C G ++F+ML+D YRK+G L EAV
Sbjct: 121 SDLIKCIIRN-SDSPLAVLGSIVKCYRS-----CNGSPNSVIFDMLMDSYRKMGFLVEAV 174
Query: 176 DLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVI 235
++FL EF PSL SCN+LL DLLKG K+ELFWKV+ + M A DVY+YT +I
Sbjct: 175 NVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF---DGMCAHKVLPDVYTYTNMI 231
Query: 236 DAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLV 295
A+ KV N ++ KRV EMGEK +DEA+ELK SMV+KGLV
Sbjct: 232 SAHCKVGNVKDAKRVLLEMGEKA------------------RLLDEAIELKRSMVDKGLV 273
Query: 296 PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRV 355
PD YTY LI GF KR + +L+L E+I GLK + + Y ALIDGF++QGD+E+AFR+
Sbjct: 274 PDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRI 333
Query: 356 KDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415
KDE+VA G + +L+I+NTLL G CK+GKMEKA E++ E++ G+EP+S+TY+ LI+G+CR
Sbjct: 334 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 393
Query: 416 MRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAII 475
+ M AFELLDEMKK+ L P+V TY VII+GLC CG+L+ NAIL EM+ GLKPNA++
Sbjct: 394 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVV 453
Query: 476 YTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEML 535
YT L++ + K+ +++E+ ++ERMR +GI PDV C+NSLIIG CKAKRM+EAR YL+EML
Sbjct: 454 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 513
Query: 536 RRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIA 595
R L+PN H++ AFI GY AGEM+ A R+FNEML+ G++PN IYT++++G+CKEGN+
Sbjct: 514 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 573
Query: 596 EAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLI 655
EA S FR +L+R +L +VQTYSVLI+GLS+ ++ EA GIF EL EKGL+P+ TYNSLI
Sbjct: 574 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633
Query: 656 TSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDL---------------- 699
+ CK +VDKA QL EEMC KG+ P+ +TYN+LIDG CKAG++
Sbjct: 634 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 693
Query: 700 -------------------TEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740
T FQL +EM RGVP D +YN +L+ CCKEEK E+AL+L
Sbjct: 694 PNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDL 753
Query: 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800
F++MLEKG AST+SFNTLIE C S KLQEA+ LL+ M+E+Q PNH TYT+LI+ CK
Sbjct: 754 FQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 813
Query: 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY 860
M +AK+L+LEMQ+RN+ P TY SLL+GY+ +GN SEV +FEEM+ KGIEPD TY
Sbjct: 814 GMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTY 873
Query: 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920
YVMIDA+C+EGNVMEA KLKD I K MP+ +
Sbjct: 874 YVMIDAYCREGNVMEACKLKDEILVKGMPM-----------------------------K 904
Query: 921 SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDE 980
SGFRLG +C +A F G MD AA+VL M FGWVSN+ SL D+V G +G + ++
Sbjct: 905 SGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSED 964
Query: 981 SKDLMKQTA 989
S +L+KQ A
Sbjct: 965 SDNLLKQMA 973
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa] gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1024 (45%), Positives = 664/1024 (64%), Gaps = 54/1024 (5%)
Query: 11 VLNARTRPMPTRRFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSV 70
L ART+ F S+TQ V +IT+ L Q +W+ LL V KL+PDV+ SV
Sbjct: 18 TLKARTQNRKANNFCSKTQ--NNSNIVNEITTFLNQKNWESLLPL--VSNKLSPDVVHSV 73
Query: 71 IHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDG 130
I + ++ RLL FF+W + QMG Q L+ S+L ++LCN +++ A ++V +MI
Sbjct: 74 I-TKQVNDPKRLLDFFNWVQFQMGFSQK-LQSFSILALILCNSRLFSRADSVVNQMIMMS 131
Query: 131 NNSGFEILSAVDGCFRESD----------EFVCKGLVFNMLIDGYRKIGLLDEAVDLFLC 180
+ EIL ++ +E D +G+VF +LIDGY+K GL DEAV FL
Sbjct: 132 SGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLG 191
Query: 181 DTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFK 240
FV L CN LL DLLK K+ELFW+ + M + N DVY+YT +I+A+F+
Sbjct: 192 AKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANV---LHDVYTYTHLINAHFR 248
Query: 241 VRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT 300
NA+EGKR+ EM EKGC P++ TYNVVIGGLCR G VDEA ELK M +KGLV D +T
Sbjct: 249 AGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFT 308
Query: 301 YVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELV 360
Y LI GF KR + +L+L E+ KGLK VAY ALIDGF++QGD EAFRVK+E++
Sbjct: 309 YSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEML 368
Query: 361 ASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMV 420
A G +++L YN L+KG CK G MEKA +LNE+I +GI+P+++TY ++I+GY + +
Sbjct: 369 ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTS 428
Query: 421 SAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLV 480
+LL EMKK NLVP+ +T G+II+GLC G + + + M++ G+KPNA+IYT L+
Sbjct: 429 RVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLI 488
Query: 481 STYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLK 540
+ ++ + QEA ++++ M ++G+ PDV C+NS+IIGLCK+++M+EA+ YLVEM+ RGLK
Sbjct: 489 KGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLK 548
Query: 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISK 600
PN++++ A I GYC +GEMQ A R+F EML G+ PNDV+ T+++DGYCKEG+ EA S
Sbjct: 549 PNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSI 608
Query: 601 FRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660
FRCML R + P+V+TYS LI+GL + +L+ A+ + E LEKGLVPDV TYNS+I+ FCK
Sbjct: 609 FRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCK 668
Query: 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVL------------------------------- 689
+ KAFQL+E MC+KG+ PN +TYN L
Sbjct: 669 QGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVT 728
Query: 690 ----IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDML 745
IDG+CK+G+L++ F+LFDEMT +GVP D VY+AL+ GC KE E+AL LF + +
Sbjct: 729 YATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESV 788
Query: 746 EKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805
+KG AST S N L++ C S K+ EA+QLL+ M+++ V P+H TYT LI+ +CK +++
Sbjct: 789 QKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKE 848
Query: 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865
A+Q F++MQ+RNL P +TY +LL+GYN G RSE+F +F+EM+ K IEPD T+ VMID
Sbjct: 849 AEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMID 908
Query: 866 AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925
AH KEG+ ++ LKL D + K +S +I LC++E SE L++L ++ E G L
Sbjct: 909 AHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNL 968
Query: 926 GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLM 985
A+C T+ F + G MD AA+VL+ M F WV +S L D++ E D + + D +
Sbjct: 969 SLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFL 1028
Query: 986 KQTA 989
KQ A
Sbjct: 1029 KQMA 1032
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/976 (47%), Positives = 647/976 (66%), Gaps = 43/976 (4%)
Query: 15 RTRPMPTRRFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVIHLN 74
RT + + FS+ + + TV++ITS+L Q +WQ L+ SS +P KLNPDV+ VI N
Sbjct: 23 RTHSIKSNSFSTNADTNQSDNTVKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQN 82
Query: 75 RAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSG 134
+ + RL FF+W + QN L S+L ++LCN ++G A+ +++RMI D N
Sbjct: 83 QVIDPKRLHGFFNWVNSRTVFSQN-LSTFSILSLILCNSGLFGNAANVLERMI-DTRNPH 140
Query: 135 FEILSAVDGCFRESD--EFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFS 192
+IL ++ C++E + +VF +LID YRK G L+EAV +FL EF+ L
Sbjct: 141 VKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLAC 200
Query: 193 CNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFS 252
CN+L +DLLKG ++ELFWKV+ M G DVY+YT +I+AY +V EEGK V
Sbjct: 201 CNSLSKDLLKGNRVELFWKVYKGM----LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLF 256
Query: 253 EMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312
+M EKGC PN+ TY+VVI GLCR G VDEA+ELK SM KGL+PD+Y Y LI GF K
Sbjct: 257 DMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQK 316
Query: 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYN 372
R + + +L E+ GLK D VAY ALI+GFVKQ D+ AF+VK+E+ A +++ Y
Sbjct: 317 RSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYY 376
Query: 373 TLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKK 432
L+ G CK G +EKA ++ +E+ MGI+P+ +TY LI+GY +++ M A+ELL E+KK+
Sbjct: 377 ALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436
Query: 433 NLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEA 492
NL + + G I++GLCHCGDL + N + EMI+ GLKPN +IYT +V K+ + +EA
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEA 496
Query: 493 GKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552
K++ M+ +G++PDV C+N++IIG CKA +M+E + YLVEM+ +GLKPN++++ AFI G
Sbjct: 497 IKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHG 556
Query: 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPE 612
YC AGEMQ A R F EML+SG+ PNDVI T ++DGYCK+GN +A +KFRCML +G+LP+
Sbjct: 557 YCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPD 616
Query: 613 VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYE 672
VQT+SVLI+GLSK +L+EA+G+F ELL+KGLVPDV TY SLI++ CK D+ AF+L++
Sbjct: 617 VQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHD 676
Query: 673 EMCEKGVEPNTLTYNVLIDGFCKAGD---------------------------------- 698
+MC+KG+ PN +TYN LI+G CK G+
Sbjct: 677 DMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSA 736
Query: 699 -LTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757
LTE FQLF M GVP D VY AL+ GCCK E+AL LF M+E+G+AST +FN
Sbjct: 737 NLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNA 796
Query: 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817
LI+ KL EA+QL++ M++ + PNH TYT LI +C V N+++A+QLF+EMQ+RN
Sbjct: 797 LIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRN 856
Query: 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877
+ P +TY SLL+GYNR+G RSE+F +F+EM+ +GI+PD+ + VM+DAH KEGN ++AL
Sbjct: 857 VMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKAL 916
Query: 878 KLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937
KL D + + + + Y +I ALCK SE L++L+E+ + G +L A+C T+ F
Sbjct: 917 KLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCF 976
Query: 938 LREGVMDYAAKVLECM 953
R G D A +VLE M
Sbjct: 977 HRAGRTDEALRVLESM 992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/985 (46%), Positives = 645/985 (65%), Gaps = 42/985 (4%)
Query: 38 RQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQ 97
+QI+ L QN+W+ ++ SS++P KLNPDVIR+V+H N+ + RLL FF+WS+ QMG Q
Sbjct: 45 QQISDFLKQNNWKTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQ 104
Query: 98 NDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLV 157
L S+L V LCN +++G A+ ++ +MI +S IL +V FR +V
Sbjct: 105 F-LDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSS-SILDSVLFWFRNYGG--SSPVV 160
Query: 158 FNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMN 217
F++LID Y+++G+LDEA ++F + SL CN+LL+DLLK MELFWKV+ M
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGML 220
Query: 218 KMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVG 277
G FDVY+YT ++ A K + KRV EM EKG PN Y++VI G+C+VG
Sbjct: 221 DAKMG---FDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVG 277
Query: 278 FVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYY 337
+DEAVELK SM EKGLVP++YTY + G AKR+ + +L E+ GLK D A
Sbjct: 278 DIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACS 337
Query: 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRM 397
ALIDGF+++GD++E R+KD +V+ G I+L+ YN L+ G CK GKMEKA E+L ++ +
Sbjct: 338 ALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTL 397
Query: 398 GIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQI 457
G +PNSRT+ LI+GYCR M A ELLDEM+K+NLVPS +YG +I+GLCHC DL
Sbjct: 398 GCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLA 457
Query: 458 NAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIG 517
N +L +M GLKPN ++Y+ L+ Y + +++EA +L++ M G+ PD+ C+N++I
Sbjct: 458 NKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC 517
Query: 518 LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN 577
L KA +M+EA YL+E+ RGLKP+ +F AFILGY G+M A ++F+EML+ GL+PN
Sbjct: 518 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577
Query: 578 DVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFL 637
+ +YT +++G+ K GN+ EA+S FR + A G+LP+VQT S I+GL K ++EAL +F
Sbjct: 578 NPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 637
Query: 638 ELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697
EL EKGLVPDV TY+SLI+ FCK +V+KAF+L++EMC KG+ PN YN L+DG CK+G
Sbjct: 638 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 697
Query: 698 DL-----------------------------------TEPFQLFDEMTKRGVPLDGSVYN 722
D+ E F LF EM +GV VYN
Sbjct: 698 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 757
Query: 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ 782
AL+ GCCKE +E+A+ LFR+ML+KG A+TLSFNTLI+ C S K+QEA QL M+ +Q
Sbjct: 758 ALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ 817
Query: 783 VNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842
+ P+H TYTT+I+ +CK ME+A LF EMQ+RNL T+TY SL+ GYN++G SEVF
Sbjct: 818 IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVF 877
Query: 843 VVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902
+FE+M+ KG++PD TY ++I AHCKE N++EA KL+D + K M + +I AL
Sbjct: 878 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 937
Query: 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962
CKRE+ +EA +LL+EMGE G + A+C T+ F G MD A +V E + S G V ++
Sbjct: 938 CKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDT 997
Query: 963 ISLADIVKGENSGVDLDESKDLMKQ 987
+L D+V G + D +++++L+KQ
Sbjct: 998 TTLIDLVNGNLNDTDSEDARNLIKQ 1022
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/949 (43%), Positives = 614/949 (64%), Gaps = 12/949 (1%)
Query: 24 FSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLL 83
FS+ + TVR+ + IL + DWQ LL + + +KLNP+++ SV+ + + RL
Sbjct: 45 FSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQ 104
Query: 84 SFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDG 143
+FFHWS +M T Q L S+L + LCN + A ++++++ EIL ++
Sbjct: 105 NFFHWSSSKMSTPQY-LHSYSILAIRLCNSGLIHQADNMLEKLLQT-RKPPLEILDSLVR 162
Query: 144 CFRESDEFVCKGL-VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLK 202
C+RE F L VF++ ID +R +G L+EA +F+ F P+L CN L+RDLLK
Sbjct: 163 CYRE---FGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLK 219
Query: 203 GKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN 262
M LFWKV+ M + DVY+YT VI A+ KV + +GK V SEM EK C+PN
Sbjct: 220 ANMMGLFWKVYGSMVE---AKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPN 275
Query: 263 VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLS 322
+ TYN IGGLC+ G VDEA+E+K M+EKGL PD +TY L+ GF KR + +L+
Sbjct: 276 LFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335
Query: 323 ELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG 382
+ GL + Y ALIDGF+K+G++EEA R+KDE++ G ++++V YN ++ G K+G
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395
Query: 383 KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYG 442
+M KA + NE++ GIEP++ TY LI GY + M A ELL EMK + L PS FTY
Sbjct: 396 EMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455
Query: 443 VIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRRE 502
V+I GLCH DL++ N +L +MI G+KPN +Y L+ Y ++++ + A +L++ M
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN 515
Query: 503 GITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTA 562
G+ PD+ C+N LIIGLC+AK+++EA++ LV+M +G+KPN H++ AFI Y +GE+Q A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575
Query: 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLING 622
R+F +ML+SG+VPN+VIYT ++ G+C GN EA+S F+CML +G++P+++ YS +I+
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHS 635
Query: 623 LSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN 682
LSK + +EA+G+FL+ L+ G+VPDV YNSLI+ FCK D++KA QLY+EM G+ PN
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695
Query: 683 TLTYNVLID--GFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740
+ YN LI+ G+CK+G+LTE F+LFDEM +G+ DG +Y L+ GC KE LE+AL L
Sbjct: 696 IVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 755
Query: 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800
F + +K + S +FN+LI+ C K+ EA +L D M+++++ PN TYT LI+ Y K
Sbjct: 756 FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKA 815
Query: 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY 860
+ ME+A+QLFL+M+ RN+ P T+TY SLL YN++GNR ++ +F++M +GI D Y
Sbjct: 816 EMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAY 875
Query: 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920
VM A+CKEG +EALKL + + + + + + A+I LCK ++ S L LL+EMG+
Sbjct: 876 GVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGK 935
Query: 921 SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969
L +C T+ F + G D A+KVL M GWV S+SL D +
Sbjct: 936 EELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSI 984
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/982 (42%), Positives = 614/982 (62%), Gaps = 45/982 (4%)
Query: 24 FSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLL 83
FS+ + TVR+ + IL + DWQ LL + + +KLNP+++ SV+ + + RL
Sbjct: 45 FSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRKLNPEIVCSVLQKSEIDDSVRLQ 104
Query: 84 SFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDG 143
+FF+WS +M T Q L S+L + LCN + A ++++++ EIL ++
Sbjct: 105 NFFYWSSSKMSTPQY-LHSYSILAIRLCNSGLIHQADNMLEKLLQT-RKPPLEILDSLVR 162
Query: 144 CFRESDEFVCKGL-VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLK 202
C+RE F L VF++ ID +R +G L+EA +F+ F P+L CN L+RDLLK
Sbjct: 163 CYRE---FGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLK 219
Query: 203 GKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN 262
M LFWKV+ M + DVY+YT VI A+ KV + +GK V SEM EK C+PN
Sbjct: 220 ANMMGLFWKVYGSMVE---AKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPN 275
Query: 263 VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLS 322
+ TYN IGGLC+ G VDEA+E+K M+EKGL PD +TY L+ GF KR + +L+
Sbjct: 276 LFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335
Query: 323 ELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG 382
+ GL + Y ALIDGF+K+G++EEA R+KDE++ G ++++V YN ++ G K+G
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395
Query: 383 KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYG 442
+M KA + NE++ G+EP++ TY LI GY + M A ELL EMK + L PS FTY
Sbjct: 396 EMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455
Query: 443 VIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRRE 502
V+I GLCH DL++ N +L +MI G+KPN +Y L+ Y ++++ + A +L++ M
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN 515
Query: 503 GITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTA 562
G+ PD+ C+N LIIGLC+AK+++EA++ LV+M +G+KPN H++ AFI Y +GE+Q A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575
Query: 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLING 622
R+F +ML+SG+VPN+VIYT ++ G+C GN EA+S F+CML +G++P+++ YS +I+
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHS 635
Query: 623 LSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN 682
LSK + +EA+G+FL+ L+ G+VPDV YNSLI+ FCK D++KA QLY+EM G+ PN
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695
Query: 683 TLTYNVL-----------------------------------IDGFCKAGDLTEPFQLFD 707
+ YN L IDG+CK+G+LTE F+LFD
Sbjct: 696 IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755
Query: 708 EMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767
EM +G+ DG +Y L+ GC KE LE+AL LF + +K + S +FN+LI+ C K
Sbjct: 756 EMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGK 815
Query: 768 LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRS 827
+ EA +L D M+++++ PN TYT LI+ Y K + ME+A+QLFL+M+ RN+ P T+TY S
Sbjct: 816 VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 875
Query: 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKR 887
LL YN++GNR ++ +F++M +GI D Y VM A+CKEG +EALKL + +
Sbjct: 876 LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935
Query: 888 MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAA 947
+ + + + A+I LCK ++ S L LL+EMG+ L +C T+ F + G D A+
Sbjct: 936 IKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEAS 995
Query: 948 KVLECMASFGWVSNSISLADIV 969
KVL M GWV S+SL D +
Sbjct: 996 KVLGVMQRLGWVPTSLSLTDSI 1017
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/813 (44%), Positives = 517/813 (63%), Gaps = 68/813 (8%)
Query: 229 YSYTTVIDAY-FKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVEL-- 285
YS ++++D+ F RN G P V ++++I R+G +DEA +
Sbjct: 135 YSSSSILDSVLFWFRNY------------GGSSPVV--FDILIDSYKRMGMLDEAANVFF 180
Query: 286 --KN--------------SMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGL 329
KN SM EKGLVP++YTY + G AKR+ + +L E+ GL
Sbjct: 181 VAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 240
Query: 330 KLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKARE 389
K D A ALIDGF+++GD++E R+KD +V+ G I+L+ YN L+ G CK GKMEKA E
Sbjct: 241 KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 300
Query: 390 VLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLC 449
+L +I +G +PNSRT+ LI+GYCR M A ELLDEM+K+NLVPS +YG +I+GLC
Sbjct: 301 ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 360
Query: 450 HCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVS 509
HC DL N +L +M GLKPN ++Y+ L+ Y + +++EA +L++ M G+ PD+
Sbjct: 361 HCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF 420
Query: 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEM 569
C+N++I L KA +M+EA YL+E+ RGLKP+ +F AFILGY G+M A ++F+EM
Sbjct: 421 CYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 480
Query: 570 LNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL 629
L+ GL+PN+ +YT +++G+ K GN+ EA+S FR + A G+LP+VQT S I+GL K +
Sbjct: 481 LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRV 540
Query: 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVL 689
+EAL +F EL EKGLVPDV TY+SLI+ FCK +V+KAF+L++EMC KG+ PN YN L
Sbjct: 541 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNAL 600
Query: 690 IDGFCKAGDL-----------------------------------TEPFQLFDEMTKRGV 714
+DG CK+GD+ E F LF EM +GV
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 660
Query: 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774
VYNAL+ GCCKE +E+A+ LFR+ML+KG A+TLSFNTLI+ C S K+QEA QL
Sbjct: 661 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQL 720
Query: 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834
M+ +Q+ P+H TYTT+I+ +CK ME+A LF EMQ+RNL T+TY SL+ GYN+
Sbjct: 721 FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK 780
Query: 835 MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894
+G SEVF +FE+M+ KG++PD TY ++I AHCKE N++EA KL+D + K M
Sbjct: 781 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 840
Query: 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954
+ +I ALCKRE+ +EA +LL+EMGE G + A+C T+ F G MD A +V E +
Sbjct: 841 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 900
Query: 955 SFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987
S G V ++ +L D+V G + D +++++L+KQ
Sbjct: 901 SLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQ 933
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/734 (45%), Positives = 473/734 (64%), Gaps = 53/734 (7%)
Query: 289 MVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGD 348
M EKGLVP++YTY + G AKR+ + +L E+ GLK D A ALIDGF+++GD
Sbjct: 1 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60
Query: 349 VEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTS 408
++E R+KD +V+ G I+L+ YN L+ G CK GKMEKA E+L +I +G +PNSRT+
Sbjct: 61 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120
Query: 409 LIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRG 468
LI+GYCR M A ELLDEM+K+NLVPS +YG +I+GLCHC DL N +L +M G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180
Query: 469 LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEAR 528
LKPN ++Y+ L+ Y + +++EA +L++ M G+ PD+ C+N++I L KA +M+EA
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240
Query: 529 IYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGY 588
YL+E+ RGLKP+ +F AFILGY G+M A ++F+EML+ GL+PN+ +YT +++G+
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGH 300
Query: 589 CKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDV 648
K GN+ EA+S FR + A G+LP+VQT S I+GL K ++EAL +F EL EKGLVPDV
Sbjct: 301 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360
Query: 649 DTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDL--------- 699
TY+SLI+ FCK +V+KAF+L++EMC KG+ PN YN L+DG CK+GD+
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420
Query: 700 --------------------------TEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEK 733
E F LF EM +GV VYNAL+ GCCKE
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 480
Query: 734 LEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793
+E+A+ LFR+ML+KG A+TLSFNTLI+ C S K+QEA QL M+ +Q+ P+H TYTT+
Sbjct: 481 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 540
Query: 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI 853
I+ +CK ME+A LF EMQ+RNL T VF +FE+M+ KG+
Sbjct: 541 IDWHCKAGKMEEANLLFKEMQERNLIVDT------------------VFALFEKMVAKGV 582
Query: 854 EPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913
+PD TY ++I AHCKE N++EA KL+D + K M + +I ALCKRE+ +EA +
Sbjct: 583 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 642
Query: 914 LLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGEN 973
LL+EMGE G + A+C T+ F G MD A +V E + S G V ++ +L D+V G
Sbjct: 643 LLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNL 702
Query: 974 SGVDLDESKDLMKQ 987
+ D +++++L+KQ
Sbjct: 703 NDTDSEDARNLIKQ 716
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61990, mitochondrial; Flags: Precursor gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana] gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 374/1003 (37%), Positives = 562/1003 (56%), Gaps = 98/1003 (9%)
Query: 10 HVLNARTRPMPTRRFSSQTQ-LTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIR 68
L R + R FS + L++ A +I IL Q +W+ L SSN+ ++NP+V+
Sbjct: 10 RTLVTRANFLLFRSFSVNVEKLSDASA---EIAGILKQENWRDTLVSSNLSIEINPEVVL 66
Query: 69 SVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128
SV+ R + ++LLSFF+W + Q T Q L S L + LCN + A ++V+RMI
Sbjct: 67 SVLRSKRVDDPSKLLSFFNWVDSQKVTEQK-LDSFSFLALDLCNFGSFEKALSVVERMI- 124
Query: 129 DGNNSGFEILSAVDGCFRESDEFVCK---GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCE 185
+ N E+ S++ C S EFV K G++F +L DGY G ++EAV +F G E
Sbjct: 125 ERNWPVAEVWSSIVRC---SQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLE 181
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245
VP L C LL LL+ +++LFW V+ M + N FDV +Y +I A+ + N +
Sbjct: 182 LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV---VFDVKTYHMLIIAHCRAGNVQ 238
Query: 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305
GK V + EK R AT NV D A++LK SM+ KGLVP YTY LI
Sbjct: 239 LGKDVLFKT-EKEFR--TATLNV-----------DGALKLKESMICKGLVPLKYTYDVLI 284
Query: 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQ 365
G KRL D + +L E+ G+ LD Y LIDG +K + + A + E+V+ G
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFEL 425
I +Y+ + K G MEKA+ + + +I G+ P ++ Y SLI+GYCR + + +EL
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404
Query: 426 LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485
L EMKK+N+V S +TYG ++ G+C GDL I+ EMI G +PN +IYT L+ T+ +
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Query: 486 KNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545
++ +A ++++ M+ +GI PD+ C+NSLIIGL KAKRMDEAR +LVEM+ GLKPN +
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524
Query: 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCML 605
+ AFI GY A E +A ++ EM G++PN V+ T +++ YCK+G + EA S +R M+
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 606 ARGIL-----------------------------------PEVQTYSVLINGLSKKLELR 630
+GIL P+V +Y VLING SK ++
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLI 690
+A IF E++E+GL P+V YN L+ FC+ +++KA +L +EM KG+ PN +TY +I
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA 750
DG+CK+GDL E F+LFDEM +G+ D VY L+ GCC+ +E+A+ +F + +
Sbjct: 705 DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCAS 764
Query: 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN----PNHDTYTTLINQYCKVQNMEKA 806
ST FN LI ++ K + ++L+ +++ + PN TY +I+ CK N+E A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAA 824
Query: 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA 866
K+LF +MQ NL P ITY SLLNGY++MG R+E+F VF+E + GIEPD+ Y V+I+A
Sbjct: 825 KELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINA 884
Query: 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926
KEG +AL L D +F K + G +L
Sbjct: 885 FLKEGMTTKALVLVDQMFAKNAV------------------------------DDGCKLS 914
Query: 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969
++CR + + F + G M+ A KV+E M ++ +S ++ +++
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 989 | ||||||
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.733 | 0.744 | 0.348 | 2.2e-150 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.876 | 0.955 | 0.275 | 3e-92 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.679 | 0.880 | 0.305 | 6.7e-88 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.752 | 0.854 | 0.291 | 2.7e-84 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.602 | 0.797 | 0.317 | 4.4e-84 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.813 | 0.914 | 0.263 | 6.5e-83 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.780 | 0.853 | 0.271 | 1.7e-82 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.712 | 0.967 | 0.295 | 2.2e-80 | |
| TAIR|locus:2034528 | 840 | AT1G31840 [Arabidopsis thalian | 0.787 | 0.927 | 0.271 | 2e-79 | |
| TAIR|locus:2165585 | 971 | AT5G57250 [Arabidopsis thalian | 0.728 | 0.741 | 0.286 | 4.2e-79 |
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 2.2e-150, Sum P(2) = 2.2e-150
Identities = 264/758 (34%), Positives = 425/758 (56%)
Query: 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVEL 285
FDV +Y +I A+ + N + GK V + EK R AT NV D A++L
Sbjct: 219 FDVKTYHMLIIAHCRAGNVQLGKDVLFKT-EKEFR--TATLNV-----------DGALKL 264
Query: 286 KNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVK 345
K SM+ KGLVP YTY LI G KRL D + +L E+ G+ LD Y LIDG +K
Sbjct: 265 KESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324
Query: 346 QGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRT 405
+ + A + E+V+ G I +Y+ + K G MEKA+ + + +I G+ P ++
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384
Query: 406 YTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMI 465
Y SLI+GYCR + + +ELL EMKK+N+V S +TYG ++ G+C GDL I+ EMI
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 466 TRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMD 525
G +PN +IYT L+ T+ + ++ +A ++++ M+ +GI PD+ C+NSLIIGL KAKRMD
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504
Query: 526 EARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIV 585
EAR +LVEM+ GLKPN ++ AFI GY A E +A ++ EM G++PN V+ T ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 586 DGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLV 645
+ YCK+G + EA S +R M+ +GIL + +TY+VL+NGL K ++ +A IF E+ KG+
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 646 PDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705
PDV +Y LI F K+ ++ KA +++EM E+G+ PN + YN+L+ GFC++G++ + +L
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA-STLSFNTLIEFLCI 764
DEM+ +G+ + Y ++ G CK L +A LF +M KGL + + TL++ C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 765 SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL----KP 820
N ++ A + ++ + + LIN K E ++ + + KP
Sbjct: 745 LNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803
Query: 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLK 880
+TY +++ + GN +F +M + P TY +++ + K G E
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP-- 861
Query: 881 DLIFDKRMPISAEA----YKAIIKALCKREEYSEALRLLNEMG-----ESGFRLGFASCR 931
+FD+ + E Y II A K ++AL L+++M + G +L ++CR
Sbjct: 862 --VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCR 919
Query: 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969
+ + F + G M+ A KV+E M ++ +S ++ +++
Sbjct: 920 ALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 245/889 (27%), Positives = 433/889 (48%)
Query: 1 MRALTRASSHVLNA-RTRPMPTRRFSSQTQLTEQEATVRQITSILT-QNDWQRLLTSSNV 58
+R++T SSH N+ R + ++ E + V + I+ + W+ L+S V
Sbjct: 7 IRSIT--SSHFRNSFRNVSSVIDSAQEECRIAEDKQFVDAVKRIVRGKRSWEIALSSELV 64
Query: 59 PKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGP 118
++L + ++ + + L FF++ G + +L L ++ P
Sbjct: 65 SRRLKTVHVEEIL-IGTIDDPKLGLRFFNFLGLHRGF-DHSTASFCILIHALVKANLFWP 122
Query: 119 ASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGY-RKIGLLDEAVDL 177
AS++++ ++ ++ + + C+ + + F++LI Y R +LD +
Sbjct: 123 ASSLLQTLLLRALKPS-DVFNVLFSCYEKCK--LSSSSSFDLLIQHYVRSRRVLDGVLVF 179
Query: 178 FLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDA 237
+ T +P + + +ALL L+K + L +++ N M + G DVY YT VI +
Sbjct: 180 KMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELF---NDMVSVGIRPDVYIYTGVIRS 236
Query: 238 YFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD 297
++++ K + + M GC N+ YNV+I GLC+ V EAV +K + K L PD
Sbjct: 237 LCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPD 296
Query: 298 SYTYVNLIYGFSAAKRLGDVRL-VLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356
TY L+YG + ++ L ++ E++ A +L++G K+G +EEA +
Sbjct: 297 VVTYCTLVYGLCKVQEF-EIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLV 355
Query: 357 DELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRM 416
+V G +L +YN L+ CK K +A + + + ++G+ PN TY+ LI +CR
Sbjct: 356 KRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRR 415
Query: 417 RKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIY 476
K+ +A L EM L SV+ Y +I+G C GD+ + EMI + L+P + Y
Sbjct: 416 GKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTY 475
Query: 477 TNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLR 536
T+L+ Y K K+ +A +L M +GI P + F +L+ GL +A + +A EM
Sbjct: 476 TSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAE 535
Query: 537 RGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596
+KPN ++ I GYC G+M A F EM G+VP+ Y ++ G C G +E
Sbjct: 536 WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASE 595
Query: 597 AISKFRCMLARGI--LPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSL 654
A F L +G L E+ Y+ L++G ++ +L EAL + E++++G+ D+ Y L
Sbjct: 596 A-KVFVDGLHKGNCELNEI-CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVL 653
Query: 655 ITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV 714
I K D F L +EM ++G++P+ + Y +ID K GD E F ++D M G
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713
Query: 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLE-KGLASTLSFNTLIEFLCISN-KLQEAH 772
+ Y A+++G CK + +A L M + + +++ ++ L +Q+A
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAV 773
Query: 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGY 832
+L +A+L+ + N TY LI +C+ +E+A +L M + P ITY +++N
Sbjct: 774 ELHNAILKGLL-ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINEL 832
Query: 833 NRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKD 881
R + + ++ M KGI PD Y +I C G + +A +L++
Sbjct: 833 CRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRN 881
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 207/678 (30%), Positives = 346/678 (51%)
Query: 250 VFSEMG-EKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEK-GLVPDSYTYVNLIYG 307
+F+ M E G + ++TY VI L G + E+ M E G YV +
Sbjct: 26 MFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKN 85
Query: 308 FSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQID 367
+ ++ + V + + +Y A++ V G ++A +V + G D
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 368 LVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLD 427
+ + +K FCK+ + A +LN + G E N Y +++ G+ +EL
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 428 EMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKN 487
+M + + T+ ++ LC GD+++ +L ++I RG+ PN Y + ++
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 488 KLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFR 547
+L A ++V + +G PDV +N+LI GLCK + EA +YL +M+ GL+P+ +++
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325
Query: 548 AFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR 607
I GYC G +Q A R + + +G VP+ Y S++DG C EG A++ F L +
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 608 GILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKA 667
GI P V Y+ LI GLS + + EA + E+ EKGL+P+V T+N L+ CK+ V A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 668 FQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSG 727
L + M KG P+ T+N+LI G+ + ++ D M GV D YN+LL+G
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 728 CCKEEKLEQALELFRDMLEKGLASTL-SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN 786
CK K E +E ++ M+EKG A L +FN L+E LC KL EA LL+ M + VNP+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 787 HDTYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYNRMGNRSEVFVVF 845
T+ TLI+ +CK +++ A LF +M++ + +T TY +++ + N + +F
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLF 625
Query: 846 EEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALK-LKDLIFDKRMPISAEAYKAIIKALCK 904
+EM+ + + PD +TY +M+D CK GNV K L +++ + +P S +I LC
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP-SLTTLGRVINCLCV 684
Query: 905 REEYSEALRLLNEMGESG 922
+ EA +++ M + G
Sbjct: 685 EDRVYEAAGIIHRMVQKG 702
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 220/755 (29%), Positives = 369/755 (48%)
Query: 173 EAVDLFLCDTGCE-FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSY 231
+A+D L + F PS+ +C ++ +K K+ + V M K F +Y
Sbjct: 115 DALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK---FRPAFSAY 171
Query: 232 TTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVE 291
TT+I A+ V +++ +F +M E G P V + +I G + G VD A+ L + M
Sbjct: 172 TTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS 231
Query: 292 KGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEE 351
L D Y I F ++ E+ GLK D V Y ++I K ++E
Sbjct: 232 SSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDE 291
Query: 352 AFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQ 411
A + + L + YNT++ G+ +GK ++A +L G P+ Y ++
Sbjct: 292 AVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT 351
Query: 412 GYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKP 471
+M K+ A ++ +EMKK + P++ TY ++ID LC G L + M GL P
Sbjct: 352 CLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFP 410
Query: 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEA-RIY 530
N +V K KL EA + E M + TPD F SLI GL K R+D+A ++Y
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVY 470
Query: 531 LVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590
+ML + N + + I + G + + + +M+N P+ + + +D K
Sbjct: 471 -EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529
Query: 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT 650
G + + F + AR +P+ ++YS+LI+GL K E +F + E+G V D
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589
Query: 651 YNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710
YN +I FCK V+KA+QL EEM KG EP +TY +IDG K L E + LF+E
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 649
Query: 711 KRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTL-SFNTLIEFLCISNKLQ 769
+ + L+ +Y++L+ G K ++++A + ++++KGL L ++N+L++ L + ++
Sbjct: 650 SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN 709
Query: 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLL 829
EA +M E + PN TY LIN CKV+ KA + EMQ++ +KP+TI+Y +++
Sbjct: 710 EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 769
Query: 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889
+G + GN +E +F+ G PD+ Y MI+ M+A L + + +P
Sbjct: 770 SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLP 829
Query: 890 ISAEAYKAIIKALCKREEYSEAL---RLLNEMGES 921
I + ++ L K + +A +L E G++
Sbjct: 830 IHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKA 864
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 195/614 (31%), Positives = 328/614 (53%)
Query: 191 FSCNALLRDLLKG-KKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKV-RNAEEGK 248
+S +++ ++K ++ L K + ++ A GF V SY V+DA + RN +
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAE 190
Query: 249 RVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGF 308
VF EM E PNV TYN++I G C G +D A+ L + M KG +P+ TY LI G+
Sbjct: 191 NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Query: 309 SAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDL 368
+++ D +L + KGL+ + ++Y +I+G ++G ++E V E+ G +D
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 369 VIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428
V YNTL+KG+CK G +A + E++R G+ P+ TYTSLI C+ M A E LD+
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 429 MKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNK 488
M+ + L P+ TY ++DG G + + +L EM G P+ + Y L++ + K
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 489 LQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRA 548
+++A ++E M+ +G++PDV +++++ G C++ +DEA EM+ +G+KP+ ++ +
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 549 FILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARG 608
I G+C + A + EML GL P++ YT++++ YC EG++ +A+ M+ +G
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 609 ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYN---------------S 653
+LP+V TYSVLINGL+K+ REA + L+L + VP TY+ S
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVS 610
Query: 654 LITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRG 713
LI FC + +A Q++E M K +P+ YN++I G C+AGD+ + + L+ EM K G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 714 VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK-GLASTLSFNTLIEFLCISNKLQEAH 772
L AL+ KE K+ + + +L L+ L+E +
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVL 730
Query: 773 QLLDAMLEEQVNPN 786
+L M ++ PN
Sbjct: 731 DVLAEMAKDGFLPN 744
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 221/839 (26%), Positives = 395/839 (47%)
Query: 6 RASSHVLNARTRPMPTRRF---SSQTQLTEQ-EATVRQITSILTQNDWQRLLTSSNVPKK 61
R++ +L P+ F SS+ L+ E + S+L +W++ + ++
Sbjct: 7 RSTRKILALGRHVFPSNAFFSVSSRPSLSSSDEVAAHDVASLLKTPNWEKNSSLKSLVSH 66
Query: 62 LNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASA 121
+NP+V VI L R+ N + FF W + C + + LL +++ + +Y A A
Sbjct: 67 MNPNVASQVISLQRSDN-DICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSS-GLYRVAHA 124
Query: 122 IVKRMISDGNNSGFEILSAVDGCFRESDE---FVCKGLVFNMLIDGYRKIGLLDEAVDLF 178
++ +I + + E+L + CF E E F ++ L+ K+ L A +
Sbjct: 125 VIVALIKECSRCEKEMLKLMY-CFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTY 183
Query: 179 LCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAY 238
FV + ++ L K E +K+ K+ GF D + T+++ +
Sbjct: 184 RRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKI---GFVLDSHIGTSLLLGF 240
Query: 239 FKVRNAEEGKRVFSEMG-EKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD 297
+ N + +VF M E C PN +Y+++I GLC VG ++EA LK+ M EKG P
Sbjct: 241 CRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS 300
Query: 298 SYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKD 357
+ TY LI + + E+I +G K + Y LIDG + G +EEA V
Sbjct: 301 TRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCR 360
Query: 358 ELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMR 417
++V ++ YN L+ G+CK G++ A E+L + + +PN RT+ L++G CR+
Sbjct: 361 KMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420
Query: 418 KMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYT 477
K A LL M L P + +Y V+IDGLC G + +L M ++P+ + +T
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFT 480
Query: 478 NLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRR 537
+++ + K+ K A + M R+GI+ D +LI G+CK + +A L +++
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKM 540
Query: 538 GLKPNIHSFRAFILGYCMAG-EMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596
+ HS IL G +++ ++ GLVP+ V YT++VDG + G+I
Sbjct: 541 RILTTPHSLNV-ILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599
Query: 597 AISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLIT 656
+ M G LP V Y+++INGL + + EA + + + G+ P+ TY ++
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Query: 657 SFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFC---KAGDLTEPFQLFDEMTKRG 713
+ +D+A + M E+G E N Y+ L+ GF K D +E + D +
Sbjct: 660 GYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRET 719
Query: 714 VP--LDG--SVYNAL---LSG-C-------CKEEKLEQALELFRDMLEKGLASTLSFNTL 758
P ++ SV L +SG C CKE + +++ +L +++LE+G+ + + +
Sbjct: 720 DPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERGVFLEKAMDII 779
Query: 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817
+E C K + +L+ +L+ P+ ++ +I K + E+A++L +E+ N
Sbjct: 780 MESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLTSN 838
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 218/803 (27%), Positives = 402/803 (50%)
Query: 65 DVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVK 124
+++ S++ R N L F+ + +Q + D K + +L + Y + +
Sbjct: 71 ELLNSILRRLRL-NPEACLEIFNLASKQQ-KFRPDYKAYCKMVHILSRARNYQQTKSYLC 128
Query: 125 RMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGC 184
+++ N+SGF + + F+E F VF+M++ Y + GL+ A+ +F
Sbjct: 129 ELVAL-NHSGFVVWGELVRVFKE---FSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNY 184
Query: 185 EFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNA 244
+PSL SCN+LL +L++ + + V+ +M DV++ + V++AY + N
Sbjct: 185 GRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSP---DVFTCSIVVNAYCRSGNV 241
Query: 245 EEGKRVFSEMGEK--GCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYV 302
++ VF++ E G NV TYN +I G +G V+ + M E+G+ + TY
Sbjct: 242 DKAM-VFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYT 300
Query: 303 NLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS 362
+LI G+ + + V L K L D Y L+DG+ + G + +A RV D ++
Sbjct: 301 SLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEI 360
Query: 363 GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSA 422
G + + I N+L+ G+CKSG++ +A ++ + + ++P+ TY +L+ GYCR + A
Sbjct: 361 GVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEA 420
Query: 423 FELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVST 482
+L D+M +K +VP+V TY +++ G G + ++ M+ RG+ + I + L+
Sbjct: 421 LKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEA 480
Query: 483 YFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYL--VEMLRRGLK 540
FK EA KL E + G+ D N +I GLCK ++++EA+ L V + R K
Sbjct: 481 LFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFR--CK 538
Query: 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDG---YCKEGNIAEA 597
P + +++A GY G ++ A M G+ P +Y +++ G Y +A+
Sbjct: 539 PAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADL 598
Query: 598 ISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITS 657
+ + R ARG+ P V TY LI G + +A E++EKG+ +V+ + + S
Sbjct: 599 VIELR---ARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANS 655
Query: 658 FCKICDVDKAFQLYEEMCEKGVE-PNTLTYNVLIDGF---C-KAGDLTEPFQLFDEMTKR 712
++ +D+A L +++ + + P + ++ C K + E + + K+
Sbjct: 656 LFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVE--NSTPKK 713
Query: 713 GVPLDGSVYNALLSGCCKEEKLEQALELFRDML--EKGLASTLSFNTLIEFLCISNKLQE 770
+ + VYN ++G CK KLE A +LF D+L ++ + ++ LI I+ + +
Sbjct: 714 LLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINK 773
Query: 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830
A L D M + + PN TY LI CK+ N+++A++L ++ Q+ + P ITY +L++
Sbjct: 774 AFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLID 833
Query: 831 GYNRMGNRSEVFVVFEEMLGKGI 853
G + GN +E + E+M+ KG+
Sbjct: 834 GLVKSGNVAEAMRLKEKMIEKGL 856
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 213/721 (29%), Positives = 361/721 (50%)
Query: 4 LTRASSHVLNARTRPMPTRRFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPK--- 60
LTR + N T P SS + + A+ S L + L +N +
Sbjct: 15 LTRFKP-LKNLTTSSSPVFEPSSSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHL 73
Query: 61 -KLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPA 119
+LNP + V++ R ++LT F ++ LS + +L A
Sbjct: 74 IRLNPLAVVEVLYRCR-NDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDA 132
Query: 120 SAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFL 179
+ + RMI S EI++++D F VF++LI Y + L EA + F
Sbjct: 133 QSCLLRMIRRSGVSRLEIVNSLDSTFSNCGS---NDSVFDLLIRTYVQARKLREAHEAFT 189
Query: 180 CDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYF 239
F S+ +CNAL+ L++ +EL W V+ ++++ G +VY+ +++A
Sbjct: 190 LLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVG---INVYTLNIMVNALC 246
Query: 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSY 299
K E+ S++ EKG P++ TYN +I G ++EA EL N+M KG P Y
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVY 306
Query: 300 TYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDEL 359
TY +I G + + V +E++ GL D+ Y +L+ K+GDV E +V ++
Sbjct: 307 TYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM 366
Query: 360 VASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419
+ DLV +++++ F +SG ++KA N + G+ P++ YT LIQGYCR + M
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR-KGM 425
Query: 420 VS-AFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTN 478
+S A L +EM ++ V TY I+ GLC L + + + EM R L P++ T
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485
Query: 479 LVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG 538
L+ + K LQ A +L ++M+ + I DV +N+L+ G K +D A+ +M+ +
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 539 LKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAI 598
+ P S+ + C G + A R ++EM++ + P +I S++ GYC+ GN ++
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 599 SKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK--GLVPDVDTYNSLIT 656
S M++ G +P+ +Y+ LI G ++ + +A G+ ++ E+ GLVPDV TYNS++
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665
Query: 657 SFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPL 716
FC+ + +A + +M E+GV P+ TY +I+GF +LTE F++ DEM +RG
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
Query: 717 D 717
D
Sbjct: 726 D 726
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| TAIR|locus:2034528 AT1G31840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 218/803 (27%), Positives = 397/803 (49%)
Query: 34 EATVRQITSILTQNDWQRLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQM 93
+A I+ + + ++ LL SS L + V+ L+ L +F W+E
Sbjct: 40 KALAAGISKAIKEGNFN-LLDSSVYGSNLQRNETNLVL-LSLESEPNSALKYFRWAEIS- 96
Query: 94 GTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVC 153
G D ++ V++ N M+ A + MI++ F +L ++ R D VC
Sbjct: 97 G---KDPSFYTIAHVLIRN-GMFDVADKVFDEMITN-RGKDFNVLGSIRD--RSLDADVC 149
Query: 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVW 213
K L++ + G++D+A+++F+ T V S +L L+ +++L +
Sbjct: 150 K-----FLMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDL---IA 201
Query: 214 AKMNKMNAGGFE-FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGG 272
+K+ GG E V ++ V+DA F + + E+G R + + N V+ G
Sbjct: 202 DHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKG 261
Query: 273 LCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLD 332
L V ++ A L + +++ G P+ T+ LI GF + + + +G++ D
Sbjct: 262 LS-VDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPD 320
Query: 333 TVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392
+AY LIDG+ K G + ++ + + G ++D+V++++ + + KSG + A V
Sbjct: 321 LIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYK 380
Query: 393 EIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCG 452
++ GI PN TYT LI+G C+ ++ AF + ++ K+ + PS+ TY +IDG C CG
Sbjct: 381 RMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCG 440
Query: 453 DLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFN 512
+LR A+ +MI G P+ +IY LV K+ + A + +M + I +V FN
Sbjct: 441 NLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFN 500
Query: 513 SLIIGLCKAKRMDEA-RIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLN 571
SLI G C+ R DEA +++ + M G+KP++ +F + M G ++ A F M
Sbjct: 501 SLIDGWCRLNRFDEALKVFRL-MGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFK 559
Query: 572 SGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE 631
GL P+ + Y +++D +CK + F M I ++ +V+I+ L K + +
Sbjct: 560 MGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIED 619
Query: 632 ALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLID 691
A F L+E + PD+ TYN++I +C + +D+A +++E + PNT+T +LI
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIH 679
Query: 692 GFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA- 750
CK D+ ++F M ++G + Y L+ K +E + +LF +M EKG++
Sbjct: 680 VLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 739
Query: 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLF 810
S +S++ +I+ LC ++ EA + ++ ++ P+ Y LI YCKV + +A L+
Sbjct: 740 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLY 799
Query: 811 LEMQQRNLKPATITYRSLLNGYN 833
M + +KP + R+L + YN
Sbjct: 800 EHMLRNGVKPDDLLQRAL-SEYN 821
|
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| TAIR|locus:2165585 AT5G57250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 212/739 (28%), Positives = 356/739 (48%)
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245
F SL C+ + R + KG+ M+ +V M N + FD + + VI + K+ E
Sbjct: 131 FPSSLTFCSLIYRFVEKGE-MDNAIEVLEMMTNKNVN-YPFDNFVCSAVISGFCKIGKPE 188
Query: 246 EGKRVFSEMGEKGCR-PNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNL 304
F + G PN+ TY ++ LC++G VDE +L + ++G D Y N
Sbjct: 189 LALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNW 248
Query: 305 IYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGN 364
I+G+ L D + E++ KG+ D V+Y LIDG K+G+VEEA + +++ G
Sbjct: 249 IHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGV 308
Query: 365 QIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFE 424
+ +L+ Y +++G CK GK+E+A + N I+ +GIE + Y +LI G CR + AF
Sbjct: 309 EPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFS 368
Query: 425 LLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYF 484
+L +M+++ + PS+ TY +I+GLC G + + + +++G+ + I Y+ L+ +Y
Sbjct: 369 MLGDMEQRGIQPSILTYNTVINGLCMAGRVSE-----ADEVSKGVVGDVITYSTLLDSYI 423
Query: 485 KKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIH 544
K + ++ R I D+ N L+ EA M L P+
Sbjct: 424 KVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTA 483
Query: 545 SFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCM 604
++ I GYC G+++ A FNE+ S V V Y I+D CK+G + A +
Sbjct: 484 TYATMIKGYCKTGQIEEALEMFNELRKSS-VSAAVCYNRIIDALCKKGMLDTATEVLIEL 542
Query: 605 LARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664
+G+ ++ T L++ + + LG+ L + + N I CK
Sbjct: 543 WEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSF 602
Query: 665 DKAFQLYEEMCEKGVE---PNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVY 721
+ A ++Y M KG+ P+T+ L+D ++ D E T +D Y
Sbjct: 603 EAAIEVYMIMRRKGLTVTFPSTIL-KTLVDNL-RSLDAYLLVVNAGETTLSS--MDVIDY 658
Query: 722 NALLSGCCKEEKLEQALELFRDMLEKGLA-STLSFNTLIEFLCISNKLQEAHQLLDAMLE 780
+++G CKE L +AL L +G+ +T+++N+LI LC L EA +L D++
Sbjct: 659 TIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLEN 718
Query: 781 EQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSE 840
+ P+ TY LI+ CK A++L M + L P I Y S+++GY ++G +
Sbjct: 719 IGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTED 778
Query: 841 VF-VVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899
VV +M+G+ + PD FT MI +CK+G++ EAL + DK + + +I
Sbjct: 779 AMRVVSRKMMGR-VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLI 837
Query: 900 KALCKREEYSEALRLLNEM 918
K C + EA LL EM
Sbjct: 838 KGFCTKGRMEEARGLLREM 856
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FIT7 | PP442_ARATH | No assigned EC number | 0.3728 | 0.9150 | 0.9291 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00029079001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (964 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 989 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-29 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-34
Identities = 99/421 (23%), Positives = 196/421 (46%), Gaps = 11/421 (2%)
Query: 313 RLGDVRLVLSELIGKG-LKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIY 371
R+ D +L ++ +G L +D + + KQ V+EAFR +L+ L +
Sbjct: 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFA-KLI---RNPTLSTF 440
Query: 372 NTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKK 431
N L+ S ++ A VL + G++ + + YT+LI + K+ + FE+ EM
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 432 KNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQE 491
+ +V T+G +IDG G + + G M ++ +KP+ +++ L+S + +
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560
Query: 492 AGKLVERMRREG--ITPDVSCFNSLIIGLCKAKRMDEAR-IYLVEMLRR-GLKPNIHSFR 547
A ++ M+ E I PD +L+ A ++D A+ +Y +M+ +K +
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY--QMIHEYNIKGTPEVYT 618
Query: 548 AFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR 607
+ G+ A +++M G+ P++V ++++VD G++ +A + +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 608 GILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKA 667
GI +YS L+ S ++AL ++ ++ L P V T N+LIT+ C+ + KA
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 668 FQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSG 727
++ EM G+ PNT+TY++L+ + D L + + G+ + + +
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
Query: 728 C 728
C
Sbjct: 799 C 799
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 7e-33
Identities = 151/646 (23%), Positives = 268/646 (41%), Gaps = 98/646 (15%)
Query: 249 RVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGF 308
VF +M E+ ++ ++NV++GG + G+ DEA+ L + M+ G+ PD YT+ ++
Sbjct: 142 YVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197
Query: 309 SAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDL 368
L R V + ++ G +LD ALI +VK GDV A V D + D
Sbjct: 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DC 253
Query: 369 VIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428
+ +N ++ G+ ++G+ + E+ + + ++P+ T TS+I SA ELL
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI----------SACELL-- 301
Query: 429 MKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNK 488
GD R + G ++ G + + +L+ Y
Sbjct: 302 -----------------------GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 489 LQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRA 548
EA K+ RM + D + ++I G K D+A M + + P+ + A
Sbjct: 339 WGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI-A 393
Query: 549 FILGYCMA-GEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR 607
+L C G++ + GL+ V+ ++++ Y K I +A+ F + +
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 608 GILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKI----CD 663
+V +++ +I GL EAL IF + L P+ T + +++ +I C
Sbjct: 454 ----DVISWTSIIAGLRLNNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508
Query: 664 VD-KAFQLYEEMCEKGVEPNTL-------------------------TYNVLIDGFCKAG 697
+ A L + G PN L ++N+L+ G+ G
Sbjct: 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568
Query: 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK-GLASTLS-F 755
+ +LF+ M + GV D + +LL C + + Q LE F M EK + L +
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ---YCKVQNMEKAKQLFLE 812
+++ L + KL EA+ ++ M + P+ + L+N + V+ E A Q E
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685
Query: 813 MQQRNLKPATITYRSLL-NGYNRMGNRSEVFVVFEEMLGKGIEPDN 857
+ P ++ Y LL N Y G EV V + M G+ D
Sbjct: 686 LD-----PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 2e-31
Identities = 113/507 (22%), Positives = 211/507 (41%), Gaps = 89/507 (17%)
Query: 371 YNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVS-AFELLDEM 429
YN LL+ G+++ ++L ++ + G+ + Y + C+ ++ V AF +
Sbjct: 377 YNRLLR----DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 430 KKKNLVPSVFTYGVIIDGLCHCGDL---RQINAILGEMITRGLKPNAIIYTNLVSTYFKK 486
P++ T+ +++ D+ ++ ++ E GLK + +YT L+ST K
Sbjct: 433 ----RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---AGLKADCKLYTTLISTCAK- 484
Query: 487 NKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSF 546
+GK V+ M F+ EM+ G++ N+H+F
Sbjct: 485 -----SGK-VDAM--------FEVFH--------------------EMVNAGVEANVHTF 510
Query: 547 RAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLA 606
A I G AG++ A + M + + P+ V++ +++ + G + A M A
Sbjct: 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 607 RG--ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664
I P+ T L+ + ++ A ++ + E + + Y + S + D
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724
D A +Y++M +KGV+P+ + ++ L+D AGDL + F++ + K+G+ L Y++L
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 725 LSGCCKEEKLEQALELFRDMLEKGLASTLS-FNTLIEFLCISNKLQEAHQLLDAMLEEQV 783
+ C + ++ALEL+ D+ L T+S N LI LC N+L +A ++L
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS------- 743
Query: 784 NPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843
EM++ L P TITY LL R +
Sbjct: 744 ----------------------------EMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 844 VFEEMLGKGIEPDNFTYYVMIDAHCKE 870
+ + GI+P N I C
Sbjct: 776 LLSQAKEDGIKP-NLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-30
Identities = 143/580 (24%), Positives = 258/580 (44%), Gaps = 76/580 (13%)
Query: 158 FNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLR------DLLKGKKMELFWK 211
+N+L+ GY K G DEA+ L+ P +++ +LR DL +G+ +
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR------E 208
Query: 212 VWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIG 271
V A + + GFE DV +I Y K + + VF M + C ++N +I
Sbjct: 209 VHAHVVRF---GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMIS 261
Query: 272 GLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKL 331
G G E +EL +M E + PD T ++I SA + LGD RL G+
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVI---SACELLGDERL------GRE--- 309
Query: 332 DTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391
+ G+V V +G +D+ + N+L++ + G +A +V
Sbjct: 310 --------MHGYV---------------VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 392 NEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHC 451
+ RM + ++ ++T++I GY + A E M++ N+ P T ++
Sbjct: 347 S---RMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 452 GDLRQINAILGEM-ITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSC 510
GDL + L E+ +GL ++ L+ Y K + +A ++ + + DV
Sbjct: 403 GDL-DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVIS 457
Query: 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMA-GEMQTAGRFFNEM 569
+ S+I GL R EA I+ +ML LKPN + A L C G + +
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA-ALSACARIGALMCGKEIHAHV 515
Query: 570 LNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL 629
L +G+ + + +++D Y + G + A ++F + +V ++++L+ G +
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEK----DVVSWNILLTGYVAHGKG 570
Query: 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK-GVEPNTLTYNV 688
A+ +F ++E G+ PD T+ SL+ + + V + + + M EK + PN Y
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630
Query: 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGC 728
++D +AG LTE + ++M + D +V+ ALL+ C
Sbjct: 631 VVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 3e-29
Identities = 115/506 (22%), Positives = 208/506 (41%), Gaps = 81/506 (16%)
Query: 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRL- 319
P ++T+N+++ +D A+ + + E GL D Y LI S + G V
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI---STCAKSGKVDAM 491
Query: 320 --VLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKG 377
V E++ G++ + + ALIDG + G V +AF + + + D V++N L+
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 378 FCKSGKMEKAREVLNEIIRMG-----IEPNSRTYTSLIQGYCR-------------MRK- 418
+SG +++A +VL E M I+P+ T +L++ + +
Sbjct: 552 CGQSGAVDRAFDVLAE---MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 419 -----------MVSA--------FELL--DEMKKKNLVPSVFTYGVIIDGLCHCGDLRQI 457
V++ F L D+MKKK + P + ++D H GDL +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 458 NAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIG 517
IL + +G+K + Y++L+ ++A +L E ++ + P VS N+LI
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 518 LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN 577
LC+ ++ +A L EM R GL PN ++ ++ + ++ G+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 578 DVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE-----A 632
V+ I G C +F A L E V + S + ++ A
Sbjct: 789 LVMCRCIT-GLCLR--------RFEKACA---LGEP---VVSFD--SGRPQIENKWTSWA 831
Query: 633 LGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEM---CEKGVEPNTLTYNVL 689
L ++ E + G +P ++ + ++ D +L E + + + N T L
Sbjct: 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST---L 888
Query: 690 IDGFCKAGDL-TEPFQLFDEMTKRGV 714
+DGF G+ F L +E GV
Sbjct: 889 VDGF---GEYDPRAFSLLEEAASLGV 911
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 5e-29
Identities = 98/430 (22%), Positives = 186/430 (43%), Gaps = 55/430 (12%)
Query: 568 EMLNSGLVPNDVIYTSIVDGYCK-EGNIAEAISKFR-CMLARGILPEVQTYSVLINGLSK 625
+M GL+ D IY + CK + + EA FR L R P + T+++L++ +
Sbjct: 395 DMEKRGLLDMDKIYHAKFFKACKKQRAVKEA---FRFAKLIRN--PTLSTFNMLMSVCAS 449
Query: 626 KLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLT 685
++ AL + + E GL D Y +LI++ K VD F+++ EM GVE N T
Sbjct: 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 686 YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDML 745
+ LIDG +AG + + F + M + V D V+NAL+S C + +++A ++ +M
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 746 EKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805
E H ++P+H T L+ +++
Sbjct: 570 -----------------------AETHP---------IDPDHITVGALMKACANAGQVDR 597
Query: 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865
AK+++ + + N+K Y +N ++ G+ ++++M KG++PD + ++D
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 866 AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR- 924
G++ +A ++ + + + +Y +++ A + + +AL L ++ R
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 925 -------LGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVD 977
L A C N + A +VL M G N+I+ + ++ D
Sbjct: 718 TVSTMNALITALCE--GNQLPK------ALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 978 LDESKDLMKQ 987
D DL+ Q
Sbjct: 770 ADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 9e-29
Identities = 146/649 (22%), Positives = 263/649 (40%), Gaps = 63/649 (9%)
Query: 272 GLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI------YGFSAAKRLGDVRLVLSELI 325
LC G +++A++L SM E + D YV L R+ LS
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSR--ALSSHP 117
Query: 326 GKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385
G++L A++ FV+ G++ A+ V + DL +N L+ G+ K+G +
Sbjct: 118 SLGVRLGN----AMLSMFVRFGELVHAWYV----FGKMPERDLFSWNVLVGGYAKAGYFD 169
Query: 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVII 445
+A + + ++ G+ P+ T+ +++ + + E+ + + V +I
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 446 DGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGIT 505
CGD+ + M R + I + ++S YF+ + E +L MR +
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 506 PDVSCFNSLII--GLCKAKRM-DEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTA 562
PD+ S+I L +R+ E Y+V + G ++ + I Y G A
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILP-EVQTYSVL-- 619
+ F+ M V +T+++ GY K G +A+ + M + P E+ SVL
Sbjct: 343 EKVFSRMETKDAVS----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 620 ---INGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCE 676
+ L ++L E L KGL+ V N+LI + K +DKA +++ + E
Sbjct: 399 CACLGDLDVGVKLHE-LAE-----RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 677 KGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQ 736
K + +++ +I G E F +M P + A LS C + L
Sbjct: 453 K----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMC 507
Query: 737 ALELFRDMLEKGLASTLSF--NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLI 794
E+ +L G+ F N L++ ++ A ++ ++ V+ N L+
Sbjct: 508 GKEIHAHVLRTGIGFD-GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-----ILL 561
Query: 795 NQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GI 853
Y A +LF M + + P +T+ SLL +R G ++ F M K I
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
Query: 854 EPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902
P+ Y ++D + G + EA F +MPI+ + A+ AL
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYN-----FINKMPITPDP--AVWGAL 663
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 129/552 (23%), Positives = 222/552 (40%), Gaps = 105/552 (19%)
Query: 172 DEAVDLF-LCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYS 230
EA++LF + + GC F + +AL+ + K + V+ + + GFE D Y
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY---WHVESSGFEPDQYM 160
Query: 231 YTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290
V+ + K + +R+F EM E+ N+A++ +IGGL G EA L M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 291 EKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKL----DTVAYYALIDGFVKQ 346
E G + T+V ++ A+ LG R +L LK DT ALID + K
Sbjct: 217 EDGSDAEPRTFVVML---RASAGLGSAR-AGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 347 GDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTY 406
GD+E+A V D + + V +N++L G+ G E+A + E+ G+ + T+
Sbjct: 273 GDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 407 TSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMIT 466
+ +I+ + R+ + E K+ H G +I
Sbjct: 329 SIMIRIFSRLALL--------EHAKQ----------------AHAG-----------LIR 353
Query: 467 RGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDE 526
G + + T LV Y K RM++
Sbjct: 354 TGFPLDIVANTALVDLY-----------------------------------SKWGRMED 378
Query: 527 ARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVD 586
AR + + + R N+ S+ A I GY G A F M+ G+ PN V + +++
Sbjct: 379 AR-NVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
Query: 587 GYCKEGNIAEAISKFRCMLA-RGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLV 645
G + F+ M I P Y+ +I L ++ L EA + +
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFK 491
Query: 646 PDVDTYNSLITSFCKICDVDKAFQLYEEMCEK--GVEPNTL-TYNVLIDGFCKAGDLTEP 702
P V+ + +L+T+ C + K +L EK G+ P L Y VL++ + +G E
Sbjct: 492 PTVNMWAALLTA----CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547
Query: 703 FQLFDEMTKRGV 714
++ + + ++G+
Sbjct: 548 AKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 94/426 (22%), Positives = 181/426 (42%), Gaps = 25/426 (5%)
Query: 498 RMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG--LKPNIHSFRAFILGYCM 555
R+ I S I L R EA L E+L G ++ A +
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREAL-ELFEILEAGCPFTLPASTYDALVEACIA 135
Query: 556 AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQT 615
++ + + +SG P+ + ++ + K G + +A F M R + +
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----S 191
Query: 616 YSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMC 675
+ +I GL REA +F E+ E G + T+ ++ + + QL+ +
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 676 EKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLE 735
+ GV +T LID + K GD+ + +FD M ++ +N++L+G E
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSE 307
Query: 736 QALELFRDMLEKGLA-STLSFNTLIEFLCISNKLQEAHQ----LLDAMLEEQVNPNHDTY 790
+AL L+ +M + G++ +F+ +I L+ A Q L+ + N
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN---- 363
Query: 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850
T L++ Y K ME A+ +F M ++NL I++ +L+ GY G ++ +FE M+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 851 KGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIF-DKRMPISAEAYKAIIKALCKREEYS 909
+G+ P++ T+ ++ A G + ++ + + R+ A Y +I+ L +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 910 EALRLL 915
EA ++
Sbjct: 480 EAYAMI 485
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 3e-25
Identities = 97/491 (19%), Positives = 194/491 (39%), Gaps = 29/491 (5%)
Query: 294 LVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAF 353
P T+ L+ ++++ + VL + GLK D Y LI K G V+ F
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 354 RVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGY 413
V E+V +G + ++ + L+ G ++G++ KA + ++P+ + +LI
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 414 CRMRKMVSAFELLDEMK--KKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKP 471
+ + AF++L EMK + P T G ++ + G + + + + +K
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYL 531
+YT V++ +K A + + M+++G+ PD F++L+ A +D+A L
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 532 VEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKE 591
+ ++G+K S+ + + A + A + ++ + L P +++ C+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 592 GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTY 651
+ +A+ M G+ P TYS+L+ +K + L + + E G+ P++
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
Query: 652 NSLITSFC-----KICD-------------------VDKAFQLYEEMCEKGVEPNTLTYN 687
IT C K C A +Y E G P +
Sbjct: 793 RC-ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLS 851
Query: 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK 747
++ D T +L + + S + L+ G E +A L +
Sbjct: 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASL 909
Query: 748 GLASTLSFNTL 758
G+ ++SF
Sbjct: 910 GVVPSVSFKKS 920
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-23
Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 24/374 (6%)
Query: 158 FNML---------IDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMEL 208
FNML IDG ++ L + L C+ +L S A K K++
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGL---KADCKLYTTLISTCA------KSGKVDA 490
Query: 209 FWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNV 268
++V+ ++M G E +V+++ +ID + + + M K +P+ +N
Sbjct: 491 MFEVF---HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 269 VIGGLCRVGFVDEAVELKNSMV--EKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIG 326
+I + G VD A ++ M + PD T L+ + A ++ + V +
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 327 KGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEK 386
+K Y ++ ++GD + A + D++ G + D V ++ L+ +G ++K
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 387 AREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIID 446
A E+L + + GI+ + +Y+SL+ + A EL +++K L P+V T +I
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 447 GLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITP 506
LC L + +L EM GL PN I Y+ L+ +K+ L+ + + +GI P
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 507 DVSCFNSLIIGLCK 520
++ I GLC
Sbjct: 788 NLVMCRC-ITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 5e-21
Identities = 128/622 (20%), Positives = 238/622 (38%), Gaps = 100/622 (16%)
Query: 372 NTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKK 431
N+ L+ C G++E+A ++L + + + + Y +L + C ++ V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEE----GSRVC 109
Query: 432 KNLVPSVFTYGV-----IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKK 486
+ S + GV ++ G+L + G+M R + + LV Y K
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKA 165
Query: 487 NKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSF 546
EA L RM G+ PDV F ++ + R ++R G + ++
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 547 RAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCML 605
A I Y G++ +A F+ M D I + +++ GY + G E + F M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 606 ARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSF------- 658
+ P++ T + +I+ + R + +++ G DV NSLI +
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 659 ----------CKICDV----------------DKAFQLYEEMCEKGVEPNTLTYNVLIDG 692
K D DKA + Y M + V P+ +T ++
Sbjct: 341 EAEKVFSRMETK--DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST 752
GDL +L + ++G+ V NAL+ K + +++ALE+F ++ EK
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DV 455
Query: 753 LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTT-------------------- 792
+S+ ++I L ++N+ EA ML + PN T
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 793 ---------------LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN 837
L++ Y + M A F ++++ I LL GY G
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNI----LLTGYVAHGK 569
Query: 838 RSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEAYK 896
S +F M+ G+ PD T+ ++ A + G V + L+ + +K + + + Y
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 897 AIIKALCKREEYSEALRLLNEM 918
++ L + + +EA +N+M
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 1e-19
Identities = 93/431 (21%), Positives = 175/431 (40%), Gaps = 53/431 (12%)
Query: 415 RMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAI 474
R R+ + FE+L E +P TY +++ +R + A+ + + G +P+
Sbjct: 102 RHREALELFEIL-EAGCPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 475 IYTNLVSTYFKKNKLQEAGKLVERM-RREGITPDVSCFNSLIIGLCKAKRMDEARIYLVE 533
+ ++ + K L +A +L + M R + + ++I GL A EA E
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLAS-----WGTIIGGLVDAGNYREAFALFRE 214
Query: 534 MLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN 593
M G +F + G + + +L +G+V + + +++D Y K G+
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 594 IAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNS 653
I +A F M PE T + +NS
Sbjct: 275 IEDARCVFDGM------PEKTTVA---------------------------------WNS 295
Query: 654 LITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRG 713
++ + ++A LY EM + GV + T++++I F + L Q + + G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 714 VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773
PLD AL+ K ++E A +F M K L +S+N LI + +A +
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL---ISWNALIAGYGNHGRGTKAVE 412
Query: 774 LLDAMLEEQVNPNHDTYTTLINQYCKVQNM-EKAKQLFLEMQQ-RNLKPATITYRSLLNG 831
+ + M+ E V PNH T+ +++ C+ + E+ ++F M + +KP + Y ++
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 832 YNRMGNRSEVF 842
R G E +
Sbjct: 472 LGREGLLDEAY 482
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 1e-19
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 646 PDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK 695
PDV TYN+LI +CK V++A +L+ EM ++G++PN TY++LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 8e-19
Identities = 103/472 (21%), Positives = 185/472 (39%), Gaps = 59/472 (12%)
Query: 387 AREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIID 446
+ V + G EP+ ++ + + ++ A L DEM ++NL ++G II
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIG 197
Query: 447 GLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITP 506
GL G+ R EA L M +G
Sbjct: 198 GLVDAGNYR-----------------------------------EAFALFREMWEDGSDA 222
Query: 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFF 566
+ F ++ + +L+ G+ + A I Y G+++ A F
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 567 NEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKK 626
+ M V + S++ GY G EA+ + M G+ + T+S++I S+
Sbjct: 283 DGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 627 LELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTY 686
L A L+ G D+ +L+ + K ++ A +++ M K N +++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISW 394
Query: 687 NVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLE 746
N LI G+ G T+ ++F+ M GV + + A+LS C EQ E+F+ M E
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 747 --KGLASTLSFNTLIEFLCISNKLQEAHQLL-DAMLEEQVNPNHDTYTTLINQYCKVQ-N 802
+ + + +IE L L EA+ ++ A + VN + L+ C++ N
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN----MWAALLTA-CRIHKN 509
Query: 803 MEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGI 853
+E + + + P + Y LLN YN G ++E V E + KG+
Sbjct: 510 LELGR--LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-17
Identities = 88/430 (20%), Positives = 182/430 (42%), Gaps = 26/430 (6%)
Query: 325 IGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKM 384
G L Y AL++ + + V + +SG + D + N +L K G +
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174
Query: 385 EKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVI 444
AR + +E+ E N ++ ++I G AF L EM + T+ V+
Sbjct: 175 IDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230
Query: 445 IDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGI 504
+ G R + ++ G+ + + L+ Y K +++A + + M +
Sbjct: 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-- 288
Query: 505 TPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGR 564
+NS++ G +EA EM G+ + +F I + ++ A +
Sbjct: 289 --TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 565 FFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLS 624
++ +G + V T++VD Y K G + +A + F M + ++ +++ LI G
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYG 402
Query: 625 KKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICD-VDKAFQLYEEMCE-KGVEPN 682
+A+ +F ++ +G+ P+ T+ +++ S C+ ++ +++++ M E ++P
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVL-SACRYSGLSEQGWEIFQSMSENHRIKPR 461
Query: 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSV--YNALLSGCCKEEKLEQALEL 740
+ Y +I+ + G L E + + R P +V + ALL+ C ++ + LEL
Sbjct: 462 AMHYACMIELLGREGLLDEAYAMI-----RRAPFKPTVNMWAALLTAC----RIHKNLEL 512
Query: 741 FRDMLEKGLA 750
R EK
Sbjct: 513 GRLAAEKLYG 522
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-17
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 367 DLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415
D+V YNTL+ G+CK GK+E+A ++ NE+ + GI+PN TY+ LI G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-17
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 401 PNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCH 450
P+ TY +LI GYC+ K+ A +L +EMKK+ + P+V+TY ++IDGLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-15
Identities = 104/427 (24%), Positives = 179/427 (41%), Gaps = 71/427 (16%)
Query: 131 NNSGFEILSAVDGCFRESDEFV----CKGLV-FNMLIDGYRKIGLLDEAVDLFLCDTGCE 185
NS ++ ++ G + E+++ K V + +I GY K GL D+A++ +
Sbjct: 326 CNSLIQMYLSL-GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 186 FVP------SLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYF 239
P S+ S A L DL G K+ G V +I+ Y
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHEL---------AERKGLISYVVVANALIEMYS 435
Query: 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSY 299
K + ++ VF + EK +V ++ +I GL EA+ M+ L P+S
Sbjct: 436 KCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS- 489
Query: 300 TYVNLIYGFSAAKRLGDVRL---VLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356
V LI SA R+G + + + ++ G+ D AL+D +V+ G + A+
Sbjct: 490 --VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ- 546
Query: 357 DELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRM 416
+ ++ D+V +N LL G+ GK A E+ N ++ G+ P+ T+ SL+ C
Sbjct: 547 ----FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSR 601
Query: 417 RKMVS-AFELLDEMKKK-NLVPSVFTYGVIIDGLCHCGDLRQ------------------ 456
MV+ E M++K ++ P++ Y ++D L G L +
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 457 --INAI-------LGEMITR---GLKPNAIIYTNLV-STYFKKNKLQEAGKLVERMRREG 503
+NA LGE+ + L PN++ Y L+ + Y K E ++ + MR G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 504 ITPDVSC 510
+T D C
Sbjct: 722 LTVDPGC 728
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 4e-15
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 681 PNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK 730
P+ +TYN LIDG+CK G + E +LF+EM KRG+ + Y+ L+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-15
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 227 DVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCR 275
DV +Y T+ID Y K EE ++F+EM ++G +PNV TY+++I GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-14
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGF 308
P+V TYN +I G C+ G V+EA++L N M ++G+ P+ YTY LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 5e-12
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 576 PNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSK 625
P+ V Y +++DGYCK+G + EA+ F M RGI P V TYS+LI+GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 9e-12
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGY 832
P+ TY TLI+ YCK +E+A +LF EM++R +KP TY L++G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 1e-11
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 820 PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK 869
P +TY +L++GY + G E +F EM +GI+P+ +TY ++ID CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 1e-11
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 506 PDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYC 554
PDV +N+LI G CK +++EA EM +RG+KPN++++ I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-11
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 332 DTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCK 380
D V Y LIDG+ K+G VEEA ++ +E+ G + ++ Y+ L+ G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-11
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 611 PEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660
P+V TY+ LI+G KK ++ EAL +F E+ ++G+ P+V TY+ LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCK 520
P+ + Y L+ Y KK K++EA KL M++ GI P+V ++ LI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-11
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 677 KGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM 709
KG++P+ +TYN LIDG C+AG + E +L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 2e-10
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590
P++ ++ I GYC G+++ A + FNEM G+ PN Y+ ++DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCK 799
+++NTLI+ C K++EA +L + M + + PN TY+ LI+ CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 3e-09
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 257 KGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290
KG +P+V TYN +I GLCR G VDEAVEL + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-09
Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 47/308 (15%)
Query: 161 LIDGYRKIGLLDEAVDLFLCDTGCEFVP--------SLFSCNALLRDLL-----KGKKME 207
LID Y K G +++A +F V +L + L G ++
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 208 LF-----WKVWAKMNKM------NAG----GFEFDVYSYTTVIDAYFKVRNAEEGKRVFS 252
F ++++++ + +AG GF D+ + T ++D Y K E+ + VF
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 253 EMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312
M K N+ ++N +I G G +AVE+ M+ +G+ P+ T++ ++ SA +
Sbjct: 385 RMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL---SACR 437
Query: 313 RLGDV----RLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRV--KDELVASGNQI 366
G + S +K + Y +I+ ++G ++EA+ + + + N
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-- 495
Query: 367 DLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELL 426
++ LL +E R ++ MG E + Y L+ Y + A +++
Sbjct: 496 ---MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN-NYVVLLNLYNSSGRQAEAAKVV 551
Query: 427 DEMKKKNL 434
+ +K+K L
Sbjct: 552 ETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 642 KGLVPDVDTYNSLITSFCKICDVDKAFQLYEEM 674
KGL PDV TYN+LI C+ VD+A +L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 397 MGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMK 430
G++P+ TY +LI G CR ++ A ELLDEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 4e-08
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 436 PSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485
P V TY +IDG C G + + + EM RG+KPN Y+ L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 6e-08
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 650 TYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNT 683
TYN+LI CK V++A +L++EM E+G+EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 8e-08
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 369 VIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNS 403
V YNTL+ G CK+G++E+A E+ E+ GIEP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 572 SGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCM 604
GL P+ V Y +++DG C+ G + EA+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 648 VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEP 681
++TYN+L+ + K D D A + EEM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 8e-07
Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 52/296 (17%)
Query: 723 ALLSGCCKEEKL------EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE---AHQ 773
+ +S C + EKL +ALELF +LE G TL +T + L+
Sbjct: 86 SGVSLCSQIEKLVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144
Query: 774 LLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN 833
+ + P+ ++ + K + A++LF EM +RNL ++ +++ G
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLV 200
Query: 834 RMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA-------------HC---KEG---NVM 874
GN E F +F EM G + + T+ VM+ A HC K G +
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 875 EALKLKDL------------IFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922
+ L D+ +FD + A+ +++ EAL L EM +SG
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 923 FRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDL 978
+ + + F R ++++A + A G + L DIV + VDL
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQ-----AHAGLIRTGFPL-DIV-ANTALVDL 369
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 362 SGNQIDLVIYNTLLKGFCKSGKMEKAREVLNE 393
G + D+V YNTL+ G C++G++++A E+L+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 685 TYNVLIDGFCKAGDLTEPFQLFDEMTKRGV 714
TYN LI G+CKAG L E +LF EM ++GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 5/193 (2%)
Query: 733 KLEQALELFRDMLEKGLAST--LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DT 789
+L +ALEL + LE S L L +L+EA +LL+ LE ++ PN +
Sbjct: 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA 97
Query: 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEML 849
L + E+A +L + + P L +G+ E ++E+ L
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 850 GKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907
E + + G EAL+L + AEA + K +
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 908 YSEALRLLNEMGE 920
Y EAL + E
Sbjct: 218 YEEALEYYEKALE 230
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 404 RTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSV 438
TY +LI G C+ ++ A EL EMK++ + P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDS 298
TYN +I GLC+ G V+EA+EL M E+G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 369 VIYNTLLKGFCKSGKMEKAREVLNEIIRMGI 399
V YN+L+ G+CK+GK+E+A E+ E+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 855 PDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904
PD TY +ID +CK+G V EALKL + + + + + Y +I LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 405 TYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434
TY SLI GYC+ K+ A EL EMK+K +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 9e-06
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 851 KGIEPDNFTYYVMIDAHCKEGNVMEALKL 879
KG++PD TY +ID C+ G V EA++L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 503 GITPDVSCFNSLIIGLCKAKRMDEARIYLVEM 534
G+ PDV +N+LI GLC+A R+DEA L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNV 263
+Y T+ID K EE +F EM E+G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGL 749
YN+L+SG CK KLE+ALELF++M EKG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820
TY TLI+ CK +E+A +LF EM++R ++P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 685 TYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD 717
TYN LIDG CKAG + E +LF EM +RG+ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 650 TYNSLITSFCKICDVDKAFQLYEEMCEKGV 679
TYNSLI+ +CK +++A +L++EM EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 720 VYNALLSGCCKEEKLEQALELFRDMLEKGL 749
YN L+ G CK ++E+ALELF++M E+G+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 8e-05
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 712 RGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744
+G+ D YN L+ G C+ ++++A+EL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 783 VNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQ 814
+ P+ TY TLI+ C+ +++A +L EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820
+TY L+ K + + A + EM+ LKP
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGL 294
TYN +I G C+ G ++EA+EL M EKG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 1e-04
Identities = 59/280 (21%), Positives = 98/280 (35%), Gaps = 6/280 (2%)
Query: 522 KRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS-GLVPNDVI 580
K + A L+E L + L + A + + GE+ A E L +
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 581 YTSIVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKLELREALGIFLEL 639
+ K G + EA+ L +LP + L L + EAL + +
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 640 LEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTL--TYNVLIDGFCKAG 697
L PD+ + + ++ D ++A +LYE+ E E N L L G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757
E +L ++ K D L K K E+ALE + LE + +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY 797
L L + +EA + L+ LE +P+ +
Sbjct: 242 LALLLLELGRYEEALEALEKALEL--DPDLYNLGLALLLL 279
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD 856
+TY +L++G + G E +F+EM +GIEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 404 RTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVP 436
TY +L+ + A +L+EMK L P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818
TY +LI+ YCK +E+A +LF EM+++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 327 KGLKLDTVAYYALIDGFVKQGDVEEAFRVKDE 358
KGLK D V Y LIDG + G V+EA + DE
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNI 543
+N+LI GLCKA R++EA EM RG++P++
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 685 TYNVLIDGFCKAGDLTEPFQLFDEMTKRGV 714
TYN L+ KAGD + +EM G+
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (100), Expect = 4e-04
Identities = 48/263 (18%), Positives = 87/263 (33%), Gaps = 5/263 (1%)
Query: 383 KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN-LVPSVFTY 441
+ A +L E + + + + + ++ A ELL+E +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 442 GVIIDGLCHCGDLRQINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMR 500
++ L G L + +L + + L PN A NL K +EA +L+E+
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 501 REGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG--YCMAGE 558
PD++ + L + +EA + L + N + LG G
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 559 MQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSV 618
+ A + L + ++ Y K G EA+ + L +
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEALYN 241
Query: 619 LINGLSKKLELREALGIFLELLE 641
L L + EAL + LE
Sbjct: 242 LALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 579 VIYTSIVDGYCKEGNIAEAISKFRCMLARGI 609
V Y S++ GYCK G + EA+ F+ M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 39/146 (26%)
Query: 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLI--------------- 794
+ST N+ + LC +L++A +LL++M E +V + D Y L
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRV 108
Query: 795 --------------------NQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834
+ + + + A +F +M +R+L ++ L+ GY +
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAK 164
Query: 835 MGNRSEVFVVFEEMLGKGIEPDNFTY 860
G E ++ ML G+ PD +T+
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 467 RGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR 500
+GLKP+ + Y L+ + ++ EA +L++ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 432 KNLVPSVFTYGVIIDGLCHCGDLRQINAILGEM 464
K L P V TY +IDGLC G + + +L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGC 259
+Y ++I Y K EE +F EM EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 509 SCFNSLIIGLCKAKRMDEARIYLVEMLRRGL 539
+NSLI G CKA +++EA EM +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 894 AYKAIIKALCKREEYSEALRLLNEMGESGFR 924
Y +I CK+ + EAL+L NEM + G +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 615 TYSVLINGLSKKLELREALGIFLELLEKGLVPDV 648
TY+ LI+GL K + EAL +F E+ E+G+ PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 334 VAYYALIDGFVKQGDVEEAFRVKDELVASGNQID 367
V Y LIDG K G VEEA + E+ G + D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 368 LVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEP 401
L YN LL K+G + A VL E+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 439 FTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNA 473
TY +IDGLC G + + + EM RG++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 438 VFTYGVIIDGLCHCGDLRQINAILGEMITRGLKP 471
+ TY ++ L GD A+L EM GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 989 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.8 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.71 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.16 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.11 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.0 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.93 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.84 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.81 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.73 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.48 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.1 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.87 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.58 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.55 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.44 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.38 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.35 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.33 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.24 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.75 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.41 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.97 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.59 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.52 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.34 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.24 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.21 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.12 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.98 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.66 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 93.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.25 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.63 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 92.43 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.22 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.13 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.07 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 91.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.8 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.39 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.02 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 90.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.71 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.32 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.82 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.64 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 87.57 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.34 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.1 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.81 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.59 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.44 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.38 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.76 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.48 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.94 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.93 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.56 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.48 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.36 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.17 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.09 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.56 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.16 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.69 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.63 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.59 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.84 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.71 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.41 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-83 Score=771.49 Aligned_cols=681 Identities=19% Similarity=0.281 Sum_probs=641.5
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 260 RPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
.|+..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++..|.+.+.++.|.+++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
+.+|++.|+++.|.++|++|. +||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999995 4799999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
..+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.++||+++.+|++.|+.++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 500 RREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDV 579 (989)
Q Consensus 500 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (989)
...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 57899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 001966 580 IYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 659 (989)
+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. +++||..+|+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999964 5889999999999999999999999999986 489999999999999999999999999
Q ss_pred HHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 740 LFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 740 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
++..+.+.+. ++..+++.|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.++|+++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999998 89999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEML-GKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..+++++++.|++++|.+++++|. .+|+..+|..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 58999999999999999999999999999999983 6789999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLA 966 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 966 (989)
|+.+|...|+.+.|....+++.+..|+ ++..|..|+++|...|+|++|.++.+.|++.|+.+++ .+|+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999988 8999999999999999999999999999999999874 3443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-83 Score=772.53 Aligned_cols=673 Identities=20% Similarity=0.275 Sum_probs=475.5
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCcCHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGG-FEFDVYSYT 232 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 232 (989)
++..++.++.+|++.|.+++|..+|+.|.+.|+.|+..+|..++..+.+.+.++.+..++..+.+ . ..+++.++|
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~n 125 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS----SHPSLGVRLGN 125 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH----cCCCCCchHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888877 4 567788888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
.++.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 888888888888888888888864 6888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
++..+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||+++||++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888887774 3577777777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 393 EIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN 472 (989)
Q Consensus 393 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (989)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777664 245
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666665555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|+.+|++|..
T Consensus 434 y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-------------------------- 483 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-------------------------- 483 (857)
T ss_pred HHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------
Confidence 555555555555555554 23444455555555555555555555554443
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 001966 633 LGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKR 712 (989)
Q Consensus 633 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 712 (989)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+
T Consensus 484 ----------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 484 ----------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred ----------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 2445555555555555555555555555555555555555555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHH
Q 001966 713 GVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML-EEQVNPNHDTY 790 (989)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 790 (989)
.+|..+|++++.+|++.|+.++|+++|++|.+.+. |+..+|..++.+|++.|++++|.++|++|. +.|+.|+..+|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 34555555555555555555555555555555555 555555555556666666666666666666 56778888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
+.++++|++.|++++|.+++++|. ++||..+|.+|+.+|...|+.+.+....+++++ +.|++. .|..|.+.|..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHH
Confidence 888888888888888888888874 678888888888888888888888888888887 777666 45555678888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
.|+|++|.++.+.|.+.|+.+++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888887776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=642.88 Aligned_cols=545 Identities=20% Similarity=0.284 Sum_probs=399.7
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFV-PSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYT 232 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 232 (989)
+...|..++..|++.|++++|+++|+.|...|+. ++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Tyn 441 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTFN 441 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHHH
Confidence 3345666677777777777777777777777653 4566667777777777777777777776644 7777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.+||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVA--SGNQIDLVIYNTLLKGFCKSGKMEKAREV 390 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (989)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777765 46777777777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 391 LNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470 (989)
Q Consensus 391 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (989)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001966 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFI 550 (989)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 550 (989)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 551 LGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELR 630 (989)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 630 (989)
.+|++.|++++|.++|++|.+.|+.||..+|++++..+. +++++|.++.+.+..- +. .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHH
Confidence 777777777777777777777777777777777775433 2345554443333221 00 00011112234
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710 (989)
Q Consensus 631 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 710 (989)
+|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 577777777777777777777777766666677777777777776666677777777777776332 356777777777
Q ss_pred HCCCCCCHH
Q 001966 711 KRGVPLDGS 719 (989)
Q Consensus 711 ~~~~~~~~~ 719 (989)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 777766653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=631.77 Aligned_cols=547 Identities=18% Similarity=0.243 Sum_probs=453.6
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001966 224 FEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGC-RPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYV 302 (989)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 302 (989)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 566777888888888888888888888888888875 45777788888888888888888888888864 7888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 303 NLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG 382 (989)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 382 (989)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 383 KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKK--KNLVPSVFTYGVIIDGLCHCGDLRQINAI 460 (989)
Q Consensus 383 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (989)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888876 57888888888888888888888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 461 LGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLK 540 (989)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (989)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLI 620 (989)
Q Consensus 541 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 620 (989)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLT 700 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 700 (989)
.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|. +.+++|..+.+.+..-.. .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence 888888888888888888888888888888888886543 245555555444432210 01111122345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
+|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.+...+. ++..+|+.+++++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 6888888888888888888888888777777888888888877766655 7778888888887432 467888888888
Q ss_pred HCCCCCCHH
Q 001966 780 EEQVNPNHD 788 (989)
Q Consensus 780 ~~~~~~~~~ 788 (989)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 888888764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=566.45 Aligned_cols=469 Identities=22% Similarity=0.298 Sum_probs=272.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCcCHHHHHH
Q 001966 156 LVFNMLIDGYRKIGLLDEAVDLFLCDTGCE-FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGG-FEFDVYSYTT 233 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (989)
..|+.++.+|.+.|++++|+++|..|...+ +.|+..+|+.++.++.+.++++.+.+++..|.+ . +.||+.+||.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~----~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES----SGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCcchHHHHH
Confidence 456666666776677777777666665543 456666666666666666666666666666665 3 5566666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR 313 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 313 (989)
++.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 66666666666666666666643 56666666666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001966 314 LGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNE 393 (989)
Q Consensus 314 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (989)
.+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|. ++|+++||+||.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666553 23556666666666666666666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001966 394 IIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNA 473 (989)
Q Consensus 394 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (989)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 6655666666666666666666666666666655555555555555555555555555555555555555532 344
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001966 474 IIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGY 553 (989)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 553 (989)
.+||.+|.+|++.|+.++|.++|++|.+.|+ .||..||+.++.+|
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-----------------------------------~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGV-----------------------------------APNHVTFLAVLSAC 436 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHHHHHHHH
Confidence 4455555555555555555555554444444 44444444444444
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 554 CMAGEMQTAGRFFNEMLN-SGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 554 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 455555555555555443 344555555555555555555555555554433 2445555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 633 LGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGV 679 (989)
Q Consensus 633 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 679 (989)
..+++++.+.++. +..+|..+++.|++.|++++|.++++.|.+.|+
T Consensus 514 ~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 514 RLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5555555433211 344555555556666666666666666655554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=565.79 Aligned_cols=477 Identities=19% Similarity=0.298 Sum_probs=343.2
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 001966 259 CRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG-LVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYY 337 (989)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 337 (989)
..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567789999999999999999999999988764 67888888888888888888888888888888777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMR 417 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 417 (989)
.++++|++.|++++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 77777777777777777777774 35777777777777777777777777777777777777777777777776666
Q ss_pred ChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 001966 418 KMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVE 497 (989)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (989)
..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------- 286 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------- 286 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------------------------
Confidence 666666666666666666666666666666666666666665555553
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 498 RMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN 577 (989)
Q Consensus 498 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (989)
. +|.++||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||
T Consensus 287 ---~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 287 ---E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred ---C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 2 345555555555555555555555555555555555555555555555566666666666666666666666
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 001966 578 DVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITS 657 (989)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 657 (989)
..+|++|+++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66666666666666666666666666642 56677777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 658 FCKICDVDKAFQLYEEMCE-KGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQ 736 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 736 (989)
|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHH
Confidence 7777777777777777765 477778888888888888888888887777655 356778888888888888888888
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
|..+++++.+..|.+..+|..|+..|++.|++++|.+++++|.+.|+..
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 8888888777766666777788888888888888888888888777653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=533.75 Aligned_cols=872 Identities=14% Similarity=0.087 Sum_probs=757.3
Q ss_pred HHHHHHHhhccCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhh
Q 001966 66 VIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCF 145 (989)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (989)
.+......+...+++.|+..|+-+....+ .++.++..++.++.+.|++++|...+++++. .+.+
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------------ 88 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDP---NDAEARFLLGKIYLALGDYAAAEKELRKALS-LGYP------------ 88 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC------------
Confidence 34333344457899999999887775433 2779999999999999999999999999987 3222
Q ss_pred hccccccccchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 001966 146 RESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFE 225 (989)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (989)
+......++.+|...|++++|+..|..........+...+..+...+...|+++.|...|+++++ ..+
T Consensus 89 --------~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~ 156 (899)
T TIGR02917 89 --------KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA----IDP 156 (899)
T ss_pred --------hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC
Confidence 22355678899999999999999998775334444567788889999999999999999999998 666
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 305 (989)
.+..++..++..+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++..+..+ .+..++..++
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 234 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALA 234 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 678899999999999999999999999998864 36778899999999999999999999999988754 4677888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
..+...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.++. +...+..+...+.+.|+++
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987643 3445555666778899999999999999987543 3445556677788999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
+|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+...+..+...+.+.|++++|.++|+++.
T Consensus 313 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 313 QAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 4566788889999999999999999999998875 4467888999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001966 466 TRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545 (989)
Q Consensus 466 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (989)
+.. +.+...+..+...+...|++++|.+.++++.+.... .......++..+.+.|++++|..+++.+... .+++..+
T Consensus 391 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 467 (899)
T TIGR02917 391 ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASL 467 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHH
Confidence 864 346677888889999999999999999999876433 3445667788899999999999999999875 3457788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSK 625 (989)
Q Consensus 546 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 625 (989)
+..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 4566778889999999999999999999998863 4578889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 001966 626 KLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705 (989)
Q Consensus 626 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 705 (989)
.|+.++|...+.++...+.. +...+..++..+...|++++|..+++.+.+.. +.+..+|..+...+...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887543 66778889999999999999999999998763 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
|+.+.+.+ +.+...+..++..+.+.|++++|...++++.+..+.+..++..++..+...|++++|..+++.+.+.. ++
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 99998874 66788899999999999999999999999999999889999999999999999999999999999764 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...+..++..+...|++++|++.|+++... .|+..++..++.++.+.|++++|...++++++ ..|++. .+..++
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la 777 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALA 777 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 6778888999999999999999999999984 56668888899999999999999999999998 566554 788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
..+...|++++|.+.|+++++..+. ++.++..++..+...|+ .+|+.+++++++..|+ ++..+..++.++...|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999998765 88999999999999999 8899999999999888 8889999999999999999
Q ss_pred HHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhhhC
Q 001966 945 YAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQTA 989 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 989 (989)
+|.+.++++++.+ | |..++..++..+...|++++|++++++|.
T Consensus 855 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999998764 5 78899999999999999999999999873
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=512.88 Aligned_cols=842 Identities=14% Similarity=0.066 Sum_probs=735.8
Q ss_pred ChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHHHHHHcCChHHHHHHH
Q 001966 99 DLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLF 178 (989)
Q Consensus 99 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 178 (989)
+...+...+..+...|++++|...|.+++.. .|.++.++..++.+|.+.|++++|...|
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 79 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK---------------------DPNDAEARFLLGKIYLALGDYAAAEKEL 79 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6788899999999999999999999999881 1225568889999999999999999999
Q ss_pred HhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 001966 179 LCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKG 258 (989)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 258 (989)
..+.+.++. +......+...+...|++++|...+.+... ...+.....+..++..+.+.|++++|...|+++.+..
T Consensus 80 ~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 155 (899)
T TIGR02917 80 RKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTL---LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID 155 (899)
T ss_pred HHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhccccc---CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999887654 455667788899999999999999987653 0245567789999999999999999999999998865
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHH
Q 001966 259 CRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYA 338 (989)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 338 (989)
+ .+..++..++..+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++....++ .+..++..
T Consensus 156 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 232 (899)
T TIGR02917 156 P-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLA 232 (899)
T ss_pred C-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 4 456788899999999999999999999998864 34778889999999999999999999999988754 47788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001966 339 LIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 418 (989)
++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+++.+.+ +.+...+..+...+...|+
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCC
Confidence 999999999999999999999987543 33444445556678899999999999998875 2334456667778889999
Q ss_pred hhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 001966 419 MVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVER 498 (989)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (989)
+++|...++++.+.. +.+...+..+...+.+.|++++|...+.++.+.. +.+...+..+...+.+.|++++|.++|++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998874 3456778888999999999999999999998764 45678889999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001966 499 MRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPND 578 (989)
Q Consensus 499 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (989)
+.+... .+...+..+...+...|++++|...++.+.+.... .......++..+.+.|++++|.++++.+.... +++.
T Consensus 389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 465 (899)
T TIGR02917 389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNA 465 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCc
Confidence 987643 25677888888999999999999999999886533 34556677888999999999999999998754 5677
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 001966 579 VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSF 658 (989)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 658 (989)
.++..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++.+...++. +..++..+...+
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 543 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 889999999999999999999999998763 446777888999999999999999999999987544 778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
...|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+. .+.+...|..++..+...|++++|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998774 346778888999999999999999999999876 4778899999999999999999999
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
..|+.+.+..+.+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 99999999988888899999999999999999999999999753 3367889999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
+++...+..++..+...|++++|...|+++++ ..|+..++..++.++.+.|++++|.+.++++++..+. +..++..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 56777889999999999999999999999999 6787788888999999999999999999999998765 88999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+..|...|++++|...|+++++..|+ ++.++..+++++...|+ .+|+..++++.+. .|+ +..+..++..+...|+
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987 89999999999999999 8899999999764 675 6778899999999999
Q ss_pred hhhHHHHHhhh
Q 001966 978 LDESKDLMKQT 988 (989)
Q Consensus 978 ~~~a~~~~~~~ 988 (989)
+++|.+.++++
T Consensus 853 ~~~A~~~~~~a 863 (899)
T TIGR02917 853 ADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-30 Score=316.54 Aligned_cols=687 Identities=12% Similarity=0.052 Sum_probs=418.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 001966 195 ALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLC 274 (989)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 274 (989)
..++.....++.+.|.+.++++.. ..+.|+.++..++..+.+.|+.++|.+.+++..+.. |+...+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~------ 100 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLEL----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS------ 100 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH------
Confidence 345555667777777777777776 455567777777777777777777777777777653 33222111
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
....+.. ..|+......+...+.+.|++++|.+.|+.+.+.+++................|+.++|.+
T Consensus 101 ----------~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 101 ----------SRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred ----------HHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 0111111 1233333444555666777777777777777765432222111111122223477777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
.++++.+..+. +...+..+...+...|+.++|+..|+++.+.. +. +...+...+..+...+.
T Consensus 169 ~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 169 QLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCC
Confidence 77777766432 55566666777777777777777777765431 11 01112222222222222
Q ss_pred CcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 001966 435 VPSV-FTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNS 513 (989)
Q Consensus 435 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 513 (989)
.+.. ..+...+..+-.....+.|...+.++......|+... ......+...|++++|+..|++..+.... +...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2211 1222222222233334555555555444322222211 12234455566666666666666654221 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 001966 514 LIIGLCKAKRMDEARIYLVEMLRRGLKPN-IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEG 592 (989)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 592 (989)
+...+.+.|++++|+..|++.++...... ...+..++.. ............+.+.|
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~-----------------------~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV-----------------------NRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh-----------------------hhHHHHHHHHHHHHHCC
Confidence 66666666666666666666665432211 1111111000 00000011123344455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 593 NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYE 672 (989)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 672 (989)
++++|+..|+++++.. +.+...+..+...+...|++++|++.|+++++.... +...+..+...+. .++.++|..+++
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 5555555555555431 223444444555555555555555555555544222 2333333333332 234455555544
Q ss_pred HHHHCCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 673 EMCEKGV--------EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 673 ~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
.+..... ......+..+...+...|++++|++.+++..+.. |.+...+..+...|.+.|++++|+..++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3321100 0011234556777888899999999999988864 556777888888899999999999999999
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH---------DTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
++..|.+...+..++..+...++.++|+..++++......++. ..+..++..+...|++++|+++++.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 8888877777777777778889999999988876543222221 1233456778899999999999872
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 816 RNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 816 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
.+++...+..++..+.+.|++++|+..|+++++ ..|++. .+..++.++...|++++|++.++++.+..+. +...
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~ 673 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNT 673 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHH
Confidence 356677888899999999999999999999999 788765 8888999999999999999999999887654 7788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLG-----FASCRTVANDFLREGVMDYAAKVLECMAS-FGWVS 960 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 960 (989)
+..++.++...|++++|.++++++++..++.. ..++..++.++...|++++|.+.|++++. .|+.|
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 88999999999999999999999998765422 24667789999999999999999999853 44554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=316.07 Aligned_cols=652 Identities=13% Similarity=0.082 Sum_probs=470.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---------
Q 001966 301 YVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIY--------- 371 (989)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------- 371 (989)
....+...-..++.+.|.+.+.++....+. |+.++..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 444556667788899999999888876533 6777888888888999999999999998887533 22221
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHH
Q 001966 372 -------NTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR-TYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGV 443 (989)
Q Consensus 372 -------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (989)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............|+.++|++.++++.+.. +-+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 223345667788888888888777653 33321 11111111223577788888888877764 235556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcC
Q 001966 444 IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDV-SCFNSLIIGLCKAK 522 (989)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g 522 (989)
+...+...|+.++|...++++.... +. ....+...+..+...+..++. ..+...+..+-...
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 7777777788888888887776532 11 011112222222222222221 12222222222333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 523 RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFR 602 (989)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (989)
..+.|...+.........|.... ......+...|++++|+..|++.++.. +.+..++..+...|.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666554433333222 233566778899999999999988764 4467888899999999999999999999
Q ss_pred HHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 603 CMLARGILP-EVQTY------------SVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 603 ~~~~~~~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
+.++..... ....| ......+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 988753221 11112 12245677899999999999999987543 66777888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--------PLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
.|+++++.. +.+...+..+...|. .++.++|..+++.+..... ......+..+...+...|++++|++.|
T Consensus 407 ~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 407 YYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999863 235566777777774 4678999998876543210 011234556778888999999999999
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 742 RDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA 821 (989)
Q Consensus 742 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 821 (989)
+++++..|.+...+..++..|.+.|++++|...++++++... .+...+..+...+...|+.++|+..++.+......++
T Consensus 485 ~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 485 RQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 999999998889999999999999999999999999987532 2555555666667889999999999988754322222
Q ss_pred HH---------HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001966 822 TI---------TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 822 ~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
.. .+..++..+...|+.++|..+++. ..++...+..++..+.+.|++++|++.|+++++..|. +.
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~ 637 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NA 637 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 21 234567788999999999999872 2234447778899999999999999999999998766 89
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-c------hhH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-S------ISL 965 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~------~~~ 965 (989)
.++..++.++...|++++|++.++++.+..|+ ++.++..++.++...|++++|.+.++++++. .|+ + ..+
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ--AKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh--CccCCcchhhHHHH
Confidence 99999999999999999999999999988877 7888999999999999999999999999764 232 1 355
Q ss_pred HHHHhhhhcCCChhhHHHHHhhh
Q 001966 966 ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 966 ~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..+...|++++|++.+++.
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 67789999999999999998763
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-27 Score=274.44 Aligned_cols=679 Identities=9% Similarity=-0.009 Sum_probs=382.2
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 001966 201 LKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVD 280 (989)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 280 (989)
...|++++|...|+++++ ..|.+..++..+..+|.+.|++++|+..+++..+.. |+...|..++..+ ++++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQ----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccCh
Confidence 334888888888888887 666677888888888888888888888888888753 4433333333333 7888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH-HHHHHHcCCHHH
Q 001966 281 EAVELKNSMVEKGLVPDSYTYVNLIYG--------FSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL-IDGFVKQGDVEE 351 (989)
Q Consensus 281 ~A~~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 351 (989)
+|..+++++.+..+. +...+..+... |.+. ++|.+.++ .....+.|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 888888888876433 23333333333 4333 44444444 3333333344433333 667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 352 AFRVKDELVASGNQIDLVIYNTLLKGFCK-SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMK 430 (989)
Q Consensus 352 A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (989)
|.+.+.++.+.++. +......|...|.+ .++ ++|..+++. .++.|...+..+...|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 77777777776533 34445556566666 355 556555442 223455666666666777777777776666654
Q ss_pred hCCCC-cCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 001966 431 KKNLV-PSVFTYGVIIDGLCHCGDLR-QINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPD 507 (989)
Q Consensus 431 ~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 507 (989)
..-.. |...++.-+ +.+.+... .|..-|.+ . ..++ ......++..+.+.+.++
T Consensus 275 ~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~----------------- 330 (987)
T PRK09782 275 PLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYD----------------- 330 (987)
T ss_pred ccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHH-----------------
Confidence 43211 222222211 22322221 11111111 0 0000 111122234444444444
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 001966 508 VSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDG 587 (989)
Q Consensus 508 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (989)
.+.++.. +.|.......-..+....+...++.+.+..|.... +-+......+.-.
T Consensus 331 ------------------~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~ 385 (987)
T PRK09782 331 ------------------AAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ 385 (987)
T ss_pred ------------------HHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3332210 11211111111111112233444444444443321 2233333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001966 588 YCKEGNIAEAISKFRCMLAR-G-ILPEVQTYSVLINGLSKKLEL---REALGIFLELLEKGLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 662 (989)
..+.|+.++|.++|+..... + ..++.....-++..+.+.+.. .++..+...+ +...- +.-.|
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~------~~~~~ 452 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL-------PLAEQ------RQWQS 452 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc-------ccchh------HHHHh
Confidence 45555556666555555441 0 112233333455555555542 2222221111 11111 11123
Q ss_pred CHHHHHHHHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 663 DVDKAFQLYEEMCEK-GV-EP--NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
+..++...+...... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 333322222222221 11 23 45566666666655 6777777777666654 244433334444455778888888
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
..|+++....+ ....+..++..+.+.|++++|...+++.++.. ++....+..+.......|++++|+..+++..+ .
T Consensus 530 ~~~rka~~~~p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l 605 (987)
T PRK09782 530 AAWQKISLHDM-SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--I 605 (987)
T ss_pred HHHHHHhccCC-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h
Confidence 88877655433 33445566777777888888888888777653 11223333333344455888888888888877 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.|+...|..++.++.+.|++++|+..++++++ ..|+.. .+..++.++...|++++|++.++++++..|. ++.++..
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~n 682 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQ 682 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 56777788888888888888888888888888 777665 6666777888888888888888888887665 7778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENS 974 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 974 (989)
++.++...|++++|+..++++++..|+ +..+....+++..+..+++.|.+.+++... +.|+..+....+..+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~ 756 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTA 756 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhh
Confidence 888888888888888888888888776 677777888888888888888887776643 35554444444443333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-26 Score=269.09 Aligned_cols=697 Identities=10% Similarity=0.015 Sum_probs=449.6
Q ss_pred hHHHHHHH--HHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 157 VFNMLIDG--YRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 157 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
++..+..+ +...|++++|+..|+++.+..+. +..++..+...+...|++++|....+++++ ..|.|...+..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~----ldP~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLK----RHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHHHHH
Confidence 34444444 44459999999999999887655 378889999999999999999999999998 666677777666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--------HHccCChhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGG--------LCRVGFVDEAVELKNSMVEKGLVPDSYTYVNL-I 305 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i 305 (989)
... +++.+|..+++++.+..+ .+..++..+... |.+. ++|.+.++ .......|+....... .
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHH
Confidence 433 999999999999998743 345555555555 6665 44554444 4444445555555554 8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVK-QGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKM 384 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 384 (989)
..|.+.|++++|+..+.++.+.++. +......|...|.. .++ ++|..+++.. ++-+...+..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCH
Confidence 8999999999999999999998744 46667778888888 477 8888886642 335888999999999999999
Q ss_pred HHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHH
Q 001966 385 EKAREVLNEIIRMGIE-PNSRTYTSLIQGYCRMRKMV-SAFELLDEMKKKNLVPSV-FTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 385 ~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
++|.++++++...-.. |...+|-.+ +.+.+... .|..-|.+ + ..++. .....++..+.+.++++.+.++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999998654222 444444443 44555443 12222221 1 11111 12223477888999998666552
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-C
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRR-G-L 539 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~ 539 (989)
. +.|.......-..+....+...++...++.|.+... -+....-.+.-...+.|+.++|.++++..... + .
T Consensus 337 ~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 337 A------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred c------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 2 233332211111122234666777777776665421 14444444444455677777777777776652 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 540 KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVL 619 (989)
Q Consensus 540 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 619 (989)
.++......++..|.+.+......+...-.. +++...- +.-.|+..++
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~---------------------- 457 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGI---------------------- 457 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhh----------------------
Confidence 1222233355555555544322222211110 0000000 0001111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 620 INGLSKKLELREALGIFLELLEKGLVP--DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 620 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
..+...+...... .++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|
T Consensus 458 ----------~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 458 ----------ADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred ----------hhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 1112222222221 112 34455555555544 6666677766666554 344444334444556778
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDA 777 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 777 (989)
++++|...|+++... +|+...+..+...+.+.|+.++|...+++.++..+.....+..+...+...|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888776553 444455666677777788888888888888877665554444455555566888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 001966 778 MLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN 857 (989)
Q Consensus 778 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 857 (989)
.++. .|+...+..+..++.+.|++++|+..+++..... +.+...+..++..+...|++++|+..++++++ +.|+.
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~ 676 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDD 676 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8865 4567778888888888888888888888888742 33456778888888888888888888888888 77865
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 858 F-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 858 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
. .+..++.++...|++++|+..++++++..+. +..+....+....+..+++.|.+-+++....++. ..+....+.+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~--~~a~~~~g~~ 753 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD--SSIGLRSGAM 753 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc--chhccccchH
Confidence 5 7777888888888888888888888887655 6677777888888888888888888887777654 3366667777
Q ss_pred HHhcCCh
Q 001966 937 FLREGVM 943 (989)
Q Consensus 937 ~~~~g~~ 943 (989)
+...+++
T Consensus 754 ~~~~~~~ 760 (987)
T PRK09782 754 STANNNV 760 (987)
T ss_pred hhhcccc
Confidence 7766665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-23 Score=227.57 Aligned_cols=597 Identities=12% Similarity=0.103 Sum_probs=437.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001966 349 VEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMG--IEPNSRTYTSLIQGYCRMRKMVSAFELL 426 (989)
Q Consensus 349 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (989)
++.|...|..+++..+ +|+...-.-.+.....|++..|+.+|..++... ..||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5888888888887743 355554444444556788888888888866542 234432 23345555888888888888
Q ss_pred HHHHhCCCCcCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 427 DEMKKKNLVPSVFTYGVIIDGLCH---CGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREG 503 (989)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 503 (989)
.+..+.++ -++.++..|...-.. ...+..+..++...-... +.|++..+.|...|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 88888643 233333333322222 234555666666655543 4577788889999999999999999988887643
Q ss_pred CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 001966 504 ITP--DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIY 581 (989)
Q Consensus 504 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (989)
..- -...|-.+..+|-..|++++|...|.+..+....-....+..+...+.+.|+++.+...|+.+.+.. +.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence 111 1234667888899999999999999888775332224456677888999999999999999988764 5566777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHH
Q 001966 582 TSIVDGYCKEG----NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELL----EKGLVPDVDTYNS 653 (989)
Q Consensus 582 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~ 653 (989)
..|...|...+ ..+.|..++.+..+. .+.|...|-.+...+....-+ .++..+..+. ..+-.+.....|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777765 567777777777765 345777888777766555443 3376666544 3455567788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 654 LITSFCKICDVDKAFQLYEEMCEK---GVEPNT------LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
+...+...|++..|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+. .|.-...|..+
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHh
Confidence 999999999999999999988754 112222 23334556666778999999999999987 35455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYTTLINQYCK---- 799 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 799 (989)
+......++..+|..+++..+..+..++.++..++..+.+...+..|..-|+.+.+. ...+|..+..+|++.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 644555688899999999999988888888888998999888888888877777643 223577777778886643
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001966 800 --------VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG 871 (989)
Q Consensus 800 --------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 871 (989)
.+..++|+++|.+.++.. +-|..+-+.++-++...|++.+|..+|.+..+.. .-...+|.+++.+|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 356789999999998853 5677888999999999999999999999999842 224458999999999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc----------
Q 001966 872 NVMEALKLKDLIFDK-RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE---------- 940 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 940 (989)
+|-.|+++|+..... ....+..+...|++++.+.|++.+|.+.+.++....|. ++...+.++.+..+.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHHHhcccc
Confidence 999999999999876 55668899999999999999999999999999999988 777766666655433
Q ss_pred ---------CChhHHHHHHHHHHhCC
Q 001966 941 ---------GVMDYAAKVLECMASFG 957 (989)
Q Consensus 941 ---------g~~~~A~~~~~~~~~~~ 957 (989)
+..+.|.++|..+...+
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34466777777776544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-23 Score=223.08 Aligned_cols=576 Identities=14% Similarity=0.117 Sum_probs=433.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 384 MEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN--LVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 384 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
++.|...|....+.. ++|+..+-.-.......+++-.|+.+|......+ ..||+. -.+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 589999999998875 5565444333344456889999999999976653 344443 23446677999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKK---NKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 538 (989)
...++.+. .++.++..|...-... ..+..+..++...-.... -|++..+.|..-|.-.|++..+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998742 2333333333322222 345667777766655433 367788889999999999999999999888653
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001966 539 LK--PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTY 616 (989)
Q Consensus 539 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 616 (989)
.. .-...|-.+..+|-..|++++|..+|.+........-...+..++..|.+.|+++.+...|+..... .+.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 21 1234577889999999999999999998887642222345667889999999999999999999987 34466777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHH
Q 001966 617 SVLINGLSKKL----ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMC----EKGVEPNTLTYNV 688 (989)
Q Consensus 617 ~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~ 688 (989)
.++...|...+ ..+.|..++....+.-+ .|...|-.+...+. .++...++..|..+. ..+-.+.....|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 45667777777666542 36677776666554 455555577776655 4455678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKR---GVPL------DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
+...+...|++++|...|...... ...+ +..+-..+.......++.+.|.+.|+.++...|.-...+..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999988764 1122 2223445666777788999999999999999987777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH-----
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYN----- 833 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~----- 833 (989)
......+...+|...+...+... ..++..+..+++.+.+...+..|.+-|+...+. ...+|.....+|++.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 66666788999999999998642 446677788888999998999999877777654 22467777777777653
Q ss_pred -------hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 834 -------RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 834 -------~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..++|+.+|.+++. ..|.+. +-+-++-++...|++.+|..+|.++.+.... ...+|..++.+|..+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHH
Confidence 34467889999999998 788665 6666888899999999999999999987543 678999999999999
Q ss_pred CCHHHHHHHHHHHHHCCC-ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhh
Q 001966 906 EEYSEALRLLNEMGESGF-RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGEN 973 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 973 (989)
|++-.|+++|+...+... +-++.+...|+.+++..|++.+|.+.+..+... .| |+...++++-...
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHH
Confidence 999999999999887643 346889999999999999999999999988654 67 4555566655543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-26 Score=233.20 Aligned_cols=453 Identities=17% Similarity=0.146 Sum_probs=217.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001966 477 TNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMA 556 (989)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 556 (989)
..|..-..+.|++.+|++.-...-..+.. +....-.+-.++.+..+++.....-...++.. +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 44445555666666666655444332211 12222222334445555555444443333332 12344555555666566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 001966 557 GEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQT-YSVLINGLSKKLELREALGI 635 (989)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~ 635 (989)
|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+... .+.+...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 66666666666555543 223345555555555555555555555555543 333322 22233333344555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 001966 636 FLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN-TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV 714 (989)
Q Consensus 636 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 714 (989)
+.+.++.... -.+.|+.|...+-..|+...|+..|++.++. .|+ ...|-.|...|...+.++.|...+.+.....
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 5555443221 2334444544455555555555555555443 222 2344445555555555555555555444431
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLI 794 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 794 (989)
|...+++..+...|..+|..|-|+..|++.++..|.-+.+|+.|+.++-..|++.+|.+.|.+.+.... ......+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 333444444444455555555555555555555554444555555555555555555555555544311 1233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 795 NQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN 872 (989)
Q Consensus 795 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 872 (989)
+.|...|.+++|..+|....+ +.|. ....+.|+..|...|++++|+..|++++. +.|... ++.+++..|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 555555555555555555444 3333 22445555555555555555555555555 555443 45555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
.++|++.|.+++..+|. -.+++..|+..|...|+..+|+..|+.+++..|+ .+.++-.++.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 55555555555544433 3444555555555555555555555555555444 44444444444444444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=229.47 Aligned_cols=453 Identities=14% Similarity=0.114 Sum_probs=340.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
...+..-..+.|++++|++.-...-..+ +.+......+-.++.+..+++.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455566667888888887665544332 2233333344455666666666665554444433 3445678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT-YNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~ 669 (989)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|++.+|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888888752 235678888888888888888888888888775 343332 2333444556788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
.|.+.++... -=.+.|+.|...+..+|++..|++.|++..+.+ |.-...|..|...|...+.++.|+..|.+++...|
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 8888877521 134567888888888888888888888888764 44467788888888888888888888888888888
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRS 827 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 827 (989)
....++..++..|..+|.++-|+..|++.++. .|+ ...|+.|.+++-..|+..+|.+.|.+.+. +.|+ ....+.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 88888888888888888888888888888875 443 46788888888888888888888888887 4455 557888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
|+..|...|++++|..+|.+.++ +.|+-. ..++|+..|-++|++++|+..|++++...|. -..+|..++..|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhh
Confidence 88888888888888888888888 888766 7788888888888888888888888876544 5678888888888888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhh
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDE 980 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 980 (989)
+...|++.+.++++.+|. -..++..|+.+|...|+..+|++.|+.+++ ++|| ++.+-+++..+.--.+|.+
T Consensus 437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888888888888877 678888888888888888888888888865 5888 5666666666655455544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-20 Score=217.17 Aligned_cols=254 Identities=15% Similarity=0.069 Sum_probs=142.2
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRG--VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..+++.++..|....++..++..+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666655542 1223344555555555666666666666666666555555566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE 854 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 854 (989)
++++++.. +.+...|..++..+...|++++|+..|++..+.. +.+...+..++..+.+.|++++|+..++++++ ..
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~ 463 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NF 463 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 66665542 1234555566666666666666666666666531 22344555566666666666666666666665 45
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH
Q 001966 855 PDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE------AYKAIIKALCKREEYSEALRLLNEMGESGFRLGF 927 (989)
Q Consensus 855 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 927 (989)
|+.. .+..++.++...|++++|++.|+++++..+..+.. .+......+...|++++|+.+++++++..|+ +.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cH
Confidence 5433 55555666666666666666666666553321110 0111111222346666666666666666554 45
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..++.++...|++++|.+.++++.+
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566666666666666666666666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-19 Score=210.45 Aligned_cols=259 Identities=14% Similarity=0.083 Sum_probs=214.5
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKG-VEP-NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
..+++++|.+.|+..++.+ ..| ....+..+...+...|++++|+..+++..+.. |.+...|..+...+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3467899999999998764 223 45567788888889999999999999998863 44577888899999999999999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
+..|+++++..+.+..++..++..+...|++++|+..|++.++.. +.+...+..++..+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999999988888899999999999999999999999999763 225677888899999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HH-------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TY-------YVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
.+.+...++.++..+...|++++|+..|++.++ +.|+.. .+ ......+...|++++|+++++++++.++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 244577899999999999999999999999998 666432 11 11122333469999999999999988755
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+..++..++.++.+.|++++|++.|+++.+....
T Consensus 541 -~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 -CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 6678999999999999999999999999887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-17 Score=168.93 Aligned_cols=603 Identities=13% Similarity=0.108 Sum_probs=393.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001966 347 GDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELL 426 (989)
Q Consensus 347 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (989)
+++..|..++..+.+.++. +...|-+-.+.--..|++..|..+..+--+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 4566777777777776543 4555655555555666666666655433222 12333333322 3455566666666
Q ss_pred HHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 001966 427 DEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITP 506 (989)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 506 (989)
....+.. +-++..|.- +---..+...-.+++++.++. ++.++..|-..+ .....+.|.-++.+..+- ++.
T Consensus 339 A~Avr~~-P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLK---AADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHhC-CCChhhhhh---HHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccc
Confidence 6666542 222322221 111122334445666776665 344444444433 445566677777777663 222
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHhHH
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEML----NSGLVPNDVIYT 582 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 582 (989)
+.. |.-+|.+..-|+.|..++++..+. ++.+...|.+....--..|+.+...+++++-+ ..|+..+...|.
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 222 334566677788888888887765 55577777777777777888887777776543 456666766676
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 583 SIVDGYCKEGNIAEAISKFRCMLARGILP--EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.=...+-..|..--+..+....+.-|+.. -..||..-...|.+.+.++-|..+|...++-.+. +...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 66666777777777777777666666543 2346777777777777777777777777665322 55566666555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
-|..+.-..+|++.... ++-....|...+.-+...|+...|..++..+.+.+ +.+...|.+.+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 67777777777777765 23344455555566666777777777777777663 55677777777777777777777777
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK 819 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 819 (989)
|.+..... +....|..-+......+..++|++++++.++. .|+ ...|..++..+-+.++++.|.+.|..-.+. ++
T Consensus 641 lakar~~s-gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSIS-GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhccC-CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 77776643 34455555566666677777777777777764 333 356777777777777777777777766653 34
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 820 PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 820 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
-....|..|...-.+.|+.-.|..++++..- -+|++. .|...+.+-.+.|+.+.|..+..++++.-+. +...|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHH
Confidence 4455677777777777777777777777766 466554 6666777777777777777777777765433 55666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+....+-++-..+...+++ .+-|+++....+..++...+++.|+++|++++.. .|| +++|..+...+..-|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 6666666665555555544 2237889999999999999999999999999865 786 8899999999988898
Q ss_pred hhhHHHHHhh
Q 001966 978 LDESKDLMKQ 987 (989)
Q Consensus 978 ~~~a~~~~~~ 987 (989)
-++-.+++++
T Consensus 867 eed~kev~~~ 876 (913)
T KOG0495|consen 867 EEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHH
Confidence 8877777664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-17 Score=177.42 Aligned_cols=384 Identities=11% Similarity=0.097 Sum_probs=181.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (989)
|++++|.+++.+..++.+. +...|.+|...|-..|+.+++...+-.....++. |...|..+.+...++|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555555544322 3444555555555555555555444444333222 3344444445555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 357 DELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR----TYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 357 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|.. +--..+..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 555444221 22222223333444455555555555544432111111 1111222333334344444444444331
Q ss_pred C-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--HCCCCCCHh
Q 001966 433 N-LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR--REGITPDVS 509 (989)
Q Consensus 433 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~ 509 (989)
+ -..+...++.++..+.+...++.|......+.....++|..-|.+-= .++ .-+.-.. ..+..++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCccch
Confidence 1 11122334444444444444444444444443332233322221000 000 0000000 011122222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 001966 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKP--NIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDG 587 (989)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (989)
. ..+.-++......+....+.....+....| +...|.-+..++...|++.+|+++|..+.......+..+|--+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 112223344444444444455555554332 3455777777777888888888888777766555566677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHH
Q 001966 588 YCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLE--------KGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~li~~~~ 659 (989)
|...|.+++|+..|+..+.. -+.+...-..|...+.+.|+.++|.+.+..+.. .+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 88888888888888777765 233455556666677777888888777777542 123344444444445556
Q ss_pred hcCCHHHHHHHHHHHH
Q 001966 660 KICDVDKAFQLYEEMC 675 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~ 675 (989)
..|+.++=+.+-.+|+
T Consensus 538 ~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 538 QVGKREEFINTASTLV 553 (895)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 6666665444444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-20 Score=210.36 Aligned_cols=362 Identities=12% Similarity=0.052 Sum_probs=222.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSG--LVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELR 630 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 630 (989)
+.++.+++.-.-+|....++. ...+..-...++..+.+.|++++|..+++..+... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 345555655555554433221 11122233445566667777777777777776652 223444445555566677777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710 (989)
Q Consensus 631 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 710 (989)
+|...++++....+. +...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777777765433 45556666666777777777777777776652 2245566666677777777777777777665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 711 KRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 711 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
... +.+...+..+ ..+...|++++|+..++.++...+ ++......++..+...|++++|+..++++++.. +.+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 542 3333333333 235666777777777777766654 333334445566667777777777777777543 224556
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 790 YTTLINQYCKVQNMEK----AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+..+...+...|++++ |+..|++..+.. +.+..++..++..+...|++++|...++++++ ..|+.. .+..++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 6667777777777764 677777776632 23355667777777777777777777777776 566554 555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.++.+.|++++|++.++++.+.++. +...+..++.++...|+.++|+..|+++++..|+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777777777777777777765443 3344444566677777777777777777776655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-17 Score=175.35 Aligned_cols=361 Identities=14% Similarity=0.127 Sum_probs=171.7
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001966 242 RNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVL 321 (989)
Q Consensus 242 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (989)
|++++|.+++.++++..+ .+...|-+|...|-..|+.+++...+--.--..+ .|...|..+.....+.|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 444444444444444321 2334444444444444444444433222221111 13344444444444445555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHC
Q 001966 322 SELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYN----TLLKGFCKSGKMEKAREVLNEIIRM 397 (989)
Q Consensus 322 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~ 397 (989)
.+.++..+ ++...+..-+..|-+.|+...|..-|.++.+..++.|..-+- ..++.+...++.+.|.+.++.....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 55544432 123333333444555555555555555555543221221111 1233344445555555555555441
Q ss_pred C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhH--------------------------HHHHHHHHh
Q 001966 398 G-IEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTY--------------------------GVIIDGLCH 450 (989)
Q Consensus 398 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------------~~li~~~~~ 450 (989)
+ -..+...++.++..+.+...++.|......+..+...+|..-+ -.+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 1223334555555566666666665555555442222221111 112223333
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 001966 451 CGDLRQINAILGEMITRG--LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEAR 528 (989)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 528 (989)
....+....+.....+.. ...++..|..+..+|...|++.+|+.+|..+.....--+...|-.+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333444444443 223344566666677777777777777776665433334556666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001966 529 IYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLN--------SGLVPNDVIYTSIVDGYCKEGNIAEAISK 600 (989)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (989)
+.|+..+...+ .+...-..|...+.+.|+.++|.+.+..+.. .+..|+........+.+.+.|+.++-+..
T Consensus 470 e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77776666422 2344555555666667777777766666431 12233333444445555666666665444
Q ss_pred HHHHHH
Q 001966 601 FRCMLA 606 (989)
Q Consensus 601 ~~~~~~ 606 (989)
-..|+.
T Consensus 549 ~~~Lv~ 554 (895)
T KOG2076|consen 549 ASTLVD 554 (895)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-19 Score=210.85 Aligned_cols=413 Identities=10% Similarity=0.032 Sum_probs=247.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 001966 514 LIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN 593 (989)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 593 (989)
.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.+... +.+...+..++..+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3344444555555555555554311 2233344555555555555555555555554432 2233344444445555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 594 IAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEE 673 (989)
Q Consensus 594 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 673 (989)
+++|+..++++++. .+.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+..+.|+..++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 55555555555443 122333 444444444555555555555555444322 233333334444444444444444433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHHHHHHHHH
Q 001966 674 MCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGC-----CKEEKL---EQALELFRDML 745 (989)
Q Consensus 674 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~ 745 (989)
... .|+.. .. + .......++... ...+++ ++|++.++.++
T Consensus 176 ~~~---~p~~~--~~-l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 176 ANL---TPAEK--RD-L--------------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCC---CHHHH--HH-H--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 321 11100 00 0 000011111111 111223 67778888877
Q ss_pred HcCC--CCh-hhH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 746 EKGL--AST-LSF----NTLIEFLCISNKLQEAHQLLDAMLEEQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 746 ~~~~--~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
+..+ |+. ..+ ...+..+...|++++|+..|+++++.+.. |+. ....+...|...|++++|+..|+++.+.
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~- 301 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH- 301 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc-
Confidence 5422 211 111 11123445678888888888888876422 322 2222466788888899999888887763
Q ss_pred CCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CH---HHHHHHHHHHHhcCCHHHH
Q 001966 818 LKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-------------DN---FTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 818 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~---~~~~~l~~~~~~~g~~~~A 876 (989)
.|. ......+..++...|++++|...++++.+ ..| +. ..+..++..+...|++++|
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~--~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTIN--NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh--cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 222 24566677778888999999998888887 333 32 2445667888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++.+++++...|. +..++..++..+...|++++|++.++++++..|+ +...+..++.++...|++++|+++++.+++.
T Consensus 379 ~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999988766 7899999999999999999999999999999988 8889999999999999999999999999875
Q ss_pred CCcccchhHHHHHhhh
Q 001966 957 GWVSNSISLADIVKGE 972 (989)
Q Consensus 957 ~~~p~~~~~~~l~~~~ 972 (989)
.||......+.+.+
T Consensus 457 --~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 --EPQDPGVQRLARAR 470 (765)
T ss_pred --CCCCHHHHHHHHHH
Confidence 78877776666665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-15 Score=158.76 Aligned_cols=622 Identities=12% Similarity=0.037 Sum_probs=421.1
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
++..+|..+++...+.++. ++..|.+-...--..|++..|..+...--+. ++.+...|---+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 3445555566665555432 3333333333334455555555554443332 222334443322 333445555555
Q ss_pred HHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 392 NEIIRMGIEPNS-RTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470 (989)
Q Consensus 392 ~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (989)
-...+. -|++ ..|--.+. -..+...-..++++..+. ++-++..|. +.....+.+.|.-++.+..+. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-cc
Confidence 555543 2332 22222111 122233334555555554 233333333 334455666677777777764 22
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHH
Q 001966 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEML----RRGLKPNIHSF 546 (989)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 546 (989)
.+. -|.-+|.+...++.|..++.+..+. ++.+...|.+....--.+|+.+....++.+-+ ..|+..+...|
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 233 3344556667788888888887764 55567777766666667788887777766543 45777777778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 547 RAFILGYCMAGEMQTAGRFFNEMLNSGLVPND--VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLS 624 (989)
Q Consensus 547 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 624 (989)
..=...+-..|..-.+..+....+..|+.... .+|..-.+.|.+.+.++-|..+|...++- .+-+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 77777788888888888888888777655433 46777778888888888888888887775 3446677777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001966 625 KKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQ 704 (989)
Q Consensus 625 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 704 (989)
..|..++-..+|+++...-++ ....|......+...|++..|..++.+..+... .+...|-.-+........++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHH
Confidence 788888888888888876332 455666666677778888888888888887743 366777777787888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001966 705 LFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN 784 (989)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 784 (989)
+|.+.... .|+..+|..-+....-.++.++|+.++++.++..|.-...|..+++.+.+.++++.|.+.|..-.+. ++
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 88887764 5677777777777777888888888888888888777778888888888888888888888777654 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 785 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
.....|..+...--+.|.+-+|..++++..-++ +.+...|...++.-.+.|+.+.|..+..++++ -.|++. .|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 345677777777778888888888888887754 55677888888888888888888888888887 556555 56666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+...-+.++-......+++. +.|+.+...++..+....+++.|.+.|+++++.+|+ ...+|..+-..+...|.-
T Consensus 794 I~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCH
Confidence 66666666655555555443 346677778888888888888888888888888877 777787788888888888
Q ss_pred hHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 944 DYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
++-.+++++.... +|. +..|..+...-
T Consensus 868 ed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 868 EDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 8888888877554 665 56665554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=208.50 Aligned_cols=364 Identities=15% Similarity=0.072 Sum_probs=297.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 001966 587 GYCKEGNIAEAISKFRCMLARG--ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 664 (989)
.+.+..+++.-.-+|....+.- -..+......++..+.+.|++++|..++...+...+.+ ...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH
Confidence 4456777777666665544331 01122334456677889999999999999999886664 44455555667789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |.+...+..++..+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 2356778888899999999999999999999863 667888899999999999999999999999
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 824 (989)
....|.+...+..+. .+...|++++|...++++++....++...+..++..+...|++++|+..+++..+.. +.+...
T Consensus 171 ~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 888886665555543 478899999999999998876433445555666788899999999999999999853 445678
Q ss_pred HHHHHHHHHhcCCHhH----HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSE----VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+..++..+...|++++ |...++++++ +.|+.. .+..++..+...|++++|+..++++++..+. +..++..++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 8899999999999986 8999999999 888766 7888999999999999999999999998766 788899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++.+.|++++|+..++++++..|. ++..+..++.++...|++++|.+.|+++.+. .|+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chh
Confidence 9999999999999999999998877 6666677889999999999999999998765 454
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=204.61 Aligned_cols=299 Identities=15% Similarity=0.105 Sum_probs=160.1
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHcc
Q 001966 200 LLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN---VATYNVVIGGLCRV 276 (989)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 276 (989)
+...|+++.|+..|.++++ ..+.+..++..++..+.+.|++++|..+++.+.+.+..++ ..++..++..|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3455566666666666665 3444555666666666666666666666666655421111 13455556666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHHcCCHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDT----VAYYALIDGFVKQGDVEEA 352 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 352 (989)
|++++|..+|+++.+.. .++..++..++..+++.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666665542 224455555666666666666666666665554432221 1234455555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 353 FRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 353 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
...|+++.+..+ .+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666655432 2344555555666666666666666666654421111234555555555666666666665555554
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCH
Q 001966 433 NLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK---KNKLQEAGKLVERMRREGITPDV 508 (989)
Q Consensus 433 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~~~ 508 (989)
. |+...+..++..+.+.|++++|..+++++++. .|+...++.++..++. .|+.+++..++++|.++++.|++
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33334455555555555555555555555544 3455555555544443 33555555555555554444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=203.31 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 001966 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD---SYTYVNLI 305 (989)
Q Consensus 229 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li 305 (989)
......+..+...|++++|...|+++.+.++ .+..++..+...+.+.|++++|..+++.+...+..++ ...+..++
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3444455567788999999999999998643 4566888888999999999999999999887543222 24577778
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDL----VIYNTLLKGFCKS 381 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~ 381 (989)
..|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 88888888888888888887653 345677888888888888888888888888876543321 2345566677778
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 382 GKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 382 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
|++++|...|+++.+.. +.+..++..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877654 33455677777778888888888888888776543322455667777777777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCK---AKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~ 538 (989)
+++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|++.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 7776653 44445566677777777777777777776654 4666666666666554 346777777777777665
Q ss_pred CCCCHH
Q 001966 539 LKPNIH 544 (989)
Q Consensus 539 ~~~~~~ 544 (989)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=205.74 Aligned_cols=390 Identities=11% Similarity=0.056 Sum_probs=242.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
.....|+.++|++++.+.... -+.+...+..+...+...|++++|..++++.++..+. +...+..++..+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 333444444444444444331 1223333444444444444444444444444443211 23333344444445555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 667 AFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLE 746 (989)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 746 (989)
|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++...+..++|++.++.+..
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 555555554431 11223 4444444555555555555555555442 33444444444444455555555555544332
Q ss_pred cCCCC-----hhhHHHHHHHH-----HHcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHH
Q 001966 747 KGLAS-----TLSFNTLIEFL-----CISNKL---QEAHQLLDAMLEE-QVNPNHD-TY----TTLINQYCKVQNMEKAK 807 (989)
Q Consensus 747 ~~~~~-----~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~ 807 (989)
.|.. ......++... ...+++ ++|++.++.+++. ...|+.. .+ ...+..+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1100 00111111111 222334 7888899988853 2233221 11 11123446779999999
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 808 QLFLEMQQRNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 808 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
..|+++.+.+.+ |+. ....++..|...|++++|+..|+++++ ..|.. .....+..++.+.|++++|.+.++
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~--~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY--HPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh--cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999886422 332 223357789999999999999999987 44433 345666778899999999999999
Q ss_pred HHHhCCCC-----------CC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHH
Q 001966 882 LIFDKRMP-----------IS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 882 ~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
++.+..++ |+ ..++..++..+...|++++|++.+++++...|. ++..+..++.++...|++++|+
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 99876431 23 346678889999999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 948 KVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 948 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+.++++++. .|| ...++..+..+...|++++|+++++++
T Consensus 414 ~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 414 NELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999764 786 678888899999999999999999875
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-16 Score=184.31 Aligned_cols=453 Identities=11% Similarity=0.042 Sum_probs=265.7
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 483 YFKKNKLQEAGKLVERMRREGITPDV--SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQ 560 (989)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 560 (989)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.+.. ..........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 447777777777777777643 332 233 6666666777777777777777621 1112333333355666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 561 TAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELL 640 (989)
Q Consensus 561 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 640 (989)
+|+++++++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7777777777664 334555666667777777777777777777664 4454444444444434555555777777777
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001966 641 EKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSV 720 (989)
Q Consensus 641 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (989)
+..+. +...+..+.....+.|-...|.++..+-.+. +.+. .+..|- .+.|.+..+.... ++...
T Consensus 197 ~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~--------~~~~a~~vr~a~~---~~~~~- 260 (822)
T PRK14574 197 RLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLE--------RDAAAEQVRMAVL---PTRSE- 260 (822)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHH--------HHHHHHHHhhccc---ccccc-
Confidence 66433 5555566666666667666666554432211 1111 111100 0111111111000 00000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEK---GLASTL----SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
-. +---.+.|+.-++.++.. .|+... +..-.+-++...|++.++++.|+.+...+.+-...+-..+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00 000134455555555542 221111 1112334556667777777777777765543333455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-C------------CCC
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRN-----LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-G------------IEP 855 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g------------~~p 855 (989)
+++|...+++++|+.+|+++.... .+++......|..+|...+++++|..+++++.+. . -+|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 777777777777777777765432 1222333456677777777777777777777661 0 122
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
|.. ....++..+...|++.+|++.++++....|. |..++..+++++...|...+|+..++.+....|+ +..+...++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHH
Confidence 333 2333456677788888888888888777655 8888888888888888888888888777777776 777788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHH
Q 001966 935 NDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 969 (989)
.++...|+|.+|.++.+.+.+. .|+......+.
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 8888888888888888777654 67655444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-16 Score=184.80 Aligned_cols=441 Identities=13% Similarity=0.055 Sum_probs=276.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001966 518 LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEA 597 (989)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 597 (989)
..+.|+++.|++.|++.++....-....+ .++..+...|+.++|+..+++..... .........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34667777777777777665322111222 55566666677777777766666111 11222233334466666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 598 ISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK 677 (989)
Q Consensus 598 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 677 (989)
+++|+++++.. +.+...+..++..+...++.++|++.+..+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 77777666652 223445555556666666666666666666554 333333433333333344444466666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001966 678 GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757 (989)
Q Consensus 678 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (989)
. +.+...+..+...+.+.|-...|.++..+-... +.+. .+.-+ ..+.|.+..+-..........
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l--------~~~~~a~~vr~a~~~~~~~~~---- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL--------ERDAAAEQVRMAVLPTRSETE---- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH--------HHHHHHHHHhhcccccccchh----
Confidence 3 224555555566666666666666555442211 1111 11000 011111111111100000000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEE-QVNPN-HDTY----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
+.--.+.|+.-++.++.. +..|. ...| .-.+-++...|++.++++.|+.+...+.+-...+-..++.+
T Consensus 263 ------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 263 ------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 001235666667776642 22232 2222 22344677899999999999999987755445578889999
Q ss_pred HHhcCCHhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCH---
Q 001966 832 YNRMGNRSEVFVVFEEMLGKG-----IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRM-----------PISA--- 892 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~--- 892 (989)
|...++.++|..+|+++.... ..++......|..++...+++++|..+++++.+..+ .||+
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997731 112333356788999999999999999999987433 2332
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 971 (989)
.....++..+.-.|++.+|++.+++++...|. |+.....+++++...|+..+|++.++.+.. +.|+ .......+..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 34556788899999999999999999999998 999999999999999999999999987754 4886 5667888888
Q ss_pred hhcCCChhhHHHHHhhh
Q 001966 972 ENSGVDLDESKDLMKQT 988 (989)
Q Consensus 972 ~~~~g~~~~a~~~~~~~ 988 (989)
+...|+|.+|+++++++
T Consensus 494 al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 494 AMALQEWHQMELLTDDV 510 (822)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 99999999999988664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-13 Score=137.89 Aligned_cols=469 Identities=13% Similarity=0.123 Sum_probs=337.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001966 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFIL 551 (989)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 551 (989)
+...|......-..++++..|..+|++.+... ..+...|...+..-.+...+..|..+++..+..-+..| ..|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 34445444455555677788888888887654 23566677777777788888888888888877522222 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 552 GYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE 631 (989)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 631 (989)
.--..|++..|.++|+.-.+. .|+...|.+.++.-.+...++.|..+++..+- +.|++.+|.-....-.++|.+.-
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 556678888888888887765 78888888888888888888888888888875 46888888888888888888888
Q ss_pred HHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC---hhHHHH
Q 001966 632 ALGIFLELLEK-G-LVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGD---LTEPFQ 704 (989)
Q Consensus 632 A~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~---~~~A~~ 704 (989)
+..++..+++. | -..+...+.+...--..+..++.|.-+|+-.++.= +.+ ...|..+...--+-|+ +++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 88888877764 1 11123334444444456778888999998888762 222 3334444433333444 344432
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHH-----HH---HHcCCHH
Q 001966 705 -----LFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST--LSFNTLIE-----FL---CISNKLQ 769 (989)
Q Consensus 705 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~-----~~---~~~g~~~ 769 (989)
-++.+.+.+ |.|..+|--.+..-...|+.+...++|+.++..-||-. ..|...+- ++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345555553 77899999999999999999999999999998877532 22222221 11 2467889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYT----TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
.+.++|+..++. ++....|+. ..+....++.+...|.+++-..+. .-|...++...+..-.+.++++.+..+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999998873 333444444 344445678899999999988775 6788899999999999999999999999
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
++.++ ..|.+. +|...+..-...|+.+.|..+|+-++.... ......|...++.-...|.++.|..+|+.+++...
T Consensus 461 Ekfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 461 EKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999 788766 888888888889999999999999997632 22345688888888999999999999999998863
Q ss_pred ccCHHhHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHh
Q 001966 924 RLGFASCRTVANDFL-----REG-----------VMDYAAKVLECMAS 955 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 955 (989)
+..+|...+..-. ..| +...|+++|+++..
T Consensus 539 --h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 539 --HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred --cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5668877776544 444 56678888888753
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-15 Score=159.60 Aligned_cols=253 Identities=17% Similarity=0.196 Sum_probs=133.5
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001966 249 RVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKG 328 (989)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 328 (989)
.++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-+....+...|+.++.+-...++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556667778888888888888888888887777 7777777766667777777777777777766555
Q ss_pred CCcCHHhHHHHHHHHHHcCCHHHHHHHHHH-HHH-------CCCCCCHHHH---------------HHHHHHHHhcCChH
Q 001966 329 LKLDTVAYYALIDGFVKQGDVEEAFRVKDE-LVA-------SGNQIDLVIY---------------NTLLKGFCKSGKME 385 (989)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~-------~g~~~~~~~~---------------~~li~~~~~~g~~~ 385 (989)
.|...+|+.|...|...||+.. .+..++ +.. .|.- ....| ...+....-.|-.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5667778888888888887655 222221 111 1110 00000 01111111222223
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
.+++++..+.... ..+ +....++-+... .....++........-.|+..+|..+++.-...|+.+.|..++.+|.
T Consensus 157 qllkll~~~Pvsa-~~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSA-WNA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCccc-ccc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 3333332221110 000 000011111111 11122222222211113566666666666666666666666666666
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 001966 466 TRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKR 523 (989)
Q Consensus 466 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 523 (989)
+.|++-+...|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666555555444443 55556666666666666666666666655555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-13 Score=136.31 Aligned_cols=452 Identities=13% Similarity=0.075 Sum_probs=349.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVD 586 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 586 (989)
+...|.....--..++++..|.++|+..+.-. ..+...|...+.+-.+...+..|..+++..+..- +.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 33444444444446788999999999999865 3366678888888899999999999999998753 222345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
+--..|++..|.++|+...+- .|+...|.+.|+.-.+....+.|..++...+-- .|++.+|-.....-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 667789999999999999874 899999999999999999999999999998764 5899999888888889999999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH---HHH-
Q 001966 667 AFQLYEEMCEK-GV-EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD--GSVYNALLSGCCKEEKLE---QAL- 738 (989)
Q Consensus 667 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~---~A~- 738 (989)
|..+|...++. |- ..+...+.++..--.++..++.|..+|+-.+.. +|.+ ...|......--+-|+.. +++
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998865 21 112233444444444567788899999888875 4544 455665555555566643 332
Q ss_pred ----HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HHhcCCHH
Q 001966 739 ----ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH--DTYTTLINQ--------YCKVQNME 804 (989)
Q Consensus 739 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~ 804 (989)
--|+..+..+|.+-.+|.-.++.....|+.++..++|++.+.. ++|-. ..|...|-. -....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3577788889988899999999999999999999999999975 44422 223222211 13568899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYR----SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
.+.++|+..++. ++....|+. ..+.-..++.++..|.+++-.++. ..|.+.++...+..-.+.+++|...++|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999983 444444544 444445678899999999998886 8999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG--FASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
++.++-+|. +..+|...+..-...|+.+.|..+|+-+++...- | ...|-..++.-...|.++.|..+|+++++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 999999877 8999999999999999999999999999877533 3 234677888888999999999999999875
Q ss_pred cccchhHHHHHhhhh
Q 001966 959 VSNSISLADIVKGEN 973 (989)
Q Consensus 959 ~p~~~~~~~l~~~~~ 973 (989)
.+-...|+..+....
T Consensus 537 t~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 537 TQHVKVWISFAKFEA 551 (677)
T ss_pred cccchHHHhHHHHhc
Confidence 555668877777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-14 Score=143.16 Aligned_cols=475 Identities=14% Similarity=0.114 Sum_probs=281.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHH
Q 001966 444 IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYT-NLVSTYFKKNKLQEAGKLVERMRREGITPD----VSCFNSLIIGL 518 (989)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~ 518 (989)
|...|.......+|+..++-+++...-|+.-... .+.+.+.+...+.+|++.++..+..-+..+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3444555555566666666666555555543221 233455666677777777766655422212 12333344456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHhHHHHHH
Q 001966 519 CKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP------------NDVIYTSIVD 586 (989)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~ 586 (989)
.+.|+++.|+.-|+...+. .|+..+-..++.++...|+-++..+.|.+|+.....+ +....+.-+.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 6777888888777777664 4666666666666667777777777777776532222 2222222111
Q ss_pred -----HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 001966 587 -----GYCKEG--NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 587 -----~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 659 (989)
-.-+.. +.++++-.-.+++.--+.|+... | .+-.++.++.-+...+..+ .-..-...+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~d--lei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAID--LEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhh--hhhhHHHHHH
Confidence 111111 11111111111211111111110 0 0111111111110000000 0011123467
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK--AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
+.|+++.|+++++-..++.-......-+.|-..+.- -.++..|.++-+.....+ .-+......-.......|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 888899888888877765333233333333322222 336777777777766543 33444444444444567888999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
.+.|++.+.....-..++..++-.+...|++++|++.|-++..- +..+..+...+.+.|--..+...|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99999988876655666777777788888999998888877532 1235666777788888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK 896 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 896 (989)
++.|+.+...|+..|.+.|+...|...+-.--. .-|. ..+..-|+..|....-+++|+.+|+++.- +.|+..-|.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 455677888888888888888888887666555 4554 44666677777777888889999888764 456777777
Q ss_pred HHHH-HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 897 AIIK-ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 897 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.++. ++.+.|+++.|..+|+..-.+-|+ |...+.-|..++...|-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 6654 455678999999999888887777 77777777777666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-13 Score=146.76 Aligned_cols=266 Identities=16% Similarity=0.158 Sum_probs=158.3
Q ss_pred CCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 001966 183 GCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN 262 (989)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 262 (989)
..|+.|+..+|..++..|+..|+.+.|- +|.-|.- +..+-+...++.++.+..+.++.+.+. .|-
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~---ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI---KSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc---ccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3467777777777777777777777776 5555543 125666667777777777777776665 366
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHHhHHHHHH
Q 001966 263 VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIG-KGLKLDTVAYYALID 341 (989)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~ 341 (989)
..||..+..+|.+.||..- ++..++ -.-.++..+...|....-..++..+.. .+.-||.. .++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 7777777777777777665 222222 111223333444444444444433221 12223332 2333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 342 GFVKQGDVEEAFRVKDELVASG-NQIDLVIYNTLLKGFCKSG-KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
...-.|-++.+.+++..+.... ..|..+ .++-..... .+++-..+-+...+ .|++.+|..++.+-.-.|++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence 3444555666666655543221 111111 133222222 23332222222222 47888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNK 488 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 488 (989)
+.|..++.+|.++|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+.....+|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888887777777655 77777888888888888888888888777666666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-14 Score=141.86 Aligned_cols=359 Identities=13% Similarity=0.082 Sum_probs=246.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 001966 609 ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLT--Y 686 (989)
Q Consensus 609 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 686 (989)
...|...+-...-.+-+.|....|++.|...+..- +..|.+.+....-..+.+.+.. ... |...|... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHH
Confidence 34455544445555667788888888888777652 2234443333222233332222 221 12212111 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHH
Q 001966 687 NVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLC 763 (989)
Q Consensus 687 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~ 763 (989)
--+..++......+++++-.+.....|++.+...-+....+.-...++++|+..|+++.+..| .+..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 123455666667888888888888888877777666666667778889999999999998877 444455444322
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 842 (989)
+. +-.+ +.++-+-...--+--+.|..++++-|.-.++.++|+.+|++.++. .|. ..+|..++.-|....+...|+
T Consensus 309 ~~-~~sk-Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KN-DKSK-LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred Hh-hhHH-HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 22 1111 112221111101123456777888888888899999999998884 454 557888888899999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+.|+.+++ +.| |...|+.|+++|.-.+...-|+-+|+++.+..|. |+..|..|+.+|.+.++.++|++.|..++..
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999998 888 4558999999999999999999999999988765 8889999999999999999999999998887
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-Cccc-chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASF----G-WVSN-SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
+.. +..++..||..|.+.++.++|.+.+++-++. | ..|+ ..+..-|+....+.+++++|.....
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 744 6788999999999999999998888886652 2 2332 3344557777788888888776544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-13 Score=135.82 Aligned_cols=321 Identities=17% Similarity=0.233 Sum_probs=211.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHH--HcCCChH-HHHHHHHHHHhccCCCCCcCHHHHHHHH
Q 001966 159 NMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDL--LKGKKME-LFWKVWAKMNKMNAGGFEFDVYSYTTVI 235 (989)
Q Consensus 159 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (989)
+.|++. ...|.+.++.-+|..|...|...+...--.|++.- ..+.+.. .-|+.|-.|.. .-.....+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~----~~E~S~~sW---- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRN----FGEDSTSSW---- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccc----ccccccccc----
Confidence 344443 45788999999999999888887776666665543 3333332 22555555554 222223333
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 236 DAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLG 315 (989)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 315 (989)
+.|.+.+ ++-+... .+..+|.++|.|+|+--..+.|.+++++-.......+..+||.+|.+-. +.
T Consensus 191 ----K~G~vAd---L~~E~~P----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLP----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred ----ccccHHH---HHHhhcC----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 3444433 3333332 3667889999999998889999999998888777788888988887543 23
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHH
Q 001966 316 DVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEA----FRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEK-AREV 390 (989)
Q Consensus 316 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~ 390 (989)
...++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 3377888888888888888888888888888877654 4566777888888888888888888888776533 4444
Q ss_pred HHHHHH----CCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCcC---HhhHHHHHHHHHhcCCHH
Q 001966 391 LNEIIR----MGIEP----NSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN----LVPS---VFTYGVIIDGLCHCGDLR 455 (989)
Q Consensus 391 ~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~ 455 (989)
+.++.. +.++| |..-+...++.|.+..+.+-|.++..-+.... +.|+ .+-|..+....|+....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 22222 33455666777777777777777665554321 2222 234556667777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 456 QINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREG 503 (989)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 503 (989)
.....|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777777766555666666666666666666666666666665544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-13 Score=133.63 Aligned_cols=359 Identities=17% Similarity=0.233 Sum_probs=200.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 001966 401 PNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLV 480 (989)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 480 (989)
....||..||.++|+-...+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 34455666666666666666666666666555555566666665544322 11255666666666666666666666
Q ss_pred HHHHccCCHHHH----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCC---C-CHHHHH
Q 001966 481 STYFKKNKLQEA----GKLVERMRREGITPDVSCFNSLIIGLCKAKRMDE-ARIYLVEMLR----RGLK---P-NIHSFR 547 (989)
Q Consensus 481 ~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~---~-~~~~~~ 547 (989)
.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |..++.+.+. +.++ | |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 666666655443 4455666667777777777777776666655433 3334444332 1122 2 334466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 548 AFILGYCMAGEMQTAGRFFNEMLNS----GLVPND---VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLI 620 (989)
Q Consensus 548 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 620 (989)
..+..|....+.+-|.++..-+... -+.|+. .-|..+....|+....+.-...|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 6666777777777777766554421 112221 235566777777778888888888887766667777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCh
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKA-GDL 699 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 699 (989)
++..-.+.++-.-+++..++..|..-+... -++++..+......|+...-..+-....+. -++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 777777777777777776666543322221 122333333333333323222222222111 122
Q ss_pred hHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhHH---HHHHHHHHcCCHHHHHH
Q 001966 700 TEPF-QLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSFN---TLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 700 ~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~l~~~~~~~g~~~~A~~ 773 (989)
.++. ..-.++.+..+ .....+..+-.+.+.|..++|.+++....+.+- |.....+ .+++.-...+....|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 2222 12233344333 344555666667778888888888887765543 3333344 44445556667777777
Q ss_pred HHHHHHHC
Q 001966 774 LLDAMLEE 781 (989)
Q Consensus 774 ~~~~~~~~ 781 (989)
.++-+...
T Consensus 583 ~lQ~a~~~ 590 (625)
T KOG4422|consen 583 VLQLASAF 590 (625)
T ss_pred HHHHHHHc
Confidence 77777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-11 Score=129.79 Aligned_cols=250 Identities=11% Similarity=0.134 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Q 001966 157 VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVID 236 (989)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (989)
+-...+.+|+.+|.+++++-...+. |..|+. -.+|..+.+ -..|.+.++...+.+ . .+...-.+.++.
T Consensus 483 vp~KVi~cfAE~Gqf~KiilY~kKv---GyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q----~-~~~~~die~I~D 550 (1666)
T KOG0985|consen 483 VPAKVIQCFAETGQFKKIILYAKKV---GYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQ----D-EEPLADIEQIVD 550 (1666)
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHc---CCCccH---HHHHHHHHc-cChhHHHHHHHHhhc----c-CCCcccHHHHHH
Confidence 3456788999999999998877666 888874 455666666 568888888777766 2 223444667777
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 237 AYFKVRNAEEGKRVFSEMGEKGCRPNV-ATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLG 315 (989)
Q Consensus 237 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 315 (989)
.+......+.+..++-.+++.. .|+. ..-+.++..-.. .|-.+-+.....+.. ..+-+..+...|.+.|-+.
T Consensus 551 lFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~q 623 (1666)
T KOG0985|consen 551 LFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQ 623 (1666)
T ss_pred HHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHH
Confidence 7888888888888877777642 2332 222222222111 112222222222111 2223566667777778777
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001966 316 DVRLVLSELIGKGLKLDTVAYYAL-----IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREV 390 (989)
Q Consensus 316 ~a~~~~~~m~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (989)
+|++.+.++..- . -.++.+.+ .-.|+..-.++++.+.++.|...++..|..+.-.+..-|+..=-.+..+++
T Consensus 624 raLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~l 700 (1666)
T KOG0985|consen 624 RALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIEL 700 (1666)
T ss_pred HHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 777776665431 1 01111111 123444456777777888887777776776666666666665555566666
Q ss_pred HHHHHHC-----------CCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 391 LNEIIRM-----------GIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 391 ~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (989)
|+....- ++..|+...-.-|.+.|+.|++.+..++.++
T Consensus 701 FE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 701 FESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 6655321 2344555555667777888887777665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-14 Score=146.00 Aligned_cols=499 Identities=15% Similarity=0.114 Sum_probs=324.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 001966 437 SVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLII 516 (989)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 516 (989)
+..-+..+++-+....++.-|.-+-++....+..|+.. -.+..+++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44556666666666677777777777776665444443 34567777788888887777654321 236667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 001966 517 GLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596 (989)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 596 (989)
++.+..+++.|..++..-.. .-+...|-.-= + ...-..+.+. ++. ++......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 78888888888877763210 00111100000 0 0000000000 000 001111111122234444556667
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHH-HhcCCHHHHHHHH
Q 001966 597 AISKFRCMLARGILPEVQTYSVL---INGLSKKLELREALGIFLELLEK-GLVPDVDTYNSLITSF-CKICDVDKAFQLY 671 (989)
Q Consensus 597 A~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~-~~~g~~~~A~~~~ 671 (989)
|...|.+.+.. |...+..+ +....-. ..+-..++..+--. -...+......+.... ++.-+ +.....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 77666666543 33333322 2211110 11112222110000 0001111111111111 01000 0000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS 751 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 751 (989)
.+..-.+...+........+-+...+++.+..++++...+.. |+....+..-|..+...|+..+-..+-.++++..|..
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 001111334466666677777888899999999999999874 7777777777788889999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
..+|.+++..|.-.|++++|.+.|.+....... -...|...++.|.-.|..|.|+..+....+. ++-...-+.-++.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 999999999999999999999999998854222 2357999999999999999999999888773 22233345556677
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHc
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK----RMP--ISAEAYKAIIKALCK 904 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~ 904 (989)
|.+.++.+-|..+|.++.. +.|.+. ..+.++-.....+.+.+|..+|+..++. +.+ .-..++..|+.+|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 8889999999999999998 999666 7888888888899999999999998842 111 134568999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
++++++|+..+++++...|+ ++.++..+|-+|...|+.+.|...|.+++ .+.||..+.
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~ 525 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFI 525 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHH
Confidence 99999999999999999998 99999999999999999999999999985 468986443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-14 Score=139.78 Aligned_cols=480 Identities=12% Similarity=0.103 Sum_probs=316.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH
Q 001966 475 IYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCF-NSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS----FRAF 549 (989)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l 549 (989)
+...|..-|.......+|+..++-+.+..+-|+.-.. ..+...+.+..++.+|+++++-.+..-+..+..+ .+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444556677777888999999888877666765432 2345667788899999999988887633223222 3333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------------HHHH
Q 001966 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEV------------QTYS 617 (989)
Q Consensus 550 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~ 617 (989)
.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+.-...||. ...+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44567889999999999987765 577777666676777788999999999998875322222 2222
Q ss_pred HHHH-----HHHhc--CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 618 VLIN-----GLSKK--LELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLI 690 (989)
Q Consensus 618 ~li~-----~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 690 (989)
.-|. ..-+. .+.++++-.-..++.--+.|+-.. + .+-+++.++.-.-..+..+.. -.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la~dle--i~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELAIDLE--INKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhhhhhh--hhHH
Confidence 2111 11111 011122211111211111111100 0 111122222111110010111 1123
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC-K-EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
.-|.+.|+++.|+++++-+.+.+...-...-+.|-..+. + ..++.+|..+-+..+....-+..+...-+..-...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 347889999999999998887654433333333333322 2 34677888888888776655555555555555678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
++|.+.|++.+.....-....|+ +.-.+-..|+.++|++.|-++..- +..+..+...++..|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998653222223333 344567889999999999887652 3445678888999999999999999999998
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH
Q 001966 849 LGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF 927 (989)
Q Consensus 849 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 927 (989)
.. +-|+.. ....|+..|-+.|+...|.+.+-...+.- +-+.++..+|+.-|....-+++|+.+|+++.-..| +.
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryf-p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp--~~ 659 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF-PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP--NQ 659 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc-CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc--cH
Confidence 87 777555 78889999999999999999876666543 44899999999999999999999999999877664 45
Q ss_pred HhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCCh
Q 001966 928 ASC-RTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDL 978 (989)
Q Consensus 928 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 978 (989)
.-| ..++.++.+.|+|+.|..+|+...++ ++.|.+.+--|.+....-|..
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 555 56778899999999999999998764 444666666666666555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=164.60 Aligned_cols=282 Identities=15% Similarity=0.119 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 663 DVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--PLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
+..+|...|..+.+. +.....+...+..+|...+++++|.++|+.+.+... --+..+|.+.+.-+- +.-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 456777777774443 233345556667777777788888888877776420 124556666554432 22222233
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK 819 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 819 (989)
-+.++...+..+.+|..++.+|.-+++.+.|++.|++.+.. .| ...+|+.+++-+.....+|+|...|+..+. +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 44555666677777777777777777777777777777753 44 556777777777777777777777777765 34
Q ss_pred CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 820 PA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 820 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
|. ..+|..++..|.+.++++.|.-.|+++++ ++|.+. ....++..+.+.|+.|+|+++++++...++. |+-.-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 43 34677777777777777777777777777 777655 4444567777777777777777777777665 6666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.+..+...+++++|+..++++.+.-|+ +..++..+|.+|.+.|+.+.|..-|-.|.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677777777777777777777777777 7777777777777777777777777776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-13 Score=133.01 Aligned_cols=365 Identities=14% Similarity=0.104 Sum_probs=267.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-H
Q 001966 573 GLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT-Y 651 (989)
Q Consensus 573 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~ 651 (989)
+...|...+-.....+-+.|....|++.|...+.. .+-.-..|..|.... .+.+.+. .....+...+... -
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHhcCcccchHHHH
Confidence 34556666666666777889999999999888764 222334444443322 2222222 1211111101111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHH
Q 001966 652 NSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVP---LDGSVYNALLSGC 728 (989)
Q Consensus 652 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~ 728 (989)
--+..++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+.+ | .|..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH-
Confidence 12344566666888888888888888888777666666677778889999999999999873 2 255666655432
Q ss_pred HhcCCHHHHHHHH-HHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 729 CKEEKLEQALELF-RDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAK 807 (989)
Q Consensus 729 ~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 807 (989)
+..+ ..+..+ ......+.-.+.+...++..|.-.++.++|..+|++.++.+.. ....|+.+++-|...++...|+
T Consensus 309 -~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2221 222222 2333334456778888899999999999999999999986422 5578999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.++..++-+ +-|...|..|+.+|.-.+...-|+-+|+++.+ ..|++ ..|..|+++|.+.++.++|++.|+.++..
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999843 45677999999999999999999999999999 88855 49999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----Ccc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG-----FRL-GFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+-. +..++..|+..|.+.++.++|...|++-++.. ..+ ...+..-|+.-+.+.+++++|.........
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 644 77899999999999999999999999987622 111 234455688999999999999888776653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-12 Score=137.92 Aligned_cols=306 Identities=14% Similarity=0.052 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001966 630 REALGIFLELLEKGL-VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDE 708 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 708 (989)
.++++.+++.++.+. .|++..|-++ -|+..++++.|.+...+.++.+-..+...|..|+-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 456666666666543 3333333333 3556667777777777777765555677777777777777777777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC
Q 001966 709 MTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVNPN 786 (989)
Q Consensus 709 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 786 (989)
.... ++.|......-++.-..-++.++++.....++..--..... ...++-....+....+.-. .....
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCccccccc
Confidence 6554 23333333333333344566666666655554321000000 0011111111111111100 00111
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 787 HDTYTTLINQYCKVQN---MEKAKQLFLEMQQRNLKP--A------TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 787 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
..++..+.......+. .+.. +......| + ...|...+..+.+.++.++|...+.++.. +.|
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 1222222221111110 1111 11111122 2 23455666777888888888888888777 777
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCccCHHhHHH
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR--LLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~ 932 (989)
-.. .|+..+..+...|.+++|.+.|..++..+|. +......++.++.+.|+..-|.. ++..+++.+|. ++.+|+.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~ 759 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYY 759 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 555 6666778888888999999999888888766 77888888888888888777777 88888888888 8899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 001966 933 VANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
||.++.+.|+.++|.+.|.-+.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 999999999999998888887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-12 Score=137.97 Aligned_cols=477 Identities=17% Similarity=0.088 Sum_probs=300.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 485 KKNKLQEAGKLVERMRREGITPDVSCFNSLIIG---LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
+.+..++++.-+......+...+..++-.+-.+ |...++.+++ ++-...+.-.-|. .+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~R--------------e~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPR--------------ENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhcccc--------------ccHHH
Confidence 455666777777766666666565555544433 2334555555 2222222222222 12222
Q ss_pred HHH----HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 562 AGR----FFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFL 637 (989)
Q Consensus 562 A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 637 (989)
+.- .+.++....+..|..+|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 211 1222222334556777777888888888888888888887653 33456678888888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHH-HH-HhcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CChh
Q 001966 638 ELLEKGLVPDVDTYNSLIT-SF-CKICDVDKAFQLYEEMCEK--GV--EPNTLTYNVLIDGFCKA-----------GDLT 700 (989)
Q Consensus 638 ~~~~~~~~p~~~~~~~li~-~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~ 700 (989)
+.......|+..+--.++. .| -+.+.+++++++-.++++. +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7766544444333333333 23 2456777777777666652 11 11233344443334321 1235
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
++++.+++..+.+ +.|+.+...+.--|...++.+.|....++.++.+. .+...|..|+-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 6777888887765 44444444455566777889999999999998866 888888888888889999999999988877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHH
Q 001966 780 EEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR---------------------N-------LKPATITYRSLLNG 831 (989)
Q Consensus 780 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~p~~~~~~~l~~~ 831 (989)
+. ...|......-++.-..-++.++|+.+...+... | ......++..+..-
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 43 1112222222233333456677776655544321 0 00011122222211
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF--------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
....+ ..+..-.. +......|+.. .|...+..+.+.++.++|...+.++....+. ....|+..+..+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHH
Confidence 11100 00000000 11111223222 2444567888899999999898888876544 7788999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHH--HHHHHHhCCCcc-cchhHHHHHhhhhcCCChhh
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAK--VLECMASFGWVS-NSISLADIVKGENSGVDLDE 980 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 980 (989)
..|+.++|.+.|..++..+|+ ++.+...+|.++.+.|+..-|.. ++..+++. .| +++.|+.++....+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHH
Confidence 999999999999999999998 99999999999999999888877 89888764 78 59999999999999999999
Q ss_pred HHHHHhh
Q 001966 981 SKDLMKQ 987 (989)
Q Consensus 981 a~~~~~~ 987 (989)
|-+.|..
T Consensus 773 Aaecf~a 779 (799)
T KOG4162|consen 773 AAECFQA 779 (799)
T ss_pred HHHHHHH
Confidence 9988863
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-13 Score=139.75 Aligned_cols=221 Identities=13% Similarity=0.171 Sum_probs=180.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|+.-.|..-|+..++.... +...|.-+..+|....+.++....|.++...+|.++.+|..-++.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3468888999999999887533 333477788889999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 774 LLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 774 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
-|++.++. .| +...|..+.-+..+.++++++...|++..++ ++..+..|+..+..+...++++.|.+.|+..++
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999875 34 4566777777777889999999999999885 566678999999999999999999999999998
Q ss_pred CCCCHH-------HHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 853 IEPDNF-------TYY--VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 853 ~~p~~~-------~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.|+.. .+. .++..- -.+++..|++++.++++.+|+ ...+|..|+....+.|+.++|+++|++.....
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777621 111 111111 238899999999999998876 77889999999999999999999999977654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-17 Score=168.39 Aligned_cols=260 Identities=15% Similarity=0.224 Sum_probs=104.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRG-VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN 766 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 766 (989)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|+..+++++..++.+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45667777888888888886554442 234555566666677778888888888888887776666666666666 6788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 767 KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN-LKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 767 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
++++|..++++..+. .++...+..++..+...++++++.++++++.... .+++...|..++..+.+.|+.++|+..+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888776654 2455666777777888888888888888876532 3456677888888888888888888888
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+++++ ..|++. ....+++.+...|+.+++.++++...+.. +.++..|..++.++...|+.++|+..++++.+..|+
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 88888 788655 66677888888888888888777776654 236667788888888888888888888888888877
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 925 LGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 925 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|+.....+++++...|+.++|.+++.++.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 88888888888888888888888887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-14 Score=140.98 Aligned_cols=418 Identities=17% Similarity=0.103 Sum_probs=243.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 001966 509 SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN-IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPND-VIYTSIVD 586 (989)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 586 (989)
..+-+..+-|.+.|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+.-.+.++. .|+- ..+.--..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34555667777888888888888888875 456 777888888888888888888887777765 3332 34555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHhhHHHHHHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGI--------FLELLEKGLVPDVDTYNSLITSF 658 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~p~~~~~~~li~~~ 658 (989)
++-..|++++|+.-. |-.++..++....-.--+.++ .++-...+-+|...+ .+.|..|
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~sy 257 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASY 257 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHH
Confidence 666667777665322 222222222222211122222 222222111222111 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC---C---CCCH------HHHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKA-GDLTEPFQLFDEMTKRG---V---PLDG------SVYNALL 725 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~---~---~~~~------~~~~~l~ 725 (989)
...=..+ ....+...+-..|...-..+-..+... ..+..|...+.+-...- . ..|. .+...-.
T Consensus 258 f~sF~~~----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 258 FGSFHAD----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred Hhhcccc----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 1110000 000000000011111111111111110 12333333333221100 0 0111 1111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..+.-.|+.-.|.+-|+..+...+.+...|..++.+|....+.++..+.|.+..+.... ++.+|..-..++.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 22334677888888888888887755555777777888888888888888888765322 55667777777777788888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
|+.=|++.+. +.|+ ...|..+.-+..+.++++++...|++.++ --|+ .+.|+..+.++..++++++|.+.|+.+
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 8888888877 4444 55777777777788888888888888887 4454 347777778888888888888888888
Q ss_pred HhCCCC-----CCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 884 FDKRMP-----ISAE--AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 884 ~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++..+. .++. +...++. +.=.+++.+|+.++.++++.+|+ ...++..|+..-.+.|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876433 1222 2222221 11237888888888888888877 777888888888888888888888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-15 Score=155.52 Aligned_cols=275 Identities=16% Similarity=0.098 Sum_probs=225.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
+..+|+..|..+... +.....+...+..+|...+++++|.++|+.+.+..| .+...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457889999885544 455667778889999999999999999999998877 455566665544322 222333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 775 L-DAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 775 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
+ +.+++. -+-.+.+|.+++++|.-+++.+.|++.|++..+ +.| ...+|..++.-+.....+|.|...|+.++.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 3 333333 233678999999999999999999999999988 566 567888888888889999999999999988
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
+.|+.. +|+-++-.|.++++++.|+-.|+++++.+|. +..+...++..+.+.|+.++|+.+++++...+|+ ++..-+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 888776 8888999999999999999999999998877 8888889999999999999999999999999988 999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
..+.++...+++++|.+.++++++ +.|+ ...++.++..+.+.|+.+.|..-|.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999999999976 4886 5667888999999999998887653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-09 Score=113.59 Aligned_cols=565 Identities=13% Similarity=0.127 Sum_probs=292.0
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 001966 334 VAYYALIDGFVKQGDVEEAFRVKDELVAS-GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQG 412 (989)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 412 (989)
..|......+.++|++......|+..+.. -+.-....|...+......|-.+-+..++++.++. ++..-+--|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34445555666777777777777777654 11112346777777667777778888888888754 33345666777
Q ss_pred HHhcCChhHHHHHHHHHHhCC------CCcCHhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCH--hhHHHHHH
Q 001966 413 YCRMRKMVSAFELLDEMKKKN------LVPSVFTYGVIIDGLCHCGDLR---QINAILGEMITRGLKPNA--IIYTNLVS 481 (989)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~li~ 481 (989)
+++.+++++|.+.+....... .+.+...|.-+-+...+..+.- ....+++.++.. -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 788888888888777765431 1222233333333333322211 112222222221 2221 23445555
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 482 TYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
.|.+.|.+++|..+|++.... ...+.-|..+.+.|+.-....-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 555555555555555544432 112222333333333211111111000 0000000000 0001111
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 562 AGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLE 641 (989)
Q Consensus 562 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 641 (989)
...-|+.+.+... -+++...-+.-+.++..|..-+. +..|+..+-...+.+++.
T Consensus 322 ~~a~~e~lm~rr~------------------------~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 322 HMARFESLMNRRP------------------------LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHHHHhccc------------------------hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH
Confidence 2222222221110 00000000001223334433322 223444555555555544
Q ss_pred CCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 001966 642 KGLVPD------VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN---TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR 712 (989)
Q Consensus 642 ~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 712 (989)
. +.|. ...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.+..+++.|+++++.....
T Consensus 376 ~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 376 T-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred c-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 3 1111 22345555555666666666666666554422211 223444444444455556666655554321
Q ss_pred -----------CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001966 713 -----------GVP------LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLL 775 (989)
Q Consensus 713 -----------~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 775 (989)
+.+ -+...|...++.....|-++....+|+.+++..+..+......+..+....-++++.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 011 134456666777777788888888888888888766666666666677777788888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 776 DAMLEEQVNPNH-DTYTTLINQYCK---VQNMEKAKQLFLEMQQRNLKPATIT--YRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 776 ~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
++-+..-.-|++ ..|+..+.-+.+ ..+.+.|..+|++.++ |++|...- |...+..-.+.|....|+.+|+++.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 877654333443 456655554433 2468889999998888 66776543 3333333445688888888888876
Q ss_pred hCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHC-CC
Q 001966 850 GKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE---AYKAIIKALCKREEYSEALRLLNEMGES-GF 923 (989)
Q Consensus 850 ~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 923 (989)
. ++.+... .|+..+.-....=-......+|+++++.= |+.. .....++.-++.|+.+.|..+|.-..+. .|
T Consensus 614 ~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 614 S-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 5 2444333 45555422222222334556777777652 2332 3445566778888999998888776554 44
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 924 RLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
..+...|...=..-.+.|+-+--.+++
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777777777788888844433333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-13 Score=152.14 Aligned_cols=290 Identities=14% Similarity=0.036 Sum_probs=202.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD-GSVYNALLSGCCKEEKLEQ 736 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 736 (989)
...|+++.|.+.+.+..+. .|+. ..+-.....+.+.|+.+.|.+++.++.+.. +.+ ..........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence 4678899998888877665 3443 334444667778889999999988887652 222 2344445777788888999
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYT-TLIN---QYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~ 812 (989)
|...++.+.+..|.+..+...++..+...|++++|.+.+..+.+.+.. +...+. .... .+...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998888888888888888888999999999888888877544 332231 1112 22333444445556666
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 813 MQQRNL---KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY---YVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 813 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.+... +.+...+..++..+...|+.++|.+.+++.++ ..||+... ..........++.+++++.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 666321 12667788888888888888888888888888 56666521 22223334457788888888888877
Q ss_pred CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 887 RMPISA--EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 887 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+. ++ .....+++.+.+.|++++|.+.|+++......|++..+..++..+.+.|+.++|.+++++.+.
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654 66 677788888888888888888888533322235666677888888888888888888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-13 Score=150.46 Aligned_cols=289 Identities=12% Similarity=0.009 Sum_probs=189.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHcCCHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST-LSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 772 (989)
...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.++.+..+.+. ......+..+...|++++|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34678888888887776642 22334444556667777888888888888777665332 34444577777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHhHHHHHHHHHH
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYR---SLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
..++++.+..+ -+...+..+...+...|++++|.+++..+.+.+..+...... ....+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877642 255667777788888888888888888888765332221111 11122233334444455666666
Q ss_pred hCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 850 GKGIEP-----DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA-YKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 850 ~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
+ ..| +...+..++..+...|++++|.+.+++.++..++..... ...........++.+.+.+.+++..+..|
T Consensus 253 ~--~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 K--NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred H--HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5 334 445666777788888888888888888887654422111 11122223345777888888888887777
Q ss_pred ccCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 924 RLGF--ASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 924 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+ ++ .....+|+++.+.|+|++|.+.|+++......||+..+.+++..+.+.|+.++|.+++++
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 77 667788888888888888888888544444577777777888888888888888877765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-09 Score=111.32 Aligned_cols=565 Identities=11% Similarity=0.125 Sum_probs=306.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 302 VNLIYGFSAAKRLGDVRLVLSELIGK-GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCK 380 (989)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 380 (989)
...+.-+.++|+...-...|+..... -+.-....|.-.+......|-.+-+..++++.++. +...-+--|..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 33333344444444444444444332 11122233444444444445555555555555543 22223344444555
Q ss_pred cCChHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCcC--HhhHHHHHHHHH
Q 001966 381 SGKMEKAREVLNEIIRMG------IEPNSRTYTSLIQGYCRMRKM---VSAFELLDEMKKKNLVPS--VFTYGVIIDGLC 449 (989)
Q Consensus 381 ~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 449 (989)
.++.++|.+.+...+... -+.+...|..+-+...+.-+. -....+++.+..+ -+| ...|++|.+-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 555555555555443210 123333444444433332221 1222333333332 223 345667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 001966 450 HCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR--REGITPDVSCFNSLIIGLCKAKRMDEA 527 (989)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A 527 (989)
+.|.++.|..+|++.+.. ...+.-|+.+.+.|..-....-+..+ + +. +.|-.-+... ++-.
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~d-------------l~~~ 322 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVD-------------LELH 322 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhh-------------HHHH
Confidence 777777777777776654 22333344444554432211111110 0 10 1111111111 1111
Q ss_pred HHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHh
Q 001966 528 RIYLVEMLRRG-----------LKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN------DVIYTSIVDGYCK 590 (989)
Q Consensus 528 ~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 590 (989)
+.-|+.+.... -+-++..|..-+. +..|+..+-...+.++... +.|. ...|..+...|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 22222222211 1123444444333 2346666666777766643 1111 1357777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPE---VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKA 667 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 667 (989)
.|+++.|..+|++..+-..+-- ..+|..-...-.++.+++.|+++++..... |.... ..+...+..-++
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQA 471 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHH
Confidence 8888888888888776533221 235555566666777777787777666543 22111 122232322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001966 668 FQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK 747 (989)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 747 (989)
. + ..+...|..+++.--..|-++....+++.+....+. ++.........+....-++++.+.|++-+..
T Consensus 472 r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 472 R-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred H-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1 1 114556777777777788899999999999886543 3333333334445566688999998888776
Q ss_pred CC-CCh-hhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 748 GL-AST-LSFNTLIEFLCI---SNKLQEAHQLLDAMLEEQVNPNHD--TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 748 ~~-~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
-+ |.. ..|+..+.-+.+ .-.++.|..+|++.++ |++|... .|......--+.|-...|+.++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 55 443 345554443332 3478999999999998 5566442 2333333334568888999999997653 444
Q ss_pred CH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 001966 821 AT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFT---YYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEA 894 (989)
Q Consensus 821 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 894 (989)
.. ..|+..+.-....=-+.....+|+++++ .-|+... ....++.-++.|..+.|..+|....+. +|..+.+.
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 42 3566666544433345667889999999 6787663 334567778899999999999888776 67778888
Q ss_pred HHHHHHHHHccCCHHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~ 915 (989)
|...-.--.+.|+-+--.+++
T Consensus 697 W~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 999888888999944444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-13 Score=148.12 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=215.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLT-YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYN--ALLSGCCKEEKLEQA 737 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 737 (989)
.|+++.|.+......+.. ++... |........+.|+++.|...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777655432 22233 333344457888999999999988875 44443222 336677888999999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD-------TYTTLINQYCKVQNMEKAKQLF 810 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~ 810 (989)
...+++..+..|.+..+...+...|.+.|++++|.+++.++.+.+..++.. +|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999988888888899999999999999999999998765443221 2333333333444556666677
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 811 LEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 811 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
+.+.+. .+.++.....++..+...|+.++|...+++.++ ..|+..... +.+....++.+++++..++..+..|.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 766543 355777888999999999999999999999988 455554322 23344569999999999999988776
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
|+..+..+++.+.+.|++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+++++.+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999887 45677889999999999999999999987653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=162.60 Aligned_cols=258 Identities=18% Similarity=0.155 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKG--LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
.+...+.+.|++++|++++++..... +.+...|..++......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997665554 466667777888888999999999999999976433 55667777776 689
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI-EPDNFTYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 879 (989)
+++++|.+++.+..+. .++...+..++..+...|+++++..+++++....- .++...|..++..+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 46667778888899999999999999999886322 33445777888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWV 959 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 959 (989)
++++++..|. |..+...+++.+...|+.+++..+++...+..+. ++..+..++.+|...|++++|..+++++.+. .
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhccccccccccccccccccc--c
Confidence 9999998766 8899999999999999999999999988877655 7888899999999999999999999998764 6
Q ss_pred c-cchhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 960 S-NSISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 960 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
| |+.....++..+...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 7 6788899999999999999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-12 Score=129.74 Aligned_cols=505 Identities=12% Similarity=0.037 Sum_probs=324.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 001966 402 NSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVS 481 (989)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (989)
+..-+..+..-+....++..|.-+-++....+..|+. ---+..+++-.|+++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 4455667777777788899999888888877655444 445778899999999998887665332 346777777788
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 482 TYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
.+.+..++++|..++..... .-+...|-.--. ...-..+.+. ++.. .......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 88899999999998873311 001111100000 0000000010 0000 00000011111122334445555
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 001966 562 AGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARG----ILPEVQTYSVLINGL-SKKLELREALGIF 636 (989)
Q Consensus 562 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~-~~~g~~~~A~~~~ 636 (989)
|...|.+.+.. |...+..+...-... .-.+.+.+..+.... ..-+......+.... ++..+ ++....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 55555555432 222221111110000 000111111111100 000111111111111 00000 0000000
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 001966 637 LELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPL 716 (989)
Q Consensus 637 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 716 (989)
.+..-.+..-+......-.+-+...+++.+..++.+...+.. ++....+..-|..+...|+..+-..+-.++.+. .|.
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 001111233356666667777888999999999999998873 446666666677888999999888888888887 577
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
.+.+|-+++--|...|+.++|.+.|.+....++.-..+|...+..+.-.|.-|+|...+..+.+.- +-...-+.-+.--
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 889999999999999999999999999999988888899999999999999999999998887531 1111112234556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCC----HHHHHHHHHHHHhc
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIEPD----NFTYYVMIDAHCKE 870 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~----~~~~~~l~~~~~~~ 870 (989)
|.+.++++-|.++|.+.... .|.|+..++.++-.....+.+.+|..+|+..++ +.+.+. ..++.+|+.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78899999999999998873 244677888888888889999999999999885 222222 23688899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+.+++|+..+++++...+. +..++..++-+|...|+++.|++.|.+++...|. +..+-..|.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 9999999999999998766 9999999999999999999999999999998876 544433343
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-11 Score=116.56 Aligned_cols=472 Identities=14% Similarity=0.149 Sum_probs=286.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 001966 412 GYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQE 491 (989)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 491 (989)
-+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344456666666666655443322222334445666777888888888887777643 4555566666666666788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 492 AGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLN 571 (989)
Q Consensus 492 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 571 (989)
|..+..+..+ ++..-..+...-.+.++-++-..+...+.+. ...-.++.......-.+.+|++++..++.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655432 2333333444444667766666666555432 22334455555555678888888888875
Q ss_pred CCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 001966 572 SGLVPNDVIYTS-IVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT 650 (989)
Q Consensus 572 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 650 (989)
. .|+-...|. +.-+|.+..-++-+.+++.-.+++ ++.+....|.......+.=+-..|..-..++.+.+-..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 4 344444444 344667778888888888877775 45556666666655555433344444444444432211
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 651 YNSLITSFCK-----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725 (989)
Q Consensus 651 ~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (989)
|- .+.-.++ -.+-+.|++++-.+.+. .|. .-..|+--|.++++..+|..+.+++.-. .|-......+.
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 11 1222222 23446788877776654 232 2234555688899999999988876532 34343333333
Q ss_pred HHHH-h----cCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 726 SGCC-K----EEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 726 ~~~~-~----~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.+-. + .....-|...|+-.-+.+. +......+++..+.-..++++++-++..+...-...|...+ .+..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 3221 1 1123344444444434433 34445667777777788899999999988876444444444 4788999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYV-MIDAHCKEGNVMEA 876 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~-l~~~~~~~g~~~~A 876 (989)
..|++.+|.++|-++....++.+..-...|+++|.+.++.+.|+.++-++- .| +..+... +++-|.+.+.+=-|
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888754444344444567789999999999988876552 33 3334444 44888899998888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
-+.|+.+...+ |+++.|. |+-.....+|..+.....+
T Consensus 481 aKAFd~lE~lD--P~pEnWe---------GKRGACaG~f~~l~~~~~~ 517 (557)
T KOG3785|consen 481 AKAFDELEILD--PTPENWE---------GKRGACAGLFRQLANHKTD 517 (557)
T ss_pred HHhhhHHHccC--CCccccC---------CccchHHHHHHHHHcCCCC
Confidence 88888877654 5566664 4444555666666555433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-13 Score=146.82 Aligned_cols=281 Identities=9% Similarity=0.003 Sum_probs=219.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHcCCHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST-LSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
.|+++.|.+.+....+.. +.....+.....+..+.|+++.|...+.++.+..+... ......+..+...|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999998888766642 11233343345555789999999999999998776443 3333447889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-------ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+....+++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999864 336778889999999999999999999999987544322 1333334333344455566666666
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+-+ ..| +......++..+...|+.++|.+.+++..+. +++....... .....|+.+++++.+++..+..|+ |
T Consensus 255 lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~--~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 255 QSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLI--PRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred CCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH--hhccCCChHHHHHHHHHHHhhCCC-C
Confidence 543 234 4557778889999999999999999999984 3455433333 334569999999999999999998 9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+..+..+|..+...|+|++|.+.|+++.+. .|+...+..++..+.+.|+.++|.+++++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999765 79998899999999999999999998875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-09 Score=113.33 Aligned_cols=347 Identities=13% Similarity=0.143 Sum_probs=168.9
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC
Q 001966 198 RDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVG 277 (989)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 277 (989)
+.+.-+|++++|..+-....+ ++-.+..|-+..=..=...|..---+.+|.-+...|. -|..---.+++.-..+|
T Consensus 368 neLfaqG~Y~eAAkvAAsSPr----gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGk-LNk~ETLEL~RpVL~Q~ 442 (1666)
T KOG0985|consen 368 NELFAQGEYEEAAKVAASSPR----GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGK-LNKYETLELCRPVLQQG 442 (1666)
T ss_pred HHHHhCccHHHHHHHHHhCch----hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhccc-ccHHHHHHHHHHHHhhh
Confidence 344556777777666554444 4445555555554444555666666666666666652 33333333333333444
Q ss_pred ChhHHHHHHHHHH-----HCC--CCCC-----HHHH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 278 FVDEAVELKNSMV-----EKG--LVPD-----SYTY------VNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 278 ~~~~A~~~~~~m~-----~~g--~~~~-----~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
+.+--..++.+=+ +.| +.|- ..+| +.++.+|...|.++++.-+.. +.|..||... +
T Consensus 443 RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdymf---l 516 (1666)
T KOG0985|consen 443 RKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYMF---L 516 (1666)
T ss_pred HHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHHH---H
Confidence 4443333332211 111 1110 0111 223344444444444433322 3355555332 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCC
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRT-YTSLIQGYCRMRK 418 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 418 (989)
+....+ -..+.|.++...|.+.. |...-++.+.+.+........+..++-..++.. .|+... -+.|+..-. .+
T Consensus 517 Lq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL-~~- 590 (1666)
T KOG0985|consen 517 LQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL-VH- 590 (1666)
T ss_pred HHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh-cc-
Confidence 333322 44555555555555431 223344455555555555555555555544332 333321 122222111 11
Q ss_pred hhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-----HHHHHccCCHHHHH
Q 001966 419 MVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNL-----VSTYFKKNKLQEAG 493 (989)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~ 493 (989)
|-++-+.+...+.- ...-+..+...|.+.|-+..|++.+.++.... -.++.+.+ +-.|...-.++.+.
T Consensus 591 ---aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~ 663 (1666)
T KOG0985|consen 591 ---APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSL 663 (1666)
T ss_pred ---chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHH
Confidence 11222222222211 22224556666677777777777776654321 11122221 23344455677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 494 KLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRR-----------GLKPNIHSFRAFILGYCMAGEMQTA 562 (989)
Q Consensus 494 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A 562 (989)
+.++.|...++..|..+...+..-|+..=-.+.-+++|+....- ++.-|+...-..|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 77777777777767666666667777666667777777765532 2334555555667777777777777
Q ss_pred HHHHHH
Q 001966 563 GRFFNE 568 (989)
Q Consensus 563 ~~~~~~ 568 (989)
.++.++
T Consensus 744 ERicre 749 (1666)
T KOG0985|consen 744 ERICRE 749 (1666)
T ss_pred HHHHhc
Confidence 777653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-12 Score=123.64 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=216.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---ChhhHHHHHHHHHHcCCHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-A---STLSFNTLIEFLCISNKLQEA 771 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A 771 (989)
.++.++|.++|-+|.+.+ +.+..+-.+|.+.|.+.|..|.|+.+.+.+.+... + ...+...|+.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888753 44556667788888888888888888888876533 2 234566788889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 772 HQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT----ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
..+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..|+..+....+++.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988643 224456778888999999999999999998886544432 3567788888888899999999999
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+++ .+|... .-..+++.+...|+++.|++.++.+.+.++..-+++...|..+|.+.|+.++.+..+.++.+..+.
T Consensus 206 Alq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-- 281 (389)
T COG2956 206 ALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-- 281 (389)
T ss_pred HHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence 998 777666 556677999999999999999999999887777888999999999999999999999999888754
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh---hcCCChhhHHHHHhhh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE---NSGVDLDESKDLMKQT 988 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~ 988 (989)
+..-..++..-....-.++|...+.+-+.. +|+...++.+.... ..-|.+.+...++++|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 344455555444444445565555554443 78877777766654 2345567777776665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=122.47 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=215.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
..|++.+|+++..+..+.+-. ....|..-+.+-...|+.+.+-.++.++.+..-.++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357777777777776665433 3344455556666777777777777777765324455555666666777777788888
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 740 LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD-------TYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
-..++.+.+|..+.......++|.+.|++.+...++.++.+.+.-.++. +|..+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888887777777777777788888888888888888887776655442 455555554444445554556666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001966 813 MQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 813 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
...+ .+-++..-.+++.-+..+|+.++|.++.++.++++.+|.-. ..-.+.+-++.+.=++..++..+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 6553 45556667778888889999999999999999977777622 223456778888888888888887655 77
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..+..|+..|.+.+.+.+|.+.++.+++.. |+...|..++.++.+.|+.++|.+.+++.+..-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999888876 5788899999999999999999999998875544454
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-08 Score=108.54 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=165.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR 313 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 313 (989)
.|+.|.+.|++-.|.+....=.+ +..|......+..++.+..-|++|-.+|+++.. +...+..|-+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 35566666666665543321111 123444455555555555556666666665542 1112222222223
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 314 LGDVRLVLSELIGKGLKLDTVAYY-ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 314 ~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
+.+|.++-+-. ++..+++.. .-.+-+...|+++.|...|-+... .-.-|.+-.....+.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 33444333221 111122211 112334445666666555544321 0112233344566777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 393 EIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN 472 (989)
Q Consensus 393 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (989)
.+.+.. .-..-|..+.+.|...|+++.|.++|.+. ..++--|.+|.+.|.+++|.++-.+.. |.+..
T Consensus 757 niqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 776543 22334556667777777888777777543 234556777778888887777766553 22334
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+.+..+.... .-..|...+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHH
Confidence 45555555666667777777776644332 33 2456677777777777666553221 123455566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKF 601 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (989)
+...|++..|...|-+..+ |.+-+++|-..+.+++|.++-
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 7777787777776655432 445556666666666666553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=112.85 Aligned_cols=418 Identities=13% Similarity=0.097 Sum_probs=197.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 001966 517 GLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596 (989)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 596 (989)
++.+.|++++|...+.-+.+. -.++...+..+..++.-.|.+.+|..+-.... .++..-..+...-.+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 334455555555555554442 23334444444444444555555554433321 112222223333334444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 001966 597 AISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNS-LITSFCKICDVDKAFQLYEEMC 675 (989)
Q Consensus 597 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~ 675 (989)
-..+.+.+.+. ..---+|.......-.+.+|++++...+..+ |+-...|. +.-+|.+..-++-+.++++-.+
T Consensus 140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 44433333221 1222233333333445566666666555432 22222222 2223445555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCC
Q 001966 676 EKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKE-----EKLEQALELFRDMLEKGLA 750 (989)
Q Consensus 676 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 750 (989)
.. ++.+....|..+....+.=+-..|.+-..++...+-..-+ .+.-.++. .+-+.|++++-.++..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 43 2223333333333333322222223333333322111000 11111221 2335556555555443
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ-------NMEKAKQLFLEMQQRNLKPATI 823 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~ 823 (989)
-+.+...|+-.|.+++++.+|..+.+.+.. ..| .-|..-.-.+...| .+.-|.+.|+-.-+++..-|..
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhhcCC--CCh--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 223344455566677777777776665532 122 22222222222222 2444555555444444333322
Q ss_pred -HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 -TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
--.+++..+.-..++++.+.+++.+... ...|+.....++.+.+..|++.+|.++|-++....++.+......|+++|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 3445555555666777777777776663 22334444556777777888888888877665544442333344667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
.+.++.+-|..++-++-.. ......+-.++..+++.+.+--|-+.|+.+.. +.|+++-|
T Consensus 439 i~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 8888888887777553221 11122334566677777777777777776644 35655444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-09 Score=109.93 Aligned_cols=613 Identities=15% Similarity=0.113 Sum_probs=286.4
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
..++|...+++.+.+.++ ..-...|....+-.++..|+.++|...-+.-.+.++ -+.++|..++-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 345566666666665553 222333444444445555666666655555544332 245555555555555556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN- 433 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 433 (989)
.+......+.. |...|.-+.-.-.+.|+++-....-....+.. +.....|....-++.-.|++..|..++++..+..
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666555432 45555555444455555555555544444431 2223344455555555555555555555554432
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHH
Q 001966 434 LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVS-CFN 512 (989)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~ 512 (989)
-.|+...|......+.+ .....+.|..++|.+.+..-... + .|.. .-.
T Consensus 175 ~~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e 223 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEE 223 (700)
T ss_pred cCCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhh
Confidence 12333333222111110 01222334444444433332211 0 0111 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 513 SLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFR-AFILGYCMAGEMQTAG-RFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
+-...+.+.+++++|..++..++.. .||...|. .+..++.+..+.-++. .+|....+. .|....-.-+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 2233444555555555555555554 23333322 2223332222222222 334333322 1111000000000011
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC----------CCCCHhhH--HH
Q 001966 591 -EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE----ALGIFLELLEKG----------LVPDVDTY--NS 653 (989)
Q Consensus 591 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~----------~~p~~~~~--~~ 653 (989)
..-.+..-.++..+.+.|+++-.....++ |-.....+- +..+...+...| -+|....| -.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 11222333344555555554322222221 111111110 011111111110 13444333 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 654 LITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE 732 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 732 (989)
++..+-..|+++.|..+.+..++. .|+. .-|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 566677888888888888887765 4543 344455677888888888888888888765 445444334445556677
Q ss_pred CHHHHHHHHHHHHHcCCC---Ch----hhHHHH--HHHHHHcCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLA---ST----LSFNTL--IEFLCISNKLQEAHQLLDAMLEE--QV---NPNHDTYTTLINQYC 798 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~---~~----~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~ 798 (989)
+.++|.++.....+.+.. +. -.|..+ +.+|.+.|++.+|+.-|..+... .+ +.|..|| |.
T Consensus 454 ~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty------c~ 527 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY------CM 527 (700)
T ss_pred ccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH------HH
Confidence 888888888877776641 10 122222 34566777777777666555431 01 1122222 34
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CC-CCHHHHHHHH----HHHHhc-C
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG-IE-PDNFTYYVMI----DAHCKE-G 871 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~-p~~~~~~~l~----~~~~~~-g 871 (989)
+.|-+..=+++++---. +...+.-+.+ ...|+++|-+|.+.. .. +.......+. ....++ .
T Consensus 528 rk~tlrsYv~ll~~~d~--L~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk 595 (700)
T KOG1156|consen 528 RKGTLRSYVELLEWEDN--LRSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRK 595 (700)
T ss_pred hcCcHHHHHHHHHHHHh--hccChHHHHH----------HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHH
Confidence 45554444443321111 1111111111 234566666666521 00 1111111111 111111 1
Q ss_pred CHHHHHHHHHHHH---------hCCCC--CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 872 NVMEALKLKDLIF---------DKRMP--ISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 872 ~~~~A~~~~~~~~---------~~~~~--~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+-.+|.+.-+... +.+.+ ++.. .++..+.+.. -.++|.+++......+.. +..++..-...|.+
T Consensus 596 ~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~r 671 (700)
T KOG1156|consen 596 AKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYR 671 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHH
Confidence 1112222111111 11222 3333 4555566655 478899999998888877 89999999999999
Q ss_pred cCChhHHHHHHHHHH
Q 001966 940 EGVMDYAAKVLECMA 954 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~ 954 (989)
.|++.-|.+.++++.
T Consensus 672 k~k~~l~~~~~~~~~ 686 (700)
T KOG1156|consen 672 KGKFLLALACLNNAE 686 (700)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-08 Score=108.60 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 001966 206 MELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVEL 285 (989)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (989)
...|...|-+.++ ..+.=...|..|+..|+..-+...|.+.|++..+... .+...+......|.+..+++.|..+
T Consensus 474 ~~~al~ali~alr----ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALR----LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHh----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 5566666666665 3333455788888888877788888888888877532 4566777778888888888888887
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 001966 286 KNSMVEKGLV-PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGN 364 (989)
Q Consensus 286 ~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 364 (989)
.-..-++... .-...|-.+.-.|.+.++...|..-|+...+..+. |...|..++.+|.+.|++..|.++|.+.....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 4444333211 11122333444566778888888888888776543 778888888888888888888888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001966 365 QIDLVIYNTLLKGFCKSGKMEKAREVLNEIIR 396 (989)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 396 (989)
. +...---..-..|..|++.+|+..+.....
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 222222333446778888888888877653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-08 Score=113.30 Aligned_cols=664 Identities=10% Similarity=-0.026 Sum_probs=395.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (989)
.+...|+..|-+.....+. -...|..+...|+...+...|.+.|++..+.+.. |........+.|.+..++++|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4466777777666654322 3567888888898888999999999998876533 6777888899999999999999885
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 001966 357 DELVASGNQ-IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLV 435 (989)
Q Consensus 357 ~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (989)
-...+.... .-...|-...-.|.+.++...|+.-|+...+.. +.|...|..++.+|...|++..|.+.|.+....+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 444443211 011233334445667889999999999988765 5677899999999999999999999999887753
Q ss_pred cC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-------
Q 001966 436 PS-VFTYGVIIDGLCHCGDLRQINAILGEMITRG------LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRR------- 501 (989)
Q Consensus 436 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 501 (989)
|+ ...---.....|..|.+.+|...+....... ...-..++..+...+.-.|-..+|...+++-++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222233445678899999998888776531 111122222333333334444455555544332
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCC
Q 001966 502 EGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEM---Q---TAGRFFNEMLNSGLV 575 (989)
Q Consensus 502 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~ 575 (989)
.....+...|-.+.. |..+|-... .. .|+......+..-....+.. + -+.+.+-.-++ ..
T Consensus 707 h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 111112222222221 222222221 11 22222222222212222221 1 11222211111 12
Q ss_pred CCHHhHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 576 PNDVIYTSIVDGYCK----E----GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPD 647 (989)
Q Consensus 576 ~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 647 (989)
.+...|..++..|.+ . .+...|+..+.+.++. ...+..+|+.|.-. ...|++.-|...|-.-....+. .
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-C 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-c
Confidence 234445455544443 1 2334677888877765 34467788877655 5667777777777665554333 6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--H--CCCCCCHHHHHH
Q 001966 648 VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT--K--RGVPLDGSVYNA 723 (989)
Q Consensus 648 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~~~~~ 723 (989)
..+|..+.-.+....+++.|...|....... +.|...|-.........|+.-++..+|..-- . .|--++..-|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 7778888878889999999999999888763 2366677666666667888888888887622 1 222344444544
Q ss_pred HHHHHHhcCCHHHHHH----------HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH-
Q 001966 724 LLSGCCKEEKLEQALE----------LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYT- 791 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~- 791 (989)
........|+.++-+. .++......|....+|...+......+.+..|.+...+.+.- ...-+...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4445556666555443 444555566677788888888888888888888887765421 0122344444
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---H-HHHHHH
Q 001966 792 ---TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN---F-TYYVMI 864 (989)
Q Consensus 792 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~-~~~~l~ 864 (989)
.....++..|.++.|...+..... ..+..+...- .+..-.|+++++.+.|++++. +.-+. . ....++
T Consensus 1009 ak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHH
Confidence 344556777888877665543321 1111111111 112446899999999999988 33322 2 233345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHhcCC
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR--LGFASCRTVANDFLREGV 942 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 942 (989)
.+....+..+.|...+-+..... +++......+...+.-..+-.......+++...-.. ..-..-...-.+|...|+
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r 1161 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGR 1161 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhh
Confidence 66677888888988888887764 447777777766665555544444444444332100 011112344457788899
Q ss_pred hhHHHHHHHHHHhCCCcc-cchhHHHHHhhh
Q 001966 943 MDYAAKVLECMASFGWVS-NSISLADIVKGE 972 (989)
Q Consensus 943 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 972 (989)
-....+.+++..- ..| |+..|..|..-|
T Consensus 1162 ~~~vk~~~qr~~h--~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1162 SVAVKKQIQRAVH--SNPGDPALWSLLSVRY 1190 (1238)
T ss_pred hHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 8888889988854 467 466665555433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-10 Score=110.08 Aligned_cols=271 Identities=11% Similarity=0.034 Sum_probs=140.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 645 VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNA 723 (989)
Q Consensus 645 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 723 (989)
+-|+.....+...+...|+.++|+..|++.... .|+. .......-.+.+.|+++....+...+.... .-....|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 334555555666666666666666666655543 1211 111222223344555555555555554331 112233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
-+......++++.|+.+-++.++.++.+...+..-+..+...|+.++|.-.|+...... +-+...|..|++.|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 33333445556666666666666555555555555556666666666666666555421 12445666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLL-NGYN-RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
.+|.-+-+...+. ++.+..+...++ ..+. .-.--++|.+++++.+. +.|+.. ....++..+...|.++.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 6665555544432 223333333332 2222 12234556666666655 556554 4444556666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.+.. .||......|++.+...+.+++|.+.|..++..+|+
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 665542 345555666666666666666666666666665554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-08 Score=105.69 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=183.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCC
Q 001966 374 LLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGD 453 (989)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 453 (989)
-|..|.+.|..-.|.+....=.+ +..|......+..++.+..-+++|-.+|+++..- ..-+..|-+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 45566777776666554322111 1344445555555555555566666666655321 112223333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 454 LRQINAILGEMITRGLKPNAIIYT-NLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLV 532 (989)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (989)
+.+|.++-+-. ++..++... .....+...|+++.|+.-|-+.. .....|.+-....++.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 34444433322 122222222 12233445566676666654432 12233455566788888998888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 533 EMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPE 612 (989)
Q Consensus 533 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 612 (989)
.++.+.. -...|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|++++|.++-.+.. |....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 8877532 33457777888999999999998886542 24556788999999999988876653 33445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 613 VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDG 692 (989)
Q Consensus 613 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 692 (989)
...|.+-..-+-++|++.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.- ..-..|..-+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHH
Confidence 5666666667778888888887764432 233 345667788888777776654421 1123345556667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
|-..|++..|...|-+.. -|.+.+++|...+-|++|..+-
T Consensus 892 ~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 777888888887765443 2555667777777777776553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-12 Score=145.22 Aligned_cols=247 Identities=15% Similarity=0.036 Sum_probs=126.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK---------EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
++++|..+|++..+.+ |.+...|..+..++.. .+++++|...++++++.+|.+..++..++..+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456666666666553 3344455554444331 12355666666666666665666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
++|...++++++.. +.+...+..++..+...|++++|+..+++..+ ..|+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666666542 11344555555666666666666666666655 23332 2222333344445666666666666
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+++. ..|+.. .+..++.++...|++++|...++++....+. +...+..++..|...|+ +|...++++.+..-. .
T Consensus 432 ~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~-~ 506 (553)
T PRK12370 432 LRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFLESEQR-I 506 (553)
T ss_pred HHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH-h
Confidence 5541 123333 3444555555666666666666555443222 34444455555555553 555555554433211 1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.-...+..+|.-.|+.+.+..+ +++.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 11122245555555555555555 4443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=126.09 Aligned_cols=233 Identities=11% Similarity=0.000 Sum_probs=156.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 722 NALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ 801 (989)
Q Consensus 722 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 801 (989)
+.+..+|.+.|.+.+|.+.++..++..+ .+.++..|..+|.+..+++.|+.++.+.++. ++.++.....+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 4566777777777777777777766543 4445666777777777777777777777664 2223333344556666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 802 NMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 802 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
+.++|.++|+...+.. +.+......++..|.-.++.+-|+.+|++++..|+. +...|.+++-+|.-.+++|-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777777632 334556666667777777777777777777775543 34456666666667777777777777
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 001966 882 LIFDKR--MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWV 959 (989)
Q Consensus 882 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 959 (989)
+++..- +..-..+|+.++.+....||+.-|.+.|+-++..+++ +..++++|+..-.+.|+.++|+.+++.+.+. .
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV--M 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--C
Confidence 776542 2234566777777777777777777777777777766 7777777777777777777777777776543 5
Q ss_pred cc
Q 001966 960 SN 961 (989)
Q Consensus 960 p~ 961 (989)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 65
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=117.76 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=196.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN---HDTYTTLINQYCKVQNMEKA 806 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 806 (989)
-+.+.++|+++|-+|.+..+....+-.+|+..|.+.|..|+|+.+.+.+.+..--+. ......|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357789999999999998888888899999999999999999999999987421111 13445677788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 807 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
.++|..+.+.+ .--..+...|+..|....+|++|++..+++.+.+-.+... .|-.|+..+....+++.|...+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998743 3345678899999999999999999999999844333222 344577777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 883 IFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 883 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+.+.+++ ...+-..+++.....|+++.|++.++.+.+.+|+.-+.+...|..+|...|+.++....+.++.+. .++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 9998766 667777899999999999999999999999998877889999999999999999999999998765 4554
Q ss_pred hhHHHHHhhh
Q 001966 963 ISLADIVKGE 972 (989)
Q Consensus 963 ~~~~~l~~~~ 972 (989)
+....+.+..
T Consensus 283 ~~~l~l~~li 292 (389)
T COG2956 283 DAELMLADLI 292 (389)
T ss_pred cHHHHHHHHH
Confidence 4444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-09 Score=113.84 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=131.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001966 476 YTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCM 555 (989)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 555 (989)
|..++..| ..+++...+++.+.++++- +.-..+.....-.++..|+.++|.......+...+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44444444 5566777777777666531 112333333333455667777777777666664433 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 556 AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGI 635 (989)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 635 (989)
..++++|++.|..++..+ +.|...+.-+.-.-.+.++++.....-....+. .+.....|..++.+..-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665 556666666666666667776666666665553 222445666666667777777777777
Q ss_pred HHHHHHCC-CCCCHhhHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001966 636 FLELLEKG-LVPDVDTYNSLITS------FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDE 708 (989)
Q Consensus 636 ~~~~~~~~-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 708 (989)
+++..+.. ..|+...+.-.... ..+.|..+.|.+.+..-... +......-.+-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 77766543 23444444433322 23345555555554443322 111222223344556666666666666666
Q ss_pred HHHC
Q 001966 709 MTKR 712 (989)
Q Consensus 709 ~~~~ 712 (989)
++..
T Consensus 245 Ll~r 248 (700)
T KOG1156|consen 245 LLER 248 (700)
T ss_pred HHhh
Confidence 6665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-09 Score=105.55 Aligned_cols=293 Identities=12% Similarity=0.029 Sum_probs=209.4
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEK-GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
+-.++...|...+-.+... -++.|+.....+.+.+...|+.++|...|++....+ +-+........-.+.+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 4445555555555444333 355677788888888888999999999998887653 22223333334445677888888
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
..+...+..........|..-+..+....+++.|+.+-++.++... .+...+..-+..+...|+.++|.-.|+..+.
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-- 362 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM-- 362 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh--
Confidence 8888887776543444455555666777888889888888886532 2556677777788888999999888888877
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCHH
Q 001966 818 LKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI-DAHC-KEGNVMEALKLKDLIFDKRMPISAE 893 (989)
Q Consensus 818 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 893 (989)
+.| +...|..|+.+|...|++.||....+.... .-|.+. +...++ ..+. ....-++|.+++++.+...|. -..
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~ 439 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTP 439 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHH
Confidence 444 566889999999999999999888888877 455444 444443 3332 334468888899888876644 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+-..++..+...|++++++.++++.+... +|...+..||+++...+.+++|...|..+++. .|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 67778888888899999999999888765 46677788999999999999998888888653 6753
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-12 Score=122.11 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 001966 684 LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLC 763 (989)
Q Consensus 684 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 763 (989)
.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..+...|+.++.+-++..|.+......+++.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33356777888888888888888877765 4566777777888888888888888888888877777777777778888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+++.+.| --++..|+.++-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 8888888888888887653 2255555666677777888888888888888877 4566778888888888888888888
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 844 VFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
-|++++..--.|+.. .|+++.......|++.-|.+.|+-++..+.. +.++++.|+-.-.+.|+.++|..+++.+...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888744456544 7888888888889999999999988887766 8889999998889999999999999988777
Q ss_pred CCc
Q 001966 922 GFR 924 (989)
Q Consensus 922 ~~~ 924 (989)
.|.
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-10 Score=110.39 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 592 GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLY 671 (989)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 671 (989)
|++..|.++..+..+.+-. ....|..-+.+--+.|+.+.+-.++.++.+....++...+-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4455555444444333221 122233333344444444444444444444322333333344444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS 751 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 751 (989)
+++.+.+.. +.........+|.+.|++.+...++..+.+.+.-.++..-.- .
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------e 228 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------E 228 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------H
Confidence 444444222 333344444444555555555555555444443222210000 0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
..++..+++-....+..+.-...++....+ ...++..-.+++.-+.+.|+.++|.++..+..+++..|+.. ....
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 012233333222222222222333333321 22234444455555556666666666665555554444411 1122
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+.+-++...-++..++-++ ..|+. ..+..|+..|.+.+.|.+|.++++.+++. .|+...|..+++++.+.|+.++
T Consensus 304 ~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 3344555555555555555 33332 25555666666666666666666655553 3456666666666666666666
Q ss_pred HHHHHHHHHHC
Q 001966 911 ALRLLNEMGES 921 (989)
Q Consensus 911 A~~~~~~~~~~ 921 (989)
|.++.++.+-.
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666665533
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-11 Score=124.39 Aligned_cols=199 Identities=16% Similarity=0.055 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|...+++.++.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666665432 1234555556666666666666666666665532 2334455556666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|...++++++....|. ...+..++.++...|++++|.+.++++++..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655221222 224445555666666666666666666655433 45555566666666666666
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|...++++++..+. ++..+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666555333 45555556666666666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-11 Score=136.13 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---------NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
++++|+.+|+++++..|.+..++..++.++... +++++|...++++++... .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCH
Confidence 345666666666666665555555555444321 235666666666665421 1445555566666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
++|+..|++..+.+ +.+...+..++..+...|++++|+..++++++ +.|+.. .+..++..+...|++++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666666632 22344556666666666666666666666666 556543 222333445556666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 883 IFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 883 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+++..++.++..+..++.++...|+.++|...++++....+. +......++..|...|+ +|...++++.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 655432224455566666666666666666666665555444 44455556666666553 5555555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-11 Score=121.11 Aligned_cols=195 Identities=16% Similarity=0.137 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 001966 787 HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMID 865 (989)
Q Consensus 787 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 865 (989)
...+..++..+...|++++|++.+++..+.. +.+...+..++..+...|++++|...+++.++ ..|+. ..+..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 3445555556666666666666666655532 22344555566666666666666666666665 33432 24555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 866 AHCKEGNVMEALKLKDLIFDKRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 866 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
.+...|++++|.+.++++++... ......+..++.++...|++++|...++++++..|. ++..+..++.++...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 66666666666666666654321 113344555566666666666666666666665554 4555666666666666666
Q ss_pred HHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 945 YAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+|...++++.+. .| +...+..++..+...|+.++|..+.++
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666665543 23 344445555555566666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-10 Score=114.61 Aligned_cols=423 Identities=16% Similarity=0.098 Sum_probs=255.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCH
Q 001966 516 IGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN-DVIYTSIVDGYCKEGNI 594 (989)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 594 (989)
.+.+..|+++.|+..|.+.+..... +.+-|..-..+|...|++++|.+--.+..+. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4455677777777777777765433 6666777777777777777777655555544 233 34566666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 001966 595 AEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICD-VDKAFQLYEE 673 (989)
Q Consensus 595 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~ 673 (989)
++|+.-|.+-++.. +.+...++.+..++ ..+.+. +. ...++..|..+..--....- .+.+....-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 77777777766642 23455555555554 111110 10 01122222222211111000 0111111111
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCChhHH-HHHHHHHH-H----------CCCCC--C----------HHHHHHHHH
Q 001966 674 MCEKGVEPNTLTY---NVLIDGFCKAGDLTEP-FQLFDEMT-K----------RGVPL--D----------GSVYNALLS 726 (989)
Q Consensus 674 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~~~~~-~----------~~~~~--~----------~~~~~~l~~ 726 (989)
....+ +-+...| ..++.+.......+.- ...-..+. . .+.++ | ..-...+++
T Consensus 154 ~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 11111 0011111 0011111100000000 00000000 0 00000 0 112445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHh
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT-------YTTLINQYCK 799 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~ 799 (989)
+..+..+++.|++.+...++.. .+..-++....+|...|.+.+.....+..++.|.. ...- +..+..+|.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 7777788899999999998887 66666777788888889888888888777765433 1122 2234456777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALK 878 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 878 (989)
.++++.|+..|++.......|+. ..+....+++........- +.|+.. -...-++.+.+.|++.+|++
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 88899999999887764434433 2234456666666666655 667654 23334788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
.|.+++..+|. |...|...+-+|.+.|++..|++-.++.++.+|+ ....|..-|.++....+|+.|.+.|++.++.
T Consensus 380 ~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~-- 455 (539)
T KOG0548|consen 380 HYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL-- 455 (539)
T ss_pred HHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 99999999876 9999999999999999999999999999999887 7889999999999999999999999999764
Q ss_pred cccch-hHHHHHhhh
Q 001966 959 VSNSI-SLADIVKGE 972 (989)
Q Consensus 959 ~p~~~-~~~~l~~~~ 972 (989)
.|+.. +...+.+..
T Consensus 456 dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCV 470 (539)
T ss_pred CchhHHHHHHHHHHH
Confidence 67543 333333333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=125.79 Aligned_cols=235 Identities=15% Similarity=0.113 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEE-----QV-NPNHD-TYTTLINQYCKVQNMEKAKQLFLEMQQR-----N-LKP 820 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p 820 (989)
+...++..|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|+.+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555554421 10 11221 2233555666666666666666666441 1 111
Q ss_pred C-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 001966 821 A-TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KGIEP-DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK---RMP 889 (989)
Q Consensus 821 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 889 (989)
. ..+++.|+..|.+.|++++|..+++++++ .|..+ +.. .+..++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 23566666666667776666666666554 12222 222 3444556666677777777776666542 111
Q ss_pred C-C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----Ccc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 001966 890 I-S---AEAYKAIIKALCKREEYSEALRLLNEMGESG----FRL---GFASCRTVANDFLREGVMDYAAKVLECMASF-- 956 (989)
Q Consensus 890 ~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 956 (989)
+ + +.++..|+..|.+.|++++|.++++++++.. ..- ....++.++..|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 1 3456677777777777777777777776543 110 1334566777777777777777666654321
Q ss_pred CCcc---c-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 957 GWVS---N-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 957 ~~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
...| + ...+-+|+..|..+|++++|+++..++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1122 3 245567777777777777777766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=107.55 Aligned_cols=205 Identities=14% Similarity=-0.005 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN 833 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 833 (989)
+...|+-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..... +-+..+.|..+.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556666777777777777777777653 1244666777777777777777777777776632 223456677777777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|++++|...|++++.....|... +|.+++.+..+.|+++.|.+.+++.++.++. .+.....+++...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 7777777777777777643334333 6677777777777777777777777776655 5566666777777777777777
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.+++.....++ +....+...+.+-...|+-+.|-++=..+.+. -|.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 77777666655 46666666666667777766666655555432 455433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-07 Score=97.34 Aligned_cols=268 Identities=16% Similarity=0.158 Sum_probs=148.4
Q ss_pred ChhhHHHHHH--HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 262 NVATYNVVIG--GLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 262 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
|.+|-..+++ -|...|++|.|.+..+..+ +...|..+...|.+..+++-|.-.+..|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------- 787 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------- 787 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh-----------
Confidence 4455555553 3455677777776666654 44566667777777777666666665554310
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
. .+.+++..+.|- .+-....-.-.+.|.+++|..+|++.++ |..|=..|-..|.+
T Consensus 788 -----------g-aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w 842 (1416)
T KOG3617|consen 788 -----------G-ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMW 842 (1416)
T ss_pred -----------h-HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccH
Confidence 0 112223333211 1111111123356788888888887764 23344445567888
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
++|.++-+.-.+..+ ..||..-..-+-..++++.|++.|++.-.. --.++. ++. .++.....+.+++
T Consensus 843 ~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 843 SEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc
Confidence 888877655333222 345555556666677888888877764221 001111 111 1122222222332
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 500 RREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDV 579 (989)
Q Consensus 500 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (989)
. |...|.-...-+-..|+.+.|+.+|....+ |-+++...|-+|+.++|-++-++ .-|..
T Consensus 910 ~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~A 968 (1416)
T KOG3617|consen 910 R------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKA 968 (1416)
T ss_pred c------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHH
Confidence 2 334444444445567788888877766543 45566667777888777776554 23556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 580 IYTSIVDGYCKEGNIAEAISKFRCML 605 (989)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (989)
....|...|-..|++.+|+..|-+..
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66677777777788888877776554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-07 Score=100.24 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=98.9
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
..|-.++|..+|.+-+.. ..+=..|-..|.+++|.++-+.--+. .=..||.....-+-..++++.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHH
Confidence 456677777777665532 22333344556777776665432221 123455555555556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
.|++.-.. --.++. |+. .+...-....+++ .|...|.--..-+-..|+++.|+.+|....+
T Consensus 880 yyEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 880 YYEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 66643110 001111 111 0111111112222 2334444444445567777777777776543
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 435 VPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR 500 (989)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (989)
|-+++...|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455666777778888777776653 255556667777777788888877777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-09 Score=110.17 Aligned_cols=250 Identities=18% Similarity=0.122 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhH-------HHH
Q 001966 686 YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSF-------NTL 758 (989)
Q Consensus 686 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~l 758 (989)
...+.+...+..+++.|++.+....... .+..-++....+|...|.+.+.+......++.|.....-+ ..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3456666777788888888888887764 4555566677788888888888887777777665322222 224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGN 837 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 837 (989)
+.+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...- +.|+.. -...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 44667778889999999888765444332 2233445556555555444 344432 23334677788888
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
+..|+..|.+++. ..|++. .|.+.+-+|.+.|.+..|++-.+..++.+++ ....|..-+.++....+++.|.+.|+
T Consensus 374 y~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 374 YPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988888888 567665 7888888888888888888888888888655 67778877888888888888888888
Q ss_pred HHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 917 EMGESGFRLGFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 917 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
++++.+|. +..+...+..++.....-+...++.++
T Consensus 451 eale~dp~-~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALELDPS-NAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHhcCch-hHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 88888866 666666666666653333344444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-10 Score=117.64 Aligned_cols=214 Identities=14% Similarity=0.014 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 732 EKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAK 807 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 807 (989)
+..+.++.-+.+++...+ .....+..++..+...|+.++|...|++.++... .+...|+.++..+...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 344556666666665433 1234466666677777777777777777776432 24567777777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
..|++..+ +.|+ ..+|..++.++...|++++|...+++.++ ..|++.........+...+++++|+..+++....
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77777776 3444 55677777777777777777777777777 6665542222222334456777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-------HCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMG-------ESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
. .++. |. .+......|+..++ ..++.+. +..++ ...+|..+|.++.+.|++++|+..|+++++.
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 1121 21 12233344544333 2333332 11222 3457788888888888888888888877754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=118.50 Aligned_cols=237 Identities=18% Similarity=0.133 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEK-------GLASTL-SFNTLIEFLCISNKLQEAHQLLDAMLEE-----QV- 783 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~- 783 (989)
..+...+...|...|+++.|+.+++..++. ..+... ....++..|...+++++|..+|++++.- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777788888888888888877765 222222 3344778888889999999998888731 21
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhC---C
Q 001966 784 NPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQR-----NL-KPAT-ITYRSLLNGYNRMGNRSEVFVVFEEMLGK---G 852 (989)
Q Consensus 784 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g 852 (989)
.|. ..+++.|...|++.|++++|..++++..+- +. .|.. ..++.++..+...+++++|..++++.++. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 121 246777778889999998888887776441 22 2222 24677788889999999999999987761 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 853 IEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKR----MP---ISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 853 ~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..+++ .++..|+..|...|++++|.+++++++... -. -....++.++..|.+.+++++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22333 278889999999999999999999998641 11 11345778888899999999999998886543
Q ss_pred ----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 922 ----GFR-LG-FASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 922 ----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+|. |+ ..+|..|+..|...|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 333 12 4468899999999999999999998876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-10 Score=101.96 Aligned_cols=202 Identities=15% Similarity=0.049 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.+...+.-.|.+.|+...|..-++++++..|.+..++..++..|.+.|..+.|.+.|++.+..... +-.+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 355566777888888888888888888888877888888888888888888888888888765322 4466777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 876 (989)
.+|++++|...|++....-.-| -..+|..++.+..+.|+.+.|.+.|++.++ +.|+.. +...+...+.+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 8888888888888877632222 245777888888888888888888888888 677655 677777888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..+++.....+. ++.+.+...++.-...|+-+.|.++=..+....|.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 888887776654 57777777777777788888777777766666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-08 Score=101.48 Aligned_cols=442 Identities=13% Similarity=0.104 Sum_probs=210.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHH--Hhc
Q 001966 481 STYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRA--FILGY--CMA 556 (989)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~--~~~ 556 (989)
+.+...|++++|.....+++..+. -+...+.+-+.++.+.+++++|+.+.+.-.. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHc
Confidence 344455556666666665555431 2333444444455556666666543332111 011111 12222 355
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 557 GEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILP-EVQTYSVLINGLSKKLELREALGI 635 (989)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 635 (989)
+..++|...++-.. ..+..+...-...+.+.|++++|+++|+.+.+.+... +...-..++.. +....+.
T Consensus 93 nk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-- 162 (652)
T ss_pred ccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH--
Confidence 66666666555111 1122233334455556666666666666665543211 11111111110 0000000
Q ss_pred HHHHHHCCCCCCHhhHHHHHH---HHHhcCCHHHHHHHHHHHHHC-------CCCC--CH-----HHHHHHHHHHHhcCC
Q 001966 636 FLELLEKGLVPDVDTYNSLIT---SFCKICDVDKAFQLYEEMCEK-------GVEP--NT-----LTYNVLIDGFCKAGD 698 (989)
Q Consensus 636 ~~~~~~~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~-------~~~~--~~-----~~~~~li~~~~~~g~ 698 (989)
.+......| ..+|..+-+ .+...|++.+|+++++...+. +-.. +. .+-..|...+...|+
T Consensus 163 --~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 163 --LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred --HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 111111122 222332222 344566666666666665211 0000 00 122345556677788
Q ss_pred hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH-H-HHHHHHHHHHHcCCC----------ChhhHHHHHHHH
Q 001966 699 LTEPFQLFDEMTKRGVPLDGS----VYNALLSGCCKEEKL-E-QALELFRDMLEKGLA----------STLSFNTLIEFL 762 (989)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~~----------~~~~~~~l~~~~ 762 (989)
.++|..++...++.+ ++|.. .-|.++..- ...++ + .++..++........ -...+...+-..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~-~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALS-KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhc-cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887765 34432 222222221 11111 1 122222222111100 001111111112
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY-CKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSE 840 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 840 (989)
.-.+..+.+.++...... ..|....-+.+..++ ++...+.+|.+++....+.. +.+ ..+....+......|+++.
T Consensus 318 l~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHH
Confidence 223444455554444332 233333222222222 23335777788877776632 222 4455666677788899999
Q ss_pred HHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHccC
Q 001966 841 VFVVFE--------EMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK--RMPISAE----AYKAIIKALCKRE 906 (989)
Q Consensus 841 A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g 906 (989)
|.+++. .+.+.+..|. +...+...+.+.++-+-|..++.+++.- .-.+... .+..++..-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999888 5555333443 4444556677777766677776666532 0111222 2333444455679
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+-++|..+++++++.+|. |..+...+..+|.... .+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPN-DTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 999999999999988877 8888888888887763 466655443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-09 Score=113.65 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=129.4
Q ss_pred ChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRG-VPL--DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++..|.+..++..++..+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555431 111 1344666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE 854 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 854 (989)
|++.++.... +..+|..++..+...|++++|++.|++..+. .|+..........+...++.++|...+++.... ..
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~ 196 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LD 196 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CC
Confidence 7777764211 3456666777777777777777777777763 344321111112233456777777777665542 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNVMEALKLKDLIFD---KRM---PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|+...+ .......|+..++ +.++.+.+ ..+ +...++|..++..+.+.|++++|+..|+++++.+|.
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 322221 2222334544333 23333321 111 113467888888888888888888888888877754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-07 Score=96.68 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 628 ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYE--------EMCEKGVEPNTLTYNVLIDGFCKAGDL 699 (989)
Q Consensus 628 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~ 699 (989)
...++.+++...-+....-...+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 355555555555444333223444445555566666666666666 3333333333 233444555555555
Q ss_pred hHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 700 TEPFQLFDEMTKR--GVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 700 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
+.|..++.+.... ...+. ..++..++..-.+.|+-++|..+++++.+.++++..+...++.+|++. +++.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 5555555544331 00011 112222223333445555555555555555555555555555555443 2344433
Q ss_pred H
Q 001966 774 L 774 (989)
Q Consensus 774 ~ 774 (989)
+
T Consensus 513 l 513 (652)
T KOG2376|consen 513 L 513 (652)
T ss_pred H
Confidence 3
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-09 Score=114.92 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=165.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cC
Q 001966 658 FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-----EE 732 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g 732 (989)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+... ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34556666666655543332 22223334445555566666666666666666553 3333333333333311 12
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL-QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
+.+...++|+++....|..... ..+.-.+.....+ ..+..++..++.+|+++ ++..+-..|....+.+-..+++.
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 3455566666665554411111 1111111111112 23444555555665443 34444444443333333334444
Q ss_pred HHHHC--------------CCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 001966 812 EMQQR--------------NLKPATI--TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM 874 (989)
Q Consensus 812 ~~~~~--------------~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 874 (989)
..... .-+|... ++.-++..|...|++++|+++++++++ ..|... .|..-+..+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 43221 1134432 445667778888888888888888888 677654 6777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--C----HHhH--HHHHHHHHhcCChhHH
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--G----FASC--RTVANDFLREGVMDYA 946 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~--~~l~~~~~~~g~~~~A 946 (989)
+|.+.++.+...+.. |..+-+..+..+.+.|+.++|.+++......+.+| + -.+| .-.|.+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888766 77777777788888888888888888776554222 1 1133 4567788888888888
Q ss_pred HHHHHHHHh
Q 001966 947 AKVLECMAS 955 (989)
Q Consensus 947 ~~~~~~~~~ 955 (989)
++-+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-09 Score=116.06 Aligned_cols=291 Identities=16% Similarity=0.175 Sum_probs=213.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc----
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---- 765 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 765 (989)
...+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+|.+..-+..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 45567899999999999886654 4444555667788899999999999999999999998888888777776333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 766 -NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME-KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 766 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
...+.-.++++++.+.- |.......+.-.+.....+. .+..++..+..+|+|+- +..+-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHH
Confidence 25677888898887653 43333333322222222333 45566777778886543 3344444444444444455
Q ss_pred HHHHHHhC----CC----------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 844 VFEEMLGK----GI----------EPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 844 ~~~~~~~~----g~----------~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
++...... +- .|... ++..++..|...|++++|++++++++++.|. .++.|..-++++-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55554431 11 12222 4466778888999999999999999998766 78999999999999999
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc------hhH--HHHHhhhhcCCChh
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS------ISL--ADIVKGENSGVDLD 979 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~--~~l~~~~~~~g~~~ 979 (989)
+++|...++.+.+.+.. |-.+-...+..+.+.|+.++|.++.....+.+..|-. ..| ...++++.++|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999877 8888888999999999999999999988766544421 234 55677789999999
Q ss_pred hHHHHHhhh
Q 001966 980 ESKDLMKQT 988 (989)
Q Consensus 980 ~a~~~~~~~ 988 (989)
.|.+.+..+
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 999887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-12 Score=89.81 Aligned_cols=50 Identities=46% Similarity=0.853 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSA 310 (989)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 310 (989)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55666666666666666666666666666666666666666666666553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-07 Score=91.75 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=114.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|+...|+.....+++. .+-|...+..-..+|...|++..|+.-++..-+....+......+...+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 3456666666666666664 244555555666666677777777766666666655666666667777777777777776
Q ss_pred HHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhc
Q 001966 774 LLDAMLEEQVNPNHDT----YTTL---------INQYCKVQNMEKAKQLFLEMQQRNLKPA--TI---TYRSLLNGYNRM 835 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~---~~~~l~~~~~~~ 835 (989)
..++-++. .||... |..+ +....+.++|.++++..+...+. .|. .. .+..+-.++...
T Consensus 245 ~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 245 EIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 66666653 444421 1111 11223455666666666666653 333 12 233344556666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
|++.+|+..-.++++ +.|++. ++..-+.+|.-...+++|+.-|+.+.+.+..
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 777777777777777 667644 6666667777777777777777777766543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=87.51 Aligned_cols=49 Identities=49% Similarity=0.953 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-08 Score=94.97 Aligned_cols=316 Identities=15% Similarity=0.136 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYN-VLI 690 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li 690 (989)
++.-.--+...+...|++..|+.-|...++-++. +-.++-.-...|...|+...|+.-+...++. +||-..-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3444445555666666666666666666554211 1222222233455566666666666666554 44433211 122
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
..+.++|.++.|..-|+..++.. |+..+- ..++.+.--.++ .......+..+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e---------------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQE---------------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHH---------------HHHHHHHHHHHhcCCchhh
Confidence 34555666666666666665542 111000 000000000000 0011112223344566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|+..+..+++.. +-|...+..-..+|...|++..|+.=++...+.. ..+..+...+...+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666666531 2255556666666666666666666555555432 33444555555566666666666666666666
Q ss_pred CCCCCCHHHHH----HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHH
Q 001966 851 KGIEPDNFTYY----VM---------IDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 851 ~g~~p~~~~~~----~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
++||..... .+ +....+.++|.++++..++..+..+... ...+..+-.++...|++.+|++.
T Consensus 252 --ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 --LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred --cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 666654211 11 1333455667777777777766554411 12233455556666777777777
Q ss_pred HHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 915 LNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++++..|+ |..++...+.+|.-...|+.|+.-|+++.+
T Consensus 330 C~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 330 CKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7777777666 677777777777777777777777777754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-09 Score=111.69 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=158.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEA 771 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 771 (989)
-+.+.|++.+|.-.|+...+.+ |-+...|.-|.......++-..|+..++++++..|.+..+...|+-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3567888999999999888875 667888999988888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 001966 772 HQLLDAMLEEQVNPNHDTYTTLI---------NQYCKVQNMEKAKQLFLEMQ-QRNLKPATITYRSLLNGYNRMGNRSEV 841 (989)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 841 (989)
+..+++.+...++ . .|.... ..+.....+.+..++|-++. ..+.++|+.++..|+-.|...|++++|
T Consensus 373 l~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999998764211 0 000000 00011111223333343333 334346667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+..|+.++. .+|++. .|+.|+-.+....+.++|+..|.++++..|. -..+++.|+-+|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 777777777 777555 6777777777777777777777777776543 345666777777777777777777777765
Q ss_pred CC
Q 001966 921 SG 922 (989)
Q Consensus 921 ~~ 922 (989)
..
T Consensus 527 mq 528 (579)
T KOG1125|consen 527 MQ 528 (579)
T ss_pred hh
Confidence 44
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=104.36 Aligned_cols=219 Identities=10% Similarity=0.011 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 001966 729 CKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM--EK 805 (989)
Q Consensus 729 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 805 (989)
...+..++|+.++.++++.+|.+..+|.....++...| .+++++..++++++...+ +..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 34466778888888888888877777777777777777 578888888888865332 445566555555556653 67
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc---CC----HHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE---GN----VMEAL 877 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~---g~----~~~A~ 877 (989)
++.+++++.+.. +-|..+|.....++...|+++++++.++++++ .+|.+. +|+....++.+. |. .++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 788888888743 44567888888888888888888888888888 667544 677766555544 22 35678
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC------------
Q 001966 878 KLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG------------ 941 (989)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 941 (989)
++.++++...|. |..+|..+...+.. .++..+|.+.+.++.+.+++ ++.++..|+++|....
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 888888887766 78888888888877 34567788888888877766 7888888888887643
Q ss_pred ------ChhHHHHHHHHH
Q 001966 942 ------VMDYAAKVLECM 953 (989)
Q Consensus 942 ------~~~~A~~~~~~~ 953 (989)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 235677778777
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=110.27 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=196.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
.-+.+.|+..+|.-.|+..+..+|.+..+|..|+......++-..|+..+++.++... .+......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3456789999999999999999999999999999999999999999999999998632 267888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-----HH---HHHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRS-----LL---NGYNRMGNRSEVFVVFEEMLG-KGIEPDNFTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~-----l~---~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A 876 (989)
|+++++..+... |....... .. ........+....++|-++.. .+..+|......|+-.|.-.|+++.|
T Consensus 372 Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999987632 21110000 00 011122234445555655554 55456777888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+..|+.++...|. |...|+.|+..+....+.++|+..|.++++..|. =..+++.||..|.+.|.|++|.+.|-.++..
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999998876 8999999999999999999999999999999877 5788999999999999999999999887653
Q ss_pred CC---cc------cchhHHHHHhhhhcCCChh
Q 001966 957 GW---VS------NSISLADIVKGENSGVDLD 979 (989)
Q Consensus 957 ~~---~p------~~~~~~~l~~~~~~~g~~~ 979 (989)
.- .+ +..+|-.|-..+...+..+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 22 12 2357877777776666666
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-07 Score=103.28 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=73.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 001966 728 CCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQN 802 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 802 (989)
+...|++++|.+.+++.++..|.+..++.. ...+.. .+..+.+.+.++.. ....|+ ......+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCC
Confidence 344555666666666655555544433332 212222 22333333333321 111222 2233344445556666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHH--HHHHHHHHHHhcCCHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DNF--TYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~--~~~~l~~~~~~~g~~~~A~ 877 (989)
+++|.+.+++..+.. +.+...+..++.++...|++++|..++++.++ ..| +.. .|..++..+...|++++|+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~--~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD--TWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh--ccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666532 22344555556666666666666666666655 222 211 2334555566666666666
Q ss_pred HHHHHHHh
Q 001966 878 KLKDLIFD 885 (989)
Q Consensus 878 ~~~~~~~~ 885 (989)
..++++..
T Consensus 207 ~~~~~~~~ 214 (355)
T cd05804 207 AIYDTHIA 214 (355)
T ss_pred HHHHHHhc
Confidence 66666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-07 Score=88.72 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 001966 545 SFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVL-INGL 623 (989)
Q Consensus 545 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~ 623 (989)
-+.+.+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-..++++... .|...-|... ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777788888999999888877664 336667788888888999999999999888764 5555555443 4567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001966 624 SKKLELREALGIFLELLEKGLVPDVDTYNSLITS--FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTE 701 (989)
Q Consensus 624 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 701 (989)
.+.+.+..|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7888888888888877653 222111111111 235677777777777665322 34444444444567888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 702 PFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 702 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
|.+-|+...+-+--.....|+..+. ..+.++++.|+++..+++++|.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 8888888877543334566665444 4466888888888888888876
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-09 Score=105.37 Aligned_cols=258 Identities=13% Similarity=0.065 Sum_probs=154.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|++..++.-.+ .....-..+.....-+.+++...|+++.++ .++.....|...+...++..+...++-+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 33566666665444 211111112233444556666677655433 33333333555555555555544445555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 774 LLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 774 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
-+++.......+ +..........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-- 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-- 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 555544332222 2333333445566778888888777642 3445556667788888888888888888887
Q ss_pred CCCCHHHHHHHH--HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 853 IEPDNFTYYVMI--DAHCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 853 ~~p~~~~~~~l~--~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
+..|.. ...++ +.....| .+.+|.-+|+++.+. ..+++.+++.++.+....|++++|.++++++++.++. ++.
T Consensus 160 ~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 160 IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 555554 22233 3333333 588899999998765 3457888888888889999999999999998888877 888
Q ss_pred hHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCcccchhHHHH
Q 001966 929 SCRTVANDFLREGVM-DYAAKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l 968 (989)
++..++.+..-.|+. +.+.+.+..+... .|+......+
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~~~~~ 275 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChHHHHH
Confidence 888888888888887 5677777777653 6665444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.2e-07 Score=97.35 Aligned_cols=200 Identities=11% Similarity=-0.041 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPAT--ITYRSLLN 830 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~ 830 (989)
....++..+...|++++|...+++.++.. +.+...+..+...+...|++++|+.++++...... .|+. ..|..++.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344455555666666666666655542 12334455555556666666666666665554211 1121 23445556
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC--CHH-HH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEP--DNF-TY-Y--VMIDAHCKEGNVMEALKL---KDLIFDKRM-PISAEAYKAIIK 900 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p--~~~-~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~ 900 (989)
.+...|++++|...++++.. ..| ... .. . .+...+...|..+.+.+. ......... ..........+.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA--PSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc--cccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 66666666666666666544 222 111 11 1 122223333332222222 111111000 111122235667
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCc--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 901 ALCKREEYSEALRLLNEMGESGFR--------LGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++...|+.++|...++.+...... .........+.++...|++++|.+.+..++..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888776543211 12344567888899999999999999888653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-07 Score=97.19 Aligned_cols=220 Identities=10% Similarity=0.074 Sum_probs=165.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH--H
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL--Q 769 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 769 (989)
+...++.++|+.+.+++++.+ |-+..+|+.....+...| ++++++..++++++.++.+..+|......+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 344567788888888888763 556677777767777777 578899999999988888878888777777777763 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HhHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM---GN----RSEVF 842 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~ 842 (989)
+++.+++++++... .+..+|......+...|++++|++.++++++.+ +-|..+|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 77888888887543 367788888888888899999999999998864 44566777777666554 22 25678
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKE----GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE----------- 906 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 906 (989)
.+..+++. +.|++. .|+.+..++... ++..+|.+.+.++.+.++. +..++..|++.|+...
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 88888888 889776 888888777763 4457799999998876655 7888999999998642
Q ss_pred -------CHHHHHHHHHHH
Q 001966 907 -------EYSEALRLLNEM 918 (989)
Q Consensus 907 -------~~~~A~~~~~~~ 918 (989)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777766
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-07 Score=86.14 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=97.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhc
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVN-LIYGFSAA 311 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~ 311 (989)
.++..+.+..++++|.+++..-.++.. .+....+.+..+|.+..++..|.+.++++... .|...-|.. -...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 344444455555555555555554421 24455555555555666666666666665543 223222222 12344555
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
+.+.+|..+...|.+.. ..-..+.-.-.......+++..+..+.++....| +..+.+.......+.|++++|.+-|
T Consensus 92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 66666666665554320 0001111111122344566666666666554321 3344444455555667777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 392 NEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 392 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
+...+-+-.....+||..+. ..+.|+++.|++...++.++|+
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 66665432333445554443 3356666777777666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=108.62 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=196.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 713 GVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTT 792 (989)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 792 (989)
+.+|-...-..+...+...|-...|+.++++. ..|..++.+|+..|+..+|..+..+.+++ +||+..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 45777777778888999999999999998876 58888999999999999999999988874 788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 871 (989)
+++......-+++|.++.+..... +-..++......++++++.+.++.-++ ++|- ..+|..++.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh
Confidence 998887777788998888776542 233334444557999999999999999 8884 459999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++.|.+.|...+...|. +.+.|+.+..+|.+.|+..+|...+.++++.+.+ +..+|.+........|.+++|.+.++
T Consensus 534 k~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999999988766 8999999999999999999999999999999855 78889898999999999999999999
Q ss_pred HHHhCCCcc-cchhHHHHHhh
Q 001966 952 CMASFGWVS-NSISLADIVKG 971 (989)
Q Consensus 952 ~~~~~~~~p-~~~~~~~l~~~ 971 (989)
++.+..... |+.....+...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhhhcccchhhHHHHHH
Confidence 987643222 44444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=106.64 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=188.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001966 678 GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757 (989)
Q Consensus 678 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (989)
+.+|--..-..+...+...|-..+|..+|++. ..|...+.+|+..|+..+|..+..+-++ .+++...|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 44555555567788899999999999999875 4588889999999999999999999988 6788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN 837 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 837 (989)
+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ +--..+|..++.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888888998888766532 22223333445799999999999988742 3456799999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
++.|.+.|...+. ..||.. .|+++..+|.+.|+..+|...++++.+.+.. +...|....-...+-|++++|++.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999999 899877 9999999999999999999999999998854 77888888888999999999999999
Q ss_pred HHHHCC
Q 001966 917 EMGESG 922 (989)
Q Consensus 917 ~~~~~~ 922 (989)
++.+..
T Consensus 612 rll~~~ 617 (777)
T KOG1128|consen 612 RLLDLR 617 (777)
T ss_pred HHHHhh
Confidence 988654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=0.00018 Score=80.36 Aligned_cols=106 Identities=12% Similarity=0.186 Sum_probs=59.0
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHH
Q 001966 274 CRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYG--FSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEE 351 (989)
Q Consensus 274 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 351 (989)
...+++.+|+...+++.++. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34566677777776666652 2322 2222222 34566666666666665555444 66666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 352 AFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 352 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
|..+++...+. .|+......+-.+|.+.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 66666666654 334444444445555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-08 Score=98.79 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=112.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---H
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-P-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T---I 823 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~ 823 (989)
.....+..++..+...|++++|...+++++..... | ....+..++.++.+.|++++|+..++++.+. .|+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34455666666677777777777777776654211 1 1134556666677777777777777777663 232 1 1
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 824 TYRSLLNGYNRM--------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 824 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
++..++.++... |+.++|.+.++++++ ..|+.. .+..+..... ..... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~~~--------------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRNRL--------------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHHHH--------------HHH
Confidence 445555555543 566667777776666 555543 2211111000 00000 011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFR-L-GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
...++..+.+.|++++|+..++++++..|+ | .+.++..++.++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235677788889999999999998887654 2 3578888999999999999998888877543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=91.72 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 842 FVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..++++.++ +.|+. +..++..+...|++++|...|++++..++. +..+|..++.++.+.|++++|+..|+++++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 66664 445667777788888888888888777655 7777888888888888888888888888887
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.|. ++.++..+|.++...|++++|+..++++++. .|+ ...+...+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQN 134 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 776 7788888888888888888888888877653 565 344444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-08 Score=92.63 Aligned_cols=147 Identities=10% Similarity=0.138 Sum_probs=113.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN 872 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 872 (989)
+..|...|+++......+.+.. |. . .+...++.+++...+++.++ .+|++. .|..++..+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777765444322211 11 0 11235677888888888888 777655 78888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCC--HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKAL-CKREE--YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
+++|+..|+++++..+. +...+..++.++ ...|+ .++|.++++++++.+|+ ++.++..+|..+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988766 888888888874 67777 58999999999999888 889999999999999999999999
Q ss_pred HHHHHhC
Q 001966 950 LECMASF 956 (989)
Q Consensus 950 ~~~~~~~ 956 (989)
++++++.
T Consensus 167 ~~~aL~l 173 (198)
T PRK10370 167 WQKVLDL 173 (198)
T ss_pred HHHHHhh
Confidence 9998765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-08 Score=100.09 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T---ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--- 858 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--- 858 (989)
....+..++..+...|++++|+..|+++... .|+ . .++..++.++...|++++|...++++++ ..|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchH
Confidence 3455666666677777777777777777663 232 1 3556666777777777777777777776 444332
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 859 -TYYVMIDAHCKE--------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 859 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++..++.++... |++++|++.++++++..+. +...+..+..... .... -...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~--------------~~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR--------------LAGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH--------------HHHH
Confidence 344455555543 5666777777777665443 3222222211100 0000 0111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMASFGWVSN----SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
...++..|...|++++|...++++++. .|+ ...++.++..+...|++++|...++.+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246788999999999999999999865 343 468899999999999999999998875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00024 Score=79.28 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=60.3
Q ss_pred HcCChHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChh
Q 001966 167 KIGLLDEAVDLFLCDTGCE-FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245 (989)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 245 (989)
..++|.+|+.-..++.+.- -.+...++.++ .+.+.|+.++|..+.+..-. ..+-|..|..++-.+|-..|+.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~----~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYG----LKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhcc----CCCCchHHHHHHHHHHHHHhhhh
Confidence 5567777777776665432 11222222222 23566777777744443322 23336666777777777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhH
Q 001966 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDE 281 (989)
Q Consensus 246 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 281 (989)
+|..+|++.... .|+......+..+|.|.+.|.+
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 777777776654 3555555555566666665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-08 Score=100.33 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=114.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHc
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCIS 765 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 765 (989)
.+.+++...|+++.++ .++.... +|.......+...+...++-+.++.-+++.+.... .+.......+..+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3444555555544322 2222222 34444443333333222344444444444333222 1222222333445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc--CCHhHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN--RM--GNRSEV 841 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~--g~~~~A 841 (989)
|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...++.++. .. +++++|
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence 6666666665432 2445555566677777777777777777765 33332 2222333221 22 257777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY-SEALRLLNEMGE 920 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 920 (989)
.-+|+++.+. ..++..+.+.++.++...|++++|.+.++++++.++. ++.++..++-+....|+. +.+.+++.++.+
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7777776652 2344556666667777777777777777777766654 666777777766777766 556667776666
Q ss_pred CCCc
Q 001966 921 SGFR 924 (989)
Q Consensus 921 ~~~~ 924 (989)
..|.
T Consensus 265 ~~p~ 268 (290)
T PF04733_consen 265 SNPN 268 (290)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 6655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=89.37 Aligned_cols=123 Identities=10% Similarity=0.019 Sum_probs=99.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.++++..+ +.|+. +..++..+...|++++|...|++++. +.|+.. .+..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 44553 55677788889999999999999988 778655 7888888999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
++. ++.++..++.++...|++++|+..++++++..|+ ++..+...+.+..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 765 8889999999999999999999999999998877 7777766665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-06 Score=102.55 Aligned_cols=232 Identities=14% Similarity=0.057 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC----C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGL----A--STLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVN--P-NHDTY 790 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~ 790 (989)
+...+...|++++|...+++...... + ...+...++..+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 33444445555555555555543211 0 1122333444555555555555555554421 110 0 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHH-----
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQR--NLKPA--TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFTY----- 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~----- 860 (989)
..+...+...|++++|...+++.... ...+. ...+..++..+...|+.++|...+.++... ........+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 33344444556666665555554331 01111 223333444555556666666555555431 000000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc----c-CHHhHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFR----L-GFASCRT 932 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~ 932 (989)
......+...|+.+.|.+.+........... ...+..++.++...|++++|...++++++.... . ...++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 0011222335556666555544433211100 011234555555666666666666655443100 0 1234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 001966 933 VANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++.++...|+.++|...+.++++
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=89.24 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..+...+...|+-+.+..+..+... ..|.. .....++....+.|++.+|+..+.++....++ |.+.|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 4444455555555555555555433 22322 23333455555555555555555555555433 55555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKD 983 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 983 (989)
.|+.++|..-|.++++..+. ++.+.++++..|.-.|+++.|..++.+.... .+ |..+-.+++.....+|+..+|++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 55555555555555555555 5555555555555555555555555555432 22 34445555555555555555554
Q ss_pred H
Q 001966 984 L 984 (989)
Q Consensus 984 ~ 984 (989)
+
T Consensus 224 i 224 (257)
T COG5010 224 I 224 (257)
T ss_pred h
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=106.77 Aligned_cols=132 Identities=10% Similarity=0.027 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
+...+..|.....+.|++++|..+++...+ +.|+ ......++.++.+.+++++|+..+++.+. ..|++. ....+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 344455555555555555555555555554 3343 22444455555555555555555555555 445444 33334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.++.+.|++++|..+|+++...++. +..++..++.++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45555555555555555555543322 34555555555555555555555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-06 Score=104.46 Aligned_cols=298 Identities=11% Similarity=-0.022 Sum_probs=194.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----hhhHH
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRG--V----PLD--GSVYNALLSGCCKEEKLEQALELFRDMLEKGL-AS----TLSFN 756 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~ 756 (989)
...+...|++++|..++......- . .+. ......+...+...|++++|...+++..+..+ .+ ..+..
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 334455667777777666654320 0 011 11112233445678889999999888876433 22 13445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHH
Q 001966 757 TLIEFLCISNKLQEAHQLLDAMLEEQ--V-NP--NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR----NLK--P-ATIT 824 (989)
Q Consensus 757 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~ 824 (989)
.++..+...|++++|...+++..... . .+ ....+..+...+...|++++|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 67777889999999999999887421 1 11 1234556677888999999999998887652 211 1 2234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHH---
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGK--GIEPDN--FTYYVMIDAHCKEGNVMEALKLKDLIFDKRM--PISAEAY--- 895 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~--- 895 (989)
+..++..+...|++++|...+++.+.. ...+.. ..+..++..+...|++++|.+.++++..... .......
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 556677788889999999999998762 122322 2444567888899999999999998865311 1111111
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCccc-chhHH
Q 001966 896 -KAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVANDFLREGVMDYAAKVLECMASF----GWVSN-SISLA 966 (989)
Q Consensus 896 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 966 (989)
......+...|+.++|...+........... ...+..++.++...|++++|...++++.+. |..++ .....
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1122445568999999999877554322211 112467889999999999999999988753 33333 34567
Q ss_pred HHHhhhhcCCChhhHHHHHhh
Q 001966 967 DIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 967 ~l~~~~~~~g~~~~a~~~~~~ 987 (989)
.++..+...|+.++|.+.+.+
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 788889999999999988875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00025 Score=74.54 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001966 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKI---CDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLF 706 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 706 (989)
+++.++++..++.-..-+..+|..+.+---.. ...+.....+++++..-...-..+|..+++...+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 45555555554432233444555444322111 125556666776665432333457788888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 707 DEMTKRGVPL-DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 707 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
.++.+.+..+ +..+.++++.-+| .++.+-|..+|+--+.+...++.-....++.+...|+-..|..+|++++..+..|
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9999887666 6777888887776 5788999999999988877777777788888899999999999999999876555
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 786 N--HDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 786 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
+ ...|..++..-..-|+.+.++++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4 37889999888889999988888777655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.5e-07 Score=102.08 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=187.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP-----NHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
..+=|++.+...|.+...|...+....+.++.++|+++.++++.. +.+ -...|.++++.....|.-+...+.|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345566677777777778888888888999999999999998854 222 12468888888888888888889999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 001966 812 EMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-I 890 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 890 (989)
+..+. -.....|..|...|.+.+++++|.++++.|+++ ..-....|...+..+.++.+-++|..+++++++.-|. .
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 98873 344557889999999999999999999999984 2234558888889999999999999999999886333 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 969 (989)
+.+.....+..-++.|+.+.+..+|+..+...|+ -...|+.+++.-.++|+.+.++.+|+++...++.| ...+++.--
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 4566777788889999999999999999999888 78889999999999999999999999999999988 465554433
Q ss_pred hhh-hcCCChh
Q 001966 970 KGE-NSGVDLD 979 (989)
Q Consensus 970 ~~~-~~~g~~~ 979 (989)
-.| ..-|+-.
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 333 3434443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=83.85 Aligned_cols=171 Identities=9% Similarity=0.064 Sum_probs=106.8
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
+-......|.+..+ ..+...+...|+-+.+..+..+.... ...|......++....+.|++.+|+..|++..... ++
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~ 132 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT 132 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC
Confidence 33333444444444 55556666666666666666654432 12244455556666677777777777777776632 55
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
|..+|+.++.+|.+.|++++|...|.+.++ +.|+.. .+++++..+.-.|+++.|..++......+.. +..+-..++
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLA 209 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLA 209 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence 566777777777777777777777777777 555433 5666666666677777777777776655433 666666666
Q ss_pred HHHHccCCHHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNE 917 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~ 917 (989)
.+....|++++|.++..+
T Consensus 210 l~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHhhcCChHHHHhhccc
Confidence 677777777777766654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-07 Score=86.24 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=117.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS 839 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 839 (989)
-.|...|+++.+....+.+.. |. ..+...++.++++..+++..+.+ +.|...|..++..|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 457778887776544433321 11 01223667788888888887753 667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TYYVMIDAH-CKEGN--VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+|...|+++++ +.|++. .+..++.++ ...|+ .++|.++++++++.++. +..++..++..+.+.|++++|+..|
T Consensus 91 ~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 888665 777777764 67777 59999999999999877 8899999999999999999999999
Q ss_pred HHHHHCCCc
Q 001966 916 NEMGESGFR 924 (989)
Q Consensus 916 ~~~~~~~~~ 924 (989)
+++++..|.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 999988766
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=84.86 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=96.6
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+.++++++ ..|+.. ....++..+...|++++|.+.++++.+.++. +...|..++.++...|++++|...++++++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777 777654 5666778888899999999999999887755 8888999999999999999999999999888
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.|+ ++..+..++.+|...|++++|.+.++++++. .|+...
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 877 7888899999999999999999999988764 676544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.2e-07 Score=101.67 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK 896 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 896 (989)
.+.+...+..|+......|++++|..+++..++ +.||.. ....++.++.+.+++++|+..++++++..+. +...+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 566788999999999999999999999999999 999888 6777889999999999999999999999877 999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.++.++.+.|++++|..+|++++..+|+ ++.++..++..+...|+.++|...|+++.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999997776 7999999999999999999999999999764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-08 Score=65.20 Aligned_cols=32 Identities=56% Similarity=1.054 Sum_probs=18.7
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 001966 258 GCRPNVATYNVVIGGLCRVGFVDEAVELKNSM 289 (989)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 289 (989)
|+.||++|||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=99.48 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH------------------HHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL------------------LDAM 778 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------------------~~~~ 778 (989)
+...+..|+..+...+++++|.++.+..++..|.....+..++..+.+.+++.++..+ +..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 3444455555555555555555555555555544444444444444444444333332 2222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 779 LEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.+. ..+...+..++.+|-+.|+.++|...++++++.. +.|+.+.+.++..|... ++++|..++.+++.
T Consensus 110 ~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 110 LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 221 1122234444444555555555555555554432 22344444455444444 55555555544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-06 Score=88.02 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 871 (989)
..-.+...|.+++|+..++.+... .+.|...+......+.+.|+.++|.+.+++++. ..|+.. ....++.++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 334455778899999999998874 344566667777888999999999999999998 888755 6667789999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++++|+++++......+. ++..|..|+++|..+|+..+|..... ..|.-.|++++|+..+.
T Consensus 389 ~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 999999999998887766 88999999999999998888776554 35566789999999988
Q ss_pred HHHhCCCcccchhHHHHH
Q 001966 952 CMASFGWVSNSISLADIV 969 (989)
Q Consensus 952 ~~~~~~~~p~~~~~~~l~ 969 (989)
.+.+. .+++...|...-
T Consensus 450 ~A~~~-~~~~~~~~aR~d 466 (484)
T COG4783 450 RASQQ-VKLGFPDWARAD 466 (484)
T ss_pred HHHHh-ccCCcHHHHHHH
Confidence 88764 456666664433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-05 Score=76.40 Aligned_cols=201 Identities=9% Similarity=0.060 Sum_probs=140.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-----CCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 730 KEEKLEQALELFRDMLEKGL-----AST-LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
...+.++.++++.+++.... ++. ..+..+.-+....|+.+-|...++.+... ++.+..+-..-+..+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 34577888888888875322 222 24445566667788888888888887764 222222222223335567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
++|+++++.+.+.+ +-|.+++..-+......|+.-+|++.+.+.++. ..-|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888764 556677777777777788888888888888873 3346678888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 884 FDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
+-..|. ++..+..+++.+.-.| +.+-|.++|.++++..++ +..+++.+-.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI~l 233 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGIYL 233 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHHHH
Confidence 876544 6667777777766554 677888888888888765 6665554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-06 Score=86.06 Aligned_cols=277 Identities=13% Similarity=0.024 Sum_probs=134.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 655 ITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL 734 (989)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 734 (989)
...+.+..++..|+..+...++.... +..-|..-+..+...|++++|..-.+.-.+.. +-..........++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 44555666666666666666665322 34444444445555566666655554443321 11222333344444444444
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 001966 735 EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPNHDTYTTL-INQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~ 812 (989)
.+|.+.++... ++ ....|+..++.+..... +|....|..+ ..++.-.|++++|...-..
T Consensus 134 i~A~~~~~~~~--------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 134 IEAEEKLKSKQ--------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHHhhhhh--------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444444111 00 01112222222221111 1223333333 2234455666666655555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHhcCCHHHHHHH
Q 001966 813 MQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-------------MIDAHCKEGNVMEALKL 879 (989)
Q Consensus 813 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-------------l~~~~~~~g~~~~A~~~ 879 (989)
..+.. .-+......-..++.-.++.+.|...|++.+. +.|+....-. -++-..+.|++.+|.+.
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 54421 11122222222333445566666666666666 5555432111 12444556666666666
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 880 KDLIFDKRM---PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 880 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
|.+++..+| .++...|...+.+..+.|+..+|+.--+.+++.++. =..++..-+.++...++|++|.+-++++.+.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666665533 234445555666666666666666666666666544 3455566666666666666666666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=63.03 Aligned_cols=32 Identities=44% Similarity=0.956 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001966 363 GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI 394 (989)
Q Consensus 363 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 394 (989)
|+.||+++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-05 Score=69.95 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 698 DLTEPFQLFDEMTK---RG-VPLDGS-VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 698 ~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
+.++..+++.++.. .| ..++.. .|..+.-+....|+.+.|...++.+...-|.+......-+..+...|++++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555554432 12 223332 23334444455677777777777777666545444444455566677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
++++.+++.. +.|..++..-+...-.+|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.+++++-
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-- 182 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-- 182 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--
Confidence 8888877654 335566666666677777777888877777764 577788888888888888888888888888887
Q ss_pred CCCCHHH-HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 853 IEPDNFT-YYVMIDAHCKEG---NVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 853 ~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
+.|-+.. +..+++.+.-.| +.+-|.++|.++++..+. +...+..+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence 7786664 344555555444 466788888888877653 55555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-05 Score=90.48 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEK-GLVP---DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYN 687 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (989)
+...|-..+..+...++.++|.+++++++.. ++.- -.-.|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4455666666666666666666666665543 1111 1123444444444445455555555555543 11234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHc
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA--STLSFNTLIEFLCIS 765 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 765 (989)
.|...|.+.+.+++|.++++.|.++ +......|...+..+.++++-+.|..++.++++.-|. ........++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5555555556666666666666554 3344555555555555555555555555555554441 233334444445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
|+.+++..+|+..+... +.-...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555555432 1133455555555555555555555555555544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=83.18 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNG 831 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 831 (989)
....-.+..+...|.+++|+..++.++... +-|+..+......+.+.++.++|.+.++++.. ..|+ ...+..++.+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHH
Confidence 344444555556666666666666665441 22455555556666666666666666666665 3444 4455666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+.+.|++.+|+.+++.... -.|++. .|..|+.+|...|+..+|...+-+ .|.-.|++++
T Consensus 384 ll~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~ 443 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQ 443 (484)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHH
Confidence 6666666666666666665 445333 666666666666666665544432 3444566666
Q ss_pred HHHHHHHHHHCC
Q 001966 911 ALRLLNEMGESG 922 (989)
Q Consensus 911 A~~~~~~~~~~~ 922 (989)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 666666655543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-06 Score=81.90 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=86.1
Q ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 717 DGSVYNALL-SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 717 ~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
....|..+- .++...|++++|...--..++....+..+...-..++.-.++.+.|...|++.+.. .|+......+-.
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~ 244 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASM 244 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhh
Confidence 334444332 23345677777777777777766656555555555666667777777777777654 333322111100
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhc
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-----TYYVMIDAHCKE 870 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~ 870 (989)
. .+.++.+.+. ++-..+.|++.+|.+.|.+.+. ++|++. .|...+....+.
T Consensus 245 ~----------~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 245 M----------PKKLEVKKER------------GNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred h----------HHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhccc
Confidence 0 0111111111 1223345555555555555554 444332 233333444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|+.++|+.--+.++..+.. -..+|..-+.++...++|++|.+-++++.+.
T Consensus 301 grl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555544322 2333444444455555555555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.8e-07 Score=78.35 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=89.2
Q ss_pred CC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 853 IE-PDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 853 ~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
+. ++. ...+.++..+...|++++|.++|+-+...++. +...|..|+-++...|++++|+..|..+....|+ |+..+
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 45 433 36777788888999999999999999988866 8889999999999999999999999999999988 99999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 931 RTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.++|.++...|+.+.|++.|+.++..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-05 Score=72.07 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQL-LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
.+...+.......++.+.-+.- .+.+.......+......-+..|+..|++++|++..+... +......-...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 3333344434334443333332 3333333233333333344456677777777777766521 12222222344
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.+..+++-|...+++|.+ +. +..+...|+.++.+ .+...+|.-+|+++-++ .+|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 5566677777777777776 33 33355555544332 34577788888888765 34577777778878888888
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHH-HHHHHHHHhCCCcccchhHHHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYA-AKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~l 968 (989)
+++|..+++.++.+.++ ++.++.+++..-.-.|+-.++ .+.+..++. ..|+.....++
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~ 281 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHL 281 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHH
Confidence 88888888888887777 777777777766666665444 444444432 35665554444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=91.02 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=155.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (989)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5667888999998999999999999977766 3433 3333444466666665555444 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
.......++ .+.+.+...+..-+.+..++..++.+|-+.|+.++|...++++++.. +.+..+.|.++..|... +.++
T Consensus 91 ~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333444445 33333333333334455688889999999999999999999998875 33778888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY-YVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
|++++.+.... +....++..+.+++.++++ ..|+...+ ..+.......-.+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc-----------
Confidence 99888887762 5556678888888888888 66665432 2222211111011
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.--...+.-+...|.+.+++++++.+++.+++..++ +..+...++.+|.
T Consensus 220 ----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 ----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 112234444555566667777777777777777766 7777777777766
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.2e-05 Score=70.68 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR--- 834 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 834 (989)
-+..|+..|++++|+....... +....-.-+..+.+..+++-|.+.+++|++ -.+..|.+.|+.++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhc
Confidence 3455667777777776665521 222222223445566677777777777775 2344455556655543
Q ss_pred -cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH-H
Q 001966 835 -MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA-L 912 (989)
Q Consensus 835 -~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~ 912 (989)
.++..+|.-+|++|-++ ..|+..+.+-.+.++...|++++|..++++++.+... +++++..++-+-...|+..++ .
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 33577777777777663 4556666666677777777777777777777777655 677777766666666655443 4
Q ss_pred HHHHHHHHCCCc
Q 001966 913 RLLNEMGESGFR 924 (989)
Q Consensus 913 ~~~~~~~~~~~~ 924 (989)
+.+.++....|+
T Consensus 263 r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCCc
Confidence 445555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0029 Score=66.83 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ---NMEKAKQLFLEMQQRN-LKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
-+++..++++.++.-..-+..+|..+...--..- ..+.....++++...- +.| ..+|..+++.-.+..-...|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 3555666666554322223344444433221111 2445555666655431 223 3456677777777777788888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 844 VFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 844 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|.++.+.+..+ +...+..++.-+ -.++.+.|.++|+.-+++-.. +++.-...++-+...|+-..|..+|++++...
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 888887765555 333555555533 367788888888877765322 45555566777778888888888888887773
Q ss_pred --CccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 923 --FRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 923 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
++-...+|...+.--.+-|+...+.++-+++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22235677777777777788877777766654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=75.65 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=81.1
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 809 LFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 809 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.+++... ..|+ ......++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|...++++++.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554 3343 34566677777788888888888888877 566444 6667778888888888888888888777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. +...+..++.++...|++++|...++++++..|+
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 644 6777788888888888888888888888877755
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0011 Score=66.93 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 649 DTYNSLITSFCK--ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDG--FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 649 ~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
..|..|-.++.. .|+-..|.++-.+..+. +..|....--++.+ -.-.|+++.|.+-|+.|...- ..-..-...|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgL 160 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGL 160 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHH
Confidence 346666666543 46777777766554432 22344333333332 334688888888888888530 1111122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH--HHHHHH---H
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYT--TLINQY---C 798 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~---~ 798 (989)
.-.-.+.|..+.|..+-+...+.-+.-..++...+...|..|+++.|+++++.-.+. -+.++..--. .|+.+- .
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 333346788888888888888887777778888888888888888888888876643 2344442221 222221 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 877 (989)
-..+...|...-.+..+ +.||.+ .-..-..++.+.|+..++-.+++.+-+ ..|....+... .+.+.|+.-...
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK--~ePHP~ia~lY--~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK--AEPHPDIALLY--VRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh--cCCChHHHHHH--HHhcCCCcHHHH
Confidence 12345556665555555 566644 334455677788888888888888877 55555443322 234555533222
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 001966 878 -KLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDYAAKVLECMAS 955 (989)
Q Consensus 878 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 955 (989)
+=.+++....++ +.+....++.+....|++..|..-.+.+.... |...+|..++++-... |+-.+++.++-+.++
T Consensus 315 lkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 112222233333 66777777888888888888888777777665 3466777788876665 888888888877776
Q ss_pred C
Q 001966 956 F 956 (989)
Q Consensus 956 ~ 956 (989)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=84.58 Aligned_cols=134 Identities=17% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.-+.+.+++++|+..|.++++ +.|.+.+|+. -+.+|.+.|.++.|++-.+.++..++. ...+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 4445666677777777777776 6666554443 456677777777777777777666544 55667777777777777
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCcccchhHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD---YAAKVLECMASFGWVSNSISLA 966 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~ 966 (989)
+++|++.|+++++..|+ +......|-.+-.+.+.-. .+....+.....|..||....+
T Consensus 165 ~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~ 225 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMF 225 (304)
T ss_pred HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhh
Confidence 77777777777766665 5544455554444444433 3333344333344335544433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-06 Score=74.67 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=83.6
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCC
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREE 907 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 907 (989)
..++...+...++.+.+ -.|+. .....++..+...|++++|...|+.+.+..+.+. ..+...++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~--~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK--DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 36777888888888877 34443 2444466888888888888888888887653332 2356677888888888
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+++|+..++..... ...+..+..+|++|.+.|++++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888888663222 235667788888888888888888888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-05 Score=69.52 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-ISAEAY 895 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 895 (989)
+-|+...-..|+.++...|+..||...|++.+. |+-- |......+.++....+++.+|...++++.+.++. -++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 445555555556666666666666666666554 3332 3334555556666666666666666666554321 122233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
..+++.|...|++++|+..|+.++..-| ++.....++..+.++|+..+|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4455556666666666666666555542 3444444555555666555555544444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=84.42 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.++..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|+.++++.++ ..|... .+..-+..+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 3444444455555555555555543 2332 22344444455555555555555554 334222 333333445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
++++.|+++.+++++..|. +...|..|+.+|.+.|++++|+..++.
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555555555433 445555555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6e-06 Score=80.41 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.-.+-+.+.++|++|+..|.+.++.. +-|.+.|..-+.+|.+.|.++.|++-.+..+. ++|... +|..|+.+|...
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHcc
Confidence 34666778899999999999999842 34577788889999999999999999999999 889766 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHHCC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS---EALRLLNEMGESG 922 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~ 922 (989)
|++++|++.|+++++.+|. +...+..|-.+-.+.++.. .+...++-....+
T Consensus 163 gk~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig 216 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG 216 (304)
T ss_pred CcHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence 9999999999999987655 5555556655555555444 4444444433333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.9e-07 Score=72.09 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMP-ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
.|++++|+.+++++++..+. ++...+..++.+|.+.|++++|+.++++ .+.++. ++.....+|.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765442 2445555667777777777777777766 333333 44555566777777777777777
Q ss_pred HHHH
Q 001966 949 VLEC 952 (989)
Q Consensus 949 ~~~~ 952 (989)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-05 Score=72.40 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC--HHhHHHHHHHHHhcCChh
Q 001966 869 KEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG--FASCRTVANDFLREGVMD 944 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 944 (989)
..++...+.+.++.+.+..+.- ...+...++..+...|++++|...|+++++..+++. +.+...|+.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5889999999999999875542 134566788999999999999999999999875543 456788999999999999
Q ss_pred HHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 945 YAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+|...++...... ..+..+...++++...|++++|...+++
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999997653321 2355778899999999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0082 Score=60.83 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=146.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 001966 615 TYSVLINGLSK--KLELREALGIFLELLEKGLVPDVDTYNSLITS--FCKICDVDKAFQLYEEMCEKGVEPNTL--TYNV 688 (989)
Q Consensus 615 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 688 (989)
-|..|-.++.. .|+-..|.+.-.+.... +..|......++.+ -.-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555554443 44555665555443321 12233333333333 23357777777777777642 1111 1112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChh--hHHHHHHH--H
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTL--SFNTLIEF--L 762 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~l~~~--~ 762 (989)
|.-.-.+.|+.+.|..+-+.....- +.-...+.+.+...|..|+|+.|+++.+....... ++.. .-..|+.+ .
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222234666666666666665542 33445566666666777777777777766655443 1111 11111111 1
Q ss_pred HH-cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 001966 763 CI-SNKLQEAHQLLDAMLEEQVNPNHD-TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSE 840 (989)
Q Consensus 763 ~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 840 (989)
.. ..+...|...-.+..+ +.||.. .-......+.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCC--c
Confidence 11 1234444444444333 234331 2223345566777777777777776663 344333222 12233333 2
Q ss_pred HHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHH
Q 001966 841 VFVVFEEMLG-KGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-EEYSEALRLLNE 917 (989)
Q Consensus 841 A~~~~~~~~~-~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 917 (989)
+..-+++... ..+.|++. +...+..+....|++..|..--+.+... .|....|..|++.-... ||-.++...+.+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3333333322 12556554 5555556666677777666666655543 34556666666665444 777777777776
Q ss_pred HHHCCCcc
Q 001966 918 MGESGFRL 925 (989)
Q Consensus 918 ~~~~~~~~ 925 (989)
.+...-+|
T Consensus 389 av~APrdP 396 (531)
T COG3898 389 AVKAPRDP 396 (531)
T ss_pred HhcCCCCC
Confidence 66654443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-05 Score=73.91 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
+..++..+...|++++|+..++++++..+.+. ...+..++.++.+.|++++|+..++++++..|. +...+..++.+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33444444445555555555555544322211 234445555555555555555555555554444 444444455555
Q ss_pred HhcCC--------------hhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCC
Q 001966 938 LREGV--------------MDYAAKVLECMASFGWVSNSISLADIVKGENSGVD 977 (989)
Q Consensus 938 ~~~g~--------------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 977 (989)
...|+ +++|.+.++++... .|+. +..+...+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 44444 46677777766542 4443 5555655555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-05 Score=82.18 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
.-.+|+..+...++++.|+.+++++.+ ..|+.. ..++..+...++-.+|+++++++++..+. +...+...+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~--~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE--RDPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh--cCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345566777788999999999999998 567644 44677787888999999999999987655 8888988999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.++++.|+++.+++.+..|. +..+|..|+.+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999988 89999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-06 Score=82.28 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=157.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHH
Q 001966 657 SFCKICDVDKAFQLYEEMCEKGVEPNT----LTYNVLIDGFCKAGDLTEPFQLFDEMT--KR--GV-PLDGSVYNALLSG 727 (989)
Q Consensus 657 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~--~~--~~-~~~~~~~~~l~~~ 727 (989)
-+|+.|+......+|+..++.|.. |. .+|..|.++|.-.+++++|+++...=+ .+ |- --....-..|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 378888888888888888887643 33 345666667777777888777543211 10 10 0012222334444
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 728 CCKEEKLEQALELFRDMLE----KGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ 801 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 801 (989)
+--.|.+++|+....+-+. .|- ....++..++..|...|+--... .-.+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------H
Confidence 5555666666655443332 121 23344555555555444311000 0000011111110 1
Q ss_pred CHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcC
Q 001966 802 NMEKAKQLFLEMQQ----RNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEP-DNFTYYVMIDAHCKEG 871 (989)
Q Consensus 802 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g 871 (989)
.++.|.++|.+-++ .|-. .-...|..|...|.-.|+++.|+..-+.-++ .|-.. .-..+..+++++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 13334444433222 1100 0123566777777778888888877655433 23222 2236777888888888
Q ss_pred CHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHhHHHHHHHHHhcC
Q 001966 872 NVMEALKLKDLIFD----KRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFASCRTVANDFLREG 941 (989)
Q Consensus 872 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g 941 (989)
+++.|.+.|+..+. .|- .......+.|+..|.-..+++.|+.+..+=+....+ ....+++.|+.+|-..|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 88888888877653 221 223455667888888888888888887764432211 13667888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 001966 942 VMDYAAKVLECMASF 956 (989)
Q Consensus 942 ~~~~A~~~~~~~~~~ 956 (989)
.-++|....+..++.
T Consensus 330 ~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 330 EHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888887777665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-05 Score=68.58 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVA 934 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 934 (989)
++..++..+.+.|++++|.+.++++++..+. ....++..++.++.+.|++++|...+++++...|.. .+.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556666777777777777777777765432 124566677777777888888888887777765442 255677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 935 NDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.++...|++++|.+.++++++. .|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 7788888888888888777654 4543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=83.79 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..+...|++++|+..|+++++ ..|+.. .+..++.++...|++++|+..++++++.++. +..+|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 345556677777777777777777 666544 6666677777777777777777777777654 677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
|++++|+..++++++..|. ++.....+..+
T Consensus 84 g~~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 7777777777777777766 55555544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=82.74 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 871 (989)
.+..+...|++++|+++|++.++.. +.+...|..++.+|...|++++|+..++++++ +.|+.. .|..++.++...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3455667778888888888877742 33456777777778888888888888888877 677544 6677777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
++++|+..|+++++.++. +..+...+..
T Consensus 85 ~~~eA~~~~~~al~l~P~-~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG-DSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 888888888888777654 5555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=69.02 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
.....++..+...|++++|..+|+-+.. ++|.+. -|..|+-++-..|++++|+..|..+...++. ++..+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3455666777888999999999998888 788666 6777888888889999999999999888865 88888889999
Q ss_pred HHccCCHHHHHHHHHHHHHCC
Q 001966 902 LCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998887654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-05 Score=65.54 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++..+...|++++|+..++++.+..+. +...+..++.++...|++++|.+.++++++..+. +..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445556666677777777777777665433 4466666777777777777777777777776655 55667777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 001966 940 EGVMDYAAKVLECMAS 955 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~ 955 (989)
.|++++|...++++.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-05 Score=72.20 Aligned_cols=94 Identities=17% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
.+..++..+...|++++|+..+++++...+.+ ...+|..++.++...|++++|+..++++++..|. ....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 55666677777788888888888887654332 2346778888888888888888888888877665 56667777777
Q ss_pred HH-------hcCChhHHHHHHHHH
Q 001966 937 FL-------REGVMDYAAKVLECM 953 (989)
Q Consensus 937 ~~-------~~g~~~~A~~~~~~~ 953 (989)
+. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 77 777777555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-05 Score=66.78 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKA 897 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 897 (989)
++..++..+...|++++|...++++++ ..|+. ..+..++.++.+.|++++|+..++++....+.. ...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 456666777777888888888887776 34442 355667777888888888888888877654331 2566777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++.+.|+.++|...++++++..|+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 778888888888888888888877765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=72.07 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNE 917 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 917 (989)
..-++.-+. .+|++ ..|..|+.+|...|+++.|...|.++.+..++ +++.+..++.++..+. ...++..++++
T Consensus 142 ~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 142 IARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 333444444 56754 48999999999999999999999999988655 8888888888876543 47888999999
Q ss_pred HHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 918 MGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 918 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++..+|. |..+...|+..+...|++.+|...++.|++.
T Consensus 219 al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9998888 8899999999999999999999999999765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.1e-05 Score=67.00 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
..+..+.-+...|++++|..+|+-+.-.++. +...|..|+.++...+++++|+..|..+....++ ||...+..|.+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHH
Confidence 4555566677899999999999988887766 7888999999999999999999999998888776 8888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 939 REGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
..|+.+.|+..|+.+++ .|....+..
T Consensus 117 ~l~~~~~A~~~f~~a~~---~~~~~~l~~ 142 (165)
T PRK15331 117 LMRKAAKARQCFELVNE---RTEDESLRA 142 (165)
T ss_pred HhCCHHHHHHHHHHHHh---CcchHHHHH
Confidence 99999999999998876 455444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.7e-06 Score=66.49 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=51.2
Q ss_pred cCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 835 MGNRSEVFVVFEEMLGKGIEP---DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
.|++++|+.+++++++ ..| +...+..++.++.+.|++++|+.++++ .+.++. +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777777 444 233455567777777777777777777 333332 445555667777777777777
Q ss_pred HHHHHH
Q 001966 912 LRLLNE 917 (989)
Q Consensus 912 ~~~~~~ 917 (989)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.4e-05 Score=63.50 Aligned_cols=95 Identities=29% Similarity=0.356 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|.+.++++.+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 44556666667777777777777776 45544 35666667777777777777777777766544 4566777777777
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 001966 904 KREEYSEALRLLNEMGESG 922 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~ 922 (989)
..|++++|...+.++.+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 7777777777777766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.9e-05 Score=78.09 Aligned_cols=279 Identities=15% Similarity=0.099 Sum_probs=158.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH--c----CCCChhhHHHHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLE--K----GLASTLSFNTLIEF 761 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~~~~l~~~ 761 (989)
-+|+.|+......+|+..++.|. .|. .+|..|..+|.-.+++++|+++...-+. + ......+...|+..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 36777777777777777777652 232 3455555666666666666665433221 1 11222333445555
Q ss_pred HHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 762 LCISNKLQEAHQLLDAMLE----EQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG 836 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 836 (989)
+--.|.+++|+-...+-+. .|-. .....+..+.+.|...|+--.-. .-.+.|-.|+.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------H
Confidence 5555666666554443321 1100 01122333444444333211000 0000111111111 1
Q ss_pred CHhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHccC
Q 001966 837 NRSEVFVVFEEMLG----KGIE-PDNFTYYVMIDAHCKEGNVMEALKLKDLIFD----KRMP-ISAEAYKAIIKALCKRE 906 (989)
Q Consensus 837 ~~~~A~~~~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g 906 (989)
.++.|.++|.+=++ .|-. ..-..|..|++.|.-.|+++.|+..-+.=++ .|-. ....++..++.++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 13444555544333 1111 1122577788888889999999987655433 2211 12356888999999999
Q ss_pred CHHHHHHHHHHHHH----CCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-cccchhHHHHHhhhhcCC
Q 001966 907 EYSEALRLLNEMGE----SGFR-LGFASCRTVANDFLREGVMDYAAKVLECMAS----FGW-VSNSISLADIVKGENSGV 976 (989)
Q Consensus 907 ~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g 976 (989)
+++.|.+.|+..+. .+.. ......+.|++.|.-..+++.|+.+..+=+. .+- .-....++.|++++..-|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999988653 3322 2466789999999999999999998876432 111 123567899999999999
Q ss_pred ChhhHHHHHh
Q 001966 977 DLDESKDLMK 986 (989)
Q Consensus 977 ~~~~a~~~~~ 986 (989)
..++|..+.+
T Consensus 330 ~h~kAl~fae 339 (639)
T KOG1130|consen 330 EHRKALYFAE 339 (639)
T ss_pred hHHHHHHHHH
Confidence 9999987765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.029 Score=58.38 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 001966 512 NSLIIGLCKAKRMDEARIYLVEMLRRG----LKPNIHSFRAFILGYC 554 (989)
Q Consensus 512 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~ 554 (989)
+..+.++...|++.+++.+++++...= ..-+..+|+.++-.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 445666777888888888877776542 3356777777655554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-05 Score=59.97 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++..+.+.|++++|+..|+++++..|+ ++.++..+|.++...|++++|...++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554 555555555555555555555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00028 Score=67.15 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|+..++++++..+. +...+..++.++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444444445555555555555544111111 123444445555555555555555555544333 344444445455
Q ss_pred HccCC--------------HHHHHHHHHHHHHCCCc
Q 001966 903 CKREE--------------YSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g~--------------~~~A~~~~~~~~~~~~~ 924 (989)
...|+ +++|.+.+++++...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 44444 56777777777766544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=60.76 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG-VMDYAAKVLECMAS 955 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 955 (989)
++..|..++..+...|++++|+..|+++++..|+ ++.++..+|.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5667778888888888888888888888888777 7778888888888888 68888888887765
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=59.79 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.++..+.+.|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567889999999999999999998866 8999999999999999999999999999998876
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=52.27 Aligned_cols=33 Identities=55% Similarity=1.006 Sum_probs=19.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD 297 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 297 (989)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666665555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.002 Score=58.06 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHH
Q 001966 853 IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCR 931 (989)
Q Consensus 853 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 931 (989)
+.|....-..|+.++.+.|++.||...|++...--.-.|......++++....++..+|...++++.+.+|.. .+....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4455554455555555555555555555555543223344555555555555555555555555555544321 233445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHH
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESK 982 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 982 (989)
.++..|...|++++|+..|+.+.+. -|++.........+.++|..+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 5555555555555555555555432 455555555555555555444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00055 Score=76.44 Aligned_cols=147 Identities=13% Similarity=0.067 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 001966 818 LKPATITYRSLLNGYNRM-----GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE--------GNVMEALKLKDLI 883 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~ 883 (989)
.+.+...|...+++.... +..+.|..+|+++++ .+|+.. .+..++.++... ++...+.+..+++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344555666555553321 235677777777777 677665 344333333221 1234455555554
Q ss_pred HhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 884 FDKR-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 884 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.... .+.++.+|..++-.+...|++++|...++++++.++ +..+|..+|.++...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 4431 233567777777777778888888888888888874 5678888888888888888888888888654 6765
Q ss_pred hhHHHHHh
Q 001966 963 ISLADIVK 970 (989)
Q Consensus 963 ~~~~~l~~ 970 (989)
.+|+..-+
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 55544333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00026 Score=71.31 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFR--LGFASCRTVANDFLR 939 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 939 (989)
.....+.|++++|+..|+..++..|... +.++.+++.+|...|++++|+..|+++++..|+ ..+.++..++.++..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 3444667888999988888888755421 467888888899999999999999988876654 136677788888888
Q ss_pred cCChhHHHHHHHHHHhCCCcccch
Q 001966 940 EGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.|++++|.++|+.+++. -|++.
T Consensus 230 ~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred cCCHHHHHHHHHHHHHH--CcCCH
Confidence 99999999999888764 56643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0005 Score=67.95 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE---GNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+-|...|..|+..|...|+.+.|...|.+..+ +.|++. .+..++.++..+ ....+|..++++++..++. |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 66788999999999999999999999999999 777666 555555555443 2367899999999998876 8899
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
...|+..++..|++.+|...|+.|++..|.-+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999886633
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=51.16 Aligned_cols=33 Identities=48% Similarity=1.018 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001966 370 IYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPN 402 (989)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 402 (989)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.057 Score=56.31 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=23.3
Q ss_pred HhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 101 KVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...|.-+-+|-+.+++.+|..+|.++..
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~ 34 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYD 34 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 3456667788899999999999999887
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.043 Score=59.92 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 470 KPNAIIYTNLVSTYFKKNKLQEAGKLVERMRRE-GITP--------DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLK 540 (989)
Q Consensus 470 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (989)
.|.+..|..+.......-.++-|...|-+.... |++. +...-.+=|.+| -|++++|.+++-+|-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 355566666655555555555555555443321 1100 000111112222 3667777776666544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN----DVIYTSIVDGYCKEGNIAEAISKFRC 603 (989)
Q Consensus 541 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (989)
.|..+.+.|++-...++++.- |-..| ...++.+.+.+.....+++|.+.+..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 244455556665555444321 11111 13455555555555556666555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.5e-05 Score=59.02 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCC
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGF 923 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 923 (989)
..|..++..+...|++++|+..|+++++.++. +..+|..++.++.+.| ++++|++.++++++..|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666677777777777777777777776655 6677777777777777 57777777777776553
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.3e-05 Score=59.48 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+.|++++|++.++++++..|+ +..++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555 555555555555555555555555555543
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=66.47 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD----NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
...|..++..+...|++++|...|++++. +.|+ ..++..++.++...|++++|++.++++++..+. ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 44567777777788888888888888877 3332 136777888888888888888888888876544 5666777
Q ss_pred HHHHHH-------ccCCHHHHHHHH
Q 001966 898 IIKALC-------KREEYSEALRLL 915 (989)
Q Consensus 898 l~~~~~-------~~g~~~~A~~~~ 915 (989)
++.++. ..|++++|...+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH
Confidence 777776 555655443333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=73.85 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 714 VPLDGSVYNALLSGCCK--E---EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD 788 (989)
Q Consensus 714 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 788 (989)
.+.+...|...+.+... . ++.+.|+.+|+++++..|....++..++.++.....+ .|..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~---------------~~~~- 396 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ---------------QPLD- 396 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc---------------CCcc-
Confidence 45666777776666432 2 2366888888888888887766666655544322110 1100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 867 (989)
.++...+.+..++.... ..+.+..+|..++..+...|++++|...++++++ +.|+...|..++..+
T Consensus 397 -----------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~ 463 (517)
T PRK10153 397 -----------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVY 463 (517)
T ss_pred -----------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 01112222222222221 1122334455554444455666666666666666 555555555556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 001966 868 CKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~ 888 (989)
...|+.++|.+.|+++...+|
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 666666666666666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=67.87 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=95.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHH--HHHHH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK---GIEPDNF--TYYVM 863 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~--~~~~l 863 (989)
++.|-..|++++|.+.|.+..+. +-+.+ ...|...+.+|.+. ++++|+..++++++. .-.|+.. .+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444555555555555544321 10001 12333333443333 666666666666551 1122222 44556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC--CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHH-hHH
Q 001966 864 IDAHCKE-GNVMEALKLKDLIFDK--RM-PI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFA-SCR 931 (989)
Q Consensus 864 ~~~~~~~-g~~~~A~~~~~~~~~~--~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~ 931 (989)
+..|... |++++|++.|+++.+. .. .+ -...+..++..+.+.|++++|++.|+++.....+ .+.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 6677777 7888888888877754 10 11 1234566777778888888888888877654322 1121 234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc------chhHHHHHhhhh--cCCChhhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN------SISLADIVKGEN--SGVDLDESKDLMK 986 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~--~~g~~~~a~~~~~ 986 (989)
..+.++...|+...|.+.+++..+. .|. ......|..++. ....+.++..-++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 4555677778888888888877533 332 233444555542 2334444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0049 Score=63.99 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=20.5
Q ss_pred hHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 100 LKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 100 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...|...+..+-..|++++|...|.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 45666666777777888888888888765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.8e-05 Score=57.98 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
.+.|++++|++.++++++..|. +..++..++.+|.+.|++++|..+++++....|+ ++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHhc
Confidence 5689999999999999998877 9999999999999999999999999999998877 5666655543
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.013 Score=58.70 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSF---NTLIEFLCISNKLQEAHQLLDAMLEE 781 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 781 (989)
...+...|++++|++.|+++....|.+..+. ..++.++.+.+++++|...+++.++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455666666666666666555333322 34555666666666666666666643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.9e-05 Score=49.27 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=14.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVP 296 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 296 (989)
+|+.++.++++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=57.47 Aligned_cols=94 Identities=23% Similarity=0.080 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVAND 936 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 936 (989)
..+++++...|+.++|+.+|+++++.|.... ..++..++..+...|++++|..++++.....|+. +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3445566666666666666666666554422 3345566666666666666666666666554431 22334445666
Q ss_pred HHhcCChhHHHHHHHHHH
Q 001966 937 FLREGVMDYAAKVLECMA 954 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~ 954 (989)
+...|+.++|.+++-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666677766666665443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0039 Score=62.51 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---H
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-I---TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN---F 858 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~ 858 (989)
+...+-..+..+...|++++|++.|+++... -|+. . ....++.++.+.+++++|...+++.++ ..|++ .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchH
Confidence 3333334555667788999999999998874 3432 2 235667788888999999999999888 45543 2
Q ss_pred -HHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 859 -TYYVMIDAHCKEG---------------N---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 859 -~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
++..++.++...+ + ..+|++.++++++.-|. +. -..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~--------------ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQ--------------YTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-Ch--------------hHHHHHHHHHHHH
Confidence 3444443322221 1 34566777777766433 21 1222222222211
Q ss_pred HCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 920 ESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN----SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 920 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
+.- ..--...+.-|.+.|+|..|..-++.+++. =|+ .+.++.+.+++...|..++|.+..+
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 110 011134555566666666666666666542 122 3445566666666666666655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.8e-05 Score=48.59 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRP 261 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 261 (989)
+.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999877
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.043 Score=59.92 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 540 KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS-GLVP--------NDVIYTSIVDGYCKEGNIAEAISKFRCMLARGIL 610 (989)
Q Consensus 540 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 610 (989)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+-+.+| -|++++|.+++-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 455666666666655555566665555443321 1110 001111111222 266677776666554431
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 611 PEVQTYSVLINGLSKKLELREALGIFLELLEK-GLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVL 689 (989)
Q Consensus 611 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 689 (989)
..|....+.|++-...++++.--.. .-..-...++.+...+.....+++|.++|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 1233344455554444444321000 00001233445555555555555555555433211 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
+.++.+..++++-..+... +|.+....-.+.+++...|.-++|.+.|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 3333333333333322222 2333444445555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.1e-05 Score=47.25 Aligned_cols=28 Identities=43% Similarity=0.826 Sum_probs=13.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEK 292 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 292 (989)
+||+++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=55.41 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCc---CHHH
Q 001966 156 LVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPS--LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEF---DVYS 230 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 230 (989)
.+.+.+..++-..|+.++|+..|++....|.... ..++-.+...+...|++++|..++++... .+|. +...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCccccHHH
Confidence 3556778888999999999999999988876654 44666778888888888888888888877 4333 3333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001966 231 YTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGL 273 (989)
Q Consensus 231 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (989)
...+.-++...|+.++|++.+-.... ++...|.--|..|
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 44445567778888888887766654 2333444444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=66.84 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAI 898 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 898 (989)
|........+.|++++|+..|+.+++ ..|+. ..+..++.++...|++++|+..|+.+++..+. ....++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333556788888888888887 56654 36667778888888888888888888865322 246677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.++...|+.++|...|+++++..|+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888766
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=9e-05 Score=46.77 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 001966 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGC 259 (989)
Q Consensus 229 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 259 (989)
+|||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.13 Score=52.18 Aligned_cols=219 Identities=21% Similarity=0.157 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLA--STLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
....+...+......... ...........+...+.+..+...+...... ........+......+...+++.++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443332 2344444555555555555555555555431 1122334444555555555556666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 810 FLEMQQRNLKPATITYRSLLN-GYNRMGNRSEVFVVFEEMLGKGIEPD----NFTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
+.........+ ......... .+...|++++|...+.+.+. ..|. ...+......+...+++++|...+.++.
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66655532111 112222222 55666666666666666654 3331 1233333344555667777777777766
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..........+..+...+...+++++|...+.++....+. ....+..++..+...|+++++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6532213556666666677777777777777777666544 345556666666655667777776666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=63.97 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVAN 935 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 935 (989)
.+..+-.+.+.|++.+|...|...++..|. -.+.++.+|+.++..+|++++|...|..+.+..|+- -|.++..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 344455567889999999999999987543 346789999999999999999999999999876651 3778999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 936 DFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+..+.|+.++|..+|+.+.+. =|++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 999999999999999998865 3554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00057 Score=54.00 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|.+.+++++|+++++++++.+|+ ++..+..+|.++...|++++|.+.++.++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444444 44444444444444444444444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0082 Score=58.68 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNL--KPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+...|++++|++.|+.+..... +-.......++.++.+.|++++|...+++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555444210 00122334444445555555555555555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.054 Score=52.06 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-----GIEPDNFTYYVM 863 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l 863 (989)
..+.++..+...|.+.-...+++++.+...+.++.....|++.-.+.|+.+.|...|++..+. ++.-......+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455667777778888888888888888765667777888888888899999998888866542 222222333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
...+.-++++.+|...+.++...++. ++.+-+.-+-++.-.|+..+|++.++.+.+..|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 56677788899999999999988766 77777777778888899999999999999887764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0056 Score=64.76 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 802 NMEKAKQLFLEMQQ-RNLKPA-TITYRSLLNGYNRM---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 802 ~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
..+.|..+|.+... ..+.|+ ...|..++.++... ....+|.++.+++++ +.|++. ....++.+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35678888888872 125565 44666666665322 245677788888888 777555 66667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHH-HHHHHhcCChhHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTV-ANDFLREGVMDYAAK 948 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 948 (989)
.|+++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.++++++..|.--......+ .+.|+.. ..++|++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 78888888888888888766 7788888888888888999999988888888766322222332 3345544 4466666
Q ss_pred HHH
Q 001966 949 VLE 951 (989)
Q Consensus 949 ~~~ 951 (989)
+|-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00065 Score=53.65 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
..++.+.+++++|++.++.+++.+|. +...|...+.++.+.|++++|...++++++..|+ ++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~-~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPD-DPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC-cHHHH
Confidence 46788999999999999999999877 8899999999999999999999999999999887 54443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=65.53 Aligned_cols=96 Identities=13% Similarity=-0.049 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
.++.+++.++.+.+++.+|++.-+++++.++. |..++..-+.++...|+++.|+..|+++++..|. |-.+-..|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 45777888999999999999999999999866 9999999999999999999999999999999988 888888888877
Q ss_pred HhcCChhHH-HHHHHHHHh
Q 001966 938 LREGVMDYA-AKVLECMAS 955 (989)
Q Consensus 938 ~~~g~~~~A-~~~~~~~~~ 955 (989)
.+..++.+. .++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777777554 888888875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0046 Score=63.78 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI-SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCK 799 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 799 (989)
|..++....+.+..+.|..+|.++.+.+......|...+..-.. .++.+.|..+|+..++. +..+...|...++.+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 34444444444444444444444443322233333333333222 23333344444444432 22234444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPAT---ITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555544432 22221 2444444444455555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0026 Score=67.97 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=69.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 001966 332 DTVAYYALIDGFVKQGDVEEAFRVKDELVAS--GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSL 409 (989)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 409 (989)
+......+++......+++++..++...... ....-..|..++|+.|.+.|..++++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444445555555555555666655555543 11111234456666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhc
Q 001966 410 IQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHC 451 (989)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 451 (989)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666655555555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.23 Score=50.29 Aligned_cols=222 Identities=23% Similarity=0.204 Sum_probs=144.1
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGVP-LDGSVYNALLSGCCKEEKLEQALELFRDMLE--KGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
+....+...+......... .....+......+...+++..+...+..... ..+.....+......+...+.+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 1245555666666677777777777777665 334555566666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 774 LLDAMLEEQVNPNHDTYTTLIN-QYCKVQNMEKAKQLFLEMQQRNLKP----ATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.+++...+.++
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777777543332 112222222 67778888888888888755 233 2334444555567778888888888888
Q ss_pred HhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 849 LGKGIEPD--NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 849 ~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.. ..|+ ...+..+...+...+++++|...+..+....+. ....+..+...+...|+.+++...+.+.....+.
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87 5555 346777778888888888999888888876433 3556666666666777789999888888877654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=52.12 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCChhhHHHH
Q 001966 339 LIDGFVKQGDVEEAFRVKDELVASGN-QIDLVIYNTLLKGFCKSG--------KMEKAREVLNEIIRMGIEPNSRTYTSL 409 (989)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~l 409 (989)
.|..++..|++.....+|+.+.+.|+ -|++.+|+.++...++.. ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544321 233445555555555556666666655
Q ss_pred HHHHH
Q 001966 410 IQGYC 414 (989)
Q Consensus 410 i~~~~ 414 (989)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.028 Score=54.89 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
.+..+...|++++|++.|+.+....|.+ ..+...++.++.+.|++++|...+++.++.-+.....-+.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~- 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY- 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH-
Confidence 3444456666777777777776665522 234555666666666666666666666643111111111111111110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
+..... . .......+...+|...|+.+++ .-|+.. ...+|.+.+
T Consensus 90 ---------~~~~~~--~----------~~~~~D~~~~~~A~~~~~~li~--~yP~S~-------------y~~~A~~~l 133 (203)
T PF13525_consen 90 ---------YKQIPG--I----------LRSDRDQTSTRKAIEEFEELIK--RYPNSE-------------YAEEAKKRL 133 (203)
T ss_dssp ---------HHHHHH--H----------H-TT---HHHHHHHHHHHHHHH--H-TTST-------------THHHHHHHH
T ss_pred ---------HHhCcc--c----------hhcccChHHHHHHHHHHHHHHH--HCcCch-------------HHHHHHHHH
Confidence 000000 0 0001112334556666666665 444432 223343333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHH
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
..+.+. =...-..+++.|.+.|++..|+..++.+++.-|+. ...++..++.+|.+.|..+.|.
T Consensus 134 ~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 134 AELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 333211 11222345666777777777777777777765552 1345667777777777776443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.004 Score=66.56 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 297 DSYTYVNLIYGFSAAKRLGDVRLVLSELIGK--GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTL 374 (989)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 374 (989)
+.+....+++.+....+++++..++-+.... ....-+.|..++|+.|.+.|..+++..++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 11222334445555555666666666655555555666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001966 375 LKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 415 (989)
++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666555555544555555554544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0022 Score=66.21 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK-EGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
.+|..+++...+.+..+.|..+|.++.+.+ ......|...+..-.. .++.+.|.++|+..++.-+. +...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 578899999999999999999999998621 1234456666666445 56777799999999987434 88999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhc
Q 001966 902 LCKREEYSEALRLLNEMGESGFR-L-GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENS 974 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 974 (989)
+...|+.+.|..+|++++..-+. . ....|..++..=.+.|+.+...++.+++.+. -|+......+.+-|.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~~ 152 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYSF 152 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-B
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhc
Confidence 99999999999999999877543 1 1357899999999999999999999999774 6766666666665543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=62.05 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 767 KLQEAHQLLDAMLE-EQVNPNH-DTYTTLINQYCKV---------QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 767 ~~~~A~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..+.|+.+|.+.+. ....|+. ..|..+..++... ....+|.++.++..+.+ +.|..+...++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45788888999882 2345543 4555555444321 23456777888888754 56777888888888888
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS-AEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
|+++.|...|+++.. ++|+.. +|...+..+.-.|+.++|.+.++++++..|.-- ..+....++.|+.. ..++|++
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999999 899877 788888888899999999999999988765422 22333344455544 5778888
Q ss_pred HHHH
Q 001966 914 LLNE 917 (989)
Q Consensus 914 ~~~~ 917 (989)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 8876
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0065 Score=53.43 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH---HhHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRM--PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF---ASCRTV 933 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l 933 (989)
.+..-+....+.|++++|++.++.+...-| +-...+...++.+|.+.|++++|+..+++.++.+|. ++ -+++..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHHHH
Confidence 344445566677888888888888776522 224566777888888888888888888888888776 43 345566
Q ss_pred HHHHHhcCC---------------hhHHHHHHHHHHhCCCcccc
Q 001966 934 ANDFLREGV---------------MDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 934 ~~~~~~~g~---------------~~~A~~~~~~~~~~~~~p~~ 962 (989)
|-++..... ..+|...|+.+++. -||+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S 132 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR--YPNS 132 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH--CcCC
Confidence 666666655 66777778777654 5664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0044 Score=52.17 Aligned_cols=92 Identities=24% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHHHHHHhcC
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVANDFLREG 941 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 941 (989)
.++.+.|+.++|++.|.+++..-|+ .+.+|+.-+.++.-+|+.++|+.-++++++...... -.+|...+..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455566666666666666665444 566666666666666666666666666665532211 223555666666666
Q ss_pred ChhHHHHHHHHHHhCC
Q 001966 942 VMDYAAKVLECMASFG 957 (989)
Q Consensus 942 ~~~~A~~~~~~~~~~~ 957 (989)
+.+.|+.-|+.+-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0031 Score=52.08 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 001966 230 SYTTVIDAYFKVRNAEEGKRVFSEMGEKGC-RPNVATYNVVIGGLCRVG--------FVDEAVELKNSMVEKGLVPDSYT 300 (989)
Q Consensus 230 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~ 300 (989)
|-...|.-++..+++...-.+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334455556666777777777777777666 677777777776666532 12233444444444444444444
Q ss_pred HHHHHHHH
Q 001966 301 YVNLIYGF 308 (989)
Q Consensus 301 ~~~li~~~ 308 (989)
|+.++..+
T Consensus 107 Ynivl~~L 114 (120)
T PF08579_consen 107 YNIVLGSL 114 (120)
T ss_pred HHHHHHHH
Confidence 44444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.038 Score=55.62 Aligned_cols=233 Identities=14% Similarity=0.091 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHH
Q 001966 720 VYNALLSGCCKEEKLEQALELFRDMLEKGL-----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV---NP--NHDT 789 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~ 789 (989)
.|..+..++.+.-++.+++.+-+.-....- ........+..++...+.++++++.|+.....-. .| ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344445555555555555555544443321 1123444566777777778888888887764211 11 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQ----RNLKPAT-----ITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEPD 856 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~ 856 (989)
+..|...|.+..++++|.-+..+..+ .++..-. .....+..++...|..-+|.+.-++..+ .|-.|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888888888766655443 1211111 1234455677778888888777766654 444443
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHH----C
Q 001966 857 NF-TYYVMIDAHCKEGNVMEALKLKDLIFDK--RMP---ISAEAYKAIIKALCKREEY-----SEALRLLNEMGE----S 921 (989)
Q Consensus 857 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~----~ 921 (989)
.. ....++++|...|+.+.|..-|+++... +.. -..++...++.++....-. =+|+++-.++++ .
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 32 4556779999999999998888877642 111 0122333333333221111 224444444443 3
Q ss_pred CCcc-CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 922 GFRL-GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 922 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
+.+. -......++.+|...|.-++-...+.+
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3331 133456788899888876654444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0057 Score=63.02 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 971 (989)
..+..++-++.+.+++.+|++..+++++..+. +..+++.-|.+|...|+++.|+..|+++++. .|+. ++-..+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 35778899999999999999999999999988 9999999999999999999999999999874 8864 444444444
Q ss_pred hhcCC-ChhhHHHHHhhh
Q 001966 972 ENSGV-DLDESKDLMKQT 988 (989)
Q Consensus 972 ~~~~g-~~~~a~~~~~~~ 988 (989)
-.+.- ..+...+++.+|
T Consensus 335 ~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 33222 233345555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0074 Score=60.43 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=147.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 001966 728 CCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVNPN---HDTYTTLINQYCK 799 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 799 (989)
+....+.++|+..+.+.+.+-. ....++-.+..+.+..|++++++..--..+.. ..... ...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788899998888877532 34456777888889999988887654433321 11111 1344455555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhc
Q 001966 800 VQNMEKAKQLFLEMQQR-NLKP---ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKE 870 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~ 870 (989)
.-++.+++.+-+.-... |..| -......+..++.-.+.++++++.|+.+.......++ ..+-.|...+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55566666555444432 2223 1234455777788888899999999988873222222 2577788888899
Q ss_pred CCHHHHHHHHHHHHhC----CCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCcc-CHHhHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDK----RMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGES----GFRL-GFASCRTVAND 936 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~----~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~ 936 (989)
.++++|.-+..++.+. +.. .+ ..+...++-++..+|++..|.+.-+++.+. +..+ .......++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999888777654 222 01 123455667788888888888888876543 3221 23445678999
Q ss_pred HHhcCChhHHHHHHHHHH
Q 001966 937 FLREGVMDYAAKVLECMA 954 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~ 954 (989)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999988888773
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.35 Score=47.31 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=89.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHh----
Q 001966 798 CKVQNMEKAKQLFLEMQQRN--LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG-KGIEPDNF-TYYVMIDAHCK---- 869 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~-~~~~l~~~~~~---- 869 (989)
.+.|++++|.+.|+.+.... -+-...+...++.++.+.+++++|+..+++.+. .+..|+.. .+...+.++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 34555555555555555431 011133444455555555666666666555555 22333322 22221111111
Q ss_pred -cCC---HHHHHHHHHHHHhCCCC----CCH------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CH
Q 001966 870 -EGN---VMEALKLKDLIFDKRMP----ISA------------EAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GF 927 (989)
Q Consensus 870 -~g~---~~~A~~~~~~~~~~~~~----~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 927 (989)
..+ ..+|..-+++.++.-|. +|. ..-..+++-|.+.|.+..|..-++.+++.-++- ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 111 23344444444443211 111 112356777899999999999999999886552 14
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.++..+..+|...|-.++|.+.-+-+... .||+.
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 45677888999999999998887666433 46654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.17 Score=53.15 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCI---SNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
...++-+|....+++.-+++.+.+..... .....-...+-++.+ .|+.++|++++..++...-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33455567777777777777777765421 233334445556666 77888888888886655556677777776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNV 873 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 873 (989)
+..|... | .+.+.. |. ...++|+..|.+.-+ +.|+..+-.+++..+...|..
T Consensus 224 GRIyKD~---------~---~~s~~~-d~-------------~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 224 GRIYKDL---------F---LESNFT-DR-------------ESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHH---------H---HHcCcc-ch-------------HHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCc
Confidence 6655321 1 111111 11 116667777777766 556554433333333334432
Q ss_pred HHHH----HHH----HHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 874 MEAL----KLK----DLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 874 ~~A~----~~~----~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.+.. ++- ..+.++| ...+...+..++.+..-.|++++|.+.+++|....
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2111 111 1111111 22344555566666666677777777777666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=51.89 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGES----GFR-LG-FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..++.+|...|++++|+..++++++. +++ |+ ..++..+|.+|...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776643 211 11 44567788888888888888888877654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.4 Score=46.40 Aligned_cols=146 Identities=15% Similarity=0.027 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
.+..+++|++=.. ...+.++..+.-.|.+.-...++++.+++.-.-+......|+..-.+.|+.+.|..+++.
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555566655432 345677778888899999999999999943222445677788999999999999999996
Q ss_pred HHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 883 IFDK-----RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 883 ~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
..+. +...+..+....+..+.-++++.+|...+.+....++. ++.+.+.-+-++.-.|+..+|.+..+.|++.
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5532 33434555666667788889999999999999999877 8888899999999999999999999999875
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=55.72 Aligned_cols=69 Identities=28% Similarity=0.402 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001966 347 GDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKS----------------GKMEKAREVLNEIIRMGIEPNSRTYTSLI 410 (989)
Q Consensus 347 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li 410 (989)
|.++=....+..|.+.|+..|+.+|+.|++.+=+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44444455555555555555555555555554331 12234555555555555555555555555
Q ss_pred HHHHh
Q 001966 411 QGYCR 415 (989)
Q Consensus 411 ~~~~~ 415 (989)
+.+.+
T Consensus 146 ~iFG~ 150 (228)
T PF06239_consen 146 NIFGR 150 (228)
T ss_pred HHhcc
Confidence 55543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.033 Score=50.29 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+.-+...|++++|..+|+-+.- .+|-+. -+..|+.++-..+++++|+..|..+...++. |+......+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 344455678888888888888777 556444 4455667777778888888888888776544 666677788888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 001966 906 EEYSEALRLLNEMGES 921 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~ 921 (989)
|+.++|+..|+.+++.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888887774
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.025 Score=56.25 Aligned_cols=116 Identities=11% Similarity=-0.034 Sum_probs=53.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHh
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNRS 839 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~ 839 (989)
..|+..+|-..++++++. .+.|...+.---.+|.-.|+.+.-...++++... ..||.. .-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 2334444444444555555555555555554432 122221 1122333444455555
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
+|.+..++.++ ++|.+. +.......+...|++.++.++..+-
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555555555 444333 3344444445555555555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.69 Score=48.46 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNSG-LVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQ-TYSVLI 620 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li 620 (989)
..+|...+....+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+-=+.. .||.. --+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3445556666666666777777777777666 4566667777776555 45566666666554443 23333 334445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPD--VDTYNSLITSFCKICDVDKAFQLYEEMCEK 677 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 677 (989)
..+...++-+.|..+|+..+++ +..+ ...|..+|+--.+-|++..+..+-+.+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5556666666676666654433 1111 345555665555666666665555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.69 Score=48.44 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001966 682 NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRG-VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIE 760 (989)
Q Consensus 682 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 760 (989)
-..+|+.+++...+..-++.|..+|-++.+.+ +.++..++++++.-++ .|+..-|..+|+--+...+.+..-....+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35567778887777777888888888888877 5667778888887665 477788888888887777666665566667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNPN--HDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
.+...++-+.|..+|+..++. +..+ ...|..++..-..-|+...|..+=+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777888888888888866542 1112 35677777777777887777777776666
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.072 Score=57.74 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+...+..-+.+...+.-|.++|++|-+ ...+++.+.+.++|++|..+.++..+. -..+|.-.++-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHH
Confidence 44555555556666677778888877644 234567778888899998888776543 22334444444
Q ss_pred HHccCCHHHHHHHHHH
Q 001966 902 LCKREEYSEALRLLNE 917 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~ 917 (989)
+....+++||.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 5555555555544433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0049 Score=65.08 Aligned_cols=101 Identities=16% Similarity=-0.014 Sum_probs=71.0
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
..|+.. .+++++.+|...|++++|+..|+++++.++. +. .+|+.++.+|..+|+.++|+..++++++.... .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~-~-- 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL-K-- 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch-h--
Confidence 455444 8889999999999999999999999998765 44 35999999999999999999999999986311 1
Q ss_pred hHHHHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 001966 929 SCRTVAN--DFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 929 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 -f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 -FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred -HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111111 11122233456666666665554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0025 Score=43.94 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.+|..++..|...|++++|+++++++++..|+ |+.++..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 34556666666666666666666666666666 666665554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.043 Score=51.11 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=113.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMG 836 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 836 (989)
+..|-..|-..-|..-|.+.+.. .|+ +..||-+.-.+...|+++.|.+.|+...+. .|. ..+...-+-++.--|
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecC
Confidence 34567778888888888877763 554 577888888888999999999999999884 443 334433444455678
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEYSEALRLL 915 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 915 (989)
++.-|.+-+.+.-+ -+|++.--...+..-...-++.+|..-+.+=.+ ..+.+-|.+.+-. |.-+=..+.+.+-.
T Consensus 148 R~~LAq~d~~~fYQ--~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~ 222 (297)
T COG4785 148 RYKLAQDDLLAFYQ--DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERL 222 (297)
T ss_pred chHhhHHHHHHHHh--cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 99999887777766 455444221112222344567777654433222 1244444433322 22111222222222
Q ss_pred HHHHHCCCc---cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 916 NEMGESGFR---LGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 916 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
..-.+.+.. .=..+|..|+.-|...|+.++|..+|+.++..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221111100 01457889999999999999999999988754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.22 Score=52.42 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRN---LKPATITYRSLLNGYNR---MGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 865 (989)
.++-.|....+++.-+++++.+...- +......-..++-++.+ .|+.++|+.++..++...-.++..++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777778888888888777521 11122233455566666 7888888888888666545566667666653
Q ss_pred HH----Hh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH----HHHHHH----HHHHHCC---Ccc
Q 001966 866 AH----CK-----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS----EALRLL----NEMGESG---FRL 925 (989)
Q Consensus 866 ~~----~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~---~~~ 925 (989)
.| .. ....++|+..|.+..+.. |+...--.++..+...|... +..++. ..+.+++ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 33 22 223789999999998765 34333333444455555422 222322 1111222 234
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 926 GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 926 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+.+.+..++.+..-.|++++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6777788999999999999999999999764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=61.78 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.+...++.++.+|.+.|++++|+..|++.++ ++|+.. +|++++.+|...|++++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567999999999999999999999999999 899865 4899999999999999999999999986
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.029 Score=52.94 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001966 366 IDLVIYNTLLKGFCK-----SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 366 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 415 (989)
.+-.+|..++..|.+ .|.++=....++.|.+-|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 467777777777775 36677778888899999999999999999998754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.6 Score=47.97 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
+..+|...++--...|+.+...-+|+...-.--.-...|...+.-....|+.+-|...+....+-..+..+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777787788888888888888876543334445566666666668888887777666544333222222212222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHH---HHHHHHHhCCCCCCHH--HHHHHH-HHHHh
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVF---VVFEEMLGKGIEPDNF--TYYVMI-DAHCK 869 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~--~~~~l~-~~~~~ 869 (989)
.-..|+++.|..+++.+.+. . |+.+ .-..-+....+.|+.+.+. +++....+.-..+... .+...+ -.+.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 33467888888888888775 3 5533 3333445556777877777 4444433311122111 111122 22233
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
.++.+.|..++.++.+..+. +...|..+++....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 57788888888888876543 7777777777766655
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.8 Score=48.46 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 581 YTSIVDGYCKEGNIAEAISKFRCMLAR 607 (989)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (989)
|..+.++|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455666777778888888888888764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.097 Score=58.37 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRN-LKPAT-----ITYRSLLNGYN----RMGNRSEVFVVFEEMLGKGIEPDNFTY 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~ 860 (989)
..++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+ ..|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 344444445566666666655554421 11110 12222222222 24567778888888887 67877755
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH-HHHHH
Q 001966 861 YVM-IDAHCKEGNVMEALKLKDLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC-RTVAN 935 (989)
Q Consensus 861 ~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 935 (989)
... +..+...|+.++|++.++++.... .+.....+.-+++++.-++++++|...+.++.+.... +...| +..|.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence 543 477777888888888888766421 1122334566777888888888888888888876544 33333 45666
Q ss_pred HHHhcCCh-------hHHHHHHHHHHh
Q 001966 936 DFLREGVM-------DYAAKVLECMAS 955 (989)
Q Consensus 936 ~~~~~g~~-------~~A~~~~~~~~~ 955 (989)
++...|+. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777877 777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.047 Score=53.67 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHc
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCK 904 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 904 (989)
.+.+.|++.+|...|...++ -.|+.. .++-|+.++...|++++|...|..+.+.-++ .-++++..|+.+..+
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 35567788888888888887 445432 5666788888888888888888888875322 245788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+.++|..+|+++++.-|.
T Consensus 228 l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCC
Confidence 89999999999888888776
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.22 Score=47.59 Aligned_cols=86 Identities=17% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CccCHHhHHHH
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFD----KRMPIS-AEAYKAIIKALCKREEYSEALRLLNEMGESG----FRLGFASCRTV 933 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l 933 (989)
....+.+..++++|-..+.+-.. ...-++ ...+...+-.+.-..++..|.+.++.--+.+ ++ +..+...|
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenL 234 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENL 234 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHH
Confidence 34555566666665555444321 111111 1223344444555556666666666543332 11 34444445
Q ss_pred HHHHHhcCChhHHHHHH
Q 001966 934 ANDFLREGVMDYAAKVL 950 (989)
Q Consensus 934 ~~~~~~~g~~~~A~~~~ 950 (989)
..+| ..|+.+++..++
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 4443 345555554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.19 Score=54.73 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=13.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001966 865 DAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.++.+.|+..||.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 344556777777777777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.099 Score=48.03 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCcccchh
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA-----SFGWVSNSIS 964 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 964 (989)
+...++..+...|++++|+..+++++...|- +...|..+..+|...|+..+|.+.|+++. +.|+.|.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677777888888888887777766 77777778888888888888877777664 3566776443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.87 Score=44.62 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH---hc
Q 001966 728 CCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPNHDTYTTLINQYC---KV 800 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~---~~ 800 (989)
-.+.|++++|.+.|+.+....|.+ ..+...++.++.+.+++++|+..+++.+... ..|+. -|-..+.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 346677777777777777766622 3455556667777777888877777777542 22332 2322233222 11
Q ss_pred ----CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcC
Q 001966 801 ----QN---MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEG 871 (989)
Q Consensus 801 ----g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g 871 (989)
.+ ..+|+.-|+++++. -||.. -..+|..-...+.. .- .=..+++-|.+.|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLND------ALAGHEMAIARYYLKRG 181 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHH------HHHHHHHHHHHHHHHhc
Confidence 11 22344444444442 23321 01111111111110 00 1112346677788
Q ss_pred CHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 872 NVMEALKLKDLIFDKRM--PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+..|..-++++++.-+ ....+++..+..+|.+.|-.++|.+.-.-+...-|+
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 88888888888877622 223456667777788888888887776655444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.047 Score=46.28 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=67.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHc
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISA---EAYKAIIKALCK 904 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~ 904 (989)
.++...|+.+.|++.|.+.+. +.|... .|++-..++.-+|+.++|+.-++++++. |.. .. .+|..-+..|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 445677888888888888887 777544 7777888888888888888888888876 333 22 345555666778
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+.+.|..-|+.+.+.+.+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 88888888888888877743
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
+..++.++...|++++|++++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555554443
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=3.3 Score=49.38 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
-..+.|+.+-+-+++++.+. +++..-| .|+.| .+++++|+..+.++- ...+....+..-+.|.+.+|+
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC------ccccHHHHHHHHhcccchhhh
Confidence 34456666666666666632 2222222 12322 356677776666553 223333444455667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
.++..-.+ .-...|.+.++.+...+++++|.-+|+..=+ ....+.+|..+|+|++|..+..++..
T Consensus 929 ~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~-- 993 (1265)
T KOG1920|consen 929 ALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE-- 993 (1265)
T ss_pred heeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--
Confidence 66532111 1123455555566667777777777765422 22345567778888888888777643
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 853 IEPDNF---TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 853 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+... +-..|+.-+..++++-+|-++..+.... + ...+..|++.-.+++|+.+..+.
T Consensus 994 --~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 994 --GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred --CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhHhHHHHHHHHHHhc
Confidence 2222 2255667777788888887777776532 1 12334566666777777776553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.084 Score=58.84 Aligned_cols=173 Identities=16% Similarity=0.018 Sum_probs=116.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHH-----HHHHHHHHH----hcCCHHHHHH
Q 001966 809 LFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFT-----YYVMIDAHC----KEGNVMEALK 878 (989)
Q Consensus 809 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~-----~~~l~~~~~----~~g~~~~A~~ 878 (989)
+|+-+... +||. ...++....-.|+-+.+++.+.+..+. ++.-...+ |+..+..++ ...+.+.|.+
T Consensus 179 ~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 44444442 3444 345566666689999999999998772 23222222 222232222 3556889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG---FRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+++.+.+.-|. ..-....-++.+...|+.++|++.++++.... ++.+...+.-+++++.-.++|++|...+.++.+
T Consensus 255 lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99999986433 33444456888999999999999999877432 223455678999999999999999999999976
Q ss_pred CCCcccchhH--HHHHhhhhcCCCh-------hhHHHHHhhh
Q 001966 956 FGWVSNSISL--ADIVKGENSGVDL-------DESKDLMKQT 988 (989)
Q Consensus 956 ~~~~p~~~~~--~~l~~~~~~~g~~-------~~a~~~~~~~ 988 (989)
. ..-...+ +..+-.+...|+. ++|.++++++
T Consensus 334 ~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 334 E--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred c--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3 2223333 4445556777877 8888888775
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.064 Score=47.36 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc---
Q 001966 888 MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS--- 962 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 962 (989)
+...+..+..-+....+.|++++|++.|+.+...-|-. ...+...|+.+|++.|++++|...+++.++. .|+.
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~v 83 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNV 83 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCc
Confidence 34456677778888999999999999999998876552 3667899999999999999999999999875 6752
Q ss_pred -hhHHHHHhhhhcCC
Q 001966 963 -ISLADIVKGENSGV 976 (989)
Q Consensus 963 -~~~~~l~~~~~~~g 976 (989)
-.++..+-....+.
T Consensus 84 dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQD 98 (142)
T ss_pred cHHHHHHHHHHHHHh
Confidence 34455554444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0041 Score=39.75 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHCCCccCHHhHHHHHHHHHhcCChhHHH
Q 001966 915 LNEMGESGFRLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
|+++++..|+ ++.+|..||.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777 7777777777777777777775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=48.83 Aligned_cols=90 Identities=21% Similarity=0.115 Sum_probs=55.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
+.+.|++++|..-|..+++ +.|... .|..-+.++.+.+.++.|++-..++++.++. ...++..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 4556666777766666666 444221 2334445666667777777777777766654 444555556666667
Q ss_pred CCHHHHHHHHHHHHHCCCc
Q 001966 906 EEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~ 924 (989)
.++++|+.-|+++++..|.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 7777777777777766655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.28 Score=46.92 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred ChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 99 DLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 99 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
....|..-+..+-.+++|++|...|.++++
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 567788888888899999999999999885
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.9 Score=49.59 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 001966 664 VDKAFQLYEEMCEKGVEPNTLTYNVLIDG-----FCKAGDLTEPFQLFDEMTK-------RGVPLDGSVYNALLSGCCKE 731 (989)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 731 (989)
...|.++++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777766664 22222222222 2344567777777776655 33 223444455555542
Q ss_pred C-----CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 001966 732 E-----KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC----K 799 (989)
Q Consensus 732 g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 799 (989)
. +.+.|+.++....+.+.++.... ++..+... .+..+|.++|......|.. ..+..+..+|. -
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 2 44556666666666554443322 22222222 2345666666666555422 12222222221 1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
..+.+.|..++++..+.| .|...--...+..+.. +.++.+...+..+.+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 224555566666555554 2222211222222222 555555555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.29 Score=48.64 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=15.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 926 GFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 926 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|...-..|+..|...|+.++|.+.+-.+++
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.19 E-value=3.7 Score=48.04 Aligned_cols=189 Identities=15% Similarity=0.024 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHhHHHHHHH--------HHHhCCCCCCHHHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRN-LKPA-------TITYRSLLNGYNRMGNRSEVFVVFE--------EMLGKGIEPDNFTYY 861 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~ 861 (989)
+-.|++..|...++.+.+.. -.|+ +..+...+-.+...|+.+.|...|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 56789999999999887631 1121 2233334444567899999999998 333433333333332
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHHHHhC---CCCCCHHHHHHH-HHHHHcc--CCHHHHHHHHHHHHHCC-Ccc-C-
Q 001966 862 V--MIDAHCKEGN--VME--ALKLKDLIFDK---RMPISAEAYKAI-IKALCKR--EEYSEALRLLNEMGESG-FRL-G- 926 (989)
Q Consensus 862 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~-~~~-~- 926 (989)
. ++..+...+. .++ +.++++.+... .+..+...+..+ ..++... -...++...+.+.++.. -.. +
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 3334443333 222 56666655432 222233344444 3333211 12235555555544332 010 1
Q ss_pred ---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccc--chhH-----HHHHhhhhcCCChhhHHHHHhh
Q 001966 927 ---FASCRTVANDFLREGVMDYAAKVLECMASFGW-VSN--SISL-----ADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 927 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
..+++.++..+. .|+..+..+.........- .|| ...| ..+.+.+...|+.++|.....+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 233455666666 7887775555444332111 244 2334 2444457788999999887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.19 Score=46.52 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
++..+...|++++|+..++..+....+.+ ..+-..|++.....|++++|++.+....+.+. .+.....-|+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 35778888999999998888875422111 22344677888889999999998887554432 344567788899999
Q ss_pred CChhHHHHHHHHHHhCC
Q 001966 941 GVMDYAAKVLECMASFG 957 (989)
Q Consensus 941 g~~~~A~~~~~~~~~~~ 957 (989)
|+.++|+..|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.27 Score=45.10 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
.++..+...|++++|+...+.++..+|- +...|..++.+|...|+..+|++.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444555556666666666666655543 5556666666666666666666665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=3 Score=47.72 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 303 NLIYGFSAAKRLGDVRLVLSELIGKGLKLD--TVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCK 380 (989)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 380 (989)
.-+..+++..-++-|..+-+. .+..++ .......++-+.+.|++++|...+-+-... ++| ..+|.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344444555555555444332 122222 122333445566778888887777665543 222 234455555
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 381 SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAI 460 (989)
Q Consensus 381 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (989)
..++.+-..+++.+.+.|+ .+...-+.|+++|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|.-+
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666777777777774 455556778888888888877666665544 2221 11233455566666666666655
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 461 LGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
-.+... +......++. ..+++++|.+.+..+
T Consensus 486 A~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 544332 2333333333 467788888887765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.21 Score=50.00 Aligned_cols=165 Identities=11% Similarity=-0.042 Sum_probs=129.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcC
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV----MIDAHCKEG 871 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~----l~~~~~~~g 871 (989)
.....|+..+|...++++.+. .|.|...+.---.+|.-.|+.+.-...+++++.+ .+||.+.|.. +.-++.+.|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 345678899999999999884 5777778888888999999999999999998873 4677665444 346778899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---cCHHhHHHHHHHHHhcCChhHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR---LGFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
-+++|.+..+++.+.+.. |..+-..++.++...|+..++.++..+-...=.. .-.+-|.+.+-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999999998855 8888889999999999999999998874322111 113446778888889999999999
Q ss_pred HHHHHHhCCCcccch
Q 001966 949 VLECMASFGWVSNSI 963 (989)
Q Consensus 949 ~~~~~~~~~~~p~~~ 963 (989)
+|+.=+-..+..|+.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 998754444556543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.054 Score=49.80 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=80.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPIS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
++-+...|++++|..-|..+++.-++-. ...|..-+.++.+.++++.|+.-..++++.+|. ...++...+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3567789999999999999998744322 235667788899999999999999999999987 67777888999999
Q ss_pred cCChhHHHHHHHHHHhCCCccc
Q 001966 940 EGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..++++|++-|+++++. .|.
T Consensus 181 ~ek~eealeDyKki~E~--dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHh--Ccc
Confidence 99999999999999875 563
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.57 Score=46.70 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
......|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34456788888888888888887766777778888888888888888888776533111111222223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
...+-.+.-. -+.|...-..++..+...|+.++|.+.+-.++.
T Consensus 222 ~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444334333 123455556666666666666666666666655
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.00 E-value=2.5 Score=44.29 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001966 476 YTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCM 555 (989)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 555 (989)
.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..+++++-..+... +-++.-|..++..+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556677776666655553 25666777777777777777766654322 1134667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001966 556 AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISK 600 (989)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (989)
.|...+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777777666551 124456667777777777654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.84 E-value=3.9 Score=45.20 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=124.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
+...|..-++.-...|+.+.+.-++++.... +.--...|-..+......|+.+-|..++....+--.+..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777788899999999999988742 112335677777777777998888887777666433334444333344
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCC--CHHHHHHHHHH-HH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEAL---KLKDLIFDKRMPI--SAEAYKAIIKA-LC 903 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~--~~~~~~~l~~~-~~ 903 (989)
.....|+++.|..+++...+. .|... .-..-+....+.|+.+.+. +++.........+ ....+...++. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 455678999999999999883 37655 3333456677888888888 5554444321111 12222233332 34
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
-.++.+.|..++.++.+..|+ +-..|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 568999999999999998876 7777777777766665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.76 Score=43.21 Aligned_cols=186 Identities=16% Similarity=0.050 Sum_probs=120.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..|-..|-+.-|.--|.+.+...|.-+.+++.|+-.+...|+++.|.+.|+...+....-+-...|.-|..| --|++.-
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~L 151 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKL 151 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHh
Confidence 445667888889999999999999888999999999999999999999999999865443444445444433 5689999
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPAT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMI-DAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 882 (989)
|.+=|.+.-+.+ +.|+ ..|..+.. ..-+..+|..-+.+--+ ..|..-|...+ ..+. |+..+ ..++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL--gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL--GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH--hhccH-HHHHHH
Confidence 988777766542 3333 23433332 23467777655444332 22334443322 2222 22211 123333
Q ss_pred HHhCCCC------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 883 IFDKRMP------ISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 883 ~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.+.... .=.++|..++.-+...|+.++|..+|+-++..+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3332111 113578889999999999999999999887654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=40.32 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=67.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE---AYKAIIKALCKREEY 908 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 908 (989)
...|+.++|+..|..+.+.|...=.. ............|+..+|...|+++-...+.|... +...-+..+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666665532211111 12223345556677777777777666543333322 222233445666777
Q ss_pred HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 909 SEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
++.....+-+...+...-..+...|+-+-++.|++..|..+|+.+.+..-.|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7666666655433322234445566777777777777777777665433333
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.85 Score=43.51 Aligned_cols=203 Identities=14% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAML- 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 779 (989)
++.++..+..++..+..... .+.-.+.+++|.++|.+.-.. |--..+++.|=..|.+.-
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~--------------yklaK~w~~AG~aflkaA~ 62 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANM--------------YKLAKNWSAAGDAFLKAAD 62 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHH
Confidence 45666666666532222221 334456788888888776432 111122222222222221
Q ss_pred ---HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHH
Q 001966 780 ---EEQVNPNH-DTYTTLINQYCKVQNMEKAKQLFLEMQQR----N-LKPATITYRSLLNGYNRM-GNRSEVFVVFEEML 849 (989)
Q Consensus 780 ---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 849 (989)
+.|...|. .+|.-..++| +.+++++|.+.++..++- | +..-......++..|... .+++.|+..|++.-
T Consensus 63 ~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 63 LHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11222222 2233333333 444666666666554431 0 111112233455555443 56777777777776
Q ss_pred h--CCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------HHHHHHHccCCHHHHHHHHHHH
Q 001966 850 G--KGIEPDNF---TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK------AIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 850 ~--~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+ .|-..+.. .+.-.+..-...+++.+|+++|+++.......+.--|. .-+-++.-.++.-.+...+++-
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 6 22222211 22223344445567777777777776654432222121 1122222235666666666666
Q ss_pred HHCCCc
Q 001966 919 GESGFR 924 (989)
Q Consensus 919 ~~~~~~ 924 (989)
.+..|.
T Consensus 222 ~~~dP~ 227 (288)
T KOG1586|consen 222 QELDPA 227 (288)
T ss_pred HhcCCc
Confidence 666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.027 Score=38.78 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
++..++..|.+.|++++|++.++++++..|. |..+|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4555666667777777777777777766655 666666554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=6 Score=45.42 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 157 VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPS--LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
....-+....+..+++-|+.+...- +..++ ........+-|.+.|++++|...|-+.+. ...|. .+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~----~le~s-----~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG----FLEPS-----EV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc----cCChH-----HH
Confidence 3455677778888888888876543 33333 12233455667888999999988888775 43332 34
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRL 314 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 314 (989)
|.-|....+..+-..+++.+.+.|. .+..--..|+.+|.+.++.++-.++.+.-. .|.. ..-.-..+..+.+.+-+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5556666677777788888888877 556666778889999888888777666544 3321 11233455556666666
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001966 315 GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDEL 359 (989)
Q Consensus 315 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (989)
++|.-+-.+... +.+....++. ..|++++|.+.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 666665554432 3444444443 457788888877765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.73 Score=49.38 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
+..+.+.-++.-+++++.++.-..+|..|+. .......+|.+++++.++.|-. .+..- ......|. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~ 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------F 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------h
Confidence 3445556666666666665544444433322 2234467777777776643210 01000 00001111 1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 810 FLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
++........|-..+-..++.++.+.|+.+||++.+++|++ ..|. .. ...+|+.++...+.+.++..++.+--+.
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111212223333445677777778888888888888876 2332 22 5566777888888888888887775443
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1 Score=41.94 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATI---TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY-----YVMIDAHCKEGNVMEA 876 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~A 876 (989)
+.....+++...+ +-+.. +-..++..+...|++++|...++..+. .|.+..+ ..|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665532 12211 223455678899999999999999886 3333333 3356888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++...+.+ ..+.....-++++...|+-++|+.-|+++++..+.
T Consensus 146 L~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998876543 23444556789999999999999999999998744
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.47 Score=50.78 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.+-..++.++-+.|+.+||++.++++++..|.. +..+...|+.++...+.+.++..++.+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334456666777777777777777777655442 3446677777777777777777777765
|
The molecular function of this protein is uncertain. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.41 E-value=7.5 Score=45.55 Aligned_cols=192 Identities=10% Similarity=0.076 Sum_probs=116.0
Q ss_pred HHHHHHhhhhcCCCC-CChHhHHHHHHHHh-cCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHH
Q 001966 83 LSFFHWSERQMGTCQ-NDLKVLSLLFVVLC-NCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNM 160 (989)
Q Consensus 83 l~ff~~~~~~~~~~~-~~~~~~~~l~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (989)
+.-+.-+.++...+| ....++..++.+|. ...++++|+..+.+.+..... ..+.+. ....-..
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~-------------k~~~~~l 105 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL-------------KFRCQFL 105 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH-------------HHHHHHH
Confidence 333333443444433 25678899999998 888999999999998762211 111110 0123346
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCC----CCCCCHHhHHHH-HHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHH
Q 001966 161 LIDGYRKIGLLDEAVDLFLCDTGC----EFVPSLFSCNAL-LRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVI 235 (989)
Q Consensus 161 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (989)
+++.|.+.+... |....+..++. +..+-...|..+ +..+...+++..|.+.++.+..+......+-+.++-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 678888777766 88887776432 222223334333 222333479999999999988732112334455555555
Q ss_pred HHH--HhcCChhHHHHHHHHHhhCC---------CCCChhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 001966 236 DAY--FKVRNAEEGKRVFSEMGEKG---------CRPNVATYNVVIGGLC--RVGFVDEAVELKNSMV 290 (989)
Q Consensus 236 ~~~--~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 290 (989)
.+. .+.+..+++.+..+++.... ..|...+|..+++.+| ..|+++.+...+.++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544 45677888888888774321 2356778888887665 5778777776655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.8 Score=44.36 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS------- 891 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------- 891 (989)
..+|...+..+.+.|+++.|...+.++...+..+ .......-++.+...|+.++|+..++..+......+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 4577888888888888888888888887632111 223444456777788888888888877776211100
Q ss_pred --------------------------HHHHHHHHHHHHcc------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 892 --------------------------AEAYKAIIKALCKR------EEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 892 --------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
..++..++.-.... ++.+++.+.|.++.+..+. ...+|..++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHH
Confidence 11233333333334 6677777777777777665 55666666665443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.9 Score=42.27 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 720 VYNALLSGCCKEEKL---EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE 781 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 781 (989)
++..++.+|...+.. ++|..+++.+....+..+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 34444555554444433444444445555556666666666666643
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.017 Score=36.92 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
|+++++.+|. +..+|..++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555 6666666666666666666664
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.1 Score=47.71 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
++|+.-|++++..+|. ...++.+++.+|...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 3444444444444433 445555666665444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.5 Score=38.37 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHH
Q 001966 730 KEEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD---TYTTLINQYCKVQNME 804 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 804 (989)
+.+..++|+.-|..+.+.|. -...+.........+.|+...|...|+++-.....|... .-..-.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555555444 222233334444555566666666666655433333221 0111112234556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN 857 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 857 (989)
+.....+-+...+-+.-...-..|..+-.+.|++.+|...|.++.+....|.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 65555555544332223334455556666666666666666666654344443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.70 E-value=11 Score=43.55 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH
Q 001966 594 IAEAISKFRCMLARGILPEVQTYSVLIN----G-LSKKLELREALGIFLELLE 641 (989)
Q Consensus 594 ~~~A~~~~~~~~~~~~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~~ 641 (989)
...|.+.++...+.|. ...-..+.. + +....+.+.|+.+|..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4556666666666542 222222211 2 3344566666666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.63 E-value=7.3 Score=42.13 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--------
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP---ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------- 856 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------- 856 (989)
.+|..++..+.+.|+++-|...+.++...+..+ .+.....-+..+...|+..+|+..++..++.....+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 456666666666666666666666665532111 223333444455556666666666665555101100
Q ss_pred ------------------H-------HHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 857 ------------------N-------FTYYVMIDAHCKE------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 857 ------------------~-------~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
. ..+..++.-.... +..+++.+.|+++.+..+. ...+|..++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFND 303 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHH
Confidence 0 1233333333344 7788889999999887654 5566776665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.59 E-value=6.5 Score=40.63 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHcCChHHHHHHHHhhcCCC--CCCC-----HHhHHHHHHHHHcCC-ChHHHHHHHHHHHhcc----CCC-CCcC-----
Q 001966 166 RKIGLLDEAVDLFLCDTGCE--FVPS-----LFSCNALLRDLLKGK-KMELFWKVWAKMNKMN----AGG-FEFD----- 227 (989)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~--~~~~-----~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~----~~~-~~~~----- 227 (989)
.+.|+++.|..+|.++.... ..|+ ...|..+...+...+ +++.|..+++++.++- ... ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788899999888876532 2232 123444555566666 8888888888877631 101 2222
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 001966 228 VYSYTTVIDAYFKVRNAE---EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEK 292 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 292 (989)
..++..++.+|...+..+ +|..+++.+..... .....+-.-+..+-+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 224455555555554433 23444444433211 11233333344444455555555555555543
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=7 Score=40.92 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKE-----G--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----R 905 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 905 (989)
+..+|..+|+++.+.|..+-..+...+...+... - +...|...+.++...+ +......++..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5666666666666655333222333344333332 1 2236777777777665 55566666655533 3
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCCcc
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG---------------VMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p 960 (989)
.+.++|...|.++.+.+ +......++ .++..| +...|...+...-..+...
T Consensus 205 ~d~~~A~~wy~~Aa~~g---~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG---DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 47788888888888777 356666666 666555 6677777777776655444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.56 E-value=7.1 Score=40.95 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=65.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
-+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-..+... + .++..|..++..|.+.|+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCCCH
Confidence 3444556677777666655543 35677777777777777777766654332 1 2345667777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
.+|..++.++ + +..-+..|.+.|++.+|.+.--
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777776652 1 1344566777777777766533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.47 Score=41.64 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 001966 330 KLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS-GNQIDLVIYNTLLK 376 (989)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~ 376 (989)
.|+..+..+++.+|+..|++..|.++.+.+.+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555544443 33333344444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=8.9 Score=41.41 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=72.7
Q ss_pred CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 853 IEPDNFTYY-VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK--REEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 853 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
..|+..++. .+.+.+.+.|-+++|.+.|..+... |+|+...+..++..-.. .-+...+..+|+.|+..-.. |+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~-d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA-DSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC-ChHH
Confidence 445555443 3567777888899999999888876 45688888877765322 23488888888888766544 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|......-...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777776788888888888877764
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.39 E-value=2 Score=38.91 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..++..+...+.......+++.+...+. .+....+.++..|++.+ .++.++.++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556666666666666665542 45556666666666542 3344444432 11222233455555556
Q ss_pred CCHhHHHHHHHHH
Q 001966 836 GNRSEVFVVFEEM 848 (989)
Q Consensus 836 g~~~~A~~~~~~~ 848 (989)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.18 Score=50.54 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
-++-|.++|++++|+..|...+. ..| +..++.+-+.+|.+...+..|..-.+.++..+-. -..+|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHh
Confidence 34556777777777777777766 666 4446666667777777777777766666655322 3445666666666667
Q ss_pred CHHHHHHHHHHHHHCCCc
Q 001966 907 EYSEALRLLNEMGESGFR 924 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~ 924 (989)
+..+|.+-++.++...|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 777777777777776655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.34 E-value=12 Score=42.61 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK 869 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 869 (989)
.+--+..+...|+..+|.++-.+.. -||-..|-.-+.++...+++++-.++.+.... ...|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3344445566788888887766654 46666777777888888888887777665432 2345556677888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
.|+.+||.+++-+.-. .. -.+.+|.+.|++.+|.+..-+
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888876532 11 456778888888888887754
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.1 Score=33.26 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=12.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.8 Score=42.17 Aligned_cols=164 Identities=12% Similarity=-0.030 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN----RMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EG 871 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g 871 (989)
.+.+..|...+......+. + .....++..|. ...+..+|..+|+.+.+.| .......|+..+.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~-~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD-A--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC-h--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 4455555555555554221 1 22222333322 2345788888888776644 23344445555554 34
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----c
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-------EYSEALRLLNEMGESGFRLGFASCRTVANDFLR----E 940 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 940 (989)
+..+|.+.|+++.+.|..+.......++..+..-+ +...|...+.++.+.+ ++.+...|+..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 89999999999999875422233566666665531 3448999999999887 78888899988765 3
Q ss_pred CChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCC
Q 001966 941 GVMDYAAKVLECMASFGWVSNSISLADIVKGENSGV 976 (989)
Q Consensus 941 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 976 (989)
.+.++|..+|+++-+.|- ....+.+. .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 478999999999987764 55555565 444444
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.57 Score=44.84 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYY-VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY 908 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 908 (989)
..|....+++.|+..|.+.+. ++|...+|. .-+.++.+..+++.+..--.++++..+. .......++..+.....+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccc
Confidence 345666678888888888887 788876544 4567777788888888888777776433 445666777778888888
Q ss_pred HHHHHHHHHHHHC----CCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 909 SEALRLLNEMGES----GFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 909 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
++|+..+.++... .+.+...+...|..+-...=...++.++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888887432 23333445555555444444444555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.15 E-value=15 Score=42.96 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=95.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNPNH-------DTYTTLIN-QYCKVQNMEKAKQLFLEMQQR----NLKPATITYRSL 828 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l 828 (989)
......++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344566777777777766543112111 12333322 223467777777776666553 112234455666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---HHHHH--HHHHHhcCC--HHHHHHHHHHHHhCC--CC----CCHHHH
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF---TYYVM--IDAHCKEGN--VMEALKLKDLIFDKR--MP----ISAEAY 895 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~--~~----~~~~~~ 895 (989)
+.+..-.|++++|..+.++..+..-.-+.. .|..+ ...+..+|+ +.+.+..+....+.. -. +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 666777777777777766655511111222 12111 245556663 333333333332220 01 111233
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHCCCccCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 896 KAIIKALCK-REEYSEALRLLNEMGESGFRLGFA--SCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 896 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
..+.+++.+ .+...+|..-++-.....+.+... .+..|+.++...|+.++|...+.++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 334444433 223333333333333333332222 22367777888888888877777776543333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.62 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHH
Q 001966 434 LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITR-GLKPNAIIYTNLVS 481 (989)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 481 (989)
..|+..+..+++.+|+..|++..|.++.+...+. +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555555555555555666665555555443 44444455555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.98 E-value=3.6 Score=35.54 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001966 375 LKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN 433 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (989)
+..+.+.|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444555555555555544322 4444444555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=16 Score=42.67 Aligned_cols=317 Identities=11% Similarity=-0.002 Sum_probs=161.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
...+.|++..+..+...+..... .....|-.+...+ .....++...++.+-. +.+.....-......+.+.+++..
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHH
Confidence 44567888888777776643211 1223333333221 1223444444333311 112122222333444556667766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHH
Q 001966 667 AFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLE--QALELFRDM 744 (989)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 744 (989)
....+. . .+.+...-+.+..+....|+.++|......+=..| ...+.....+...+.+.|... ...+=+..+
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 555221 1 23455555667777888888887877777665554 334566777777777666543 333333333
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE---------EQVNPNHDTYTTLINQY--CKVQNMEKAKQLFLEM 813 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 813 (989)
...+. ......+...+. .......+.+..+.. ....|+...-..++-++ ....+.+.|..++...
T Consensus 192 l~~~~--~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~ 267 (644)
T PRK11619 192 MKAGN--TGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSL 267 (644)
T ss_pred HHCCC--HHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33332 222222333221 111111111111111 11112221111112122 2344568888888876
Q ss_pred HHC-CCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 814 QQR-NLKPAT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 814 ~~~-~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
... .+.+.. .++..++......+..++|...+..... ...+.....-.+......++++.+...+..|..... -
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~--~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~ 344 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM--RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-E 344 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc--ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-c
Confidence 543 233332 2344454444443336677777776544 222333333344445578888888888888755432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
.....+++++++...|+.++|...|+++..
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 566778888888888999999999888743
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.23 Score=49.74 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
--++.|.++|++++|++.|..... ..| |.+++..-+.+|.+..++..|..--..++. ++-... .|..-+.+-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARES 177 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 357889999999999999999887 556 899999999999999999999888888776 333322 67777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
.|+..+|.+-++.+++..+. +.+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~-~~EL 201 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPK-NIEL 201 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcc-cHHH
Confidence 89999999999999987655 4443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.9 Score=35.36 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=66.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT---YVNLIYGFSAAKRLGD 316 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~ 316 (989)
-.|..++..++..+.... .|..-||.+|--....-+.+-..+.++..-+. -|... ...++..|.+.|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 456777777777777664 45556666665444444444455555544332 12111 1223333333222
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001966 317 VRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIR 396 (989)
Q Consensus 317 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 396 (989)
+..-....++.+.++|+-+.-.++..++.+. -+++....-.+..+|.+.|+..+|-+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2222333445566666666666666666542 245566666666777777777777777777666
Q ss_pred CCC
Q 001966 397 MGI 399 (989)
Q Consensus 397 ~g~ 399 (989)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.15 Score=32.57 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=13.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34444444555555555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.045 Score=55.03 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=57.4
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|.+++|++.+...++ ++|... .|..-..++.+.+++..|++-+..+++.++. ....|..-+.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 44556666666665555 455444 3333445555555566666655555554433 3334444444555556666666
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
..+..+.+.+.+ ..+-..|-.+.-+.+..++-...+++.+
T Consensus 203 ~dl~~a~kld~d--E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYD--EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhcccc--HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 666555555433 2222233333444444444444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.2 Score=47.00 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 877 (989)
.+.|+++.|.++.++ .++...|..|+......|+++-|.+.|++..+ +..|.-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345555555544322 22344555555555555555555555554332 233333444455554444
Q ss_pred HHHHHHHh
Q 001966 878 KLKDLIFD 885 (989)
Q Consensus 878 ~~~~~~~~ 885 (989)
++.+.+..
T Consensus 394 kl~~~a~~ 401 (443)
T PF04053_consen 394 KLAKIAEE 401 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.16 Score=32.32 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
+.++..+|.+|...|++++|++.++++++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 357899999999999999999999999764 564
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.1 Score=37.79 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..-...++.+++..++..+.- +.|....... -++.+...|+|.+|+.+++++.+..+. .+..-..++.++..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHH
Confidence 3344445677888888888888887 7887764444 357788889999999999888766533 44444444555555
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+. +=..+.+++++.+++
T Consensus 91 ~~D~-~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 91 LGDP-SWRRYADEVLESGAD 109 (160)
T ss_pred cCCh-HHHHHHHHHHhcCCC
Confidence 5543 223334445555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.10 E-value=22 Score=41.62 Aligned_cols=205 Identities=13% Similarity=-0.066 Sum_probs=108.8
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCC----C--C-HHhHHHHHH-HHHcCCChHHHHHHHHHHHhccCCC-CC
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFV----P--S-LFSCNALLR-DLLKGKKMELFWKVWAKMNKMNAGG-FE 225 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~--~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 225 (989)
|...-.-+.......++++|-.+..++...-.. + + ...++.+-. .....|+++.|..+-+..+.+-++. ..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 333333344556678888888888765432111 1 1 123443322 2355778888988888888765555 66
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHH--HHHHccCC--hhHHHHHHHHHHHCCC---C
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVA---TYNVVI--GGLCRVGF--VDEAVELKNSMVEKGL---V 295 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~g~--~~~A~~~~~~m~~~g~---~ 295 (989)
+.+..+..+..+..-.|++++|+.+.++..+..-.-++. .|..+. ..+..+|+ +.+....|........ .
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 677788888888888899999988888776642222332 222222 23445663 2233333333322210 0
Q ss_pred ---CCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCcCHHhH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 296 ---PDSYTYVNLIYGFSAAKRLGDVRLVLSE----LIGKGLKLDTVAY--YALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 296 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
+-..++..+..++.+ ++.+..-... -......|-...+ ..|+......|++++|...++++...
T Consensus 575 ~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 112233334444333 3333322222 2222222222222 25566677777888877777777654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.08 E-value=39 Score=44.39 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 583 SIVDGYCKEGNIAEAISKFRCMLARGI--LPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.+..+-.+++.+.+|...++.-..... .-...-+..+-..|...++++....+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 344566677888888888877311100 11122333444477777887777666553111 111 2233445677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL-LSGCCKEEKLEQALE 739 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 739 (989)
.|+++.|...|+.+...+ ++...+++.++......|.++..+...+..... ..+....|+.+ +.+-.+.++++...+
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 888888888888888763 223566676666666667777776665555443 23333344433 223345566655544
Q ss_pred HH
Q 001966 740 LF 741 (989)
Q Consensus 740 ~~ 741 (989)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=8.9 Score=36.97 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=8.6
Q ss_pred hcCCHhHHHHHHHHHHh
Q 001966 834 RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~ 850 (989)
..+++.+|+.+|++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.22 Score=31.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.75 E-value=7.4 Score=35.21 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKS 381 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 381 (989)
.+|..+.+.+........++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555544442 3444555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.12 Score=33.60 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=8.4
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 001966 932 TVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~ 952 (989)
.||.+|.+.|++++|++++++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.11 Score=33.72 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..|+..|.+.|++++|+.+|++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999966443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.6 Score=46.41 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCCcc----
Q 001966 865 DAHCKEGNVMEALKLKDLIFD---KRMPIS-----AEAYKAIIKALCKREEYSEALRLLNEMGE-------SGFRL---- 925 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~---- 925 (989)
..+...|++.+|.+++...-- .|.... ...|+.++....+.|.+.-+..+|.++++ .+.+|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 555666777777776644321 111111 12356666677777777777777777764 11111
Q ss_pred ------CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh
Q 001966 926 ------GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE 972 (989)
Q Consensus 926 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 972 (989)
...+.+.+|..|...|+.-.|.+.|.+.... +..|+..|..+++..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 2445667777788888888888888777643 566777887777765
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.7 Score=42.45 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCC-------HHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 893 EAYKAIIKALCKREE-------YSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
..+..+++.|...|+ +..|...|+++.+....| +..+.+.+|..+.+.|++++|.+++.+++..+-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 345556666666666 344555555555443221 24566788888888899999999888887653333
Q ss_pred cchhHHHHHhh
Q 001966 961 NSISLADIVKG 971 (989)
Q Consensus 961 ~~~~~~~l~~~ 971 (989)
....+...++.
T Consensus 199 ~~~~l~~~AR~ 209 (214)
T PF09986_consen 199 KEPKLKDMARD 209 (214)
T ss_pred CcHHHHHHHHH
Confidence 33344444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.6 Score=41.26 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.+..++.-|.+.|+.++|++.|.++.+....|... .+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444333 344455555555565555555555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.2 Score=43.81 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 001966 349 VEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG----------------KMEKAREVLNEIIRMGIEPNSRTYTSLIQG 412 (989)
Q Consensus 349 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 412 (989)
++-....++.|.+.|+..|..+|+.|+..+-|.. .-+=+++++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3333344444555555555555555554433211 123355666666666666666666666666
Q ss_pred HHhcC
Q 001966 413 YCRMR 417 (989)
Q Consensus 413 ~~~~g 417 (989)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 55544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.07 E-value=51 Score=43.36 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 654 LITSFCKICDVDKAFQLYEEM----CEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC 729 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 729 (989)
+..+-.+++.+.+|...++.- .+. .....-|-.+...|...++++....+...-.. .|+ ....+....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHH
Confidence 333445566666666666652 111 11122233334466666666666655553111 111 122333445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
..|++..|...|+.+...+++....+..++......|.++..+...+...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 56777777777777777666655555555555555555555555444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.2 Score=45.75 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 335 AYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
-.+.++..+-+.|-.+.|+.+-..-.. --....+.|+++.|.++.++ .++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355666666666666666654432211 12223456666666665432 234556666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 001966 415 RMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGK 494 (989)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 494 (989)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665432 3445555666666666555555555443 13333334444555555555
Q ss_pred HHHH
Q 001966 495 LVER 498 (989)
Q Consensus 495 ~~~~ 498 (989)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.92 E-value=5.3 Score=39.14 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=99.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH-
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR-MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM- 874 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~- 874 (989)
.+..+-+.|+++-...+..+ +.+..+|..--..+.. ..+..+-++.+.++++ -.|.+. .|..--......|++.
T Consensus 54 ~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e--~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIE--DNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred hccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHhcCccc
Confidence 45566778888888777732 2232233322222222 2246677777787777 556444 5555444555566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh------HHHH
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD------YAAK 948 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~ 948 (989)
.-+++.+.|+..+.+ +..+|..--+++..-+.++.-+.+..++++.... +-.+|+..--.......+. .-..
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 667788888876655 7778888888888888888888888888877655 5555554322222222221 1222
Q ss_pred HHHHHHhCCCccc-chhHHHHHhhhhc-CC
Q 001966 949 VLECMASFGWVSN-SISLADIVKGENS-GV 976 (989)
Q Consensus 949 ~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g 976 (989)
...+++ .+.|+ ...|.-|...+.. .|
T Consensus 209 yt~~~I--~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 209 YTKDKI--LLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHH--HhCCCCccHHHHHHHHHHhccC
Confidence 333333 35775 4455555555542 55
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.80 E-value=4.4 Score=36.85 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATIT-YRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.+.++.+++..++..+.- +.|.... -..-+..+...|++.+|..+++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345566666666666655 4454332 22233445556666666666666554
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.55 E-value=30 Score=39.53 Aligned_cols=292 Identities=11% Similarity=0.076 Sum_probs=147.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 622 GLSKKLELREALGIFLELLEKGLVPDVDTY----NSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
+....|+..+|.+++.--+.+.-.+ ...| ..+.-++...|......+++.+.++..-.+....-.+|.-++...|
T Consensus 366 GvIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred ceeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 3456778888888877665441111 1111 1122234455555557777776665532222223233433444334
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCH-HHHHH-HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNA--LLSGCCKEEKL-EQALE-LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.- -.++|+.+.+.=...+.++-.+ +..+.+-.|.+ .+|++ ++.-..+.......--..+.-++.--|+.++|..
T Consensus 445 Sa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 445 SA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred cc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHH
Confidence 22 2334444433211112222111 22223333322 23332 3333333222222223344556677788889999
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 001966 774 LLDAMLEEQVNPNH--DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK 851 (989)
Q Consensus 774 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 851 (989)
+.+++.... .|-. .-.-+++.+|+..|+-....+++.-... +...|..-+..++-++.-..+.+....+..-+.+.
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses 600 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES 600 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHHHhhh
Confidence 999988542 2211 1123456678888876666666655443 23455555666666676777888888877766653
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccC-----CHHHHHHHHHHHHHC
Q 001966 852 GIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKRE-----EYSEALRLLNEMGES 921 (989)
Q Consensus 852 g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 921 (989)
.+|... +...|+-+|.-.| ..+|+.+++-|... +. +. .+.-.++-..+++. ++..-++.+.+.+..
T Consensus 601 -~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D-~~-~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 601 -YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSD-PV-DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred -cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcC-hH-HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 456544 3334445554444 57889999888752 11 21 22333333444443 456666667666644
Q ss_pred C
Q 001966 922 G 922 (989)
Q Consensus 922 ~ 922 (989)
.
T Consensus 677 K 677 (929)
T KOG2062|consen 677 K 677 (929)
T ss_pred h
Confidence 3
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.39 E-value=3 Score=40.14 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM 874 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 874 (989)
|....+++.|+..|.+.+. +.|+.. .|..-+.++.+..+++.+..--++.++ +.|+.. ....++........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4445567777777766666 567653 456667777777788888777777777 777766 5555667777777788
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 875 EALKLKDLIFD----KRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 875 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
+|+..++++.. ..+.+....+..|..+-.+.=+..++.++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88887777743 23444556666666655555555555554443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=21 Score=36.86 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+..+....+.++.+.|+ .+|+..+-+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 33444444444444444 334444444333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=39 Score=39.59 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 001966 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYC 589 (989)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (989)
.|.....+ .+.|++..+.++...+...-. .....|..+.... .....++...++++-. +.+.....-......+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHH
Confidence 34444433 467788887777666543211 1222233222211 1223454444444322 11222233334444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 590 KEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
+.+++...+..+ .. .+.+...-.....+....|+.++|......+-..|.. ....+ -.
T Consensus 111 ~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~c----------------d~ 168 (644)
T PRK11619 111 RREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNAC----------------DK 168 (644)
T ss_pred HccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHH----------------HH
Confidence 666776665522 11 2345555566677777778777676655555443322 12223 33
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD-GSVYNALLSGCCKEEKLEQALELFRDMLEKG 748 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 748 (989)
+|+...+.|.-.+..++.- +......|+...|..+...+. ++ ......++..+.+ ...+..++...
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~---p~~~~~~~~~~---- 235 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQND---PNTVETFARTT---- 235 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHC---HHHHHHHhhcc----
Confidence 4444444443333344433 334455677777777666552 22 2223333333332 22332222221
Q ss_pred CCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 749 LAST--LSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNH--DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI 823 (989)
Q Consensus 749 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 823 (989)
+++. .....++-.-....+.+.|...+.+.... ++.++. ..+..++......+..++|...++..... ..+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcH
Confidence 1111 11111111122345678999999987543 233322 33444443334433367777777765542 23444
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
....-+......++++.+...+..|-.. ..-...-.+=++.++...|+.++|...|+++..
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455555556899999999999887552 122333444467888889999999999999853
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.69 E-value=2.8 Score=39.63 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHh--HH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FAS--CR 931 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~--~~ 931 (989)
.+..++.-|++.|+.++|++.|.++.+....+ -...+..+++.....|++..+...+.++........ ... -.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 67788899999999999999999998874433 345678889999999999999999988865432222 111 12
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 001966 932 TVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
.-|-.+...+++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 33445667789999988886553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.4 Score=30.19 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=12.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..++.++.+.|++++|.+.++++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 334444444444444444444444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.34 E-value=25 Score=36.53 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCC--
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCK--V----QNMEKAKQLFLEMQQRN---LKPATITYRSLLNGYNRMGN-- 837 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~-- 837 (989)
++.+.+++.+.+.|+..+..+|.+....... . ....+|..+|+.|.+.. -.++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666666555443322222 1 23456777777777642 12334444444433 2222
Q ss_pred --HhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 838 --RSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGN--VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 838 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
.++...+|+.+.+.|....+. ....++........ ...+.++++.+.+.+.++....|..+|-...-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355666777777767776555 22222222211111 346677777777777777666666665444333333243
Q ss_pred HHHHHH
Q 001966 912 LRLLNE 917 (989)
Q Consensus 912 ~~~~~~ 917 (989)
...+.+
T Consensus 237 ~~~i~e 242 (297)
T PF13170_consen 237 VEEIKE 242 (297)
T ss_pred HHHHHH
Confidence 333333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.36 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
++..+|.++.+.|++++|.+.++++++. -|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 5788999999999999999999999865 454
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.18 E-value=2.4 Score=41.68 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001966 632 ALGIFLELLEKGLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 632 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 662 (989)
+++++++|...|+.||..+-..+++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 3444444444444444444444444444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.02 E-value=2.5 Score=42.70 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
++..++..+...|+++.+.+.++++++..+- +...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5555667777777778888888777777655 777777777788888888888877777654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=31 Score=37.24 Aligned_cols=117 Identities=18% Similarity=0.051 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH--HHHHHH
Q 001966 868 CKEGNVMEALKLKDLIFDK-RMPIS--------AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC--RTVAND 936 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~ 936 (989)
.-.|++.+|++-...|.+- .-.|. +.+...++.-++.-|-++.|...|..+.+...+.|..++ ..++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4479999999988888753 11222 223444555556778999999999998877655455443 578999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcccc----------hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 937 FLREGVMDYAAKVLECMASFGWVSNS----------ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~~~~~~p~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
|.+.|+.+.-.++++.+- .||+ .+++..+-....++++.||.+.+.+.
T Consensus 414 YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999888777777552 2222 22344444457889999999888753
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.56 Score=29.79 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+|..++..|.+.|++++|...|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444444443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.61 E-value=44 Score=38.36 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
.+--+.-+...|+..+|.++-.+. --||-..|..-+.++...++|++-+++-+... .+..|.-.+..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 334444455666666666665554 34666666666667777777776666554432 23445566666777
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
+|+.+||.+++-+.-.. .....+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 77777777776542111 14556667777776665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.31 E-value=3.7 Score=41.50 Aligned_cols=75 Identities=9% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 001966 720 VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE-----EQVNPNHDTYTTLI 794 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 794 (989)
++..++..+...|+.+.+.+.+++.+...|.+...|..++.+|.+.|+...|+..|+++.. .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666665543 35555554444333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.02 E-value=7.4 Score=36.07 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001966 838 RSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
+++|...|+++.+ .+|++..|..-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 5677777777777 7888888877665552 4566666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.71 E-value=5.3 Score=35.63 Aligned_cols=79 Identities=19% Similarity=0.020 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++..-...++.+++..+++.+.-..|+ ..+.-..-++.+...|++.+|+.+++.+.+..+. .+..--.++.++...|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 335555689999999999999887766 6666667778899999999999999999888755 46666677888888887
Q ss_pred h
Q 001966 943 M 943 (989)
Q Consensus 943 ~ 943 (989)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.69 E-value=18 Score=38.24 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh---cCChhHHHHHH
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR---EGVMDYAAKVL 950 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 950 (989)
+.-+.+++++++.++. +...+..+...+.+..+.++..+.+++++...|. ++..|..+++.... .-.+.....+|
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455566666666543 5666666666666666666667777777766655 66666555554333 22344444444
Q ss_pred HHHHh------CCC------ccc-----chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 951 ECMAS------FGW------VSN-----SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 951 ~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.+.++ .+. .|+ -..+..+...+.+.|.++.|..+++.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 43332 111 111 123355666677888888888877654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.61 E-value=5 Score=35.82 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=54.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+..-...++.+++..++..|.- +.|+..-... -++.+...|+|++|++++.++.+.+.. .+..-..++.++...||
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 3344568999999999999988 8887774433 457888999999999999999876533 23333344445555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=34 Score=35.33 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHHHhcCC
Q 001966 402 NSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 402 ~~~~~~~li~~~~~~g~ 418 (989)
|..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33444444444444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.82 E-value=7.2 Score=33.99 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 854 EPDNFTYYVMIDAHCKEGN---VMEALKLKDLIFD-KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 854 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+...+-..+++++.+..+ ..+.+.+++.+.+ ..+.-..+....|+-++.+.+++++++++.+.+++..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4555566666777766654 4566677777775 333334455566666777888888888888777777655
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.64 E-value=46 Score=38.93 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 001966 865 DAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~ 883 (989)
.-+...|++++|++.++++
T Consensus 513 f~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhC
Confidence 4456778888888777665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.57 E-value=14 Score=39.76 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=53.0
Q ss_pred HHHhcCCHHHHHHHHHHHHH---CC--CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-------CCCCCCHH--
Q 001966 796 QYCKVQNMEKAKQLFLEMQQ---RN--LKPA---TITYRSLLNGYNRMGNRSEVFVVFEEMLG-------KGIEPDNF-- 858 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~---~~--~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~~-- 858 (989)
.+...|++.+|.+++...-- .| +.|. -..||.++-.+.+.|.+.-+..+|.+++. .|+.|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34455666666666543311 11 1221 11245555556666666666666666653 23333211
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 859 --------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 859 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++.+-.+...|++-.|.+.|.+++..- ..++..|..++.+|..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 12223344555566666666666655442 2255566666555543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.34 E-value=5.1 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.+..+..++...|++-++++.-.+++...|. +..+|+..+.+....=+..+|.+-+.++++. .|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--Chh
Confidence 4455566666777777777777777777766 7777777777777777777777777777553 554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.30 E-value=40 Score=35.04 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCC---
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCK--EE----KLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNK--- 767 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~--- 767 (989)
+...+++.+.+.|+.-+..++.+....... .. ....|.++|+.|.+..| ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566666666666665555443322222 11 24567777777777655 222233322211 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 768 -LQEAHQLLDAMLEEQVNPNHD-TYTTLINQYCKVQN---MEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 768 -~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
.+++..+|+.+.+.|+..+.. -+.+-+-+++.... ..++.++++.+.+.|+++....|..++-.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 244555566666655554322 12222222221111 33556666666666666665555544433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.10 E-value=7.1 Score=37.02 Aligned_cols=75 Identities=15% Similarity=0.020 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---ccCHHhHHHHHHHHHhcCChhHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF---RLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
.-++|.+.|-++...+.--+++....|+..|. .-|.++|+.++.++++... ++|+.++..|+.+|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777766665544446777777765444 6677888888887776532 356888888888888888888774
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.1 Score=47.85 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
-+....+.+.++.|+.+|.++++ ++|+...|.. -..++.+.+++..|+.-..++++..+. ....|..-+.++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 34556677788888888888888 7887664443 447778888888888888888877644 5566767777778888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHh
Q 001966 907 EYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++.+|...|++.....|. ++.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pn-d~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN-DPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcC-cHHH
Confidence 888888888887777766 4444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.81 E-value=1 Score=28.60 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|..++..|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
|
... |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.59 E-value=50 Score=35.43 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=120.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY-CKVQNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNR 838 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 838 (989)
-.|+.+++.+.+..+.....++....+..|+.+- ....+..+|+++|+...- ..|-.. ....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 4688899999888887666666777777777654 455678899999988765 345433 333344556778888
Q ss_pred hHHHHHHHHHHh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 839 SEVFVVFEEMLG-KGIEPDNFTY-YVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 839 ~~A~~~~~~~~~-~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+++..+..+... ....|=...+ ..+...+.+.++-..-. -+..++.. ++.--...|..+++.-.-.|+.+-|...-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~-~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA-RLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH-HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888887777766 2233322222 22233333333222111 23333332 34445678888888888899999998888
Q ss_pred HHHHHCCCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 916 NEMGESGFRL---GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 916 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
+++....... ...+...-+-+-.-..+.++|.+.+..+-...+.|.+..+
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L 333 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL 333 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH
Confidence 8887765321 1222223333334456677777777766555555544333
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.44 E-value=38 Score=35.87 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=78.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---cCCHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK---REEYSEALR 913 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 913 (989)
.+.-+.+++++++ .+|+.. .+..++..+.+..+.++..+.+++++...+. +...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~--~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALK--HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4556677777777 466655 4555667777777777777888888877655 77777766655443 235666666
Q ss_pred HHHHHHHCC------C------ccC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 914 LLNEMGESG------F------RLG-----FASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 914 ~~~~~~~~~------~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
+|.+.+..- . .++ ..++..+.......|-.+.|..+++.+++..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 666654321 0 001 22456677778899999999999999988766
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.38 E-value=1.2 Score=45.16 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME 875 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 875 (989)
....|.+++|++.|...++.+ ++....|..-..++.+.++...|+.-+...++ ++||.. .|-.-..+..-.|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 346778888888888888753 45566777777888888888888888888888 888776 55555566667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|.+.+..+.+.+..+....| +-.+.-..+..++-...+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 88888888887655444333 333344455555555555554433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.85 E-value=13 Score=32.46 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHH-CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 889 PISAEAYKAIIKALCKRE---EYSEALRLLNEMGE-SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.++......+++++.+.. +.++.+.+++++.+ ..|.-.-...+.|+-.+++.|+|+.++++.+..++. +||..-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 567788888999998765 57788899999986 444434556688999999999999999999999875 787544
Q ss_pred HHHH
Q 001966 965 LADI 968 (989)
Q Consensus 965 ~~~l 968 (989)
...|
T Consensus 107 a~~L 110 (149)
T KOG3364|consen 107 ALEL 110 (149)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.76 E-value=96 Score=37.95 Aligned_cols=133 Identities=21% Similarity=0.219 Sum_probs=75.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
-+.|.+++|+.++..=.+. -...|.+..+.+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 3445555555544322111 2234555555566677777777777654321 22456677778888887
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
.+..++....-.-...-..|+.-+...++.-+|-++..+.... | ...+..||+...+++|+.....
T Consensus 986 ~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 986 SLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 7766654321111112256677777788888887777766542 1 2334456666677777765543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.8 Score=46.40 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITY-RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
-++.+...+.++.|+.++.+.++ +.||...| ..-..++.+.+++..|+.=+.++++ ..|+.. .|..-+.++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhH
Confidence 35566778899999999999998 67875544 4445788899999999999999999 778766 677777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
+.+.+|+..++...... |+.......+.
T Consensus 86 ~~~~~A~~~l~~~~~l~--Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLA--PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHHhhhcC--cCcHHHHHHHH
Confidence 99999999999988754 44444444433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.37 E-value=16 Score=35.81 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 859 TYYVMIDAHCKEGN-------VMEALKLKDLIFDKRMPI-----SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 859 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+..+++.|...|+ ...|++.|+++.+....| ...+...++....+.|+.++|.+.|.+++.....
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34445566666666 344555666665442111 2345556777777888888888888887766533
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.94 E-value=33 Score=31.85 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=10.2
Q ss_pred HCCCCCChhhHHHHHHHHHhcCC
Q 001966 396 RMGIEPNSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 396 ~~g~~~~~~~~~~li~~~~~~g~ 418 (989)
+.+++|+...|..+++.+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.93 E-value=65 Score=35.26 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001966 681 PNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIE 760 (989)
Q Consensus 681 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 760 (989)
.|.....+++..+...-...-...+..+|..-| .+...+..++..|... ..++-..+++++++....+.+.-..|+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355666777788877777777778888888754 4677888888888877 4577788888888888878877777887
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNP-----NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYNR 834 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 834 (989)
.|.+ ++.+.+..+|.++...-++. -...|..+...- ..+.+....+...+++. |..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 77888888888887542211 123455554322 34566666666666553 333334455555566677
Q ss_pred cCCHhHHHHHHHHHHh
Q 001966 835 MGNRSEVFVVFEEMLG 850 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~ 850 (989)
..++++|++++..+++
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777777776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.9 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..|+.+|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888764
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.48 E-value=1.2 Score=26.25 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 001966 929 SCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+...++.++...|+.++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666655543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.36 E-value=7.1 Score=39.74 Aligned_cols=87 Identities=16% Similarity=-0.016 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
++-|.+..++..|...|.+.++. ++..+...|..-+.+....|++..|+.-..+++...|. +..+++.=+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Confidence 44455555555555555555543 22233344555555555555555555555555555555 555555555555555
Q ss_pred CChhHHHHHHH
Q 001966 941 GVMDYAAKVLE 951 (989)
Q Consensus 941 g~~~~A~~~~~ 951 (989)
.+..+|..+.+
T Consensus 167 e~~~~a~nw~e 177 (390)
T KOG0551|consen 167 ERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHh
Confidence 55444444333
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.28 E-value=2.4 Score=46.13 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=76.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 909 (989)
....|+...|...+..+.. ..|... ....|++...+.|....|-.++.+.+..... .+-.+..+++++....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhH
Confidence 3457888888888888776 566433 5666777788888888888888888776533 5667777888888888888
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.|++.++.+++..++ .+..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 888888888888777 7776666655444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.73 E-value=93 Score=36.12 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 236 DAYFKVRNAEEGKRVFSEMGEKGCRP---NVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
+-+.+.+.++||....+..... .| -...+...|..|.-.|++++|-.+.-.|... +...|-.-+.-+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3455566666666655554432 22 2345666677777777777777777776644 4555555555555544
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVK 345 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 345 (989)
.......++ -......+..+|..++..+..
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 443322221 111222455566666665554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=9.8 Score=40.55 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=80.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
.--...|++-.|.+-+...... .+.++.........+...|+++.+...+...-..--....+...+++...+.|++++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 3344567777776544444433 232333333333445567888888877766644322445566777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLL 829 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 829 (989)
|...-+-|+...+. ++.........-...|-++++...|+++...+ +|...-|...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~ 432 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccceeee
Confidence 88888888765554 44444443434455677888888888877643 33333343333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.09 E-value=8.7 Score=42.37 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001966 310 AAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKARE 389 (989)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 389 (989)
+.|+++.|.++..+.. +..-|..|.+...+.|++..|.+.|..... |..|+-.+...|+-+--..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555554444321 344455555555555555555555544432 2233333444444443333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 390 VLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (989)
+-....+.| ..|. + .-+|...|+++++.+++..
T Consensus 714 la~~~~~~g-~~N~-A----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQG-KNNL-A----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhc-ccch-H----HHHHHHcCCHHHHHHHHHh
Confidence 334444443 2221 1 1233445556555555544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.56 E-value=4.8 Score=43.98 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=89.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 001966 779 LEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF 858 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 858 (989)
..+...|-....|...-.....|+...|...+............+....|+....+.|...+|-.++.+.+... ..+.-
T Consensus 599 ~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl 677 (886)
T KOG4507|consen 599 INKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPL 677 (886)
T ss_pred hcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCch
Confidence 33333443344443333345679999999999887763222234567788888899999999999999998832 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
++..+++++....+.+.|++.++++.++.+. +.+.-+.|...-|
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 7888899999999999999999999998766 7777777655444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.16 E-value=15 Score=34.88 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
.-++|...|-++-..+.--+......|+. |....+.++|+.++-++++. +-.+|++++..|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44667777777665444444445555554 44467888888888888765 22567888888888888888888774
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.01 E-value=17 Score=36.75 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 001966 328 GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS---GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR 404 (989)
Q Consensus 328 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 404 (989)
|......+...++..--...+++.+...+-.+... -..|+... .+.++.+ -.-+.++++.++..=+.-|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33444444444444444455566666555555432 01111111 1122222 2234556666666666666667777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 405 TYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
+.+.+|+.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777766666666655544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.74 E-value=17 Score=40.27 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 335 AYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
.-+.+++.+-++|..++|+++- +|...- -....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 3445666666666666665431 121111 11233567777777665543 24455777777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 001966 415 RMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGK 494 (989)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 494 (989)
+.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. .|...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 77777777777766543 33455555666666555555555554442 1222334556667776666
Q ss_pred HHHH
Q 001966 495 LVER 498 (989)
Q Consensus 495 ~~~~ 498 (989)
++.+
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.69 E-value=36 Score=34.25 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 001966 230 SYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290 (989)
Q Consensus 230 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 290 (989)
+++...+.|..+|.+.+|.++.+..+.... .+...|-.++..|...||--.|..-+++|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555666677777777777777666432 455666666777777777666666666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.63 E-value=3.2 Score=27.66 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
.+++.++..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888877643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.59 E-value=45 Score=30.96 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=8.3
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 001966 409 LIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~ 428 (989)
++..+...|++-+|+.+.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33344444444444444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.84 E-value=13 Score=30.41 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
|..+...++..+...|++++|++.+-++++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555555555555555555555555555444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.71 E-value=62 Score=32.03 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHH
Q 001966 619 LINGLSKKLELREALGIFLELLEK---GL--VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK-----GVEPNTLTYNV 688 (989)
Q Consensus 619 li~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 688 (989)
+|....+.+++++....+.+++.- .+ .-.....+++++-.....+.+--.++|+.-++. +-.....|-+.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 444455555555555555444321 00 001223344444444444444444444333221 11222234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC----C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGV----P-------LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSF 755 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 755 (989)
|...|...+.+....+++.++.+.-. . .-...|..-|..|..+.+-.+-..+|++.+.... |.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 66677777777777777777654210 1 1123455556777777777777777777665433 444433
Q ss_pred HHHH----HHHHHcCCHHHHHHHHHHHH----HCCCCC--CHHHHHHHHHHHHhcC
Q 001966 756 NTLI----EFLCISNKLQEAHQLLDAML----EEQVNP--NHDTYTTLINQYCKVQ 801 (989)
Q Consensus 756 ~~l~----~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~g 801 (989)
..+- ..+.+.|++++|..-|-+.. +.|.+. ...-|..|++++.+.|
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3221 23456677777765444433 223211 1233555555555544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.65 E-value=13 Score=37.69 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++-.+|.+.++++.|++..+.++...|. ++.-+.-.+-.|.+.|.+..|..-++..++..|+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3446667777777777777777776655 6666666677777777777777777777766665
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.41 E-value=20 Score=36.32 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=60.5
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 001966 256 EKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG---LVPD--SYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLK 330 (989)
Q Consensus 256 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 330 (989)
..|..-.+.+-..++..--...+.+++..++-.++..- ..|+ .++|..++ -.=+..+++.++..=++-|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence 34555556666666666666777778877777765431 1122 22222222 222445666666666666777
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 331 LDTVAYYALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777666666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 989 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.0 bits (229), Expect = 3e-19
Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 4/226 (1%)
Query: 280 DEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339
A L++ + P L+ L + + L A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 340 IDGFVKQGDVEEAFRVKDEL---VASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIR 396
+ + A + + L +YN ++ G+ + G ++ VL +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 397 MGIEPNSRTYTSLIQGYCRM-RKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLR 455
G+ P+ +Y + +Q R + + L++M ++ L V++ L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 456 QINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRR 501
++ + P + + L+ + K+ KL ++
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 2e-18
Identities = 32/309 (10%), Positives = 92/309 (29%), Gaps = 11/309 (3%)
Query: 560 QTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVL 619
Q AG + + P + ++ + ++ + + + Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 620 INGLSKKLELREALGIFLEL---LEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCE 676
+L A + + +K + +D YN+++ + + + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 677 KGVEPNTLTYNVLIDGFCKAGDLTEPFQ-LFDEMTKRGVPLDGSVYNALLSGCCKEEKLE 735
G+ P+ L+Y + + + ++M++ G+ L LLS + L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795
++ + + + + ++ L L+ +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855
V ++EK E++ T+ + + L + +
Sbjct: 314 SRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW-------EKALCRALRETKNRLEREVYE 366
Query: 856 DNFTYYVMI 864
F+ Y +
Sbjct: 367 GRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.4 bits (212), Expect = 2e-17
Identities = 46/378 (12%), Positives = 116/378 (30%), Gaps = 21/378 (5%)
Query: 470 KPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARI 529
P L+ K L + + ++ + ++ A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 530 YLV---EMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVD 586
LV ++ + + A +LG+ G + + ++GL P+ + Y + +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 587 GYCKEGNIAEAISK-FRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLV 645
++ A I + M G+ + +VL++ + L+ + +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 646 PDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705
P + L+ +L+ + + ++ + + +P
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPL-KTLQCLFEKQLHMELASRVCVVSVEKPTLP 327
Query: 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCIS 765
E+ L E+ L +AL ++ LE+ + +L FLC+
Sbjct: 328 SKEVKHARKTLKTLRDQW-------EKALCRALRETKNRLEREVYEGRF--SLYPFLCLL 378
Query: 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ-----YCKVQNMEKAKQLFLEMQQRNLKP 820
++ + LL + + +++TTL + + + + ++ Q + +
Sbjct: 379 DEREVVRMLLQVLQ--ALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRK 436
Query: 821 ATITYRSLLNGYNRMGNR 838
S R
Sbjct: 437 YLCLLASDAEVPEPCLPR 454
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 5e-15
Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 4/184 (2%)
Query: 214 AKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRV---FSEMGEKGCRPNVATYNVVI 270
A + + + +K + YN V+
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 271 GGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFS-AAKRLGDVRLVLSELIGKGL 329
G R G E V + + + GL PD +Y + + G + L ++ +GL
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 330 KLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKARE 389
KL + L+ + ++ +VK V + LL+ +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 390 VLNE 393
+
Sbjct: 293 LHLP 296
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.8 bits (187), Expect = 2e-14
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 3/117 (2%)
Query: 765 SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL---EMQQRNLKPA 821
L + Q++ + A L + +Q+
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALK 878
Y +++ G+ R G E+ V + G+ PD +Y + ++ ++
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 1e-13
Identities = 23/218 (10%), Positives = 61/218 (27%), Gaps = 4/218 (1%)
Query: 401 PNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAI 460
P L+Q + + + L L + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 461 L---GEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIG 517
L + +Y ++ + ++ +E ++ ++ G+TPD+ + + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 518 LCKAKRMDEA-RIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP 576
+ + + L +M + GLK + A ++ + +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 577 NDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQ 614
V + ++ + + L E Q
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 1e-12
Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 1/162 (0%)
Query: 194 NALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSE 253
A + L ++ L + + + Y V+ + + +E V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 254 MGEKGCRPNVATYNVVIGGLCRVGFVDEAVE-LKNSMVEKGLVPDSYTYVNLIYGFSAAK 312
+ + G P++ +Y + + R +E M ++GL + L+ A
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354
L V V V L+ + +
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 1e-08
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 4/163 (2%)
Query: 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865
A L +Q P LL + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 866 AHCKEGNVMEALKLKDLIFD---KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922
+ A L + KR ++ + Y A++ ++ + E + +L + ++G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 923 FRLGFASCRTVANDFLREG-VMDYAAKVLECMASFGWVSNSIS 964
S R+ + LE M+ G ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 6e-08
Identities = 28/306 (9%), Positives = 72/306 (23%), Gaps = 57/306 (18%)
Query: 6 RASSHVLNARTRPMPTRRFSSQTQLTEQEATVRQITSILTQNDWQRLLTSSNVPKKLNPD 65
+ + + R + F S + + Q + P+ +
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEE 93
Query: 66 VIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKR 125
+ ++ + Q ++L+ A ++
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF-KCCLLTDQLPLAHHLLVV 152
Query: 126 MISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCE 185
L ++N ++ G+ + G E V +
Sbjct: 153 HHGQRQKRKLLTLD-----------------MYNAVMLGWARQGAFKELVYVL------- 188
Query: 186 FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKV-RNA 244
+ G D+ SY + + ++A
Sbjct: 189 -------------------------------FMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 245 EEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNL 304
+R +M ++G + V++ R + ++K + +P L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 305 IYGFSA 310
+ A
Sbjct: 278 LRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 2e-18
Identities = 105/669 (15%), Positives = 219/669 (32%), Gaps = 162/669 (24%)
Query: 299 YTYVNLIYGFSAA-KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEE-AFRVK 356
Y Y +++ F A D + V + ID + D R+
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 357 DELVASGNQIDLVIYNTLLK---GFCKSGKMEKAREVLNE---IIRMGIEPNSRTYTSLI 410
L++ ++ +L+ F M + + + RM IE R Y
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYND-N 123
Query: 411 QGYCRMRKM-VSAFELLDEMKK--KNLVPSVFTYGVIIDGLCHCGDLRQ---INAILGEM 464
Q K VS + ++++ L P+ V+IDG+ G + ++ L
Sbjct: 124 Q---VFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSG--KTWVALDVCLSYK 175
Query: 465 ITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRM 524
+ + I + NL ++E +++ L ++
Sbjct: 176 VQCKM-DFKIFWLNL-------KNCNSPETVLEMLQK----------------LLY--QI 209
Query: 525 DEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEML--NSGLVPNDVIYT 582
D + +K IHS +A + R N LV +V
Sbjct: 210 DPNWTSRSDHSSN-IKLRIHSIQAELR------------RLLKSKPYENCLLVLLNVQNA 256
Query: 583 SIVDGY---CK------EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREAL 633
+ + CK + + +S T + ++ S L E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLS------------AATTTHISLDHHSMTLTPDEVK 304
Query: 634 GIFLELLE---KGLVPDVDTYN----SLITSFCKICDVDKAFQLYEEM-CEKGVEPNTLT 685
+ L+ L+ + L +V T N S+I + D + ++ + C+K +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESS 362
Query: 686 YNVLIDGFCKAGDLTEPFQ---LFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFR 742
NVL + + + F +F +P + +L+ + + +
Sbjct: 363 LNVL-----EPAEYRKMFDRLSVFPPSAH--IPTI--LL-SLIWFDVIKSDVMVVVNKLH 412
Query: 743 D--MLEKGLA-STLSFNTL-IEFLCISNKLQEAHQ-LLDAMLEEQVNPNHDTYTTLINQY 797
++EK ST+S ++ +E H+ ++D + + D ++QY
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 798 ---------CKVQNMEKA---KQLFLE---MQQ--RNLKPATITYRSLLNGYNRMGNRSE 840
+++ E+ + +FL+ ++Q R+ A S+LN ++
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL----- 527
Query: 841 VFVVFEEMLGKGIEPDNFTYYVMIDA-----HCKEGNVMEALKLKDLI----FDKRMPIS 891
+ I ++ Y +++A E N++ + K DL+ + I
Sbjct: 528 ------KFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLLRIALMAEDEAIF 580
Query: 892 AEAYKAIIK 900
EA+K + +
Sbjct: 581 EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 93/625 (14%), Positives = 175/625 (28%), Gaps = 224/625 (35%)
Query: 10 HVLNARTRPMPTRR-FSSQTQLTEQEATVRQ-ITSILTQN-DW----------------- 49
H++ ++ T R F T L++QE V++ + +L N +
Sbjct: 53 HIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 50 ------QRLLTSS------NVP------------KKLNPD--VI--------RSVIHLN- 74
RL + NV +L P V+ ++ + L+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 75 -RAHNLTRLLSF-FHWSERQMGTCQNDLKVL----SLLFVVLCNC--------------- 113
++ + + F W + C + VL LL+ + N
Sbjct: 171 CLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 114 ------------KMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGL----- 156
K Y +V + + + +A + CK L
Sbjct: 229 SIQAELRRLLKSKPY-ENCLLVLLNVQNA-----KAWNAFN--------LSCKILLTTRF 274
Query: 157 --VFNMLIDGYRK--------IGL-LDEAVDLFLCDTGCE-------------FVPSLFS 192
V + L + L DE L L C S+ +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 193 CNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFS 252
+RD W W +N TT+I++ V E +++F
Sbjct: 335 --ESIRD------GLATWDNWKHVNCDK----------LTTIIESSLNVLEPAEYRKMFD 376
Query: 253 EMGEKGCRPNVATYNVVI--GGLCRV---GFVDEAVELKNSMVEKGLV---PDSYTYVNL 304
+ V + I L + + + + N + + LV P T
Sbjct: 377 RLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--- 426
Query: 305 IYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGN 364
+ + L L +KL+ YAL V ++ + F D +
Sbjct: 427 --------SIPSIYLELK------VKLENE--YALHRSIVDHYNIPKTFDSDDLIP---P 467
Query: 365 QIDLVIYNTL---LKGFCKSGKMEKAREVL-------NEIIRMGIEPNSRTY-TSLIQGY 413
+D Y+ + LK +M R V +I N+ + +Q
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 414 CRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNA 473
+ + + E ++ + + DL +I A+ + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLI-CSKYTDLLRI-AL--------MAEDE 577
Query: 474 IIYTNLVSTYFKKNKLQEAGKLVER 498
I+ +EA K V+R
Sbjct: 578 AIF-------------EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 8e-08
Identities = 52/333 (15%), Positives = 107/333 (32%), Gaps = 86/333 (25%)
Query: 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK 747
V D F D + + D + + L + ++ ++ + L LF +L K
Sbjct: 24 VFEDAFVDNFDCKD---VQDMP--KSI-LSKEEIDHIIM---SKDAVSGTLRLFWTLLSK 74
Query: 748 GLASTLSFNTLIEFLCISNKLQEAHQ-LLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKA 806
+ +F + L+ ++ L+ + EQ P+ T I Q ++ N
Sbjct: 75 QE------EMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYN---D 122
Query: 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG-------------- 852
Q+F + L+P ++LL R V+ + +LG G
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 853 -IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK----------RMPISAEAYKAIIKA 901
+ D +++ + V+E L+ D + + + +A ++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961
L K + Y L +L + + N F + + K+L +
Sbjct: 237 LLKSKPYENCLLVLLNVQNA----------KAWNAF------NLSCKIL-------LTTR 273
Query: 962 SISLADIVKG----------ENSGVDLDESKDL 984
+ D + + + DE K L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 41/357 (11%), Positives = 92/357 (25%), Gaps = 31/357 (8%)
Query: 573 GLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKLELR 630
L P V+ S G + + A G+ P+ V + G ++
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 631 EALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN-TLTYNV 688
L + + L P+ V S + V + + G+ P +
Sbjct: 124 RLLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVVAIAS 179
Query: 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKG 748
G + + + P + G E +++ L +
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 749 LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQNMEKAK 807
++ + +Q +L + P + ++ +++
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNSGGKQALETVQRLL 296
Query: 808 QLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA 866
+ + L P + S G + + V + G + P + A
Sbjct: 297 PVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQ------VVA 346
Query: 867 HCKEGNVMEAL-KLKDLIFDKRMPIS-----AEAYKAIIKALCKREEYSEALRLLNE 917
+AL ++ L+ A + E L +L +
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 58/409 (14%), Positives = 112/409 (27%), Gaps = 48/409 (11%)
Query: 280 DEAVELKNSMVEKGLVPDSY-TYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDT---VA 335
+ L P+ + G A + + L ++ + L VA
Sbjct: 62 GAPLNLT---------PEQVVAIASHDGGKQALETVQR----LLPVLCQAHGLTPQQVVA 108
Query: 336 YYALIDGFVKQGDVEEAFRV-KDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI 394
+ G V+ V + Q+ + G ++ VL +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVV--AIASHDGGKQALETVQALLPVLCQA 166
Query: 395 IRMGIEPN-SRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVP-SVFTYGVIIDGLCHCG 452
G+ P S G + + +L + L P V G
Sbjct: 167 H--GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALE 222
Query: 453 DLRQINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPD-VSC 510
++++ +L + GL P + + +Q ++ + G+TP V
Sbjct: 223 TVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVA 278
Query: 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN---IHSFRAFILGYCMAGEMQTAGRFFN 567
S G + + L + GL P + +Q
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQ--ALETVQRLLPVLC 334
Query: 568 EMLNSGLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSK 625
+ GL P V+ S G + + A G+ PE V + G
Sbjct: 335 QAH--GLTPQQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQA 390
Query: 626 KLELREALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVDKAFQLYEE 673
++ L + + L P+ V S + V + + +
Sbjct: 391 LETVQRLLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 42/354 (11%), Positives = 89/354 (25%), Gaps = 25/354 (7%)
Query: 573 GLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKLELR 630
GL P V+ S G + + A G+ PE V + G ++
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQ 157
Query: 631 EALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN-TLTYNV 688
L + + L P+ V S + V + + + + P +
Sbjct: 158 ALLPVLCQAHG--LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIAS 213
Query: 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKG 748
G + + + P + G E +++ L +
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Query: 749 LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQNMEKAK 807
++ + +Q +L + P + ++ +++
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLL 330
Query: 808 QLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMID 865
+ Q L P + S G + + V + G + P+
Sbjct: 331 PVL--CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGG 386
Query: 866 AHCKEGNVMEALK--LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917
V L + P A + E L +L +
Sbjct: 387 GKQALETVQRLLPVLCQAHGLT---PEQVVAIASHDGGKQALETVQRLLPVLCQ 437
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 56/425 (13%), Positives = 105/425 (24%), Gaps = 71/425 (16%)
Query: 262 NVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSY-TYVNLIYGFSAAKRLGDVRLV 320
V GG + V + + L P+ + G A + +
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQA---- 158
Query: 321 LSELIGKGLKL---DTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKG 377
L ++ + L VA + G V+ V + +V + G
Sbjct: 159 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIASNGGG 217
Query: 378 FCKSGKMEKAREVLNEIIRMGIEPN-SRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVP 436
+++ VL + + P S G + + +L +
Sbjct: 218 KQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQ-------- 267
Query: 437 SVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKL 495
A GL P + + +Q +
Sbjct: 268 ----------------------AH-------GLTPQQVVAIASNSGGKQALETVQRLLPV 298
Query: 496 VERMRREGITPD-VSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN---IHSFRAFIL 551
+ + G+TP V S G + + L + L P +
Sbjct: 299 LCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASHD--G 352
Query: 552 GYCMAGEMQTAGRFFNEMLNSGLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGIL 610
G +Q + GL P V+ S G + + A G+
Sbjct: 353 GKQALETVQRLLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLLPVLC--QAHGLT 408
Query: 611 PE-VQTYSVLINGLSKKLELREALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVDKAF 668
PE V + G ++ L + + L P V S + +
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGRPALESIVAQL 466
Query: 669 QLYEE 673
+
Sbjct: 467 SRPDP 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 56/438 (12%), Positives = 126/438 (28%), Gaps = 63/438 (14%)
Query: 470 KPNAIIYTNLVSTYFKKNKLQEA----GKLVERMRR----EGITPDVSCFNSLIIGLCKA 521
+ A + L K + + A K E +++ + + + +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 522 KRMDEARIYLVEMLR---------RGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS 572
R+ + +IY+ ++ R P + + C + + A F + L
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE- 166
Query: 573 GLVPNDVIYTS----IVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKL 627
P + +TS AI R + + P+ +L L K
Sbjct: 167 -KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYLKVLLALKLHKMR 223
Query: 628 ELREALGIFLELLEKGL--VPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN-T 683
E E G +L+E+ L P D S + + + DKA +L ++ E PN
Sbjct: 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNA 281
Query: 684 LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRD 743
+ + G C + + N + E + A+ +
Sbjct: 282 YLHCQI--GCC--------------YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325
Query: 744 MLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803
E + L ++++ +EA + L +Y
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGN---- 379
Query: 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE--PDNFTYY 861
F Q + A + + + + ++ +++ + +
Sbjct: 380 ------FQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433
Query: 862 VMI-DAHCKEGNVMEALK 878
++ + +A +
Sbjct: 434 HVLAFLQELNEKMQQADE 451
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 65/495 (13%), Positives = 134/495 (27%), Gaps = 78/495 (15%)
Query: 469 LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEAR 528
+ N L Y A L+ + + +C L K A
Sbjct: 113 ITGNPNDAFWLAQVYCCTGDYARAKCLL--TKEDLYNRSSACRYLAAFCLVKLYDWQGAL 170
Query: 529 I-------------YLVEMLRRGLKPNIHSFRAFILG--YCMAGEMQTAGRFFNEMLNSG 573
++L + + + ++ G Y A + E L
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-- 228
Query: 574 LVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632
+ + +V + + E + + + L K +
Sbjct: 229 VDAKCYEAFDQLVSNHLLTAD-EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287
Query: 633 LGIFLELLE--KGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTL-TYNVL 689
L + L GL D + + ++ E +P L Y +
Sbjct: 288 LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLH 345
Query: 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC--KEEKLEQALELFRDMLEK 747
+ ++G+ + + + +++ R P + A+ G K+ +A F K
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV--GIYYLCVNKISEARRYFS----K 398
Query: 748 GLASTL--SF--------NTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQ 796
+ST+ F ++ + +A ++ H Y L Q
Sbjct: 399 --SSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAA--RLFQGTHLPYLFLGMQ 450
Query: 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG----YNRMGNRSEVFVVFEEML--- 849
+ ++ N+ A + L LLN + F+ L
Sbjct: 451 HMQLGNILLANEYL--QSSYALFQ---YDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 850 --GKGIEPDNF-TYYVMIDAHCKEGNVMEAL----KLKDLIFDKRMPISAEAYKAIIKAL 902
+ E T+ + A+ K A+ + L A + AI
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVHTAIALVY 560
Query: 903 CKREEYSEALRLLNE 917
++ A+ L+E
Sbjct: 561 LHKKIPGLAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 50/374 (13%), Positives = 117/374 (31%), Gaps = 53/374 (14%)
Query: 327 KGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEK 386
G+KL+ Y + + + A E + + ++ L+ + E
Sbjct: 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-DAKCYEAFDQLVSNHLLTADEEW 252
Query: 387 AREV---LNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELL-DEMKKKNLVPSVFTYG 442
+ + + Y + ++ A + L + +
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312
Query: 443 VIIDGLCHCGDLRQINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEA----GKLVE 497
L + AI +++ + P +Y +++ + + + LV+
Sbjct: 313 DT---LFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 498 RMRREGITPD--VSCFNSLIIGLC--KAKRMDEARIYLVEMLRRGLKPNIHSFRAFI-LG 552
P+ V+ +G+ ++ EAR Y + + P A+I
Sbjct: 368 ------RHPEKAVTWLA---VGIYYLCVNKISEARRYFSKSST--MDPQFGP--AWIGFA 414
Query: 553 --YCMAGEMQTAGRFFNEMLNSGLVPNDVI-YTSIVDGYCKEGNIAEAISKFRCMLARGI 609
+ + GE A + L + Y + + + GNI A + + +
Sbjct: 415 HSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQ--SSYAL 470
Query: 610 LPEVQTYSVLING----LSKKLELREALGIF---LELLEKGLVPD---VDTYNSLITSFC 659
+L+N K +++ A+ F L L++K + T+ +L ++
Sbjct: 471 FQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527
Query: 660 KICDVDKAFQLYEE 673
K+ D A +
Sbjct: 528 KLKMYDAAIDALNQ 541
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 62/465 (13%), Positives = 133/465 (28%), Gaps = 93/465 (20%)
Query: 469 LKPN-----AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKR 523
L P+ A+ N + +F EA + + I
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEA---------------IKYYQYAI-------- 52
Query: 524 MDEARIYLVEMLRRGLKPN---IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDV- 579
L PN +S + Y G+++ F + L + P+
Sbjct: 53 --------------ELDPNEPVFYSNISAC--YISTGDLEKVIEFTTKALE--IKPDHSK 94
Query: 580 IYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLEL 639
GN +A+ + + S I + ++ ++A+ + E
Sbjct: 95 ALLRRASANESLGNFTDAMFDLS---VLSLNGDFDGAS--IEPMLERNLNKQAMKVLNEN 149
Query: 640 LEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDL 699
L K + F +++ E + Y+ A L
Sbjct: 150 LSK-------DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--L 200
Query: 700 TEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759
+ DE + + + + L + L+
Sbjct: 201 QRLYSATDEGYLVA---NDLLTKST-------DMYHSLLSANTVDDPLRENAALALCYTG 250
Query: 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLF---LEMQQR 816
F + N L +A LL + ++P ++Y L +N ++ + F +++
Sbjct: 251 IFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 817 NLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVME 875
TY Y + + F++ + P+N + Y + K+G E
Sbjct: 309 YPP----TYYHRGQMYFILQDYKNAKEDFQKAQ--SLNPENVYPYIQLACLLYKQGKFTE 362
Query: 876 ALKLKDLIFDK---RMPISAEAYKAIIKALCKREEYSEALRLLNE 917
+ F++ + P E + L R ++ A++ +
Sbjct: 363 SEAF----FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 69/480 (14%), Positives = 125/480 (26%), Gaps = 77/480 (16%)
Query: 469 LKPN-AIIYTNLVSTYFKKNKLQEA----GKLVERMRREGITPD-VSCFNSLIIGLCKAK 522
L PN + Y+N+ + Y L++ K +E I PD
Sbjct: 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLG 107
Query: 523 RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYT 582
+A L + L + A I + A + NE L+
Sbjct: 108 NFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSK-------DEG 155
Query: 583 SIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL------------- 629
++A F L + Y LS L+
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
Query: 630 ---REALGIFLELLEK-----GLVPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVE 680
++ ++ LL L + ++ A L +E +
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LH 273
Query: 681 PNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740
P +Y L + E F+ F + P Y + + A E
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCK 799
F+ + + L L K E+ + P + T
Sbjct: 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTD 390
Query: 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFT 859
+ + A + + ++ I + +G ++GK
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKI--------HVGIGP----------LIGKATIL--AR 430
Query: 860 YYVMIDAHCKEGNVMEALKL--KDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917
E A+KL K D P S +A + + + E+ EA+ L +
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELD---PRSEQAKIGLAQLKLQMEKIDEAIELFED 487
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 73/490 (14%), Positives = 136/490 (27%), Gaps = 67/490 (13%)
Query: 469 LKPNAIIYTNLVSTYFKKNKLQEA----GKLVERMRREGITPD-VSCFNSLIIGLCKAKR 523
LK + + Y+NL + Y L++ K +E + PD +
Sbjct: 35 LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE------LKPDYSKVLLRRASANEGLGK 88
Query: 524 MDEAR--------------IYLVEMLRRGL-KPNIHSFRAFILGYCMAGEMQTAGRFFNE 568
+A + ML R L K + + A T
Sbjct: 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148
Query: 569 MLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLE 628
N TS+ + + + + S L + +
Sbjct: 149 KERKDKQENLPSVTSMAS-FFGIFKPELTFANYD-ESNEADKELMNGLSNLYKRSPESYD 206
Query: 629 LR-----EALGIFLELLEK-----GLVPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEK 677
+A +F E L+K L + D A + ++ E
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE- 265
Query: 678 GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--KLE 735
+ P +Y + D TE + FD+ K + SVY G +
Sbjct: 266 -LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHR--GQMNFILQNYD 321
Query: 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DTYTTLI 794
QA + F E + + L NK + L P +
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFA 379
Query: 795 NQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVV--FEE---ML 849
+ +KA + + + K I Y + + + V F E +L
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 850 GKGIE--PDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRM---PISAEAYKAIIKALC 903
K + P + + ++ ++ EA+ L F++ E +AI
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL----FEESADLARTMEEKLQAI--TFA 492
Query: 904 KREEYSEALR 913
+ + + +R
Sbjct: 493 EAAKVQQRIR 502
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 732 EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYT 791
E+ L+ + + +S F + N AH+ + +E + P ++Y
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--LFPRVNSYI 274
Query: 792 TLINQYCKVQNMEKAKQLF---LEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848
+ + + F L++ N Y + N + F++
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSS----VYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 849 LGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKAIIKALCK 904
++P+N F Y + +E + L F + + P + E + L
Sbjct: 331 KE--LDPENIFPYIQLACLAYRENKFDDCETL----FSEAKRKFPEAPEVPNFFAEILTD 384
Query: 905 REEYSEALRLLNEM 918
+ ++ +AL+ +
Sbjct: 385 KNDFDKALKQYDLA 398
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 24/201 (11%), Positives = 66/201 (32%), Gaps = 8/201 (3%)
Query: 588 YCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPD 647
+++ ++R + T+ ++ + + L L +G
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLM---AASIYFYDQNPDAALRTLHQGD--S 129
Query: 648 VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVE-PNTLTYNVLIDGFCKAGDLTEPFQLF 706
++ + K+ +D A + ++M ++ + T + L + + +F
Sbjct: 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189
Query: 707 DEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN 766
EM + + N + + + E A + ++ L+K + L+
Sbjct: 190 QEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248
Query: 767 KLQEAHQLLDAMLEEQVNPNH 787
K E + L + + +H
Sbjct: 249 KPPEVTNRYLSQL-KDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 20/266 (7%)
Query: 382 GKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTY 441
G ++ + E + L + Y RK + + K + P +
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEI----KPSSAPELQAV 68
Query: 442 GVIIDGLCHCGDLRQINAILGEMITRGLKP-NAIIYTNLVSTYFKKNKLQEAGKLVERMR 500
+ + L I A L ++R + N S YF A + + +
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD 128
Query: 501 REGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN---IHSFRAFILGYCMAG 557
+ C + L K R+D AR L +M + A++
Sbjct: 129 ------SLECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGE 180
Query: 558 EMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPE-VQTY 616
++Q A F EM + P ++ + +G A + L + +T
Sbjct: 181 KLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETL 237
Query: 617 SVLINGLSKKLELREALGIFLELLEK 642
L+ + E +L L+
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 30/206 (14%), Positives = 67/206 (32%), Gaps = 13/206 (6%)
Query: 611 PEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLI-TSFCKICDVDKAFQ 669
PE+Q + L+ + + + + T+ + + + + D A +
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC 729
+ +E +T +L+ K L + +M + A
Sbjct: 123 TLHQGDS--LECMAMTVQILL----KLDRLDLARKELKKMQDQD-EDATLTQLATAWVSL 175
Query: 730 K--EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH 787
EKL+ A +F++M +K + L N + + A +L L+ + H
Sbjct: 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGH 233
Query: 788 -DTYTTLINQYCKVQNMEKAKQLFLE 812
+T L+ + + +L
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLS 259
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 92/677 (13%), Positives = 182/677 (26%), Gaps = 101/677 (14%)
Query: 262 NVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSY-TYVNLIYGFSAAKRLGDVRLV 320
V IGG + V + + L PD + G A + + + V
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASHGGGKQALETVQRLLPV 316
Query: 321 LSELIGKGLKLD-TVAYYALIDGFVKQGDVEEAFRVKDELVA-SGNQIDLVIYNTLLKGF 378
L + G L D VA + G V+ V + + +Q+ + G
Sbjct: 317 LCQAHG--LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV--AIASNGGGK 372
Query: 379 CKSGKMEKAREVLNEIIRMGIEPN-SRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPS 437
+++ VL + G+ P+ S A E +
Sbjct: 373 QALETVQRLLPVLCQAH--GLTPDQVVAIAS--------NGGKQALETVQR--------- 413
Query: 438 VFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKLV 496
L Q A GL P+ + + +Q L
Sbjct: 414 ------------LLPVLCQ--AH-------GLTPDQVVAIASHDGGKQALETVQRL--LP 450
Query: 497 ERMRREGITPD-VSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFI---LG 552
+ G+TP V S G + + + + +L + A G
Sbjct: 451 VLCQTHGLTPAQVVAIASHDGGKQALETVQQL----LPVLCQAHGLTPDQVVAIASNIGG 506
Query: 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCML-----AR 607
+Q + GL P+ V G +A+ + +L A
Sbjct: 507 KQALATVQRLLPVLCQAH--GLTPDQ------VVAIASNGGGKQALETVQRLLPVLCQAH 558
Query: 608 GILPE-VQTYSVLINGLSKKLELREALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVD 665
G+ P+ V + G ++ L + + L V S I + V
Sbjct: 559 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQVQVVAIASNIGGKQALETVQ 616
Query: 666 KAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725
+ + + + G + + + P +
Sbjct: 617 RLLPVLCQAHGLTPA-QVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPDQVVAIASNG 674
Query: 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785
G E +++ L + ++ + +Q +L
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHG----L 730
Query: 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQ-RNLKPA-TITYRSLLNGYNRMGNRSEVFV 843
D + + Q +E ++L + Q L PA + S + G + +
Sbjct: 731 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLP 790
Query: 844 VFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI---IK 900
V + G+ + A +AL+ + +P+ +A+ +
Sbjct: 791 VLCQDH--GLTLAQ------VVAIASNIGGKQALET----VQRLLPVLCQAHGLTQDQVV 838
Query: 901 ALCKREEYSEALRLLNE 917
A+ +AL +
Sbjct: 839 AIASNIGGKQALETVQR 855
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 24/180 (13%)
Query: 765 SNKLQEAHQLL---DAMLE---EQVNPNHD----TYTTLINQYCKVQNMEKAKQLFLE-- 812
+ K+ EAH+ + + L+ + P++D Y + + +E+AK +L+
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 813 ---MQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMID 865
R+L A + + E E+ +E
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 866 AHCKEGNVMEALK-----LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920
+ ++ +A+ ++R+ +AE + L +++++ EA L +
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 5e-05
Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 468 GLKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPD-VSCFNSLIIGLCKAKRMD 525
G P A NL + ++ ++EA +L + + P+ + ++L L + ++
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQ 60
Query: 526 EARIYLVEMLRRGLKPNIHSFRAFILGYCM--AGEMQTAGRFFNEMLNSGLVPNDVI-YT 582
EA ++ E +R + P + +G + ++Q A + + + + P ++
Sbjct: 61 EALMHYKEAIR--ISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHS 115
Query: 583 SIVDGYCKEGNIAEAISKFRCMLA 606
++ + GNI EAI+ +R L
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALK 139
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 39/244 (15%)
Query: 473 AIIYTNLVSTYFKKNKLQEAGKLVER---MRRE--GIT-PDV-SCFNSLIIGLCKAKRMD 525
A + L Y +NK ++A L+ +R + G P V + N+L + K +
Sbjct: 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128
Query: 526 EARIYLV---EMLRRGLKPNIHSFRAFILG-----YCMAGEMQTAGRFFN---EMLNSGL 574
EA E+ + L + H A L G+ + ++ E+ + L
Sbjct: 129 EAEPLCKRALEIREKVLGKD-HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187
Query: 575 VPND----VIYTSIVDGYCKEGNIAEAISKFRCMLARG---IL----PEV-QTYSVLING 622
P+D ++ Y K+G +A + ++ +L R E +
Sbjct: 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247
Query: 623 LSKKLELREALGIF-LELLEKGLVPD----VDTYNSLITSFCKICDVDKAFQLYE---EM 674
K + ++ K D T +L + + + A L E
Sbjct: 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
Query: 675 CEKG 678
++G
Sbjct: 308 RKQG 311
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 45/319 (14%), Positives = 94/319 (29%), Gaps = 51/319 (15%)
Query: 663 DVDKAFQLYEEMCEK----GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDG 718
+ D+A +L + E+ + +VL + G+LT L + +
Sbjct: 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D 87
Query: 719 SVYNALLSGCC------KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCIS------- 765
+ AL S + L+ A E + L + EFL
Sbjct: 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147
Query: 766 -NKLQEAHQLLDAMLEEQVNPNHD----TYTTLINQYCKVQNMEKAKQLFLE----MQQR 816
+L EA + +E + LI +++ A+ +
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 817 NLKPATITYRSLLNG--YNRMGNRSEVFVVFEEMLGKGIEPDN-------FTYYVMIDAH 867
I+ + + + G+++ L +P+ + + A
Sbjct: 208 KYHSDWISNANKVRVIYWQMTGDKAAA----ANWLRHTAKPEFANNHFLQGQWRNIARAQ 263
Query: 868 CKEGNVMEALKLKDLIFD-----KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922
G A + + + + + M + + + S+A R+L + +
Sbjct: 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323
Query: 923 FRLGFASCRTVANDFLREG 941
R GF F+ EG
Sbjct: 324 NRTGFI--SH----FVIEG 336
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 71/380 (18%), Positives = 140/380 (36%), Gaps = 39/380 (10%)
Query: 553 YCMAGEMQTAGRFFNEMLNSGLVPNDV-IYTSIVDGYCKEGNIAEAISKFRCMLARGILP 611
AG+ + A R ++ P++ + + + + + + LA P
Sbjct: 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNP 64
Query: 612 E-VQTYSVLINGLSKKLELREALGIFLELLEKGLVPD-VDTYNSLITSFCKICDVDKAFQ 669
+ YS L N ++ +L+EA+ + L L PD +D Y +L + D++ A Q
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 670 LYEEMCEKGVEPN-TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGC 728
Y + P+ + L + G L E + + + P ++ L GC
Sbjct: 123 AYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNL--GC 177
Query: 729 CKEE--KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN 786
++ A+ F + ++ L L + A L ++PN
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235
Query: 787 H-DTYTTLINQYCKVQNMEKAKQLF---LEMQQRNLKPA-TITYRSLLNGYNRMGNRSEV 841
H + L Y + ++ A + +E L+P Y +L N G+ +E
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHFPDAYCNLANALKEKGSVAEA 290
Query: 842 FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKA 897
+ L + P + + + + ++GN+ EA++L + K P A A+
Sbjct: 291 EDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRL----YRKALEVFPEFAAAHSN 344
Query: 898 IIKALCKREEYSEALRLLNE 917
+ L ++ + EAL E
Sbjct: 345 LASVLQQQGKLQEALMHYKE 364
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 75/347 (21%), Positives = 137/347 (39%), Gaps = 33/347 (9%)
Query: 469 LKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPD-VSCFNSLIIGLCKAKRMDE 526
P A Y+NL + Y ++ +LQEA + R + PD + + +L L A M+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEG 119
Query: 527 ARIYLVEMLRRGLKPNIHSFRAFILG--YCMAGEMQTAGRFFNEMLNSGLVPNDV-IYTS 583
A V L+ P+++ R LG G ++ A + + + PN +++
Sbjct: 120 AVQAYVSALQ--YNPDLYCVR-SDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSN 174
Query: 584 IVDGYCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKLELREALGIFLELLEK 642
+ + +G I AI F + + P + Y L N L + A+ +L L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS- 231
Query: 643 GLVPD-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVE--PN-TLTYNVLIDGFCKAGD 698
L P+ + +L + + +D A + + +E P+ Y L + + G
Sbjct: 232 -LSPNHAVVHGNLACVYYEQGLIDLA----IDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 699 LTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--KLEQALELFRDMLEKGLASTLSFN 756
+ E ++ + P N L K E +E+A+ L+R LE + +
Sbjct: 287 VAEAEDCYNTALRLC-PTHADSLNNL--ANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 757 TLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQN 802
L L KLQEA + ++P D Y+ + N ++Q+
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 43/247 (17%)
Query: 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLING 622
G+ +EML + G +A+S FR +
Sbjct: 1 GQSVDEMLQKVSA------------AIEAGQNGQAVSYFRQTI----------------- 31
Query: 623 LSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN 682
L + + ++K L ++ K + DKA+ Y+E+ +K PN
Sbjct: 32 ---ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APN 86
Query: 683 -TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC---KEEKLEQAL 738
+ G + ++++++ + + + L G E+ ++ L
Sbjct: 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFL--GNYYYLTAEQEKKKL 143
Query: 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798
E L + + + ++A L ++ P+ + TL
Sbjct: 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKILR 201
Query: 799 KVQNMEK 805
+ + +
Sbjct: 202 IEKEVNR 208
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 989 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.18 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.13 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.13 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.11 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.82 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.82 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.55 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.53 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.37 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.96 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.46 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.38 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.03 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.87 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.56 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.45 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.23 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.98 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.91 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.69 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.6 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.85 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.78 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.53 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.38 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.09 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.88 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.94 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.76 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.27 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=384.69 Aligned_cols=503 Identities=11% Similarity=0.018 Sum_probs=305.6
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 305 (989)
+++..|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|++.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56667777777777777777777777777643 356666677777777777777777777766432 45666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
.+|++.|++++|.++|+++.... . ...++.+.++ ...|.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----K-----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----c-----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666421111 0 0000001110 01234456777788888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAF--EL-LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILG 462 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (989)
+|.++|++|.+.+ +.+..++..+...+...+..+.+. .+ +..+...+..+...+|+.++..|++.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 8888888877664 234445555544433322222111 11 3444444444445556666677777777777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 463 EMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN 542 (989)
Q Consensus 463 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (989)
++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 76654 466777777777777777777777777777665432 55667777777777777777777777776543 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLING 622 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 622 (989)
..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 6666667777777777777777777666543 3345566666667777777777777776666542 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 001966 623 LSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK----GVEPN--TLTYNVLIDGFCKA 696 (989)
Q Consensus 623 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~ 696 (989)
|.+.|++++|.++|+++.+.... +..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 66666666666666666654332 5556666666666666666666666666544 44454 45566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEF 761 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 761 (989)
|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++++..|.+..++..+..+
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 66666666666655543 44556666666666666666666666666666555555555554443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=381.79 Aligned_cols=521 Identities=10% Similarity=0.026 Sum_probs=272.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHH
Q 001966 379 CKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQIN 458 (989)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (989)
.+.|....+...+..+. .++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34444444444444332 245556666666666666666666666666542 345555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 459 AILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 538 (989)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++. |+.. ...++.+.++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccc
Confidence 666655432 3455555566666666666666665555321 1100 0000000000 0112
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 539 LKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSV 618 (989)
Q Consensus 539 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 618 (989)
.+++..+|..++.+|.+.|++++|.+.|+++.+.+ +. +...+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-----------------------------------~~~~~~~ 239 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AK-----------------------------------CYEAFDQ 239 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------------------CHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ch-----------------------------------hhHHHHH
Confidence 22233344444444444444444444444443322 11 2223333
Q ss_pred HHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 619 LINGLSKKLELREAL--GI-FLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK 695 (989)
Q Consensus 619 li~~~~~~g~~~~A~--~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 695 (989)
++..+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 332222221111111 01 233333333334444555555555666666666666655543 3456666666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLL 775 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 775 (989)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+..+.+..++..++.+|.+.|++++|.++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666665543 3355556666666666666666666666666555555666666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 776 DAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 776 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++ ..|
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 472 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQ 472 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 6665432 2245566666666666666666666666666532 33555666666666666666666666666666 444
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 856 D-NFTYYVMIDAHCKEGNVMEALKLKDLIFDK----RMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 856 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
+ ..+|..++.++.+.|++++|+++++++.+. +..|+ ..+|..++.+|.+.|++++|++.++++++.+|+ ++.
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChH
Confidence 3 335666666666666666666666666654 33444 566666666666666666666666666666655 666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhh
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 973 (989)
+|..++.+|...|++++|.+.++++++. .|+ ...+..++..|.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 6666666666666666666666666553 553 445555555543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=269.75 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=280.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 001966 585 VDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664 (989)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 664 (989)
...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...+...++..+ .+..+|..+...+...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 344556666677766666666542 33455555666666677777777777766666532 3566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
++|+..|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777652 2245567777777778888888888887777653 445666777777777788888888888888
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 824 (989)
++..|.+..++..++..+...|++++|...|+++++.. +.+...+..++..+...|++++|+..|++..+.. +.+..+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 88777777788888888888888888888888887653 2256677778888888888888888888877732 334667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+..++.++...|++++|...|+++++ +.|+.. ++..++.++.+.|++++|++.++++++..+. +..++..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHH
Confidence 88888888888888888888888888 667544 7777888888888888888888888877644 7788888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCC
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGV 976 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 976 (989)
+.|++++|+..++++++..|+ +..++..++.+|.+.|++++|.+.++++++. .|+ ...+..++..+...|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 888888888888888887766 7778888888888888888888888888753 675 667777777665544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=268.85 Aligned_cols=382 Identities=14% Similarity=0.068 Sum_probs=309.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL 629 (989)
Q Consensus 550 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 629 (989)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+. .+.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666543 334455566666677777777777777776664 344667777777777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM 709 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 709 (989)
++|+..|+++++..+. +...|..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888777765332 45667788888888888888888888887763 224556777788888889999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 710 TKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 710 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
.+.. |.+..+|..+...+...|++++|+..|+++++.+|.+..++..++..+...|++++|...+++.+... +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8763 56788899999999999999999999999999988888889999999999999999999999988753 225788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 868 (989)
+..++..|...|++++|++.|+++.+.+ +.+..+|..++..+.+.|++++|...|+++++ ..|+. .++..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHH
Confidence 8899999999999999999999999843 33467899999999999999999999999998 66754 48888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
..|++++|++.++++++..+. +..++..++.++.+.|++++|+..++++++..|+ ++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 999999999999999987654 7889999999999999999999999999999887 89999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=280.26 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=119.3
Q ss_pred HHHHHHHhhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 001966 248 KRVFSEMGEKGCRPN-VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR---------LGDV 317 (989)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~a 317 (989)
..+..++.+++..+. ...++.+|++||+.|++++|+++|++|.+.|+.||.+||+++|.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 334444444444332 234555666666666666666666666666666666666666666655443 4556
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001966 318 RLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRM 397 (989)
Q Consensus 318 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 397 (989)
.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHh
Q 001966 398 GIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCH 450 (989)
Q Consensus 398 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 450 (989)
|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=278.52 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC---------hhHHHHHHHHHHHCCCCCCH
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGF---------VDEAVELKNSMVEKGLVPDS 298 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~ 298 (989)
...++.+|++||+.|++++|+++|++|.+.|+.||.++||++|.+|++.|. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987665 67899999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 299 YTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGF 378 (989)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 378 (989)
+||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 001966 379 CKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRM 416 (989)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 416 (989)
++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-21 Score=222.99 Aligned_cols=823 Identities=12% Similarity=0.096 Sum_probs=487.2
Q ss_pred CChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccc--ccc
Q 001966 77 HNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEF--VCK 154 (989)
Q Consensus 77 ~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 154 (989)
..|.-.|.||.-+..... . |..--.-+++.....|+ ..++.+.+.......++=+..++..+...-.. -..
T Consensus 409 gq~~pll~YF~~ll~~g~--L-n~~eSlEl~r~vl~q~r----~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~ 481 (1630)
T 1xi4_A 409 GQTSPLLQYFGILLDQGQ--L-NKYESLELCRPVLQQGR----KQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLR 481 (1630)
T ss_pred CCCCHHHHHHHHHHhcCC--C-cHHHHHHHHHHHHHhch----HHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHh
Confidence 345667777777665543 2 44444555555555555 35666666645555555444444332110000 001
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
..+....+.++++.|++++++..-++. |+.|| |..|+..+.+.+ .+.|.++-..+.+ ..+ .....+.+
T Consensus 482 a~~~~Kvi~~l~~~gq~~ki~~Y~~~~---~~~pD---y~~ll~~~~~~~-P~~~~~fa~~L~~----~~~-p~~d~~~i 549 (1630)
T 1xi4_A 482 ANVPNKVIQCFAETGQVQKIVLYAKKV---GYTPD---WIFLLRNVMRIS-PDQGQQFAQMLVQ----DEE-PLADITQI 549 (1630)
T ss_pred cCCcHHHHHHHHHhCCHHHHHHHHhcc---CCCcc---HHHHHHHHhhcC-hHHHHHHHHHHhc----CCC-CccCHHHH
Confidence 124457888999999999999886654 67776 557777777654 7777776666665 322 45557889
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhh-----------------------------HHHHHHHHHccCChhHHHHH
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVAT-----------------------------YNVVIGGLCRVGFVDEAVEL 285 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------------------------~~~li~~~~~~g~~~~A~~~ 285 (989)
+..+...+..+++..++-+..+.+-+-+... +..+...+-+.|-++.|++.
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~ 629 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEH 629 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHh
Confidence 9999999999999999999887643212222 33333444455666666665
Q ss_pred HHHHHHCC--CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 286 KNSMVEKG--LV-PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 286 ~~~m~~~g--~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
|..+.... +. .....=.-++.-+ ..=..+.+.+++++|...++.-|......+..-|...=-.+.-.++|++....
T Consensus 630 y~d~~dikR~~~~~~~~~~~~l~~~f-g~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 630 FTDLYDIKRAVVHTHLLNPEWLVNYF-GSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred cCCHHHHHHHhhccCcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 55443210 00 0000011122222 22344556666666665554444444444444444444444555555543321
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HHCCCCCChhh---------H----
Q 001966 363 -----------GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI------------IRMGIEPNSRT---------Y---- 406 (989)
Q Consensus 363 -----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~g~~~~~~~---------~---- 406 (989)
...-|..+....|.+.++.|++.|.+++.++- ++.. -||..- +
T Consensus 709 egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l 787 (1630)
T 1xi4_A 709 EGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDL 787 (1630)
T ss_pred hhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHH
Confidence 11224445555566666666666666654431 0111 011100 0
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHH-------------HhcCCHHHHHHHHHHH
Q 001966 407 ---------TSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGL-------------CHCGDLRQINAILGEM 464 (989)
Q Consensus 407 ---------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~~ 464 (989)
...|..|...-++..+-.+...+.+.+.. ...-..|+... -+.+++.--...++.-
T Consensus 788 ~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~--e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~ 865 (1630)
T 1xi4_A 788 VLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCS--EDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEAR 865 (1630)
T ss_pred HHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCC--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122211222222222222221111 11112222221 1222222222334444
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHHHH-H--------HHHHH-HHHCCCCCCHhHH------HHHHHHHHhcCCHHH-H
Q 001966 465 ITRGLKPNAIIYTNLVSTYFKKNKLQEA-G--------KLVER-MRREGITPDVSCF------NSLIIGLCKAKRMDE-A 527 (989)
Q Consensus 465 ~~~~~~~~~~~~~~li~~~~~~g~~~~A-~--------~~~~~-~~~~g~~~~~~~~------~~li~~~~~~g~~~~-A 527 (989)
+..| ..++.++|+|...|...++-.+. + .+..+ ..++++..-..+| .-||...-+.+-++. |
T Consensus 866 ~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~a 944 (1630)
T 1xi4_A 866 IHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLS 944 (1630)
T ss_pred HhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHH
Confidence 4444 45777888888888765432221 0 00001 1111100000000 112222222222111 1
Q ss_pred H-----------------------HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHh
Q 001966 528 R-----------------------IYLVEMLRRGL--KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGL--VPNDVI 580 (989)
Q Consensus 528 ~-----------------------~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 580 (989)
+ ++.++-+...+ ..++.-....+..|...|.+.+|++++++..-.+- ..+...
T Consensus 945 rylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 945 RYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 1 11111111100 11233344556677788888888888888773321 123455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 581 YTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.+.++.+..+. +..+..+...+.... + ..-+...+...|.+++|..+|++... .....+.++ -.
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~ 1088 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EH 1088 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HH
Confidence 56666666666 445555555444321 1 33366778889999999999988521 222223332 26
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
.+++++|.++.++. .+..+|..+..++...|++++|+..|.+. .|...|..++..+.+.|++++|++.
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 78899999988855 25788899999999999999999999664 3778888999999999999999999
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
|....+... +......++.+|++.+++++...+. . .++...|..++..|...|++++|..+|...
T Consensus 1157 L~mArk~~~-e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1157 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHHhhcc-cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 998887663 3333345889999999988644332 2 346677778999999999999999999985
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
..|..++.++.+.|++++|++.++++. +..+|..+..+|...|++..|......+ ..+++.+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence 379999999999999999999999873 4578999999999999999999877643 347778889999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcc------cchhHHHHHhhh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE--GVMDYAAKVLECMASFGWVS------NSISLADIVKGE 972 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~ 972 (989)
.|.+.|.+++|+.++++++..++. +...|..|+..|.+. ++..++.+.|..-. .+.| +...|..+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988855 777887777766654 67778888887553 3344 356788888999
Q ss_pred hcCCChhhHH
Q 001966 973 NSGVDLDESK 982 (989)
Q Consensus 973 ~~~g~~~~a~ 982 (989)
.+.|++++|.
T Consensus 1366 ~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1366 DKYEEYDNAI 1375 (1630)
T ss_pred HhcccHHHHH
Confidence 9999999988
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-21 Score=224.54 Aligned_cols=405 Identities=12% Similarity=0.048 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 001966 512 NSLIIGLCKAKRMDEARIYLVEMLRRGL--KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYC 589 (989)
Q Consensus 512 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (989)
...+.+|...|.+.+|++++++.+-.+. .-+...-+.++.+..+. +.....++.+.+... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4566777788888888888888874321 12234444466555555 455555555554421 1333667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 590 KEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
..|.+++|..+|++... .....+.++. ..+++++|.++..+.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 78888888888877521 2222333332 5677888888777542 46677788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
.|.+. .|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|.+.+++++...+ +. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--~ 1192 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--G 1192 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh--C
Confidence 88553 366777778888888888888888888777653 3333334577778888777743322 21 2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLL 829 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 829 (989)
++...+..++..|...|++++|..+|.++ ..|..++.+|++.|++++|++.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 34456667888888888888888888774 36778888888888888888888765 3457788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCC
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK--REE 907 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 907 (989)
.+|...|++..|......++ .+...+..++..|.+.|.+++|+.+++..+..+. -+...|..++..|.+ -++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHHHHHHHHHHHhCCHHH
Confidence 88888888888877665432 2344555777778888888888888888877653 366667666655554 457
Q ss_pred HHHHHHHHHHHHHCCC-----ccCHHhHHHHHHHHHhcCChhHHHHH-------------HHHHHhCCCcccchhHHHHH
Q 001966 908 YSEALRLLNEMGESGF-----RLGFASCRTVANDFLREGVMDYAAKV-------------LECMASFGWVSNSISLADIV 969 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~ 969 (989)
..++.++|.+-+...+ + +...|..+...|.+.|+++.|... |+..+.. ..|.+.++..+
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e-~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai 1408 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAE-QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHH
Confidence 7777777776555432 2 566778888888888888877622 2222111 33567777777
Q ss_pred hhhhcCC
Q 001966 970 KGENSGV 976 (989)
Q Consensus 970 ~~~~~~g 976 (989)
..|....
T Consensus 1409 ~Fyl~~~ 1415 (1630)
T 1xi4_A 1409 QFYLEFK 1415 (1630)
T ss_pred HHHHhhC
Confidence 7776555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=250.59 Aligned_cols=231 Identities=16% Similarity=0.073 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.++..++..+...|++++|+..++++++..+. ..++..++..+...|++++|...++++.... +.+...+..++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34444444455555555555555555544444 4444445555555555555555555554432 113344445555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 877 (989)
..|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555555554421 22334455555555555555555555555554 33322 24444555555555555555
Q ss_pred HHHHHHHhCCCCC-C----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 878 KLKDLIFDKRMPI-S----AEAYKAIIKALCK---REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 878 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
+.++++++..+.. . ..++..++.++.. .|++++|+..++++++..|. ++.++..++.+|...|++++|...
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555432220 0 2245555555555 55555555555555555544 455555555555555555555555
Q ss_pred HHHHHh
Q 001966 950 LECMAS 955 (989)
Q Consensus 950 ~~~~~~ 955 (989)
++++.+
T Consensus 472 ~~~a~~ 477 (514)
T 2gw1_A 472 FEESAD 477 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-25 Score=252.60 Aligned_cols=461 Identities=12% Similarity=0.009 Sum_probs=343.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...+......+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|...++++++.++ .+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4566777788888999999999999988764 6888888888889999999999999998888653 366788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
+.+.|++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 889999999999999888776 3455555555555555555555555554444433333333332221111122222222
Q ss_pred HHHHHHHHHCCCCC---------CHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 001966 633 LGIFLELLEKGLVP---------DVDTYNSLITSFCK---ICDVDKAFQLYEEMCE-----KGVE--------PNTLTYN 687 (989)
Q Consensus 633 ~~~~~~~~~~~~~p---------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------~~~~~~~ 687 (989)
..+...+......+ +...+......+.. .|++++|...|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 22222222111111 14444444444444 8999999999999988 3112 2355778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 767 (989)
.+...+...|++++|...++++.+.+ |+..++..++..+...|++++|+..+++++...+.+..++..++..+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999874 3388899999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
+++|...++++.+.... +...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999986433 56788899999999999999999999998842 44577899999999999999999999999
Q ss_pred HHhCCCCCCHH-------HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 848 MLGKGIEPDNF-------TYYVMIDAHCK---EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 848 ~~~~g~~p~~~-------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
+++ ..|+.. .+..++.++.. .|++++|++.++++++..+. +..++..++.++.+.|++++|...+++
T Consensus 398 a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 398 AIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHH--HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH--hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998 455432 78889999999 99999999999999988755 889999999999999999999999999
Q ss_pred HHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 918 MGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 918 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+++..|+ ++.++..+ .+.++....+.+
T Consensus 475 a~~~~~~-~~~~~~~~--------~~~~~~~~~~~~ 501 (514)
T 2gw1_A 475 SADLART-MEEKLQAI--------TFAEAAKVQQRI 501 (514)
T ss_dssp HHHHCSS-HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHhccc-cHHHHHHH--------HHHHHHHHHHHh
Confidence 9999987 66666554 334555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-23 Score=234.69 Aligned_cols=370 Identities=13% Similarity=0.092 Sum_probs=252.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 001966 576 PNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLI 655 (989)
Q Consensus 576 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 655 (989)
.+...+..++..+.+.|++++|+..|+++.+. .+.+..+|..++..+...|++++|+..|.++++.++. +...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34455556666666666666666666666553 2334555555666666666666666666665554322 345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 656 TSFCKICDVDKAFQLYEEMCEKGVEPN-T---LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKE 731 (989)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (989)
..+...|++++|...|+++.+.. |+ . ..+..++..+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 55555555555555555555432 22 2 333333322110 0122234456777
Q ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 732 EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
|++++|+..|+++++..+.+..++..++.+|...|++++|+..++++.+.. +.+..++..++..|...|++++|+..|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888777777788888888888888888888888887642 3366778888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH------------HHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCH
Q 001966 812 EMQQRNLKPA-TITYRSL------------LNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKEGNV 873 (989)
Q Consensus 812 ~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~ 873 (989)
++.+. .|+ ...+..+ +..+...|++++|...|+++++ +.|+. ..+..++.++.+.|++
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 88763 343 3344444 7888999999999999999998 66763 3677788999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH------------HHHHhcC
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA------------NDFLREG 941 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~g 941 (989)
++|++.++++++..+. +..+|..++.+|...|++++|+..++++++..|+ ++.++..++ ..|...|
T Consensus 312 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 9999999999887654 7899999999999999999999999999999888 888888888 4455556
Q ss_pred -----ChhHHHHHHHH-HHhCCCcccc-----------hhHHHHHhhhhcCCChhhH
Q 001966 942 -----VMDYAAKVLEC-MASFGWVSNS-----------ISLADIVKGENSGVDLDES 981 (989)
Q Consensus 942 -----~~~~A~~~~~~-~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~a 981 (989)
+.+++.+.+++ +++ +.||. ..+..+..++...|+.+++
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 55677888886 444 35652 1345556666555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=232.87 Aligned_cols=389 Identities=12% Similarity=0.059 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 524 MDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRC 603 (989)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (989)
...+...+.+..... +.+...+..++..+.+.|++++|..+|+++++.. +.+..++..++..|...|++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455555555542 3467789999999999999999999999998764 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHH------------HHhcCCHHHHH
Q 001966 604 MLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDV---DTYNSLITS------------FCKICDVDKAF 668 (989)
Q Consensus 604 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~------------~~~~g~~~~A~ 668 (989)
+++.+ +.+..++..++..+.+.|++++|...|+++.+..+. +. ..+..++.. +...|++++|+
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99874 447889999999999999999999999999986433 33 556666444 44445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 669 QLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKG 748 (989)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 748 (989)
..|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.+ +.+..++..++..+...|++++|+..|++++...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555554432 2244444445555555555555555555544431 3344444455555555555555555555554444
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH
Q 001966 749 LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TI 823 (989)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~ 823 (989)
+.+...+..+.... ....+..++..+...|++++|+..|+++.+ ..|+ ..
T Consensus 242 p~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQVK-----------------------KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHH
T ss_pred CChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHH
Confidence 43333332220000 000112226666777777777777777766 3343 33
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA- 901 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 901 (989)
.+..++..+.+.|++++|+..++++++ +.|+ ...+..++.++...|++++|++.++++++..+. +..++..++.+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 373 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 566677777777777777777777776 5564 346777777777777777777777777776554 66666666632
Q ss_pred -----------HHccC-----CHHHHHHHHHH-HHHCCCcc--CH-------HhHHHHHHHHHhcCChhHH
Q 001966 902 -----------LCKRE-----EYSEALRLLNE-MGESGFRL--GF-------ASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 902 -----------~~~~g-----~~~~A~~~~~~-~~~~~~~~--~~-------~~~~~l~~~~~~~g~~~~A 946 (989)
|...| +.+++.+.+++ +++..|+. +. ..+..++.+|...|+.+.+
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444 66788888887 66666552 11 1445566666666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-23 Score=236.75 Aligned_cols=431 Identities=10% Similarity=0.046 Sum_probs=206.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...+..+...+.+.|++++|+..|+++....+ .+..+|..+..++.+.|++++|+..++++++.+. .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455666666666777777777766665432 2456666666666666666666666666666532 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR------GILPEVQTYSVLINGLSKK 626 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~ 626 (989)
+...|++++|.+.|+ .... .|+. ....+..+...+...+|...++++... ...|+. ..+..+...
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHh
Confidence 666666666666664 2221 1111 111233344444455566666655432 111222 222233334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 001966 627 LELREALGIFLELLEKGLVPDVD-TYNSLITSFCKI--------CDVDKAFQLYEEMCEKGVEPN-------TLTYNVLI 690 (989)
Q Consensus 627 g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li 690 (989)
.+.+.+...+...... .+... ....+...+... |++++|..+++++.+.... + ..++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 4444443333222111 11111 112222111111 2455555555555543211 1 11233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
..+...|++++|...++++.+. .|+..++..+...+...|++++|++.++++++..+.+..++..++..+...|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 4455555555555555555553 23345555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|...++++++... .+...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++++
T Consensus 329 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555554321 133445555555555555555555555555431 22344555555555555555555555555554
Q ss_pred CCCCCCH-------HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 851 KGIEPDN-------FTYYVMIDAHCKE----------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 851 ~g~~p~~-------~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
..|+. ..+..++.++... |++++|+..++++++..+. +..++..++.++.+.|++++|+.
T Consensus 407 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 407 --LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp --HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 22211 1122333444444 5555555555555554433 44555555555555555555555
Q ss_pred HHHHHHHCCCc
Q 001966 914 LLNEMGESGFR 924 (989)
Q Consensus 914 ~~~~~~~~~~~ 924 (989)
.++++++..|.
T Consensus 484 ~~~~al~~~~~ 494 (537)
T 3fp2_A 484 LFEDSAILART 494 (537)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhCCC
Confidence 55555555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-22 Score=232.14 Aligned_cols=428 Identities=16% Similarity=0.120 Sum_probs=227.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 001966 509 SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGY 588 (989)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 588 (989)
..+..+...+.+.|++++|+..|+++++..+ .+..++..+..++.+.|++++|++.++++++.+ +.+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455555566666666666666666665532 255566666666666666666666666666543 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcC
Q 001966 589 CKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK------GLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g 662 (989)
...|++++|+..|+ .... .|+. ....+..+...+...+|...++.++.. ...|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 66666666666664 2221 1111 111223333444445566666665442 111222 2223334444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHH
Q 001966 663 DVDKAFQLYEEMCEKGVEPNTL-TYNVLIDGFC--------KAGDLTEPFQLFDEMTKRGVPLDGS-------VYNALLS 726 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~ 726 (989)
+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.. |.+.. ++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 444444443332221 11111 1122222211 1235666666666666542 22222 3444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKA 806 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 806 (989)
.+...|++++|+..++++++..+. ..++..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 555666666666666666665554 5556666666666666666666666666542 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 807 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
++.|+++.+.. +.+..++..++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++.++++++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666532 22345566666666666666666666666666 445433 555566666666666666666666654
Q ss_pred CCC-----CCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 886 KRM-----PISAEAYKAIIKALCKR----------EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 886 ~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
..+ ......+..++.++... |++++|+..++++++..|+ ++.++..++.+|...|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 311 11223344555555555 6666666666666666655 5666666666666666666666666
Q ss_pred HHHHhC
Q 001966 951 ECMASF 956 (989)
Q Consensus 951 ~~~~~~ 956 (989)
+++++.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-20 Score=202.86 Aligned_cols=205 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS 839 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 839 (989)
..+...|++++|+..++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33444444444444444444321 1133344444444444444444444444444321 223334444444444444444
Q ss_pred HHHHHHHHHHhCCCCCCHH-HH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TY------------YVMIDAHCKEGNVMEALKLKDLIFDKRMPISA----EAYKAIIKAL 902 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~ 902 (989)
+|...++++++ ..|+.. .+ ..++..+.+.|++++|++.++++++..+. +. ..+..++.++
T Consensus 206 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 206 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 44444444444 333322 11 12245566666666666666666655433 33 2244456666
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
.+.|++++|+..++++++..|. ++.++..++.+|...|++++|.+.++++++. .|+ ...+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 6666666666666666666555 5666666666666666666666666666543 454 33444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-20 Score=204.35 Aligned_cols=321 Identities=15% Similarity=0.098 Sum_probs=276.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLID 691 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 691 (989)
++..+..+...+...|++++|+..|.++++..+. +...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888999999999999999999999987544 67889999999999999999999999999863 336788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVP---LDGSVYNAL------------LSGCCKEEKLEQALELFRDMLEKGLASTLSFN 756 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 756 (989)
.+...|++++|...++++.+.. + .+...+..+ ...+...|++++|++.++++++..|.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999863 3 355555555 57888999999999999999999998899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 001966 757 TLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYR---------- 826 (989)
Q Consensus 757 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---------- 826 (989)
.++..+...|++++|...++++++.. +.+...+..++..+...|++++|+..|++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999763 3477899999999999999999999999998842 33344333
Q ss_pred --HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 827 --SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 827 --~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
.++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++.++++++..+. +..+|..++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 336778999999999999999999 667643 3445779999999999999999999998655 899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.++...|++++|...++++++..|+ ++.++..++.++...+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 8888888877665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-18 Score=195.91 Aligned_cols=378 Identities=16% Similarity=0.116 Sum_probs=199.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 001966 528 RIYLVEMLRRGLKPNIHSFRAFILGYCM----AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK----EGNIAEAIS 599 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 599 (989)
...+....+.| +..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444432 45555555555555 566666666666666543 44555556666666 566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHH
Q 001966 600 KFRCMLARGILPEVQTYSVLINGLSK----KLELREALGIFLELLEKGLVPDVDTYNSLITSFCK----ICDVDKAFQLY 671 (989)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 671 (989)
.|++..+.| +...+..|...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|.++|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 666666543 44455555555555 556666666666655543 34444455555544 45566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCK----AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK----EEKLEQALELFRD 743 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 743 (989)
++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|+.+|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 6555543 44555555555554 555566666665555543 34455555555553 4555555555555
Q ss_pred HHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 001966 744 MLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV-----QNMEKAKQLFLEMQ 814 (989)
Q Consensus 744 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 814 (989)
..+.+ +..++..++..|.. .+++++|+..|++..+.+ +...+..+...|... +++++|+..|++..
T Consensus 249 a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 249 SAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 55443 23344455555554 555555555555555432 334444455555444 55555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 001966 815 QRNLKPATITYRSLLNGYNRMG---NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 815 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 887 (989)
+.+ +...+..++..|...| +.++|+..|++..+. .+...+..++..+.. .+++++|++.++++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 432 2334444555554434 455555555555552 233445555555555 455555555555555543
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHH
Q 001966 888 MPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFR-L-GFASCRTVANDF 937 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 937 (989)
++.++..++.+|.. .+++++|...|+++.+.+++ | ++.+...++..+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 34555555555554 55555555555555555422 1 334444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-20 Score=198.76 Aligned_cols=292 Identities=12% Similarity=0.053 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 680 EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 680 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
..+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|+.+++++++..+.+..++..++
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566667777777888888888888887763 455566666777778888888888888888888887778888888
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 760 EFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNR 838 (989)
Q Consensus 760 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 838 (989)
..+...| ++++|...++++++.. +.+...|..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888888653 2245677888888888888888888888887742 33456777788888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHccCCHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM--------PISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~ 909 (989)
++|...++++++ ..|+.. .+..++..+...|++++|+..++++++..+ +....++..++.++...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888 667544 777788888888888888888888876421 334678888888888889999
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhh-hcCCChh
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGE-NSGVDLD 979 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~ 979 (989)
+|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++ +.|+ ...+..++..+ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 999999888888877 788888888888888999999888888854 4674 66777777777 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-17 Score=188.75 Aligned_cols=380 Identities=13% Similarity=0.078 Sum_probs=272.9
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 001966 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCK----EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSK----KLELREALG 634 (989)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 634 (989)
.+.+....+. .+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4444444443 356666777777777 778888888888877763 56677777777777 778888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHH
Q 001966 635 IFLELLEKGLVPDVDTYNSLITSFCK----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK----AGDLTEPFQLF 706 (989)
Q Consensus 635 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 706 (989)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877764 45566667667766 678888888888877764 56667777777776 67788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 001966 707 DEMTKRGVPLDGSVYNALLSGCCK----EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAM 778 (989)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 778 (989)
++..+.| +...+..+...|.. .++.++|+++|++..+.+ +..++..++..|.. .+++++|..+|++.
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8877764 66777777777776 778888888888887764 45567777777776 67888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHH
Q 001966 779 LEEQVNPNHDTYTTLINQYCK----VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM-----GNRSEVFVVFEEML 849 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 849 (989)
.+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..++..|... +++++|+..|+++.
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 7653 45566667777766 778888888888877643 455666777777766 78888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 001966 850 GKGIEPDNFTYYVMIDAHCKEG---NVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESG 922 (989)
Q Consensus 850 ~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 922 (989)
+.| +...+..++.++...| ++++|++.++++.+.+ ++.++..++..|.. .+++++|...++++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 743 3456667777776655 6788888888887753 67778888888877 778888888888887765
Q ss_pred CccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc-c-cchhHHHHHhhhhc
Q 001966 923 FRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFGWV-S-NSISLADIVKGENS 974 (989)
Q Consensus 923 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~ 974 (989)
++.++..|+.+|.. .+++++|..+|+++.+.+.. | +......++..+..
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 56777888888887 78888888888888766432 3 34455556555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=194.55 Aligned_cols=294 Identities=13% Similarity=0.020 Sum_probs=237.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 645 VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 645 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
..+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3355566677777888888888888888887763 2244556667777888888888888888888763 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 725 LSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 725 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
...+...| ++++|+..|+++++..+.+..++..++..+...|++++|+..++++.+.... +...+..++..|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 88888888 8899999999998888877888888999999999999999999988875322 456677788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----C----CCCHHHHHHHHHHHHhcCCHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG----I----EPDNFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~----~p~~~~~~~l~~~~~~~g~~~~ 875 (989)
++|++.+++..+.. +.+..++..++..+...|++++|...++++++.. . ......+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988753 4457788889999999999999999999988721 0 1224578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH-HhcCChh
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF-LREGVMD 944 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 944 (989)
|++.++++++..+. +..++..++.++.+.|++++|...++++++..|+ ++.++..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 99999999988765 7889999999999999999999999999999887 889999999988 5556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-18 Score=193.63 Aligned_cols=429 Identities=13% Similarity=0.073 Sum_probs=296.2
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 496 VERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLV 575 (989)
Q Consensus 496 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (989)
|++..+..+ -+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 344444422 26677888887 467888888888888888753 3366778888888888888888888888888663
Q ss_pred CCHHhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 001966 576 PNDVIYTSIVDGY-CKEGNIAEAIS----KFRCMLAR-GIL-PEVQTYSVLINGLSK---------KLELREALGIFLEL 639 (989)
Q Consensus 576 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-p~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 639 (989)
|+...|..++... ...|+.++|.+ +|+..+.. |.. ++...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666666433 34566666554 66665543 333 355667776665544 56777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------HHCC
Q 001966 640 LEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM------TKRG 713 (989)
Q Consensus 640 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~ 713 (989)
++....+....|..........|. .+...++. .+.+++..|..++... .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 762111111222221111000010 00011110 1234455666655542 2211
Q ss_pred ---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCChhhHHHHHHHHHH-------cCC
Q 001966 714 ---VPLD--------GSVYNALLSGCCKE----EKL----EQALELFRDMLEKGLASTLSFNTLIEFLCI-------SNK 767 (989)
Q Consensus 714 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~ 767 (989)
++|+ ...|...+...... ++. +.++.+|++++...|.+...|..++..+.+ .|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 2443 24555555443322 222 478889999999988888999999988876 688
Q ss_pred HH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCH
Q 001966 768 LQ-------EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T-ITYRSLLNGYNRMGNR 838 (989)
Q Consensus 768 ~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~ 838 (989)
++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCH
Confidence 76 9999999998632233678899999999999999999999999998 4565 3 5899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDN-FTYYVMIDA-HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
++|..+|+++++ ..|.. ..+...+.. +...|++++|.++|+++++..+. +...|..++..+.+.|+.++|..+|+
T Consensus 373 ~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 373 KSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998 55543 233333333 33589999999999999987655 88999999999999999999999999
Q ss_pred HHHHCCCc-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 917 EMGESGFR-L--GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 917 ~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++++..+. | ....|..++......|+.+.+..+++++.+.
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998654 1 2347888888889999999999999998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-20 Score=199.66 Aligned_cols=260 Identities=14% Similarity=0.044 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH
Q 001966 685 TYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI 764 (989)
Q Consensus 685 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 764 (989)
.+..+...+.+.|++++|...|+++.+.. |.+..++..++..+...|++++|++.|+++++..+.+..++..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455555555556666666665555542 44555555555555566666666666666655555555555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 001966 765 SNKLQEAHQLLDAMLEEQVNPNHDTY----------------TTLINQYCKVQNMEKAKQLFLEMQQRNLKP---ATITY 825 (989)
Q Consensus 765 ~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 825 (989)
.|++++|...+++++..... +...+ ..+...+ ..|++++|+..|+++.+. .| +..++
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 66666666666655543211 11111 1222233 667777777777777763 33 35677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..+...|++++|+..++++++ +.|+. ..+..++.++...|++++|++.++++++..+. +..++..++.++.+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 7777777777777777777777777 55643 36667777777777777777777777776544 66777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCccC-----------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLG-----------FASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.|++++|...++++++..|+ + ..+|..++.+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 77777777777777766554 3 567777777777777777777766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=197.21 Aligned_cols=284 Identities=12% Similarity=-0.028 Sum_probs=236.8
Q ss_pred HhcCChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHH
Q 001966 694 CKAGDLTEPFQ-LFDEMTKRGV---PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQ 769 (989)
Q Consensus 694 ~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 769 (989)
...|++++|.. .+++...... ..+...+..+...+...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34578888888 8876654321 1134567788999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH----------------HHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYR----------------SLLNGY 832 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~----------------~l~~~~ 832 (989)
+|+..++++++.. +.+..++..++..|...|++++|++.++++.+. .|+ ...+. .+...+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999764 337889999999999999999999999999984 343 22222 234444
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPD---NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 909 (989)
..|++++|...++++++ ..|+ ..++..++.++...|++++|++.++++++..+. +..+|..++.++...|+++
T Consensus 193 -~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp -HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred -hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999 6676 558888999999999999999999999988655 7899999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc------------chhHHHHHhhhhcCCC
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN------------SISLADIVKGENSGVD 977 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~ 977 (989)
+|+..++++++..|. ++.++..++.+|...|++++|...++++++. .|+ ...|..++..+...|+
T Consensus 269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999999887 8999999999999999999999999999764 453 4789999999999999
Q ss_pred hhhHHHHHhh
Q 001966 978 LDESKDLMKQ 987 (989)
Q Consensus 978 ~~~a~~~~~~ 987 (989)
+++|.+++++
T Consensus 346 ~~~A~~~~~~ 355 (368)
T 1fch_A 346 SDAYGAADAR 355 (368)
T ss_dssp GGGHHHHHTT
T ss_pred hHhHHHhHHH
Confidence 9999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-17 Score=188.91 Aligned_cols=426 Identities=9% Similarity=0.061 Sum_probs=293.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 531 LVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGIL 610 (989)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 610 (989)
+++.++..+ -+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 445555432 26777888887 477888888888888888753 556677888888888888888888888888875 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 001966 611 PEVQTYSVLINGL-SKKLELREALG----IFLELLEK-GLVP-DVDTYNSLITSFCK---------ICDVDKAFQLYEEM 674 (989)
Q Consensus 611 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 674 (989)
|+...|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 34566666554 66655543 4333 45566666655443 56777778888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC
Q 001966 675 CEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM------LEKG 748 (989)
Q Consensus 675 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~ 748 (989)
++....+....|..........|. .+...++. ...+++..|..+++.. ++..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111111222222111100110 00111110 1234566677666652 2221
Q ss_pred ----CCC--------hhhHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 001966 749 ----LAS--------TLSFNTLIEFLCIS----NKL----QEAHQLLDAMLEEQVNPNHDTYTTLINQYCK-------VQ 801 (989)
Q Consensus 749 ----~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 801 (989)
+|. ...|...+...... ++. +++..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 222 13444444332221 222 47888999998752 3367889888888875 79
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 001966 802 NME-------KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN--FTYYVMIDAHCKEGN 872 (989)
Q Consensus 802 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 872 (989)
+++ +|+.+|++..+.-.+.+...|..++..+...|++++|..+|+++++ +.|+. ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcC
Confidence 987 9999999998632344578999999999999999999999999999 78864 378888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++|.++|+++++..+. +...|...+.. +...|+.++|..+|+++++..|+ ++.+|..++..+.+.|+.++|+.+|+
T Consensus 372 ~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999999987543 55555554444 34689999999999999999887 89999999999999999999999999
Q ss_pred HHHhCC-Cccc--chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 952 CMASFG-WVSN--SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 952 ~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+++... ..|+ ...|...+......|+.+.+.++.+++
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998753 2332 336777788888889999999887764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=198.31 Aligned_cols=262 Identities=12% Similarity=-0.035 Sum_probs=203.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
+...+..++..+.+.|++++|+..|+++++..|.+..++..++..+...|++++|+..|+++++.. +.+..++..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344577777778888888888888888888877777888888888888888888888888887653 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HHHHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPAT-----------ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD---NFTYYV 862 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ 862 (989)
|...|++++|++.|+++.+. .|+. ..+..++..+...|++++|...++++++ ..|+ ..++..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 88888888888888888763 3332 2233457788888999999999999988 5665 557888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++...|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 888899999999999999999887655 7888999999999999999999999999988877 78889999999999999
Q ss_pred hhHHHHHHHHHHhCCCccc-------------chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 943 MDYAAKVLECMASFGWVSN-------------SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 943 ~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+++|...++++++. .|+ ...|..++..+...|+.+.+.+..++
T Consensus 297 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988764 333 56788888888888988888877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-17 Score=184.06 Aligned_cols=380 Identities=10% Similarity=-0.065 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNS--------GLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR-----G- 608 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 608 (989)
...|+.+...+...|++++|++.|++.++. .-+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777777777777777766531 11223356666777777777777777777665432 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 609 -ILPEVQTYSVLINGLSK--KLELREALGIFLELLEKGLVPDVDTYNSLITS---FCKICDVDKAFQLYEEMCEKGVEPN 682 (989)
Q Consensus 609 -~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 682 (989)
......++..+..++.. .+++++|+..|++.++..+. +...+..+... +...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01123344444444433 33566666666666665332 33333333333 233455566666666665542 123
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001966 683 TLTYNVLIDGFCK----AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTL 758 (989)
Q Consensus 683 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 758 (989)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|+..++++++..|.+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4444444433332 345566666666665542 44556666666666666666666666666666666666666655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNR 838 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 838 (989)
+..|...+....+.. ...........+.+++|+..+++..+.. +.+..++..++..+...|++
T Consensus 288 g~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 555433211110000 0000001112234678888888888742 33456788899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF----TYYVMID-AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
++|+..|+++++ +.|+.. .+..++. .....|++++|+..|+++++..+. +.... +....+.+
T Consensus 351 ~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~~~~----------~~~~~l~~ 417 (472)
T 4g1t_A 351 EEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SREKE----------KMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHH----------HHHHHHHH
Confidence 999999999998 555543 2333333 345789999999999999987654 33221 22455677
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++++.++.+|. ++.+|..||.+|...|++++|++.|+++++.
T Consensus 418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888888888 8999999999999999999999999999875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-17 Score=185.05 Aligned_cols=395 Identities=12% Similarity=-0.015 Sum_probs=260.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRR--------GLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS-----G 573 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 573 (989)
....||.+...+...|++++|++.|++.++. .-.....+|..+...|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999988652 11224678999999999999999999999987642 1
Q ss_pred --CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 574 --LVPNDVIYTSIVDGYCKE--GNIAEAISKFRCMLARGILPEVQTYSVLING---LSKKLELREALGIFLELLEKGLVP 646 (989)
Q Consensus 574 --~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~p 646 (989)
......++..+..++.+. +++++|+..|++.++.. +.+...+..+... +...++.++|++.+++.++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 112345666666666654 57999999999998863 2355566555554 44567889999999998887543
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001966 647 DVDTYNSLITSFCK----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYN 722 (989)
Q Consensus 647 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 722 (989)
+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...++++.+.. |.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666555544 467889999999988764 3477788999999999999999999999999873 66788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN 802 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 802 (989)
.+...|...+.... .... ..........+.+++|...+++..+... .+...+..++..|...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLRE------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHHH------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhcc
Confidence 88777653221111 1000 0111111223346778888888876432 244567778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPAT--ITYRSLLN-GYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 879 (989)
+++|++.|++..+....|.. ..+..++. .....|+.++|+..|+++++ +.|+...... ..+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHH
Confidence 99999999988874322221 12333333 24567899999999999999 8887653322 23445667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+++.++.++. ++.+|..++.+|...|++++|++.|+++++.++. .|.+...+|
T Consensus 419 ~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~-~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSL-IPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcHhhcCC
Confidence 7777777655 7889999999999999999999999999998876 666655544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=187.43 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFL 762 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 762 (989)
...+..+...+.+.|++++|...|+++.+.. |.+..++..++..+...|++++|+..|+++++..|.+..++..++..|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3345666666677777777777777776653 556677777777777777777777777777777776677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVN---------PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP--ATITYRSLLNG 831 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 831 (989)
...|++++|+..++++++.... .....+..++..+...|++++|++.|+++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 7777777777777777653110 012234456778889999999999999998843 22 57789999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|+..++++++ +.|+. .++..++.++...|++++|++.++++++..+. +..+|..++.+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998 67754 48888999999999999999999999988755 78999999999999999999
Q ss_pred HHHHHHHHHHCCCcc-----------CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 911 ALRLLNEMGESGFRL-----------GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 911 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
|+..++++++..|+. +..+|..++.++...|+.+.|.+..++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998876441 257789999999999999998887764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-18 Score=181.16 Aligned_cols=271 Identities=13% Similarity=-0.032 Sum_probs=155.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC
Q 001966 687 NVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN 766 (989)
Q Consensus 687 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 766 (989)
..+...+...|++++|..+|+++.+.. +.+..++..++..+...|++++|+..++++++..+.+..++..++..+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 344444555555555555555554432 3344455555555555555555555555555554444445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHhHHHHH
Q 001966 767 KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSL-LN-GYNRMGNRSEVFVV 844 (989)
Q Consensus 767 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~-~~~~~g~~~~A~~~ 844 (989)
++++|...++++.+.... +...+..+.. ..|+......+ .. .+...|++++|...
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 555555555555443111 1111111100 00000011111 22 25566777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 845 FEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 845 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|
T Consensus 161 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALE--MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777776 4554 336666777777777777777777777766544 667777777777777777777777777777766
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-------------chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 924 RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-------------SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
. ++.++..++.+|...|++++|.+.++++.+. .|+ ...+..++..+...|++++|...+++
T Consensus 238 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 238 G-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5 6777777777777777777777777777653 343 45667777777777777777776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-18 Score=181.90 Aligned_cols=280 Identities=12% Similarity=0.011 Sum_probs=226.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLS 726 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (989)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456778888999999999999999999864 3477888999999999999999999999999874 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHH
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN--QYCKVQNME 804 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~ 804 (989)
.+...|++++|++.++++++..+.+...+..+...+ |+......+.. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 999999999999999999998886555544432111 11112223322 366788899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
+|++.++++.+.. +.+..++..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988743 44677889999999999999999999999998 66754 47888899999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----------CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 884 FDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----------GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
++..+. +..++..++.++...|++++|...++++++..|.. ++.++..++.++...|++++|...+++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 987655 78899999999999999999999999999887653 477899999999999999999999876
Q ss_pred HH
Q 001966 953 MA 954 (989)
Q Consensus 953 ~~ 954 (989)
++
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 53
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=173.13 Aligned_cols=258 Identities=10% Similarity=0.016 Sum_probs=179.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDG--SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+++..++..++..+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34567777777776655432 2222 2344556777777777777765544 244556667777777777777788
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 771 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
|++.+++++..+..| +...+..++..+...|++++|++.+++ +.+..++..++..+.+.|++++|...+++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887777655434 455666677777788888888877776 4556677777888888888888888888887
Q ss_pred hCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 850 GKGIEPDNFTYY---VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 850 ~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+ ..|+..... .++..+...|++++|+.+|+++++..+. +..+|..++.++.+.|++++|+..++++++..|+ +
T Consensus 158 ~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 158 D--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred h--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 7 566654211 1223344557788888888888877544 7788888888888888888888888888888877 7
Q ss_pred HHhHHHHHHHHHhcCChhH-HHHHHHHHHhCCCcccchhHHH
Q 001966 927 FASCRTVANDFLREGVMDY-AAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+.++..++.++...|+..+ +.++++++++. .|+......
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~d 273 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 8888888888888888865 56777777653 676554433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=174.11 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
+.+|+.|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++.+++ ..+++.+.+.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-----~~~~~~i~~~L 100 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-----KARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCccchhHHHH
Confidence 347777777777777777777777543 4555677777777777777777776555554 23446667777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRL 314 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 314 (989)
+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..++.++++.|++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 777777777777776663 256667777777777777777777777765 2567777777777777
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001966 315 GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI 394 (989)
Q Consensus 315 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 394 (989)
++|.+.++++ .++.+|..++.+|+..|+++.|......+. . +......++..|.+.|++++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766 256677777777777777777754444321 1 2222335666677777777777777766
Q ss_pred HHCCCCCChhhHHHHHHHHHh
Q 001966 395 IRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 395 ~~~g~~~~~~~~~~li~~~~~ 415 (989)
+... +.....|+-|.-.|++
T Consensus 234 L~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHT
T ss_pred hCCc-HHHHHHHHHHHHHHHh
Confidence 6443 3344455555555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-17 Score=170.18 Aligned_cols=256 Identities=9% Similarity=0.052 Sum_probs=196.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 657 SFCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL 734 (989)
Q Consensus 657 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 734 (989)
-....|+++.|+...+..... .|+ ......+..+|...|++++|+..++. . -+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345678888888877665443 233 23445567788888888888876644 2 356677788888888888888
Q ss_pred HHHHHHHHHHHHcC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 735 EQALELFRDMLEKG--LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 735 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
++|++.+++++..+ |.+...+..++..+...|++++|++.+++ +.+...+..++..|.+.|++++|++.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888764 55677778888888999999999988876 35777888888899999999999999999
Q ss_pred HHHCCCCCCHH-HH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001966 813 MQQRNLKPATI-TY--RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 813 ~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 888 (989)
+.+. .|+.. .. ..++..+...|++++|..+|+++++ ..|+.. .+..++.++.+.|++++|++.++++++..+
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8874 45532 11 1223334456889999999999998 566544 788888999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCCCccCHHhH
Q 001966 889 PISAEAYKAIIKALCKREEYSE-ALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~ 930 (989)
. ++.++..++..+...|+.++ +.++++++++..|+ ++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~ 272 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK 272 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 6 88899999999999998865 57888999998887 66654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-17 Score=171.41 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=54.1
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRL 319 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (989)
+.|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556677777777666 23346667777777777777777766542 355566666666666666666666
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001966 320 VLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGI 399 (989)
Q Consensus 320 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 399 (989)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55544442 3345555666666666666666555553 244455555666566666666666655544
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 001966 400 EPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNL 479 (989)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 479 (989)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|......+. .++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 23555555555555555555555555 144555555555555555555543333211 111112234
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 001966 480 VSTYFKKNKLQEAGKLVERMR 500 (989)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~ 500 (989)
+..|.+.|.+++|..+++...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 444444444444444444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-19 Score=198.95 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=126.4
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 001966 224 FEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGE---KGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT 300 (989)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 300 (989)
...-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 444567999999999999999999999988764 58899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHH
Q 001966 301 YVNLIYGFSAAKRL-GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQID------LVIYNT 373 (989)
Q Consensus 301 ~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~ 373 (989)
|+++|.++|+.|+. ++|.++|++|.+.|+.||.++|+.++.+..+.+-++.. +++ .-++.|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHH
Confidence 99999999999985 78899999999999999999999998776655433333 222 2234443 455566
Q ss_pred HHHHHHhcC
Q 001966 374 LLKGFCKSG 382 (989)
Q Consensus 374 li~~~~~~g 382 (989)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 677777655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=161.86 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV--NPN----HDTYT 791 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 791 (989)
...+..+...+...|++++|+..|+++++.. .+..++..++..+...|++++|+..++++++... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3456667777777888888888888887777 7777778888888888888888888887775321 112 46778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.++..+...|++++|++.|++..+ ..|+. ..+...|++++|...+++++. ..|+.. .+..++..+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 888888888999999999888887 44553 345566788999999999988 677655 777888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999987755 7889999999999999999999999999998877 8889999999999999999999999
Q ss_pred HHHHhC
Q 001966 951 ECMASF 956 (989)
Q Consensus 951 ~~~~~~ 956 (989)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=191.55 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=97.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 001966 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVE---KGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYY 337 (989)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 337 (989)
.-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457888888888888888888888877764 4778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 338 ALIDGFVKQGDV-EEAFRVKDELVASGNQIDLVIYNTLLKGFCKS 381 (989)
Q Consensus 338 ~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 381 (989)
++|+++|+.|+. ++|.++|++|.+.|+.||.++|+.++.+..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 888888888774 67778888888888888888888877665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=159.02 Aligned_cols=193 Identities=15% Similarity=0.050 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|+..|++.++.. +.+...+..++..+.+.|++++|+..|++..+.. +.+...+..++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344444445555555555555555544432 1134444444444555555555555555544421 2223344444444
Q ss_pred HHhc-----------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 832 YNRM-----------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 832 ~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+... |++++|+..++++++ +.|+.. .+..++.++...|++++|++.++++++.+ .++.++..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 4444 444444444444444 444322 34444444444444444444444444443 2444444444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
.++...|++++|+..++++++..|+ ++.++..++.++...|++++|.+.++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444444444444 44444444444444444444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-16 Score=168.77 Aligned_cols=247 Identities=13% Similarity=0.082 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK-LQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
..+|..+...+...|++++|++.++++++.+|.+..+|..++.++...|+ +++|+..++++++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45677777888888889999999999998888888888888989999996 9999999999887532 267788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh-cCCHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK-EGNVM 874 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~-~g~~~ 874 (989)
+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..++++++ +.|++. .|..++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 989999999999999998843 44577889999999999999999999999998 788655 88888888888 56657
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC------
Q 001966 875 EA-----LKLKDLIFDKRMPISAEAYKAIIKALCKRE--EYSEALRLLNEMGESGFRLGFASCRTVANDFLREG------ 941 (989)
Q Consensus 875 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 941 (989)
+| ++.++++++..+. +..+|..++.++...| ++++|++.++++ +..++ ++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 77 5889999988766 8889999999999888 689999999887 66666 7888999999998874
Q ss_pred --C-hhHHHHHHHHH-HhCCCccc-chhHHHHHhhhh
Q 001966 942 --V-MDYAAKVLECM-ASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 942 --~-~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~ 973 (989)
+ +++|+++++++ .+ +.|+ ...|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 58899999988 55 4785 566766666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=156.41 Aligned_cols=197 Identities=13% Similarity=-0.023 Sum_probs=155.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHH
Q 001966 784 NPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYV 862 (989)
Q Consensus 784 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 862 (989)
+++...+..++..+.+.|++++|+..|++..+.. +.+...+..++.++...|++++|+..++++++ +.|+.. .+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 3466678888888999999999999999988742 44577888899999999999999999999998 778655 7888
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 863 MIDAHCKE-----------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 863 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++.++... |++++|+..++++++.+|. +..+|..++.++...|++++|+..++++++.. + ++.++.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-D-TPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-CHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-chHHHH
Confidence 88888888 9999999999999988766 78889999999999999999999999998888 5 888899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.++.+|...|++++|...++++++. .|+ ...+..++..+...|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999998764 674 677888899999999999998888763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-16 Score=158.67 Aligned_cols=237 Identities=17% Similarity=0.113 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------hhhH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS-------TLSF 755 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 755 (989)
...+..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|++.++++++..+.. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777788888888888888887765 667778888888888888888888888888765522 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..++..+...|++++|...++++.+. .|+. ..+...|++++|+..++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888999999999999999998874 3443 34666788999999999998842 33456888999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++++..+. +..+|..++.++.+.|++++|...
T Consensus 153 ~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998 66754 47888999999999999999999999988755 789999999999999999999999
Q ss_pred HHHHHHCC------CccCHHhHHHHHH
Q 001966 915 LNEMGESG------FRLGFASCRTVAN 935 (989)
Q Consensus 915 ~~~~~~~~------~~~~~~~~~~l~~ 935 (989)
++++++.. |. +..++..+..
T Consensus 230 ~~~a~~~~~~~~~~p~-~~~~~~~l~~ 255 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSS-AREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHTTTT-HHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCc-hHHHHHHHHH
Confidence 99999887 44 4555555544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=159.04 Aligned_cols=249 Identities=11% Similarity=0.018 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP--NHDTYTTLINQ 796 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 796 (989)
..+......+...|++++|+..|+++++..|.+..++..++..+...|++++|+..++++++....+ ....|..++..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455677788899999999999999999988888889999999999999999999999998743222 23458889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME 875 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 875 (989)
+...|++++|++.|++..+.. +.+..++..++..+...|++++|+..++++++ ..|+.. .+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 44567899999999999999999999999988 677655 77777745555679999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCC---CccC----HHhHHHHHHHHHhcCChhH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREE---YSEALRLLNEMGESG---FRLG----FASCRTVANDFLREGVMDY 945 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~ 945 (989)
|++.++++++..+. +...+..++.++...|+ +++|+..++++++.. +.++ ..++..++.+|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999988765 78889999999999998 888999999988764 3321 2578889999999999999
Q ss_pred HHHHHHHHHhCCCccc-chhHHHHHhhhh
Q 001966 946 AAKVLECMASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 946 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 973 (989)
|.+.++++++. .|+ ...+-.+.....
T Consensus 240 A~~~~~~al~~--~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 240 ADAAWKNILAL--DPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHC----
T ss_pred HHHHHHHHHhc--CccHHHHHHHhhhhhc
Confidence 99999999874 686 444554444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=169.30 Aligned_cols=346 Identities=13% Similarity=0.083 Sum_probs=168.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 549 FILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNI---AEAISKFRCMLARGILPEVQTYSVLINGLSK 625 (989)
Q Consensus 549 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 625 (989)
+...+.+.|++++|.+.|.+..+.| +...+..+...|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555667777777777777776654 333445556666666666 7777777776643 34445555554444
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 626 KL-----ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVD---KAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 626 ~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
.+ ++++|+..|++..+.|... .+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 5667777777776655332 4445555555444332 2344444443333 2334445555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc----CCHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE---KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS----NKLQE 770 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 770 (989)
.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.++++...+..|+..|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 44443333222221111112225555666666666 666666666666666665555555555555443 46666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHhHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQ-Y--CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-----NRSEVF 842 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 842 (989)
|...|++.. . -+...+..+... + ...+++++|++.|++..+.| +...+..|+..|. .| ++++|+
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 666666655 2 233444445544 2 34556666666666665533 4445555555554 33 566666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHH
Q 001966 843 VVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRL 914 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 914 (989)
..|++.. .| +...+..|+.+|.. ..++++|.+.|+++.+.| +..+...|+.+|.. ..+.++|...
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 6666554 11 33355555555544 225666666666665544 23344555555543 3456666666
Q ss_pred HHHHHHCC
Q 001966 915 LNEMGESG 922 (989)
Q Consensus 915 ~~~~~~~~ 922 (989)
++++.+.+
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 66666555
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-15 Score=161.68 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEK-LEQALELFRDMLEKGLASTLSFNTLIEF 761 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 761 (989)
...|..+...+.+.|++++|+..++++++.+ |.+..+|+.+..++...|+ +++|+..|+++++.+|.+..+|..++.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888889999999999999999874 6688999999999999996 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhH
Q 001966 762 LCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR-MGNRSE 840 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 840 (989)
+...|++++|+..|+++++... .+...|..+..++...|++++|+..|+++++.. +.+..+|+.++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999998642 377899999999999999999999999999853 4457799999999999 666588
Q ss_pred H-----HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------
Q 001966 841 V-----FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE------ 906 (989)
Q Consensus 841 A-----~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 906 (989)
| +..|+++++ +.|+.. .|..++.++...| ++++|++.++++ +.++. +..++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 8 589999999 889766 8888899998888 699999999998 65544 8889999999999874
Q ss_pred --C-HHHHHHHHHHH-HHCCCccCHHhHHHHHHHHHhc
Q 001966 907 --E-YSEALRLLNEM-GESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 907 --~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+ +++|+++++++ ++..|. ....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 3 59999999999 888876 777888887766544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-15 Score=165.51 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001966 754 SFNTLIEFLCISN---KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV----QNMEKAKQLFLEMQQRNLKPATITYR 826 (989)
Q Consensus 754 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~ 826 (989)
++..|+..|...| ++++|+..|++..+.| .++...+..+...|... +++++|++.|++.. +-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 4444555555555 4555555555555443 22333333344444322 34555555555543 22233344
Q ss_pred HHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 827 SLLNG-Y--NRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG-----NVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 827 ~l~~~-~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.|+.. + ...+++++|+..|++..+.| +...+..|+.+|. .| ++++|++.|+++. . -++.++..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44443 2 23445555555555554432 3334444444443 33 4555555555544 1 144445555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 001966 899 IKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASF 956 (989)
Q Consensus 899 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 956 (989)
+..|.. ..++++|...|+++.+.+ ++.+...|+..|.. ..+..+|..+++++.+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 544443 224555555555554443 33444455554443 23445555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-14 Score=144.75 Aligned_cols=224 Identities=16% Similarity=0.088 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTT 792 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 792 (989)
+..++..+...+...|++++|+..|++..+ +.+..++..++..|.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 566777778888888888888888888887 3455677788888888 888888888888888764 6777888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 793 LINQYCK----VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPDNFTYYVMI 864 (989)
Q Consensus 793 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 864 (989)
+...|.. .+++++|++.|++..+.+ +..++..++..|.. .+++++|+..|+++++.+ +...+..++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 8888888 899999999999888753 67788888888888 899999999999998843 456777888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 865 DAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 865 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
.++.. .+++++|++.++++.+.+ +..++..++.+|.. .+++++|+..++++++.+ ++.++..++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 88887 899999999999998864 56888889999999 999999999999999886 37788899999
Q ss_pred HHh----cCChhHHHHHHHHHHhCC
Q 001966 937 FLR----EGVMDYAAKVLECMASFG 957 (989)
Q Consensus 937 ~~~----~g~~~~A~~~~~~~~~~~ 957 (989)
|.. .|++++|.+.++++.+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 998 999999999999988753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-15 Score=154.07 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--ChhhHHHHHHHH
Q 001966 686 YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-A--STLSFNTLIEFL 762 (989)
Q Consensus 686 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~ 762 (989)
+......+...|++++|+..|+++.+.. |.+...+..+...+...|++++|++.++++++... + ...++..++..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566667777777777777777653 44455666777777777777777777777777322 1 122367777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 842 (989)
...|++++|+..+++..+... .+...+..++..|...|++++|++.|++..+. .+.+..++..++..+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877776432 24567777788888888888888888877764 2334566777773444455888888
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 001966 843 VVFEEMLGKGIEPDN-FTYYVMIDAHCKEGN---VMEALKLKDLIFDKR-MPIS------AEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 911 (989)
..++++++ +.|+. ..+..++.++...|+ +++|+..++++++.. ..|+ ..+|..++..|...|++++|
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888 66764 366677777777777 777888888887652 1122 25777888888888888888
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+..++++++..|+ ++.++-.+.......
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC------
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhhccc
Confidence 8888888888877 777776666554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-15 Score=154.70 Aligned_cols=245 Identities=10% Similarity=-0.047 Sum_probs=112.5
Q ss_pred CChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGV---PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
|++++|+..++++.+... +.+..++..++..+...|++++|+..|+++++..+.+..++..++..+...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554311 11234444555555555555555555555555555455555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 001966 774 LLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI 853 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 853 (989)
.++++++.. +.+...+..++..|...|++++|+..|+++.+ ..|+..........+...|++++|...+++++. .
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~ 173 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE--K 173 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH--H
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 555555431 11334445555555555555555555555554 223322222222233344555555555555544 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 854 EPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI---SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 854 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
.|+......++..+...++.++|++.++++++..+.. +...+..++.++.+.|++++|...++++++..|+ +.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--- 249 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF--- 249 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---
Confidence 3332222234444444555555555555554432210 1344555555555555555555555555554433 21
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 001966 931 RTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~~ 950 (989)
...+.++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 12234444455555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=145.24 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGY 832 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 832 (989)
..+..++..+...|++++|...++++++.. +.+...+..++..|...|++++|++.++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345555555666666666666666665432 2245556666666666666666666666666532 33455666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
...|++++|...++++++.+..|+.. .+..++.++...|++++|++.++++++..+. +...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766533445443 5666667777777777777777777766544 566777777777777777777
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
...++++++..|. +...+..++.++...|++++|.+.++++.+. .|+..
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCH
Confidence 7777777776665 6667777777777777777777777777653 45443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=154.55 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=200.6
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 730 KEEKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..|++++|+..++++++..+ .+..++..++..+...|++++|...++++++.. +.+...+..++..|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45789999999999998743 346688899999999999999999999999763 3368899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
|++.|++..+.. +.+..++..++..+...|++++|...++++++ +.|+..........+...|++++|+..++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999843 44578999999999999999999999999999 778777555555666778999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 886 KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL---GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 886 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..+. +...+ .++..+...++.++|...++++++..+.. ++.++..++.+|...|++++|...++++++. .|+.
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 6544 44444 47777888999999999999998776542 2678999999999999999999999999864 5643
Q ss_pred hhHHHHHhhhhcCCChhhHHHHH
Q 001966 963 ISLADIVKGENSGVDLDESKDLM 985 (989)
Q Consensus 963 ~~~~~l~~~~~~~g~~~~a~~~~ 985 (989)
. ......+...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22355566778888877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=150.17 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN 833 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 833 (989)
.+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 44444555555555555555555555432 2234555555555555566666666665555531 234455566666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +...+..++.++...|++++|+
T Consensus 103 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665 4443 335555666666666666666666666665443 5666666677777777777777
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
..++++++..|. ++.++..++.+|...|++++|.+.++++.+. .|+ ...+..+.
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 234 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHT
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHH
Confidence 777776666655 5666677777777777777777777766553 454 33344333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-14 Score=141.09 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
+...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455556666666666666666666666532 2245566666666666677777777776666532 334556667777
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 001966 831 GYNRM-GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY 908 (989)
Q Consensus 831 ~~~~~-g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 908 (989)
.+... |++++|...++++++.+..|+.. .+..++.++...|++++|++.++++++..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777633345433 6666777777777777777777777776544 677777777777778888
Q ss_pred HHHHHHHHHHHHCCC-ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 909 SEALRLLNEMGESGF-RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
++|...++++++..| . ++..+..++..+...|+.++|...++.+.+. .|+...
T Consensus 164 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH
Confidence 888888887777766 4 6667777777777778888777777777543 465433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-13 Score=140.98 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=197.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCK----VQNMEKAKQLFLEMQQRNLKPATITY 825 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 825 (989)
.+..++..++..+...|++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45678888999999999999999999999983 356788889999999 999999999999999864 77889
Q ss_pred HHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 826 RSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 826 ~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
..++..|.. .+++++|+..|++.++.+ +...+..++..+.. .+++++|++.++++.+.+ +..++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 999999999 999999999999999843 66788899999999 999999999999999875 6788999
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcccchhHHHHH
Q 001966 898 IIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFGWVSNSISLADIV 969 (989)
Q Consensus 898 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 969 (989)
++..|.. .+++++|+..++++.+.+ ++.++..++.+|.. .+++++|...++++.+.+ +...+..++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 9999998 999999999999999885 67889999999999 999999999999998763 367788899
Q ss_pred hhhhc----CCChhhHHHHHhhh
Q 001966 970 KGENS----GVDLDESKDLMKQT 988 (989)
Q Consensus 970 ~~~~~----~g~~~~a~~~~~~~ 988 (989)
..+.. .|++++|.+.+++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHH
Confidence 99988 99999999998763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-15 Score=148.84 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 716 LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 716 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
.....|..+...+...|++++|+..|+++++..+.+..++..++..+...|++++|+..++++.+.. +.+...+..++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3556788888899999999999999999999998889999999999999999999999999999763 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVM 874 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 874 (989)
.+...|++++|++.++++.+.. +.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998853 45677899999999999999999999999998 6675 457888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
+|++.++++++..+. +..++..++.++...|++++|...++++++..|+ ++.++..++......|
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhhcc
Confidence 999999999988655 7889999999999999999999999999999988 7887777665544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-14 Score=143.04 Aligned_cols=208 Identities=18% Similarity=0.080 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY 797 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 797 (989)
...+..++..+...|++++|++.|+++++..+.+..++..++..+...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455566666666667777777776666666666666677777777777777777777776542 22556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 875 (989)
...|++++|+++++++.+.+..| +...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776632334 355777778888888888888888888887 5564 4477778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
|...++++++..+. +...+..++..+...|++++|.+.++++++..|+ ++...
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 88888888877654 7778888888888888888888888888888766 55443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-15 Score=163.12 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=128.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CC
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN----TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR----GVP-LD 717 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 717 (989)
....+......+...|++++|...|+++++.... + ..++..+...+...|++++|...++++... +.+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555666666666666666666655211 2 234555666666666666666666655331 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC----hhhHHHHHHHHHHcCC--------------------HHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS----TLSFNTLIEFLCISNK--------------------LQEA 771 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~~A 771 (989)
..++..+...+...|++++|+..++++++..+ .+ ..++..++..+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33455555566666666666666666555422 11 2244555555555555 5555
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHhHH
Q 001966 772 HQLLDAMLEE----QVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN-LKPA----TITYRSLLNGYNRMGNRSEV 841 (989)
Q Consensus 772 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A 841 (989)
...+++.++. +..+ ...++..++..|...|++++|+..+++..+.. -.++ ..++..++..+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 5555544321 0000 11234444445555555555555555544320 0011 11444444555555555555
Q ss_pred HHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHH
Q 001966 842 FVVFEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYS 909 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 909 (989)
...++++++ +.|+ ..++..++.++...|++++|++.++++++.... .+ ..++..++.++...|+++
T Consensus 247 ~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 247 SEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 555555444 1111 113344444555555555555555554432111 01 234444455555555555
Q ss_pred HHHHHHHHHHH
Q 001966 910 EALRLLNEMGE 920 (989)
Q Consensus 910 ~A~~~~~~~~~ 920 (989)
+|...++++++
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-13 Score=137.72 Aligned_cols=213 Identities=10% Similarity=-0.011 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 716 LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 716 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
.+...+..++..+...|++++|++.++++++..+.+..++..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3566777788888888888888888888888888777888888888888888888888888888653 336677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 001966 796 QYCKV-QNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGN 872 (989)
Q Consensus 796 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 872 (989)
.+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|...++++++ ..|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCC
Confidence 88889 999999999998887322333 56788888999999999999999999988 6675 4478888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
+++|.+.++++++..+..+...+..++..+...|+.++|..+++.+.+..|+ ++.....
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~ 221 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 9999999999988765237888888888889999999999999998887766 6555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=160.59 Aligned_cols=265 Identities=17% Similarity=0.147 Sum_probs=168.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCChhhHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLEK------GLASTLSFNTL 758 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l 758 (989)
+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|+..++++++. .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344455555555555555555432 2222 24445555555555555555555555443 11233455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDTYTTLINQYCKVQN-----------------MEKAKQLFLEMQQR 816 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 816 (989)
+..|...|++++|...++++++. +..+ ...++..++..|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666665532 1011 23456666667777777 77777777665441
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 817 ----NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 817 ----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
+..+ ...++..++..+...|++++|...++++++ +.|+. ..+..++.++...|++++|++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1111 134677788888888888888888888877 33221 156677888888899999998888887
Q ss_pred hCCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 885 DKRMP-----ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 885 ~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.... ....++..++.++...|++++|...++++++..++. ...++..++.+|...|++++|.+.+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 64221 114677888888999999999999998887653221 24577889999999999999999998887
Q ss_pred hC
Q 001966 955 SF 956 (989)
Q Consensus 955 ~~ 956 (989)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-14 Score=135.24 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...|..++..|...|++++|++.|++..+.. +-+..++..++.+|...|++++|...++++.. ..|+.. .+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 56778889999999999999999999988843 34567888999999999999999999999988 667554 677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
..+...+++++|.+.++++.+..+. +..++..++.++.+.|++++|++.++++++..|. ++.++..+|.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999999988765 8889999999999999999999999999999888 8999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccc
Q 001966 945 YAAKVLECMASFGWVSNS 962 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~ 962 (989)
+|.+.++++++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999998764 5653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-11 Score=139.47 Aligned_cols=454 Identities=11% Similarity=0.044 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 001966 490 QEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGE---MQTAGRFF 566 (989)
Q Consensus 490 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 566 (989)
.+.+..|++....+. -|..+|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|. ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344555566655544 48889999999988889999999999999886 45567778888888888888 99999999
Q ss_pred HHHHHCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-CC-CHHHHHHHHHHHHh---------
Q 001966 567 NEMLNSG-LVPNDVIYTSIVDGYCKEGNI--------AEAISKFRCMLAR-GI-LP-EVQTYSVLINGLSK--------- 625 (989)
Q Consensus 567 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~p-~~~~~~~li~~~~~--------- 625 (989)
++.+... ..|++..|...+....+.++. +...++|+..+.. |. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988754 137788888877766665543 3344677665543 54 44 45677777765432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 001966 626 KLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705 (989)
Q Consensus 626 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 705 (989)
.++++.+..+|..++......-..+|..... +.+.-+...+.+++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHH
Confidence 3346677778877775311111222222211 11110000111111110 0122223333
Q ss_pred HHHHHH--CC----C------------CC----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCChh
Q 001966 706 FDEMTK--RG----V------------PL----D---GSVYNALLSGCCKEE-------KLEQALELFRDMLEKGLASTL 753 (989)
Q Consensus 706 ~~~~~~--~~----~------------~~----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~ 753 (989)
+.++.. .+ + |+ + ...|...+..-...+ ..+.+..+|++++...+....
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~ 344 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPE 344 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHH
Confidence 332211 00 0 10 0 134555554433322 134456788888888887888
Q ss_pred hHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC--
Q 001966 754 SFNTLIEFLCISNKLQEAH-QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN---------LKPA-- 821 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~-- 821 (989)
.|...+..+...|+.++|. ++|++.+.. ++.+...|...+...-..|++++|.++|+++.+.. -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 8888888888888888886 888888864 33466667777888888888888888888887531 0131
Q ss_pred ----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 001966 822 ----------TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFTYYVMIDAHCKE-GNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 822 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 889 (989)
..+|...+....+.|+.+.|..+|.++++. + .+....|...+....+. ++++.|.++|+.+++.-+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 236777777777888888999999888873 1 11233444444444444 4488899998888887433
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+...|...++.....|+.+.|..+|+++++..+++ ....|..++..-.+.|+.+.+.++.+++.+. .|+......
T Consensus 503 -~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~ 579 (679)
T 4e6h_A 503 -DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEE 579 (679)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHH
T ss_pred -chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 77777788888888888999999999888876632 3456777888888888888888888888765 566544444
Q ss_pred HHhhh
Q 001966 968 IVKGE 972 (989)
Q Consensus 968 l~~~~ 972 (989)
+.+-|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=159.87 Aligned_cols=215 Identities=11% Similarity=0.021 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL-QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
.+++++..+++.....+.+...+..++..+...|++ ++|+..|++.++.. +.+...|..++..|...|++++|++.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356777777776666666777777777777777777 88888777777653 2246677777777777778888887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCH
Q 001966 812 EMQQRNLKPATITYRSLLNGYNRM---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE--------GNV 873 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~--------g~~ 873 (989)
+..+ ..|+..++..++..+... |++++|+..|+++++ +.|+.. .|..++.++... |++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 7777 456667777777777777 777777777777777 666544 677777777777 777
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 874 MEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++|++.|+++++.++. .+..+|..++.+|...|++++|+..|+++++..|+ ++.++..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777776541 27777777777777777777777777777777776 67777777777777777777776654
Q ss_pred HH
Q 001966 952 CM 953 (989)
Q Consensus 952 ~~ 953 (989)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 33
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=159.57 Aligned_cols=303 Identities=16% Similarity=0.103 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------
Q 001966 680 EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKGL------ 749 (989)
Q Consensus 680 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 749 (989)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|+..+++++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456677788888999999999999999998863 334 35788889999999999999999999876421
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPN----HDTYTTLINQYCKVQN--------------------ME 804 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~ 804 (989)
....++..++..+...|++++|...+++.++... .++ ..++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345778889999999999999999999986411 112 3478888999999999 99
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHH
Q 001966 805 KAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDN----FTYYVMIDAHCKEGNVM 874 (989)
Q Consensus 805 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~----~~~~~l~~~~~~~g~~~ 874 (989)
+|++.+++..+. +..|. ..++..++..+...|++++|...++++++. ...++. .++..++.++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999988652 11222 347888999999999999999999999872 111221 26777889999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChh
Q 001966 875 EALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMD 944 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 944 (989)
+|+..++++++..+. .+ ..++..++.++...|++++|...++++++..+.. ...++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999865322 12 5678899999999999999999999998764331 1567889999999999999
Q ss_pred HHHHHHHHHHhCCCcccc-----hhHHHHHhhhhcCCChhhHHH
Q 001966 945 YAAKVLECMASFGWVSNS-----ISLADIVKGENSGVDLDESKD 983 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~ 983 (989)
+|.+.++++++..-.... ..+..++..+...|+...+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 999999999875222121 245667777777776655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=160.33 Aligned_cols=270 Identities=10% Similarity=0.011 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLAST----LSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDT 789 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~ 789 (989)
..+..+...+...|++++|+..|+++++..+.+. .++..++..+...|++++|...+++.++. +..| ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455667788899999999999999999988654 47888999999999999999999988743 1112 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HhHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQR----NLKP-ATITYRSLLNGYNRMGN-----------------RSEVFVVFEE 847 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 847 (989)
+..+...|...|++++|+..+++..+. +-.| ...++..++..|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999988763 1122 24578899999999999 9999999998
Q ss_pred HHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 848 MLGK----GIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 848 ~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
.++. +..|.. ..+..++.++...|++++|++.++++++.... .+ ..++..++.++...|++++|+..+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8761 112222 26777889999999999999999999875221 12 23788999999999999999999999
Q ss_pred HHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 918 MGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 918 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+++..+.. ...++..++.+|...|++++|...++++++.. ..+. ...+..++..+...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 98765431 25678999999999999999999999987631 1111 35788999999999999999999886
Q ss_pred h
Q 001966 988 T 988 (989)
Q Consensus 988 ~ 988 (989)
.
T Consensus 369 a 369 (411)
T 4a1s_A 369 H 369 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=161.41 Aligned_cols=213 Identities=11% Similarity=0.022 Sum_probs=158.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL-EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLD 776 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 776 (989)
.++++++.+++.... .+.+...+..+...+...|++ ++|++.|+++++..|.+..++..++..|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466666777766554 245677777777778788888 888888888888777777778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHh
Q 001966 777 AMLEEQVNPNHDTYTTLINQYCKV---------QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM--------GNRS 839 (989)
Q Consensus 777 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 839 (989)
+.++. .|+...+..+...|... |++++|++.|++..+.. +.+...|..++.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 87765 45567777777777777 88888888888877742 33466777777777777 7788
Q ss_pred HHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEP---D-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+|+..|+++++ +.| + ...+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|+..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877 666 3 346777778888888888888888888777655 6777777888888888777777765
Q ss_pred HH
Q 001966 916 NE 917 (989)
Q Consensus 916 ~~ 917 (989)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-14 Score=151.58 Aligned_cols=265 Identities=18% Similarity=0.158 Sum_probs=169.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCChhhHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKG------LASTLSFNTL 758 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l 758 (989)
....+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|++.+++++... +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444555555555555555555542 222 2344555555556666666666665554331 1223355566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQV-NPN----HDTYTTLINQYCKVQN--------------------MEKAKQLFLEM 813 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 813 (989)
+..+...|++++|...+++.++... .++ ..++..++..+...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666666777777766666553200 111 2356666667777777 77777777665
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 814 QQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---D----NFTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 814 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
... +..+. ..++..++..+...|++++|...++++++ +.| + ..++..++..+...|++++|.+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 431 11111 34677788888888888888888888876 221 1 1156677788888899999999888
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 882 LIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 882 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++++.... .+ ..++..++.++...|++++|...++++++..+.. ...++..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 88754211 11 5567788888999999999999998887654321 14577889999999999999999999
Q ss_pred HHHhC
Q 001966 952 CMASF 956 (989)
Q Consensus 952 ~~~~~ 956 (989)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-13 Score=139.54 Aligned_cols=220 Identities=12% Similarity=0.021 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 735 EQALELFRDMLEKGLASTLSFNTLIEFLCI-------SNKL-------QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
++|+..|++++...|.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777777777777777777776653 4664 78888888887631122556777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH-hcCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPA-TI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHC-KEGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~-~~g~~~~A 876 (989)
|++++|.++|++..+ +.|+ .. +|..++..+.+.|++++|..+|+++++ ..|+.. .|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877 4454 33 778888888888888888888888887 455433 4433333322 25888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES---GFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.++|+++++..+. +...|..++..+.+.|++++|+.+|+++++. .|+.....|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877555 7788888888888888888888888888875 22224667777888888888888888888887
Q ss_pred HhCCCccc
Q 001966 954 ASFGWVSN 961 (989)
Q Consensus 954 ~~~~~~p~ 961 (989)
.+. .|+
T Consensus 268 ~~~--~p~ 273 (308)
T 2ond_A 268 FTA--FRE 273 (308)
T ss_dssp HHH--TTT
T ss_pred HHH--ccc
Confidence 654 454
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-11 Score=136.41 Aligned_cols=443 Identities=10% Similarity=0.057 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHH
Q 001966 455 RQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKR---MDEARIYL 531 (989)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 531 (989)
.+....+++.+..+ +-|..+|..++....+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34455566666554 568999999999999999999999999999986 44467788888888888888 99999999
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHhHHHHHHHHH---------h
Q 001966 532 VEMLRRGL-KPNIHSFRAFILGYCMAGEM--------QTAGRFFNEMLN-SGL-VP-NDVIYTSIVDGYC---------K 590 (989)
Q Consensus 532 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 590 (989)
++.+.... .|++..|...+.-....++. +...++|+.++. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99998641 37888888877766665543 334578887664 455 44 3467887776544 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQL 670 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 670 (989)
.++++.+..+|+.++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34578889999998853111122334332221111111 111111111 11123334444
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH
Q 001966 671 YEEMCEK--GVE---------------P-----N---TLTYNVLIDGFCKAG-------DLTEPFQLFDEMTKRGVPLDG 718 (989)
Q Consensus 671 ~~~~~~~--~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~ 718 (989)
+.++... ++. | + ...|...+.---..+ ..+.+..+|++++.. ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332210 110 1 0 123444443222211 123355678888876 57789
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC--
Q 001966 719 SVYNALLSGCCKEEKLEQAL-ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ---------VNPN-- 786 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~-- 786 (989)
..|...+..+...|+.++|. ++|++++...|.+...+...+......|++++|..+|++++... -.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999998999999997 99999999888777778888999999999999999999988631 0132
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCC
Q 001966 787 ----------HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-NRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 787 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 855 (989)
...|...+....+.|..+.|..+|.+..+.-.......|...+..-.+.| +.+.|..+|+..++ ..|
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk--~~p 501 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK--YFA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH--HHT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCC
Confidence 24688888888889999999999999987511223445544444444444 58999999999999 566
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.. .+...++.....|+.+.|..+|++++...+++ ....|...+..-.+.|+.+.+.++.+++.+..|+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555 55567777788899999999999999875432 4567888888889999999999999999999877
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=132.24 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 820 PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 820 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.+..+|..++..|...|++++|+..|+++++ +.|+.. ++..++.++.+.|++++|+..++++....+. +..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 4577899999999999999999999999999 889665 8888999999999999999999999988766 88999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+..+...+++++|...+.++.+..|. +..++..+|.+|...|++++|++.++++++. .|+ ...+..++..+...|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCC
Confidence 99999999999999999999999988 8999999999999999999999999999875 674 7889999999999999
Q ss_pred hhhHHHHHhhh
Q 001966 978 LDESKDLMKQT 988 (989)
Q Consensus 978 ~~~a~~~~~~~ 988 (989)
+++|++.+++.
T Consensus 157 ~~~A~~~~~~a 167 (184)
T 3vtx_A 157 RDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999863
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=151.52 Aligned_cols=270 Identities=13% Similarity=0.041 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLAS----TLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDT 789 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~ 789 (989)
..+......+...|++++|+..|+++++..+.+ ...+..++..+...|++++|...+++.++. +..| ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345566778889999999999999999988755 357788999999999999999999987642 1111 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA----TITYRSLLNGYNRMGN--------------------RSEVFVV 844 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 844 (989)
+..++..+...|++++|+..+++..+... .++ ..++..++..+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88889999999999999999998765310 112 3478889999999999 9999999
Q ss_pred HHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHH
Q 001966 845 FEEMLGK----GIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 845 ~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
+++.++. +..|.. ..+..++..+...|++++|++.++++++.... ++ ..++..++.++...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988761 112222 26777889999999999999999999864211 12 33788999999999999999999
Q ss_pred HHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCChhhHHHH
Q 001966 915 LNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVDLDESKDL 984 (989)
Q Consensus 915 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 984 (989)
++++++..+.. ...++..++.+|...|++++|...++++++.. -.+. ...+..++..+...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99998654331 16678899999999999999999999987531 1111 34778999999999999999999
Q ss_pred Hhhh
Q 001966 985 MKQT 988 (989)
Q Consensus 985 ~~~~ 988 (989)
+++.
T Consensus 326 ~~~a 329 (338)
T 3ro2_A 326 AEKH 329 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-13 Score=145.35 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=167.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---C-CHHHHH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGL------ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVN---P-NHDTYT 791 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~-~~~~~~ 791 (989)
....+...|++++|+..++++++... ....++..++..|...|++++|+..+++.++. ... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667778888888888888876411 13356778888888888888888888887742 111 1 135677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCHH-HHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK----GIEPDNF-TYY 861 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~ 861 (989)
.++..|...|++++|++.|++..+. +..+. ..++..++.+|...|++++|...++++++. +..|... ++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999988887652 11111 247888889999999999999999988871 2224443 777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRM----PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.++.++...|++++|.+.++++++... +.....+..++..+...|+ +++|+.++++. ........++..+|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 888999999999999999998876411 1122335678888888888 78888888775 11112355678899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+|...|++++|...++++.+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=158.07 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
+...|+.++..|.+.|++++|++.|++.++ +.|+ ..+|..++.+|.+.|++++|+..|+++++ +.|+.. .|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 457899999999999999999999999998 4555 77899999999999999999999999999 889765 89999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+.++.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|+..|+++++..|+ ++.++..|+.+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999998876 8999999999999999999999999999999988 899999999999999999
Q ss_pred hHHHHHHHHHHhCCCccc
Q 001966 944 DYAAKVLECMASFGWVSN 961 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~ 961 (989)
++|.+.++++++. .|+
T Consensus 162 ~~A~~~~~kal~l--~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSI--VAD 177 (723)
T ss_dssp TTHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHh--Chh
Confidence 9999999998763 454
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=132.86 Aligned_cols=219 Identities=10% Similarity=0.099 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-cCCCChhhHHHHHHHHHH
Q 001966 700 TEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-------EEKL-------EQALELFRDMLE-KGLASTLSFNTLIEFLCI 764 (989)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 764 (989)
++|...|+++... .|.+...|..++..+.. .|++ ++|..+|+++++ ..|.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677788887775 36677788877777653 4775 899999999998 577778889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHH
Q 001966 765 SNKLQEAHQLLDAMLEEQVNP-NHD-TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN-RMGNRSEV 841 (989)
Q Consensus 765 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 841 (989)
.|++++|..+|+++++. .| +.. .|..++..+.+.|++++|+.+|++..+.. +++...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999975 34 333 78889999999999999999999998853 344555655444432 36999999
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKR-MPI--SAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
..+|+++++ ..|+.. .|..++..+.+.|++++|..+|+++++.. .+| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998 677554 78888899999999999999999999862 232 578899999999999999999999999
Q ss_pred HHHCCCc
Q 001966 918 MGESGFR 924 (989)
Q Consensus 918 ~~~~~~~ 924 (989)
+++..|+
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9998876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=143.01 Aligned_cols=228 Identities=7% Similarity=0.008 Sum_probs=181.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHH
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPN----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL---KP-ATIT 824 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~~ 824 (989)
...+..+...|++++|+..+++..+.- ..++ ..++..++..|...|++++|+..+++..+. .. .+ ...+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 346778889999999999999998531 1122 367888999999999999999999998763 11 11 1357
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DN----FTYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA 892 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 892 (989)
+..++..|...|++++|...++++++ +.| +. .++..++.++...|++++|++.++++++ ...+...
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYS--MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 88999999999999999999999987 222 22 2788899999999999999999999998 3313357
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---c-CHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccc-chh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFR---L-GFASCRTVANDFLREGV---MDYAAKVLECMASFGWVSN-SIS 964 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~ 964 (989)
.++..++.++.+.|++++|...++++++..+. + ....+..++.+|...|+ +++|...+++. +..|+ ...
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 78999999999999999999999999876322 1 23336779999999999 67777777655 34554 567
Q ss_pred HHHHHhhhhcCCChhhHHHHHhhh
Q 001966 965 LADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 965 ~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..++..+...|++++|...+++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999999998763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=147.16 Aligned_cols=238 Identities=17% Similarity=0.130 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEK--------GLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE------Q 782 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 782 (989)
+..++..+...+...|++++|+.+++++++. .+....++..++..+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666676666666666652 2234455666777777777777777777766642 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 001966 783 VNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK--- 851 (989)
Q Consensus 783 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 851 (989)
..| ....+..++..|...|++++|++.+++..+. +..| ...++..++..+...|++++|..+++++++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 3456677777778888888888888777653 1122 2446777888888888888888888888772
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CC-------CHHHHHHHHHHHHccCCHHHHHH
Q 001966 852 ---GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM-------PI-------SAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 852 ---g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
+..|... ++..++.++...|++++|++.++++++..+ .+ ....+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1144333 667778888888888888888888875310 00 11223334444556667777777
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++++....+. .+.++..++.+|...|++++|.+.++++++
T Consensus 266 ~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88887776655 778889999999999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=154.93 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=138.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSL 828 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 828 (989)
.+..+++.|+..+.+.|++++|++.|++.++.. +-+..+|..++.+|.+.|++++|++.|++.++ +.|+ ..+|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456678888888888899999999888888753 22567888888888888899999988888887 3454 6688888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.++...|++++|++.|+++++ +.|+.. .+..++.++.+.|++++|++.|+++++.++. +..+|..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 8888888899999999988888 788655 7888888888888999999999888888766 78888888888888899
Q ss_pred HHHHHHHHHHHHHCCC
Q 001966 908 YSEALRLLNEMGESGF 923 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~ 923 (989)
+++|.+.++++++..+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888888877653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=124.70 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=138.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSL 828 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 828 (989)
.++..+...+..+...|++++|+..|++.++....++...+..++.++...|++++|++.|++..+. .|+ ..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456777777778888888888888888776543356666666777778888888888888887773 343 5577777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-SAEAYKAII 899 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 899 (989)
+.++...|++++|+..++++++ +.|+.. .|..++..+...|++++|++.++++++.++.. +..+|..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7888888888888888888877 566533 35666677777788888888888887754210 246677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHHHHHh
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLADIVK 970 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 970 (989)
.++...| ...++++....+. +...+ ........|.+++|...++++++. .|+. .....+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKY--ASEKAKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHH--HHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 7775544 3344555554433 33333 223344556679999999999874 6864 44444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=123.00 Aligned_cols=168 Identities=13% Similarity=-0.028 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDA 866 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 866 (989)
..+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++++ ..|+ ...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 456677778888888888888888887642 44567888888888899999999999999888 5664 4477788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHH
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 946 (989)
+...|++++|.+.++++.+..+. +...+..++.++...|++++|...++++++..|. ++.++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887655 7888999999999999999999999999988877 788999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 001966 947 AKVLECMASFGWVSNS 962 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~~ 962 (989)
.+.++++.+. .|+.
T Consensus 164 ~~~~~~~~~~--~~~~ 177 (186)
T 3as5_A 164 LPHFKKANEL--DEGA 177 (186)
T ss_dssp HHHHHHHHHH--HHCC
T ss_pred HHHHHHHHHc--CCCc
Confidence 9999988764 4543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=140.71 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=174.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEE-------QVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------N 817 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 817 (989)
...++..++..+...|++++|..+++++++. ........+..++..|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888999999999999999999999862 12224567888999999999999999999998763 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 001966 818 LKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK--- 886 (989)
Q Consensus 818 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 886 (989)
..| ...++..++..+...|++++|...++++++. +..|... .+..++.++...|++++|+++++++++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123 3567889999999999999999999999872 2234333 6778889999999999999999999875
Q ss_pred ---C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-------c-------CHHhHHHHHHHHHhcCChhHHHH
Q 001966 887 ---R-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-------L-------GFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 887 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-------~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
+ .+....++..++.++...|++++|...++++++..++ + ....+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1113567889999999999999999999999875321 0 12334445555666677778888
Q ss_pred HHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 949 VLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 949 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.++.+... .|+ ...+..++..+...|++++|.+.+++.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88877543 554 678899999999999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=123.05 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
+.|+..+......+...|++++|+..|+++++..+ ++...+..++.++...|++++|+..+++.++... .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 34678899999999999999999999999999998 8888888899999999999999999999998632 256789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HH-HHHHH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPAT-------ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NF-TYYVM 863 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~-~~~~l 863 (989)
+..|...|++++|++.|++..+.. +.+. .+|..++..+...|++++|+..|+++++ +.|+ .. .+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 999999999999999999999842 3334 4688889999999999999999999999 7888 55 77788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
+.++... +...++++...+.. +...+... .....+.+++|+..++++++..|+ ++.+...++.+.
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHH
Confidence 8888654 44556666665433 44444433 345667899999999999999988 787777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=131.46 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=154.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC---CC-CHHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGL--A----STLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QV---NP-NHDTY 790 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~~-~~~~~ 790 (989)
.....+...|++++|+..|+++.+... + ...++..++..|...|++++|...+++.++. .. .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888888776422 2 2346677778888888888888888877642 11 11 13466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCC-HHHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQR----NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK---GIEPD-NFTYY 861 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~-~~~~~ 861 (989)
+.++..|...|++++|++.|++..+. +.++ ...++..++.+|...|++++|...++++++. ...|. ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 77778888888888888888777652 1111 1346777888888888888888888887761 01233 33677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRM----PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.++.++.+.|++++|...++++++... +.....+..+...+...|+ +++|+..+++. .........+..+|
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Confidence 777888888888888888888876421 1123345566666777777 77777777762 11111344567788
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-10 Score=126.02 Aligned_cols=264 Identities=12% Similarity=-0.007 Sum_probs=156.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCh----hhHHHHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLEKGL--AST----LSFNTLIEF 761 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~l~~~ 761 (989)
.+...|++++|...+++........+. .++..+...+...|++++|...+++.+...+ .+. .++..++..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344556666666666665554211122 1344455556666667766666666655322 111 234556666
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHH
Q 001966 762 LCISNKLQEAHQLLDAMLEE----QVN--P-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL---KP-ATITYRSLLN 830 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~ 830 (989)
+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++..+... .+ ...++..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77777777777777766532 111 2 123455566777777778887777777665211 11 2345667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYY-----VMIDAHCKEGNVMEALKLKDLIFDKRMPI---SAEAYKAIIKA 901 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~ 901 (989)
.+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...++++.+..+.+ ....+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 777788888888888777652111111 1111 22344667788888888887776643321 12345667777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCc----cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 902 LCKREEYSEALRLLNEMGESGFR----LG-FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+...|++++|...++++++..+. ++ ..++..++.++...|++++|...++++.+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888777654221 11 23566777888888888888888777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=126.47 Aligned_cols=230 Identities=8% Similarity=-0.012 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHH
Q 001966 755 FNTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPN----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL---KP-ATI 823 (989)
Q Consensus 755 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~ 823 (989)
+...+..+...|++++|+..+++..+.. ..++ ..++..++..|...|++++|+..+++..+. .. .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4456677889999999999999998531 1122 357888999999999999999999988762 11 11 145
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGK----GIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISAE 893 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 893 (989)
++..++.+|...|++++|...++++++. +..+. ..++..++.++...|++++|++.++++++ ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 7889999999999999999999999872 11111 12677889999999999999999999998 5544 478
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---c-CHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccc-chhH
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFR---L-GFASCRTVANDFLREGV---MDYAAKVLECMASFGWVSN-SISL 965 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~ 965 (989)
++..++.++.+.|++++|...++++++.... + ....+..++..|...|+ +.+|...+++ .+..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHH
Confidence 8999999999999999999999999886432 1 23456778888889999 7777777775 333454 5677
Q ss_pred HHHHhhhhcCCChhhHHHHHhhh
Q 001966 966 ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 966 ~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..+...|++++|.+.+++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999998864
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-11 Score=128.18 Aligned_cols=266 Identities=12% Similarity=-0.017 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHH
Q 001966 722 NALLSGCCKEEKLEQALELFRDMLEKGLA-STL----SFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPNH----DTYT 791 (989)
Q Consensus 722 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 791 (989)
......+...|++++|...+++.+...+. +.. ++..++..+...|++++|...+++...... .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455667899999999999999987663 222 566778889999999999999998874211 1122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCC-C-HHHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQR----NLK--PA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG--IEP-D-NFTY 860 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p-~-~~~~ 860 (989)
.+...+...|++++|+..+++..+. +.. |. ...+..++..+...|++++|...+++.++.. ..+ . ..++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999988763 222 32 3467788999999999999999999998821 111 1 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCcc---CHHhHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI-S-AEAYK----AIIKALCKREEYSEALRLLNEMGESGFRL---GFASCR 931 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 931 (989)
..++..+...|++++|...++++.+....+ . ..... ..+..+...|++++|...++++.+..+.+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 778899999999999999999998642121 1 22211 33455789999999999999988765432 133567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCcccc-hhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASF----GWVSNS-ISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
.++.++...|++++|...++++.+. |..++. ..+..++..+...|+.++|.+.+++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8999999999999999999988653 222232 3677888889999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=127.10 Aligned_cols=221 Identities=11% Similarity=0.008 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 001966 734 LEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNPN-HDTYTTLINQYCKVQNMEKAKQ 808 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 808 (989)
+++|...|+++ +..|...|++++|...|++.++. +..++ ..+|+.++.+|...|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666555 23455666777777666666532 11111 3466777777777778888877
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHH
Q 001966 809 LFLEMQQR----NLKP-ATITYRSLLNGYNRM-GNRSEVFVVFEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 809 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~ 875 (989)
.|++..+. |-.+ ...++..++..|... |++++|+..|+++++ +.|+ ..++..++..+.+.|++++
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77776652 1000 134678888888886 999999999999988 4442 2357778899999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC----HHhHHHHHHHHH--hcCCh
Q 001966 876 ALKLKDLIFDKRMPISA------EAYKAIIKALCKREEYSEALRLLNEMGESGFRLG----FASCRTVANDFL--REGVM 943 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~ 943 (989)
|+..++++++..+.... ..|..++.++...|++++|+..++++++..|... ...+..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999987554222 2577888899999999999999999888766521 113445666664 45778
Q ss_pred hHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 944 DYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
++|.+.|+++.. +.|+ ...+..+-..+
T Consensus 257 ~~A~~~~~~~~~--l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 257 SEHCKEFDNFMR--LDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHTTSSC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCc--cHHHHHHHHHHHHHHh
Confidence 888888877633 4564 33444444333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=117.30 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|...++++++ ..|+ ...+..++..+...|++++|.+.++++++..+. +..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34677888999999999999999999988 6664 447888899999999999999999999988655 8899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLD 979 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 979 (989)
.+...|++++|...++++++..|. ++.++..++.++...|++++|...++++.+. .| +...+..++..+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999877 8999999999999999999999999999875 46 4778999999999999999
Q ss_pred hHHHHHhhh
Q 001966 980 ESKDLMKQT 988 (989)
Q Consensus 980 ~a~~~~~~~ 988 (989)
+|.+.+++.
T Consensus 162 ~A~~~~~~~ 170 (186)
T 3as5_A 162 EALPHFKKA 170 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-10 Score=112.84 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
|+..+++.+..+.++..++..++.++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666777766655555555567777777777888887777777654431 2456666777777777888888888877776
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 816 RNLKP-----ATITYRSLLNG--YNRMG--NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 816 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
..| +..+...|+.+ ....| ++++|..+|+++.+ ..|+..+...+..++...|++++|.+.++.+.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455 24444555544 33334 77777777777766 4565333333344677777777777777766543
Q ss_pred ----------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 887 ----------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 887 ----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
++. ++.++..++......|+ +|.++++++.+..|+ ++.+. ++.+....|+++.
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~-----------d~~~k~~~Fd~~~ 303 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK-----------HHQEIDAKFDELV 303 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH-----------HHHHHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH-----------HHHHHHHHHHHHH
Confidence 122 56666566656666666 777777777777766 66554 4445555555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=117.80 Aligned_cols=144 Identities=10% Similarity=-0.073 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
|+..+...|++++|+..+++.+. ..|+.. .+..++.+|.+.|++++|++.++++++.++. +..+|..++.++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566777777777777766 556544 5666777777778888888888887777655 7777778888888888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV-LECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
++++|+..|+++++..|+ ++.++..+|.+|.+.|++++|.+. ++++++. .|+ +..+......+..+|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 888888888888777777 777777888888888777665544 4666653 675 4455555555555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-11 Score=124.34 Aligned_cols=229 Identities=16% Similarity=0.097 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCIS---NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
+|.+++++..+.-......+ . +.+. +++++|...|++. +..|...|++++|++.|++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 45666666665543221112 1 1222 2488888888776 4467789999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhc-CCHHHHHHH
Q 001966 813 MQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------NFTYYVMIDAHCKE-GNVMEALKL 879 (989)
Q Consensus 813 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~ 879 (989)
..+. +-+++ ..+|..++.+|...|++++|+..|+++++ +.|+ ..++..++.++... |++++|++.
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 8663 22222 46899999999999999999999999988 4332 23678889999996 999999999
Q ss_pred HHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH------HhHHHHHHHHHhcCChhHHHH
Q 001966 880 KDLIFDKRMPI-S----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF------ASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 880 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 948 (989)
|+++++..+.. + ..++..++..+.+.|++++|+..++++++..++... ..+..++.++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999763321 1 457889999999999999999999999998776322 157889999999999999999
Q ss_pred HHHHHHhCCCcccch------hHHHHHhhhh--cCCChhhHHHHHhhh
Q 001966 949 VLECMASFGWVSNSI------SLADIVKGEN--SGVDLDESKDLMKQT 988 (989)
Q Consensus 949 ~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~ 988 (989)
.++++++ +.|+.. .+..+...+. ..+++++|.+.++++
T Consensus 221 ~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999865 466521 2344555553 567888998888654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-10 Score=116.10 Aligned_cols=230 Identities=7% Similarity=-0.032 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 001966 734 LEQALELFRDMLEKGLASTLSFNTLIEFLCISN--KLQEAHQLLDAMLEEQVNPNHDTYTTLINQY----CKV---QNME 804 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 804 (989)
.++|+++++.++..+|....+|+.-...+...| +++++++.++.++....+ +..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 457788888888888777777777777777777 788888888888765322 344555444444 444 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC------HHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS--EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN------VME 875 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~------~~~ 875 (989)
+++++++++.+.. +-+..+|..-...+.+.|.++ ++++.++++++ .+|.+. +|.....++...|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999988853 556778888888888888888 99999999998 777544 78877777777776 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHCC---CccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS-EALRLLNEMGESG---FRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++++++++..++. |..+|..+...+.+.|+.. ++..+.+++.+.+ +. ++.++..++++|.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999998877 8999999999998888744 4556777766654 44 78889999999999999999999999
Q ss_pred HHHhCCCccc-chhHHHHHh
Q 001966 952 CMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 952 ~~~~~~~~p~-~~~~~~l~~ 970 (989)
++.+. +.|- ...|...++
T Consensus 283 ~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHT-TCGGGHHHHHHHHH
T ss_pred HHHhc-cChHHHHHHHHHHh
Confidence 98642 5674 444544433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-11 Score=123.44 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=113.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN---HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA-TIT 824 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 824 (989)
.+...+..++..+.+.|++++|+..|+++++.... + ...+..++.+|.+.|++++|+..|++..+... .|. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34445555555555666666666666665543211 1 34455555555555666666665555555210 011 234
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 825 YRSLLNGYNR--------MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 825 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+..++.++.. .|++++|+..|+++++ ..|+.. ....+... ..+.. . ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~--------------~~~~~---~-~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKI--------------RELRA---K-LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHH--------------HHHHH---H-HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHH--------------HHHHH---H-HHHHH
Confidence 4555555555 5555555555555555 344332 11111000 00000 0 01113
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCcccch
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLRE----------GVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
..++.+|.+.|++++|+..++++++..|+. .+.++..++.+|... |++++|...++++++. .|+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 667778888888888888888888776552 245677888888766 7778888888887764 56542
Q ss_pred ----hHHHHHhhhhcCCChhhHH
Q 001966 964 ----SLADIVKGENSGVDLDESK 982 (989)
Q Consensus 964 ----~~~~l~~~~~~~g~~~~a~ 982 (989)
....+...+...|+.+++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=126.06 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=135.6
Q ss_pred hcCCHHHHHHHHHHHHHc-------C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEK-------G-LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE------QVNP-NHDTYTTLI 794 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~ 794 (989)
..|++++|+.++++.++. . +....++..++..+...|++++|+..++++++. +..| ...++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666666552 2 234556777888888888888888888877743 1122 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HH
Q 001966 795 NQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TY 860 (989)
Q Consensus 795 ~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~ 860 (989)
..|...|++++|++.+++..+. ...| ...++..++..+...|++++|...++++++. +..|+.. ++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7788888888888888877663 1012 2456777777777888888888888877762 1134333 56
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHccCC------HHHHHHHHHHHHHCCCccC
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKR--------MPISAEAYKAIIKALCKREE------YSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~ 926 (989)
..++.++...|++++|+++++++++.. .......|..+...+...+. +.++...++......+. .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-V 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-H
Confidence 667777777788888888777776530 11122334444444433332 33333333322222222 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++..++.+|...|++++|.+.++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777778788888888777777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-12 Score=116.83 Aligned_cols=144 Identities=10% Similarity=-0.055 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
|+..+...|++++|+..+++... ..|+ ...+..++..|.+.|++++|+..|+++++ +.|+.. +|..++.++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 45566778899999999998876 3444 44677899999999999999999999999 888665 888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRL-LNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
|++++|+..|+++++.+|. +..+|..++.+|.+.|++++|.+. ++++++..|+ ++.+|...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999999999999998876 899999999999999999877665 5899999988 89999999999988886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-11 Score=116.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
.++.++...|++++|+..|+++++ +.|+.. .+..++.++...|++++|++.|+++++.+|. +..+|..++.+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 388899999999999999999999 788655 8888999999999999999999999998866 889999999998776
Q ss_pred CC--HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 906 EE--YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 906 g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
|+ .+++...++++.. +.|...++..++.++...|++++|+..|+++++ +.|+......+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 64 4566677776543 334455677888899999999999999999965 4787655544444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=125.78 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=159.3
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 001966 764 ISNKLQEAHQLLDAMLE-------EQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLL 829 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~ 829 (989)
..|++++|+..+++.++ ...+....++..++..|...|++++|+..+++..+. +-.| ...++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666666553 111224567888999999999999999999998763 1123 355789999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHH
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK-----R--MPISAEAY 895 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~ 895 (989)
..+...|++++|...++++++. ...|+.. ++..++.++...|++++|++.++++++. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999872 1134433 7788899999999999999999999875 1 11145678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCc--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHH---hCC-Cccc-c
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFR--------LGFASCRTVANDFLREGVMDYAAKVLECMA---SFG-WVSN-S 962 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~p~-~ 962 (989)
..++.++...|++++|+..++++++..+. .....+..++..+...+....+....+... ..+ ..|+ .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999999875211 134456666666666555444433222111 111 1233 5
Q ss_pred hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 963 ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 963 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..+..++..+...|++++|.+.+++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=142.00 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=149.6
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 763 CISNKLQEAHQLLDAML--------EEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 834 (989)
...|++++|++.+++.+ +.. +.+...+..++..+...|++++|++.|++..+.+ +.+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 3356788889999999999999999999999842 4457789999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 835 MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
.|++++|+..|+++++ +.|+.. .+..++.++.+.|++++ ++.|+++++.++. +..+|..++.++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999 888655 78889999999999999 9999999998876 88999999999999999999999
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.|+++++..|. +..++..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999887 78899999999988776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=119.08 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPN-HDT 789 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~ 789 (989)
+.+...+..+...+.+.|++++|+..|+++++..|.+ ..++..++.++...|++++|+..|+++++... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4567788888999999999999999999999998866 77889999999999999999999999997532 222 466
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 001966 790 YTTLINQYCK--------VQNMEKAKQLFLEMQQRNLKPAT-ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY 860 (989)
Q Consensus 790 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 860 (989)
+..++.++.. .|++++|+..|+++.+. .|+. .....+.. +..+.. --...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~----~~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHH----HHHHHH
Confidence 7788888988 99999999999999984 4542 22222211 111111 001236
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCccCH-
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKR----------EEYSEALRLLNEMGESGFRLGF- 927 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~- 927 (989)
..++.++.+.|++++|+..++++++..+.. ...++..++.+|... |++++|+..++++++..|+ ++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-SPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT-CTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC-ChH
Confidence 677888999999999999999998865432 356888888888866 8899999999999998877 43
Q ss_pred --HhHHHHHHHHHhcCChhHH
Q 001966 928 --ASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 928 --~~~~~l~~~~~~~g~~~~A 946 (989)
.+...+..++...|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 3445566666555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=117.07 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYV----------------MIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
.+..+...|++++|+..|+++++ ..|+.. .+.. ++.++.+.|++++|+..++++++.+|.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 34444555555555555555555 455433 3444 889999999999999999999998876
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCcccchhHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM--DYAAKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l 968 (989)
+..+|..++.++...|++++|+..|+++++..|+ ++.++..+|.+|...|+. +.+...++++.. ..|....++..
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 8999999999999999999999999999999998 999999999999887654 456666666642 23334466778
Q ss_pred HhhhhcCCChhhHHHHHhhh
Q 001966 969 VKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 969 ~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..+...|++++|+..+++.
T Consensus 164 g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888899999999999874
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=114.17 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-PN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT----ITY 825 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 825 (989)
...+..++..+...|++++|+..|+++++.... |. ...+..++.+|.+.|++++|+..|+++.+. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 345566667777777777777777777754222 11 345666777777777777777777777763 2331 244
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------------
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE------------ 893 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------ 893 (989)
..++.++...|.. .+ ..+..+...+...|++++|+..|+++++..|. +..
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHH
Confidence 5555555432100 00 00001111112234444444444444443322 111
Q ss_pred -----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 894 -----AYKAIIKALCKREEYSEALRLLNEMGESGFRLGF---ASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 894 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
....++..|.+.|++++|+..++++++..|+ ++ .++..++.+|.+.|++++|.+.++.+... .|+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCC
Confidence 2246788899999999999999999998876 43 67899999999999999999999988765 454
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-09 Score=108.95 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=189.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCChhhHHHHHHHH----HHc---CCH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--KLEQALELFRDMLEKGLASTLSFNTLIEFL----CIS---NKL 768 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 768 (989)
..++|+++++.++..+ |-+..+|+.-...+...| ++++++++++.++..+|.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4468999999988874 667888888888888888 999999999999999998888888877776 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HhH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME--KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN------RSE 840 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 840 (989)
++++.+++++++.. +.+..+|+.-...+.+.|+++ +++++++++.+.+ +-|..+|+.-...+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 99999999999764 337788888888888889888 9999999999854 5567788888888888777 899
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 841 VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME-ALKLKDLIFDKR--MPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 841 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
+++.+++++. ..|++. .|+.+..++.+.|+..+ +..+.+++++.+ ...++.++..+++++.+.|+.++|+++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999 888655 88888888888888544 556777777654 12388899999999999999999999999
Q ss_pred HHHH-CCCccCHHhHHHHHH
Q 001966 917 EMGE-SGFRLGFASCRTVAN 935 (989)
Q Consensus 917 ~~~~-~~~~~~~~~~~~l~~ 935 (989)
.+.+ .+|- ....|...+.
T Consensus 283 ~l~~~~Dpi-r~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPI-RSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGG-GHHHHHHHHH
T ss_pred HHHhccChH-HHHHHHHHHh
Confidence 9987 4654 5666655544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-11 Score=139.23 Aligned_cols=188 Identities=12% Similarity=0.001 Sum_probs=157.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 729 CKEEKLEQALELFRDML--------EKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 729 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
...|++++|++.+++++ +..+.+...+..++..+...|++++|+..++++++.. +.+...|..++.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999999 7778888899999999999999999999999999753 23678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 879 (989)
|++++|++.|++..+.. +.+...|..++.++...|++++ +..|+++++ +.|+.. .+..++.++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999842 3357789999999999999999 999999999 888665 888999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCC
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEY-----SEALRLLNEMGESG 922 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~ 922 (989)
|+++++.++. +..+|..++.++...|+. ++..+..+.+....
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999988755 688999999998887774 44444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=106.85 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
+.|+.. .+..++..+.+.|++++|++.|+++++.+|. ++..|..++.+|...|++++|+..|+++++..|+ ++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 778665 7888889999999999999999999998866 8999999999999999999999999999999988 899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.+|.+|...|++++|+..|+++++. .||+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999999875 56654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=110.46 Aligned_cols=190 Identities=8% Similarity=0.018 Sum_probs=147.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
|+..++++++.+ .++..++..++.++...|++++|++++.+.+..+-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888888654 456666678899999999999999999998775421 346678888999999999999999999999
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 850 GKGIEP-----DNFTYYVMIDA--HCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 850 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+ ..| +..+...|+.+ ....| ++++|..+|+++.+.. |+...-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8 788 35566666544 44445 8999999999998764 3422222222389999999999999998776
Q ss_pred C----------CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 921 S----------GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 921 ~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
. .|+ ++.++..++......|+ +|.++++++++. .|+......+..
T Consensus 240 ~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~~~ 294 (310)
T 3mv2_B 240 DYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHHQE 294 (310)
T ss_dssp HHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHHHH
Confidence 5 255 78888888888888887 899999999875 788766555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-10 Score=113.18 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----H
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----T 859 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~ 859 (989)
..+..++..+...|++++|+..|+++.+. .|+ ...+..++.++.+.|++++|+..|+++++ ..|+.. .
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 34445555666666677777766666653 222 24566666666666666666666666666 444432 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH---------
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC--------- 930 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 930 (989)
+..++.++...|.. .+ ..+..++..+...|++++|+..++++++..|+ ++.++
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHH
Confidence 44444444433311 01 11223344455688999999999999999877 54433
Q ss_pred --------HHHHHHHHhcCChhHHHHHHHHHHhCCCcccc----hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 931 --------RTVANDFLREGVMDYAAKVLECMASFGWVSNS----ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 931 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..|.+.|++++|+..++++++. .|++ ..+..++..+...|++++|.+.++++
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 56788999999999999999999875 5653 57899999999999999999999875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=101.36 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=88.6
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++|+.. .+...+..+.+.|++++|++.|+++++.++. +..+|..++.++.+.|++++|+..++++++..|+ ++.+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 667654 6777788888888888888888888877655 7788888888888888888888888888888777 788888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.+|.+|...|++++|.+.|+++++. .|+ ...+..+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 8888888888888888888888764 675 445555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-10 Score=116.65 Aligned_cols=166 Identities=11% Similarity=-0.029 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~ 864 (989)
+...+..+...+...|++++|+..|++..+.. +.+...+..++..+...|++++|...++++.. ..|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHH
Confidence 44566677777778888888888888887732 33466778888888888888888888888777 6676553332 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCCh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVM 943 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 943 (989)
..+...++.++|++.++++++..|. +..++..++..+...|++++|+..++++++..|.. +..++..++.++...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4466677788888888888887765 78888888888888888888888888888877662 267788888888888888
Q ss_pred hHHHHHHHHHHh
Q 001966 944 DYAAKVLECMAS 955 (989)
Q Consensus 944 ~~A~~~~~~~~~ 955 (989)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-10 Score=99.95 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.|..++..+...|++++|..+++++++ ..|+ ...+..++..+...|++++|.+.++++.+.++. +...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 456667777777777777777777776 4453 346666777777788888888888887776544 677777788888
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
...|++++|.+.++++++..|. ++.++..++.++...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888877766 6777788888888888888888888877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=108.99 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA-HC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~ 868 (989)
+..++..+...|++++|+..|++..+.. +.+...+..++..+...|++++|+..++++++ ..|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 3445556666777777777777666521 33455677777777777777777777777666 44522222222211 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCChhHHH
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
..+...+|++.++++++..|. +..++..++.++...|++++|+..++++++..|.+ ++.++..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334567777777776655 67777777778888888888888888877777653 3557777788888888888887
Q ss_pred HHHHHHHh
Q 001966 948 KVLECMAS 955 (989)
Q Consensus 948 ~~~~~~~~ 955 (989)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-10 Score=117.84 Aligned_cols=163 Identities=7% Similarity=-0.072 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++.+..+. .......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHH
Confidence 44566788899999999999999999999999 889665 8888999999999999999999999887543 3333444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc---chhHHHHHhhhhc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---SISLADIVKGENS 974 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 974 (989)
....+...|+.++|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 555577889999999999999999998 9999999999999999999999999999875 564 5678999999999
Q ss_pred CCChhhHHHHHhh
Q 001966 975 GVDLDESKDLMKQ 987 (989)
Q Consensus 975 ~g~~~~a~~~~~~ 987 (989)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 9999999888775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=109.76 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA- 901 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 901 (989)
.+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++++..+ ++..+..++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 456677888999999999999999988 788665 788899999999999999999999987654 55555444433
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc---chhHHHHHhhhhcCCCh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---SISLADIVKGENSGVDL 978 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 978 (989)
+...++..+|+..++++++..|+ ++.++..++.++...|++++|...++++++. .|+ ...+..++..+...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 22333445689999999999988 8999999999999999999999999999876 554 45889999999999999
Q ss_pred hhHHHHHhhh
Q 001966 979 DESKDLMKQT 988 (989)
Q Consensus 979 ~~a~~~~~~~ 988 (989)
++|...+++.
T Consensus 161 ~~A~~~y~~a 170 (176)
T 2r5s_A 161 NAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999988763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.6e-10 Score=116.49 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=136.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
.|++++|.+++++..+.. +. .+.. .+++++|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 456777777777766531 11 0222 46777777776655 3456677888888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 001966 775 LDAMLEE----QVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN--L-KPA--TITYRSLLNGYNRMGNRSEVFVV 844 (989)
Q Consensus 775 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~ 844 (989)
+.+..+. +-.+ -..+|..++..|...|++++|+..|++..+.. . .+. ..++..++..|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8777642 1000 12466777777777788888888887776531 0 111 2456677777777 788888888
Q ss_pred HHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHH
Q 001966 845 FEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-S----AEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 845 ~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~ 912 (989)
|+++++ +.|+ ..++..++.++...|++++|++.++++++..+.. + ...+..++.++...|++++|+
T Consensus 138 ~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 138 YQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877776 3321 2356667777777788888888777777642111 1 235566666777777888888
Q ss_pred HHHHHHHHCCCccC----HHhHHHHHHHHHhcCChhHHHH
Q 001966 913 RLLNEMGESGFRLG----FASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 913 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
..+++++ ..|... ......++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887777 655411 11233444444 4566655544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-09 Score=104.03 Aligned_cols=176 Identities=12% Similarity=0.011 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG----NRSEVFVVF 845 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 845 (989)
+|...|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|+..|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666542 56666667777777777777777777777643 45566667776666 5 777888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 001966 846 EEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMP-ISAEAYKAIIKALCK----REEYSEALRLLN 916 (989)
Q Consensus 846 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 916 (989)
++..+.| +..++..|+..|.. .+++++|+++++++.+.++. .++.++..|+.+|.. .+++++|+..++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776633 44566777777766 67788888888888776531 126777778888777 778888888888
Q ss_pred HHHHCCCccCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 001966 917 EMGESGFRLGFASCRTVANDFLRE-G-----VMDYAAKVLECMASFG 957 (989)
Q Consensus 917 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 957 (989)
++.+.+ . ++.++..|+.+|... | ++++|..+++++.+.|
T Consensus 154 ~A~~~~-~-~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS-R-TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS-C-TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC-C-CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887762 2 556777888877654 2 7788888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-10 Score=98.07 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=99.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 818 LKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 818 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+.|+ ...+...+..|.+.|++++|+..|+++++ +.|+.. .|..++.++.+.|++++|++.++++++.++. +..+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 4455 34778888999999999999999999998 778654 7888899999999999999999999988766 88899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..++.++...|++++|++.|+++++..|+ +..++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 99999999999999999999999999988 888887777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=126.17 Aligned_cols=163 Identities=7% Similarity=-0.056 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
|++++|+..+++.++.. +.+...+..++..+...|++++|++.|++..+.. +.+..++..++..|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666666542 1245566666666666666777776666666632 233556666666666666666666666
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR---EEYSEALRLLNEMGES 921 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 921 (989)
+++++ +.|+.. .+..++.++...|++++|++.++++++..+. +..++..++.++... |++++|...++++++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66666 555433 5666666666666666666666666665544 566666666666666 6666666666666666
Q ss_pred CCccCHHhHHHHH
Q 001966 922 GFRLGFASCRTVA 934 (989)
Q Consensus 922 ~~~~~~~~~~~l~ 934 (989)
+|. +...+..++
T Consensus 158 ~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG-AVEPFAFLS 169 (568)
T ss_dssp TCC-CSCHHHHTT
T ss_pred CCc-ccChHHHhC
Confidence 655 444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-08 Score=98.67 Aligned_cols=175 Identities=11% Similarity=0.005 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ----NMEKAKQLFL 811 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 811 (989)
+|++.|++..+.+ +..++..++..|...+++++|+..|++..+.| +...+..+...|.. + ++++|++.|+
T Consensus 4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4566676766653 56677777777777888888888888877653 55667777777776 5 7888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHH
Q 001966 812 EMQQRNLKPATITYRSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPD---NFTYYVMIDAHCK----EGNVMEALKLK 880 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 880 (989)
+..+.| +...+..|+..|.. .+++++|+.+|++..+ ..|. ...+..|+.+|.. .+++++|++.|
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 887643 56677778887776 7888999999988887 4453 4577888888888 78899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCCC
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKR-E-----EYSEALRLLNEMGESGF 923 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 923 (989)
+++.+.+ .+..++..|+.+|... | ++++|+..++++.+.+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998862 2556788888888653 3 89999999999888873
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-09 Score=95.36 Aligned_cols=132 Identities=22% Similarity=0.329 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 867 (989)
.|..++..+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 45566667777777777777777776642 33456677777777778888888888888777 4454 34666777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|++.++++.+..+. +...+..++.++...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888888776544 6777888888888888888888888888776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-08 Score=102.59 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 001966 732 EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV-Q-NMEKAKQ 808 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 808 (989)
+..++|+++++.++..+|.+..+|+.....+...| .+++++.+++.++.... .+..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34456777777777777777777777777777777 47777777777776532 2556666666666555 5 7778888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh--------HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC-------
Q 001966 809 LFLEMQQRNLKPATITYRSLLNGYNRMGNRS--------EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN------- 872 (989)
Q Consensus 809 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~------- 872 (989)
+++++.+.. +-|..+|+.-...+.+.|.++ ++++.++++++ .+|.+. +|+....++.+.+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 888877643 445667777666666666666 88888888888 677444 78777777777765
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHHCC-----CccCH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY--------------------SEALRLLNEMGESG-----FRLGF 927 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~ 927 (989)
++++++++++++...+. |..+|..+...+.+.|+. .+......++.... ..+++
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888888888766 888888877777776653 33444444443332 01368
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++..|+++|...|+.++|.++++.+.+ .+.|-
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpi 335 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChH
Confidence 8889999999999999999999998764 35664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-09 Score=112.30 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=135.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK-AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
.|++++|.+++++..+... . .+.+ .+++++|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667777777777665411 1 0222 46777777776654 345667788888888
Q ss_pred HHHHHHHcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 001966 740 LFRDMLEKGL--AS----TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ--V-NPN--HDTYTTLINQYCKVQNMEKAKQ 808 (989)
Q Consensus 740 ~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 808 (989)
.|.++.+..+ .+ ..++..++..|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8777766432 11 3356677777777888888888888776531 1 111 2456667777777 88888888
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC------H-HHHHHHHHHHHhcCCHHHH
Q 001966 809 LFLEMQQRNLKP-A----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD------N-FTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 809 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~-~~~~~l~~~~~~~g~~~~A 876 (989)
.|++..+..... + ..++..++..|...|++++|+..|+++++ +.|+ . ..+..++.++...|++++|
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS--MYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 888777631000 1 34677777778888888888888888776 3221 1 1445556666677888888
Q ss_pred HHHHHHHHhCCCCC--CH--HHHHHHHHHHHccCCHHHHHH
Q 001966 877 LKLKDLIFDKRMPI--SA--EAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 877 ~~~~~~~~~~~~~~--~~--~~~~~l~~~~~~~g~~~~A~~ 913 (989)
+..+++++ ..+.. .. .....++..+ ..|+.+++..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888877 54321 11 1233344433 4566555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-10 Score=101.00 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=94.7
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..|+++++ +.|+.. .+..++..+...|++++|+..|+++++.++. +...|..++.++...|++++|+..++++++.
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34666666 677655 6777888888999999999999999887765 8888999999999999999999999999988
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.|+ ++.++..+|.+|...|++++|.+.++++++. .|+
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 121 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL--IAN 121 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 887 8888999999999999999999999988764 454
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=124.40 Aligned_cols=163 Identities=10% Similarity=-0.049 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALK 878 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 878 (989)
.|++++|++.|++..+.. +.+...+..++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999998742 34577899999999999999999999999999 788654 88889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE---GVMDYAAKVLECMAS 955 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 955 (989)
.++++++..+. +..++..++.++.+.|++++|++.++++++..|+ ++.++..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999998766 8899999999999999999999999999999988 899999999999999 999999999999987
Q ss_pred CCCccc-chhHHHHH
Q 001966 956 FGWVSN-SISLADIV 969 (989)
Q Consensus 956 ~~~~p~-~~~~~~l~ 969 (989)
. .|+ ...+..++
T Consensus 157 ~--~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 Q--GVGAVEPFAFLS 169 (568)
T ss_dssp H--TCCCSCHHHHTT
T ss_pred c--CCcccChHHHhC
Confidence 5 565 44455444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-07 Score=103.90 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=218.4
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHH
Q 001966 520 KAK-RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN-IAEA 597 (989)
Q Consensus 520 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 597 (989)
+.| +++.|+.+|+.++.. -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887764 222 8899999999998875 5688888888877776663 4556
Q ss_pred HHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 598 ISKFRCMLAR-GI-LPEVQTYSVLINGLS----KKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLY 671 (989)
Q Consensus 598 ~~~~~~~~~~-~~-~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 671 (989)
..+|+..+.. |. +++...|...+..+. .+++.+.+.++|+.++......-...|..... +.+......+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 6777777654 32 336677877777554 24567788888888887421111112221111 11111112222222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHH
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--K-----LEQALELFRDM 744 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~ 744 (989)
.+.. +.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 122233333333322100013345555544432211 0 34566788888
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C----
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR---N---- 817 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---- 817 (989)
+...|.....|...+..+...|+.++|..++++.+.. +.+...|...+ ...+.++. ++.+.+. .
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEAV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTHH---HHHHHHHTC------
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhHH---HHHHHHHHHhhccch
Confidence 8777766777777777777888888888888888866 22333332221 11111111 2222110 0
Q ss_pred --C---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCC
Q 001966 818 --L---KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG-NVMEALKLKDLIFDKRMPIS 891 (989)
Q Consensus 818 --~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~ 891 (989)
. ......|...+..+.+.+..+.|..+|+++ .. -.+....|...+..-...+ +.+.|.++|+.+++.-+. +
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~ 353 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-S 353 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-C
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-C
Confidence 0 111245777777777778889999999888 41 1123334443333333333 688999999998876433 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+..|...++...+.|+.+.|..+|+++ .+ +...|...+..-...|+.+.+.++++++.+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL----EK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS----CC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777788889999999999886 22 567777777777788998888888887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-08 Score=98.47 Aligned_cols=219 Identities=11% Similarity=-0.010 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNK----------LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ--NM 803 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 803 (989)
+|+.+++.++..+|.+..+|+.-...+...+. +++++.+++.++... +.+..+|+.-...+...| .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 45555555555555555555544444433332 466677777766543 225566666666666666 36
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN-RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE----------- 870 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----------- 870 (989)
++++.+++++.+.. +-|..+|+.-..++...|. ++++++.+.++++ .+|.+. +|+....++...
T Consensus 127 ~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 127 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 77777777777643 4456677777766667776 5777777777777 666444 666665555443
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 871 ---GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-----------EEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 871 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
+.++++++++++++...|. |..+|+.+...+.+. +.++++++.++++++..|+ +...+..++..
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~ 281 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILL 281 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHH
Confidence 4578888888888887766 888887776666665 4688999999999998877 65554444432
Q ss_pred H---HhcCChhHHHHHHHHHHhCCCcccc
Q 001966 937 F---LREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 937 ~---~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
. ...|..+++..++.++++ ++|..
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred HHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 2 246777888889988876 47754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-09 Score=101.43 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 867 (989)
.+..++..+...|++++|++.|++. +.|+..++..++.++...|++++|+..++++++ +.|+.. .+..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHH
Confidence 3445566666777777777776655 245666677777777777777777777777766 455433 566666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISA----------------EAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|++.++++++..+. +. .++..++.++.+.|++++|...++++++..|.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777777665433 22 56666666666677777777777766666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-06 Score=97.59 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 596 EAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK 642 (989)
Q Consensus 596 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 642 (989)
.+..+|++++.. .+.+...|...+..+.+.|+.++|..++.+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 344556665553 2334556666666666666666666666666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-07 Score=95.16 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=166.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-C-CHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS-N-KLQEAH 772 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 772 (989)
.+..++|+++++.++..+ |-+..+|+.-...+...| .+++++++++.++..+|.+..+|+.....+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567888888888774 567778888777777777 588999999999988888888888888888777 7 888899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNME--------KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN------- 837 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 837 (989)
++++++++... .+..+|+.-...+.+.|.++ +++++++++.+.. +-|..+|+.....+.+.++
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 99998887542 36777777666666666666 8999999998853 5567789888888888776
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----CCCC
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNV--------------------MEALKLKDLIFDKR-----MPIS 891 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~ 891 (989)
++++++.+++++. +.|++. .|..+...+.+.|+. .+..++..+++... ..++
T Consensus 224 ~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 7899999999998 888665 777777777766653 23333333333322 1357
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..++..++++|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 889999999999999999999999998755
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-09 Score=96.49 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=91.7
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 844 VFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.|+++++ +.|+.. .+..++..+.+.|++++|++.|+++++.++. +...|..++.++...|++++|+..++++++..
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 667554 6777788888999999999999999888765 88889999999999999999999999999988
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 923 FRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 923 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
|. ++.++..++.+|...|++++|.+.++++++. .|+
T Consensus 83 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 118 (142)
T 2xcb_A 83 IN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL--AAA 118 (142)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHT
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 87 8888999999999999999999999988764 564
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=101.45 Aligned_cols=131 Identities=14% Similarity=-0.008 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALC 903 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 903 (989)
..++..+...|++++|.+.|+.+.. ..|+......++..+.+.|+|++|+..++...... .|. ..++..++.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 3445556666666666666666655 44544445555566666666666666666554321 111 235666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 904 KREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|+..|+++.....+| .+.+.+.++.++.+.|+.++|...|+++.+. .|+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 6666666666666665332112 2345666666666666666666666666553 455
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-08 Score=99.02 Aligned_cols=201 Identities=9% Similarity=-0.085 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------CCCC------
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTL-------IEFLCISNKLQEAHQLLDAMLE------------EQVN------ 784 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~------ 784 (989)
..++...|.+.|.++.+..|.....|..+ ...+...++..+++..+.+.+. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57888999999999999888888888877 5667766666677666666554 1110
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHH
Q 001966 785 --PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NFTY 860 (989)
Q Consensus 785 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~ 860 (989)
.-...+..++..+...|++++|.++|+.+... .|+......++..+.+.|++++|+..|+...... .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 00234556777888999999999999988773 4655477777888999999999999999776521 221 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
..++.++...|++++|+..|+++......| ...++...+.++.+.|+.++|...|+++....|. ..++..|.+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 888999999999999999999998543214 4568889999999999999999999999998865 555544433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-09 Score=95.88 Aligned_cols=104 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 818 LKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 818 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+.|+ ...+..++..+...|++++|+..|+++++ +.|++. .|..++.++...|++++|++.|+++++.+|. ++.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 4454 45788899999999999999999999999 888655 7888999999999999999999999998876 88899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..++.+|.+.|++++|+..|+++++..|+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-08 Score=94.58 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+..++..+...|++++|...|+++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..+|..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4567778888888999999999998888 6664 447788888888999999999999999887655 78889999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRT--VANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+...|++++|+..++++++..|. +..++.. ++..+...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988877 6666644 44458888999999998887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-08 Score=96.13 Aligned_cols=126 Identities=15% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 755 FNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834 (989)
Q Consensus 755 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 834 (989)
+..++..+...|++++|+..+++.+ .|+...+..++..|...|++++|++.|++..+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344445555555555555555442 3344455555555555555555555555554421 2234445555555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001966 835 MGNRSEVFVVFEEMLGKGIEPDN-----------------FTYYVMIDAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
.|++++|+..|+++++ ..|+. ..+..++.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 5555555555555555 22211 244445555555555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=90.25 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 4444444455555555555555555444332 4444555555555555555555555555554444 4445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 001966 939 REGVMDYAAKVLECMAS 955 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~ 955 (989)
..|++++|.+.++++.+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=108.02 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----------------HHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----------------FTYYV 862 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~ 862 (989)
.+++++|++.++...+ ..| +...+..++..+.+.|++++|+..|+++++ +.|+. ..+..
T Consensus 126 L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHH
Confidence 3445555555544433 223 355778888888888888888888888888 66654 58888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++.+.|++++|+..++++++..+. +..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766 8899999999999999999999999999999988 88999999999999999
Q ss_pred hhHH-HHHHHHHHh
Q 001966 943 MDYA-AKVLECMAS 955 (989)
Q Consensus 943 ~~~A-~~~~~~~~~ 955 (989)
+++| ...+++|.+
T Consensus 280 ~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 280 QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9988 556676653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-07 Score=91.56 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=159.5
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 001966 695 KAGDLT-EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEK----------LEQALELFRDMLEKGLASTLSFNTLIEFLC 763 (989)
Q Consensus 695 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 763 (989)
+.|.++ +|+.+++.++..+ |-+..+|+.-...+...+. +++++.+++.++..+|.+..+|..-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 344443 5666666666653 4455555544333333222 567888888888888888888888777777
Q ss_pred HcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 001966 764 ISNK--LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN-MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM----- 835 (989)
Q Consensus 764 ~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 835 (989)
..|+ +++++.+++++++... .+..+|+.-...+...|. ++++++.++++.+.. +-|..+|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 7774 7888888888887542 366777777777777777 588888888888753 45566777766666554
Q ss_pred ---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 836 ---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE-----------GNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 836 ---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+.++++++.+++++. +.|++. +|+.+-..+.+. +.++++++.++++++..|. +...
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchH
Confidence 457899999999998 888666 676665555554 4588999999999988765 5444
Q ss_pred HHHHHHH---HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 895 YKAIIKA---LCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 895 ~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+..++.. ....|..+++...+.++++.+|. ...-|..+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~ 316 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 4443322 23468889999999999998866 444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-09 Score=116.22 Aligned_cols=150 Identities=11% Similarity=-0.035 Sum_probs=128.7
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--------------AEAYKAI 898 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l 898 (989)
..+++++|...+++..+ ..|+.. .+..++..+.+.|++++|+..|+++++..+... ..+|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 34567777777777666 566544 788899999999999999999999999876532 6899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+.++.+.|++++|+..++++++..|. ++.++..++.+|...|++++|+..|+++++. .|+ ...+..++..+...|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 8999999999999999999999999999875 775 6788999999999999
Q ss_pred hhhHH-HHHhhh
Q 001966 978 LDESK-DLMKQT 988 (989)
Q Consensus 978 ~~~a~-~~~~~~ 988 (989)
+++|+ .++++|
T Consensus 280 ~~~a~~~~~~~~ 291 (336)
T 1p5q_A 280 QLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 99984 355543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.9e-09 Score=98.23 Aligned_cols=120 Identities=10% Similarity=0.109 Sum_probs=79.7
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCH--
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEY-- 908 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 908 (989)
...|++++|...+++.++ ..|+. ..+..++.++...|++++|+..++++++..+. +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 345667777777777766 55543 36666667777777777777777777766544 66677777777 6667776
Q ss_pred HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 909 SEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++|+..++++++..|. ++.++..++.+|...|++++|...++++++.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777666 6677777777777777777777777777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.2e-08 Score=100.58 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCH----HHHHH
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRN-LKPAT----ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI-EPDN----FTYYV 862 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~ 862 (989)
.+..+...|++++|..++++..+.. ..|+. ..+..++..+...|++++|+..++++++... .++. .++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677788888888888877632 11221 1233566777777888999998888887211 1221 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHH
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDK------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCR 931 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~ 931 (989)
++.+|...|++++|+.+++++++. .......++..++.+|.+.|++++|+..++++++..++. -+.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999988841 111123478889999999999999999999988654331 167889
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 001966 932 TVANDFLREGV-MDYAAKVLECMAS 955 (989)
Q Consensus 932 ~l~~~~~~~g~-~~~A~~~~~~~~~ 955 (989)
.+|.+|.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=90.08 Aligned_cols=117 Identities=14% Similarity=0.027 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +...+..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3455555555555666666666666555 3443 234555555555566666666666665554433 45555556666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+...|++++|...++++++..|. ++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66666666666666666555554 555555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-07 Score=97.06 Aligned_cols=161 Identities=8% Similarity=-0.024 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP---IS-- 891 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-- 891 (989)
.+...+..+...|++++|.+.+++.++ ..|.. ..+..++..+...|++++|+..++++++.... +.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK--KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc--cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344455556666666666666666665 22211 11233445555666667777766666643211 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH---HCCCc-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMG---ESGFR-L--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---- 961 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 961 (989)
..++..++..|...|++++|+..+++++ +..+. + ...++..+|.+|...|++++|...++++++.....+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666777777777776665 22222 0 124566667777777777777766666654211100
Q ss_pred -chhHHHHHhhhhcCCChhhH-HHHHh
Q 001966 962 -SISLADIVKGENSGVDLDES-KDLMK 986 (989)
Q Consensus 962 -~~~~~~l~~~~~~~g~~~~a-~~~~~ 986 (989)
...+..++..+...|++++| ...++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34556666666666666666 55444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=97.90 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=143.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI---TYRSLLNGYNRMGNRSEVFVVFEEMLGK 851 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 851 (989)
+.++......|+..+...+...+.-. ++ .+.......+.. .+...+..+...|++++|..++++.++.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--II-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--TH-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--HH-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34444333467777777776665322 11 112211122222 3344567788999999999999999982
Q ss_pred -CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 852 -GIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 852 -g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
...|+.. .+..++..+...|++++|+..++++++.... ++ ..++..++.+|...|++++|+..++++++.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1223322 2224677788889999999999999985322 22 346899999999999999999999999842
Q ss_pred ------CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCC-hhhHHHHHhh
Q 001966 922 ------GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVD-LDESKDLMKQ 987 (989)
Q Consensus 922 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~-~~~a~~~~~~ 987 (989)
.......++..+|.+|...|++++|...++++++.. ..+. ...+..++..+...|+ +++|.+.+++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 111135578999999999999999999999987531 1222 4678999999999995 6999988875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=88.96 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC------HHhHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG------FASCRT 932 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 932 (989)
++..++..+.+.|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|+..++++++..|+.. ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 5666777888888888888888888877655 777888888888888888888888888877654411 246777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 933 VANDFLREGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+|.++...|++++|++.|+++++. .||++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 888888888888888888887763 566554433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=87.92 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 33467899999999999999999999999998 6775 458888999999999999999999999998765 8899999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++...|++++|+..++++++..|. +..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 999999999999999999999999877 78889999999887764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.1e-09 Score=95.51 Aligned_cols=111 Identities=12% Similarity=-0.011 Sum_probs=93.6
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 809 LFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 809 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.|+++.. +.| +...+..++..+...|++++|+..|+++++ ..|++. .|..++.++...|++++|++.|+++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455554 344 355778888999999999999999999998 778554 7888889999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. ++.++..++.++...|++++|+..|+++++..|+
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 766 7889999999999999999999999999988765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-08 Score=86.11 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 444445555555555555555555554 3332 224444455555555555555555555544332 444555555555
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
...|++++|...++++++..|. ++.++..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 5555555555555555555444 44444444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=87.36 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+.+.|++++|+..|+++++..+. +..+|..++.++.+.|++++|+..++++++..|. ++.++..+|.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 5666677777788888888888888777655 7777888888888888888888888888887776 7777888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 001966 939 REGVMDYAAKVLECMASF 956 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~ 956 (989)
..|++++|...++++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=92.37 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..+|.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 5677888999999999999999999988765 8999999999999999999999999999999887 8999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccc-chhH--HHHHhhhhcCCChhhHHHHHhhh
Q 001966 939 REGVMDYAAKVLECMASFGWVSN-SISL--ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..|++++|.+.++++++. .|+ ...+ ...+..+...|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999875 564 4555 44444477889999999888753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=96.66 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCC--HHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG---IEPD--NFTY 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~--~~~~ 860 (989)
...+..+...|++++|++.+++..+...... ...+..++..+...|++++|+..++++++.. ..+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3345556666777777777766665321111 1223445666777888888888888887621 1122 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHh
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFD---KRMP-I--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFAS 929 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 929 (989)
..++..|...|++++|+.+++++++ ..+. + ...++..++.+|...|++++|+..++++++...+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7788888899999999999988873 2211 1 12578889999999999999999999987654221 1667
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 001966 930 CRTVANDFLREGVMDYA-AKVLECMAS 955 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 955 (989)
+..+|.+|.+.|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88999999999999999 777887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-08 Score=87.25 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|+..|+++++ +.|+. ..+..++.++.+.|++++|+..++++++.++. +..+|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45677788888888999999999999888 67754 47888888899999999999999999888765 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCC------CccCHHhHHHHHHHH
Q 001966 901 ALCKREEYSEALRLLNEMGESG------FRLGFASCRTVANDF 937 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~ 937 (989)
++...|++++|+..++++++.. |. +..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHH
Confidence 9999999999999999988887 44 555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=103.08 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..+++..+.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666542 1255666666777777777777777777766632 3345566777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|...|+++++ +.|+.. .+...+....+ ..++...... .......+..+...++..+ .|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNSI-EERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHHH-HHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHHH-HHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 7777777777777777776 444331 11111111111 1111111111 1122333555555554433 678888
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDYAAKVLECMAS 955 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 955 (989)
|++.++++++..|. +......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888887777665 555556666666665 667788888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=105.51 Aligned_cols=191 Identities=8% Similarity=-0.003 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...+..++..+...|++++|+..|++..+.. +.+...|..++.++...|++++|+..++++++ +.|+.. .+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45678888899999999999999999998842 33678899999999999999999999999998 788655 888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
.++...|++++|++.++++++.++. +...+...+....+ ..++...........+. ++.+...++..+ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNSIEERRIHQ-ESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCC-CCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHHHHHHHHhh-hHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999876432 11111111111111 12222222222233333 666666666654 69999
Q ss_pred HHHHHHHHHHhCCCcccc-hhHHHHHhhhhcC-CChhhHHHHHhhh
Q 001966 945 YAAKVLECMASFGWVSNS-ISLADIVKGENSG-VDLDESKDLMKQT 988 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~ 988 (989)
+|.+.++++++ ..|+. .....+...+... +.+++|.++|++.
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998865 36753 3445555545443 6788899888754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-09 Score=101.29 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----------------HH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----------------FT 859 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----------------~~ 859 (989)
....|++++|.+.++...+. .......+..++..+...|++++|+..|+++++ +.|+. ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHHH
Confidence 34455666666555432221 111234567777778888888888888888887 44432 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++.++...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. +..++..++.++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 777888888889999999999998887655 7888888999999999999999999998888877 78888888888888
Q ss_pred cCChhHHH-HHHHHHHh
Q 001966 940 EGVMDYAA-KVLECMAS 955 (989)
Q Consensus 940 ~g~~~~A~-~~~~~~~~ 955 (989)
.|+.+++. ..+..+..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776 55555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-08 Score=86.50 Aligned_cols=117 Identities=9% Similarity=-0.096 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 36777889999999999999999999987655 7899999999999999999999999999999887 899999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCCh
Q 001966 938 LREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDL 978 (989)
Q Consensus 938 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 978 (989)
...|++++|...++++.+. .| +...+..++..+...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999875 56 467788888888777664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-08 Score=86.27 Aligned_cols=99 Identities=16% Similarity=0.020 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+.+.|++++|+..++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4566778888899999999999999988766 8889999999999999999999999999998888 8888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccc
Q 001966 939 REGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|...++++++. .|+
T Consensus 97 ~~g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHh--CcC
Confidence 999999999999988753 564
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-08 Score=93.91 Aligned_cols=156 Identities=10% Similarity=-0.098 Sum_probs=98.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEPDN-FTYYVMIDAHCKEGNV 873 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~ 873 (989)
..|++++|.+.++.+.. .......++..++..+...|++++|...++++++ .+..|.. ..+..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45667777764444432 1112345666777777777777777777777665 1122222 2566677777778888
Q ss_pred HHHHHHHHHHHhC---CC-C--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---cC--HHhHHHHHHHHHhcCC
Q 001966 874 MEALKLKDLIFDK---RM-P--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR---LG--FASCRTVANDFLREGV 942 (989)
Q Consensus 874 ~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~ 942 (989)
++|++.++++++. .. . ....++..++.++...|++++|...++++++.... +. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887777654 11 1 12345677788888888888888888877643211 11 3345778888888888
Q ss_pred hhHHHHHHHHHHh
Q 001966 943 MDYAAKVLECMAS 955 (989)
Q Consensus 943 ~~~A~~~~~~~~~ 955 (989)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-09 Score=101.07 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=112.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---------------
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA--------------- 892 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------- 892 (989)
+......|.++++.+.++...+ ..++ ...+..++..+...|++++|++.|+++++..+. +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 3344556677777776664333 2222 236777889999999999999999999987544 33
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 893 -EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 893 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.+|..++.++.+.|++++|+..++++++..|. ++.++..+|.+|...|++++|.+.++++++. .|+ ...+..+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 78999999999999999999999999999887 8999999999999999999999999999875 675 677888888
Q ss_pred hhhcCCChhhHH
Q 001966 971 GENSGVDLDESK 982 (989)
Q Consensus 971 ~~~~~g~~~~a~ 982 (989)
.+...|+..++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 888777777766
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=94.35 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=99.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCH--
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDA-HCKEGNV-- 873 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~-~~~~g~~-- 873 (989)
...|++++|+..+++..+.. +.+...|..++..|...|++++|...|+++++ +.|+.. .+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888998888887743 44577888899999999999999999999988 667544 67777887 7788998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++|+..++++++.++. +..++..++.++...|++++|+..++++++..|.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999988765 7888999999999999999999999999998876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-07 Score=81.77 Aligned_cols=95 Identities=13% Similarity=-0.044 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +...+..++.++...|++++|...++++++..|. ++.++..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444455555555555555555555554433 4555555555555555555555555555555544 4555555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 001966 939 REGVMDYAAKVLECMAS 955 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~ 955 (989)
..|++++|.+.++++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=83.71 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 47788889999999999999999999987654 7889999999999999999999999999998877 889999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcC
Q 001966 938 LREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSG 975 (989)
Q Consensus 938 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 975 (989)
...|++++|...++++.+. .|+ ...+..++..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc
Confidence 9999999999999999764 564 56667666665443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-07 Score=89.31 Aligned_cols=106 Identities=16% Similarity=0.036 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|+..|+++++ +.|+.. .+..++.++...|++++|+..++++++.++. +..+|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44666677777777777777777777776 556433 6666667777777777777777777766544 6667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++...|++++|+..|+++++..|+ +...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 117 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGSDAM 117 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 777777777777777777766655 444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=89.31 Aligned_cols=104 Identities=8% Similarity=-0.089 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|...|+++++ ..|+.. .|..++.++...|++++|+..++++++.++. ++..+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 45677788888999999999999999998 778555 7888889999999999999999999988766 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++...|++++|+..++++++..|. ++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 122 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA-QPAH 122 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-CGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-Ccch
Confidence 999999999999999999888765 4443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-08 Score=87.08 Aligned_cols=99 Identities=13% Similarity=-0.092 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 856 DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 856 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
+...+..++..+...|++++|+..++++++..+. +..+|..++.++...|++++|+..++++++..|. ++.++..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3446777777777888888888888887776654 6777888888888888888888888888877776 7777888888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 001966 936 DFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+|...|++++|...++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888877653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-08 Score=90.05 Aligned_cols=99 Identities=8% Similarity=-0.132 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.|+++++..+. +..+|..++.+|.+.|++++|+..++++++..|. ++.+|..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5666777777888888888888888777655 7777888888888888888888888888887776 7777888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCccc
Q 001966 939 REGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|.+.++++++. .|+
T Consensus 91 ~~g~~~~A~~~~~~al~~--~p~ 111 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA--EGN 111 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH--HSS
T ss_pred HccCHHHHHHHHHHHHHh--CCC
Confidence 888888888888877654 564
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=93.05 Aligned_cols=153 Identities=11% Similarity=-0.047 Sum_probs=116.7
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccC
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDK----R-MPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g 906 (989)
...|++++|.+.++.+.. ..+. ...+..++..+...|++++|+..++++++. + .+....++..++..+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457999999996666544 2223 347888899999999999999999999872 1 1124567889999999999
Q ss_pred CHHHHHHHHHHHHHC---CC-c--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-c----chhHHHHHhhhhcC
Q 001966 907 EYSEALRLLNEMGES---GF-R--LGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-N----SISLADIVKGENSG 975 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~ 975 (989)
++++|+..++++++. .+ . ....++..++.++...|++++|...++++.+..-.. + ...+..++..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999998876 32 2 135568899999999999999999999987531111 1 23458889999999
Q ss_pred CChhhHHHHHhh
Q 001966 976 VDLDESKDLMKQ 987 (989)
Q Consensus 976 g~~~~a~~~~~~ 987 (989)
|++++|.+.+++
T Consensus 161 g~~~~A~~~~~~ 172 (203)
T 3gw4_A 161 KNLLEAQQHWLR 172 (203)
T ss_dssp TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=80.82 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|...++++++..+. +...+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 456788899999999999999999999998 6774 457888899999999999999999999998765 889999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
.++...|++++|...++++++..|. ++.++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence 9999999999999999999999887 788877777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-07 Score=83.77 Aligned_cols=95 Identities=16% Similarity=0.007 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
.+..++..+...|++++|++.++++++..+. + ..+|..++.++...|++++|+..++++++..|+ ++.++..++.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHH
Confidence 3333444444444444444444444443221 1 344444444444444444444444444444443 4444444444
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 001966 936 DFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~ 955 (989)
+|...|++++|...++++++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=83.58 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----HHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--S----AEA 894 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~ 894 (989)
..++..++..+.+.|++++|+..|+++++ +.|+.. .|..++.++...|++++|++.++++++.++.. + ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34677788888888888888888888888 777655 67778888888888888888888887653321 1 246
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|..++.++...|++++|++.|+++++..++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888888899999999999988876644
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=84.52 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-------HHhHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG-------FASCR 931 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 931 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. + +.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHH
Confidence 5566667777777777777777777766544 6677777777777777777777777777766544 3 66777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE 972 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 972 (989)
.++.+|...|++++|.+.++++.+. .|+...+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7777788888888888887777664 45555555544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-08 Score=111.83 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=121.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----------------HHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----------------FTYY 861 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~ 861 (989)
..+++++|++.|+...+ ..|+ ...|..++..+.+.|++++|+..|+++++ +.|+. ..|.
T Consensus 246 ~l~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHH
Confidence 44566677777765544 2333 45788899999999999999999999998 66654 5788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.++.++.+.|++++|+..++++++..+. +..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998766 8899999999999999999999999999999887 8889999999999999
Q ss_pred ChhHHH-HHHHHHHhC
Q 001966 942 VMDYAA-KVLECMASF 956 (989)
Q Consensus 942 ~~~~A~-~~~~~~~~~ 956 (989)
++++|. ..+++|...
T Consensus 400 ~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 400 EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhh
Confidence 998775 456666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=82.47 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.+..++..+...|++++|+..|+++++ ..|+.. .|..++.++...|++++|+..++++++.++. +..++..++.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 355667778888889999998888888 777544 7778888888889999999999998888766 788888888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCc
Q 001966 903 CKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|+..++++++..|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999988887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-07 Score=82.15 Aligned_cols=117 Identities=14% Similarity=0.013 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+.+...+..++..+...|++++|...|++.++ ..|+. ..+..++.++...|++++|++.++++++..+. +..+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 34567899999999999999999999999999 78884 57888899999999999999999999988655 7899
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++.++...|++++|...++++++..|+ +..++..++.+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHhh
Confidence 999999999999999999999999999887 77777777766543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.6e-07 Score=100.19 Aligned_cols=170 Identities=10% Similarity=0.015 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 802 NMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGN----------RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 802 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
..++|++.++++... .|+ ..+|+.-..++...|+ ++++++.++++++ ..|+.. +|..-.+++.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 345677788777773 344 5567776666666666 7888888888887 677555 77777777878
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc------
Q 001966 870 EG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGFRLGFASCRTVANDFLRE------ 940 (989)
Q Consensus 870 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 940 (989)
.| ++++|++.++++++.++. +..+|...+.++.+.| .++++++.++++++.+|. +..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 78 668888888888887766 7888888888888888 788888888888888877 788888888777763
Q ss_pred --------CChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChh
Q 001966 941 --------GVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLD 979 (989)
Q Consensus 941 --------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 979 (989)
+.+++|.+.+++++.. .|+ ...|..+...+...|..+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4567788888877654 674 556666666666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=82.49 Aligned_cols=103 Identities=15% Similarity=-0.005 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...|+++++ ..|+. ..+..++.++...|++++|+..++++++.++. +..+|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 34567788888888888888899888888888 66754 47778888888899999999999998887755 7888889
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++...|++++|+..++++++..|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999988877644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=85.93 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC------------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGI------------------EPDNF-TYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~------------------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
.+...+..+.+.|++++|+..|+++++ + .|... .+..++.++.+.|++++|+..+++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALT--RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444555555566666666666666555 2 22222 45555555666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.++. +..+|..++.++...|++++|+..++++++..|.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 55443 5555666666666666666666666666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-07 Score=79.59 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVA 934 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 934 (989)
..++..+...|++++|++.++++++..+. +. .++..++.++.+.|++++|+..++++++..|+ + +.++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 33445555566666666666666554333 22 45555666666666666666666666665554 3 45566666
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+|...|++++|...++++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-07 Score=100.07 Aligned_cols=171 Identities=10% Similarity=0.029 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN----------MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-- 836 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 836 (989)
++|++.+++++..... +..+|+.-...+...|+ +++++++++++.+.. +-+..+|..-...+.+.|
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4556666666654211 33445554444544454 788888888888743 455778888888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---------
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG-NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR--------- 905 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 905 (989)
+++++++.++++++ .+|.+. +|.....++.+.| .+++++++++++++.++. |..+|...+.++.+.
T Consensus 124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 77999999999999 788555 8888888888888 899999999999998877 889999888887763
Q ss_pred -----CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 906 -----EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 906 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
+.+++|++.+.+++...|+ +..+|+.+.+.+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 6689999999999999998 99999999999999998665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=82.80 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------C
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI------S-----AEAYKAIIKALCKREEYSEALRLLNEMGES-------G 922 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 922 (989)
...+..+.+.|++++|+..|+++++..+.. + ..+|..++.++.+.|++++|+..++++++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334455555556666666665555543321 2 237888888888888888888888888888 8
Q ss_pred CccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 923 FRLGFASC----RTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 923 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
|+ +..+| +.+|.++...|++++|+..|+++++. .|+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel--~p~ 134 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM--IEE 134 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 77 78888 88999999999999999999888763 563
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-07 Score=79.50 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKA 897 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 897 (989)
+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++++..+. + ..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 45677889999999999999999998 566544 7788899999999999999999999987655 4 788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
++.++...|++++|+..++++++..|+ ++.+.....
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~ 117 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQE 117 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 999999999999999999999999877 555544333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-07 Score=101.91 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA----------------TITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
....+..+...+.+.|++++|+..|++..+. .|+ ...|..++.+|.+.|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467888889999999999999999999883 343 4788999999999999999999999999
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHHHC
Q 001966 850 GKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR-LLNEMGES 921 (989)
Q Consensus 850 ~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~ 921 (989)
+ +.|+.. .+..++.++...|++++|+..|+++++..+. +..++..++.++.+.|+.++|.+ .+.+|...
T Consensus 345 ~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 345 G--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred h--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 778655 8888999999999999999999999998765 77889999999999999888775 44544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=87.45 Aligned_cols=110 Identities=9% Similarity=-0.043 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDK------------------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
.+...+..+.+.|++++|+..|+++++. ++. +..+|..++.++.+.|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 5677889999999999999999999986 222 457899999999999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch-h-HHHHHhhh
Q 001966 921 SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI-S-LADIVKGE 972 (989)
Q Consensus 921 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~-~~~l~~~~ 972 (989)
..|. ++.+|..+|.+|...|++++|...++++++. .|+.. . ...+....
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIVT 142 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 9988 8999999999999999999999999999875 78643 3 33444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=78.06 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-cCHHhHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-LGFASCRTVANDF 937 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 937 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. .+..++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5566667777777777777777777766544 6677777777777777777777777777776543 1366677777777
Q ss_pred Hhc-CChhHHHHHHHHHHhC
Q 001966 938 LRE-GVMDYAAKVLECMASF 956 (989)
Q Consensus 938 ~~~-g~~~~A~~~~~~~~~~ 956 (989)
... |++++|.+.++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7777777777777553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=83.77 Aligned_cols=98 Identities=15% Similarity=-0.010 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------------NFTYYVMIDAHCKEGNVMEALKLKDLIFDK---- 886 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 886 (989)
.+...+..+.+.|++++|+..|+++++ +.|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445566667777777777777777777 5555 127788888888888888888888888887
Q ss_pred ---CCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 ---RMPISAEAY----KAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. +..+| ...+.++...|++++|+..|+++++..|.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 655 67788 89999999999999999999999988766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=82.08 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=41.1
Q ss_pred CCHhHHHHHHHHHHhCCC---CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGI---EPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~---~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
|++++|+..|+++++ + .|+.. .+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|
T Consensus 4 g~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 445555555555554 3 23222 4444455555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHCCCc
Q 001966 912 LRLLNEMGESGFR 924 (989)
Q Consensus 912 ~~~~~~~~~~~~~ 924 (989)
+..++++++..|.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 5555555544433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=99.84 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAH 867 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 867 (989)
..+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 4455556666666666666666666655 2343321 112233333322211 12677788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH-HHhcCChhHH
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND-FLREGVMDYA 946 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 946 (989)
.+.|++++|+..++++++.++. +..+|..++.+|...|++++|+..|+++++..|. +..++..|+.+ ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887655 7888888888888888888888888888888776 77777777777 3445666777
Q ss_pred HHHHHHHHhCCCccc
Q 001966 947 AKVLECMASFGWVSN 961 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~ 961 (989)
.+.|++|.+. .|+
T Consensus 319 ~~~~~~~l~~--~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKG--KDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCC--CCC
Confidence 8888887543 453
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-07 Score=103.29 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..+...|++++|+..|+++++ +.|+.. .+..++.++.+.|++++|++.++++++.++. +..+|..++.+|..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344556778888889888888888 677644 7888888888999999999999999888765 78888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVAND--FLREGVMDYAAKVLE 951 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 951 (989)
.|++++|++.++++++..|+ +..++..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999888877 67777777777 888899999988887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=81.71 Aligned_cols=92 Identities=15% Similarity=0.013 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 869 KEGNVMEALKLKDLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
..|++++|+..|+++++.+ +. +..++..++.++...|++++|+..++++++..|+ ++.++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 4689999999999999874 33 6788999999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHHhCCCcccchh
Q 001966 946 AAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 946 A~~~~~~~~~~~~~p~~~~ 964 (989)
|...++++++. .|+...
T Consensus 80 A~~~~~~al~~--~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAE--TSDDET 96 (117)
T ss_dssp HHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHHHh--CCCcHH
Confidence 99999999864 565433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-07 Score=82.74 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS---- 891 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---- 891 (989)
++..++..+...|++++|...++++++ +.+ +. .++..++..+...|++++|++.++++++.... .+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 556666666777777777777777665 211 11 25666777888888888888888887654111 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++..++.++...|++++|...++++++.... ....++..++.+|...|++++|.+.++++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446777888888888888888888887754211 1245678889999999999999999988765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.5e-07 Score=96.61 Aligned_cols=89 Identities=12% Similarity=-0.015 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
+..+|..++.+|.+.|++++|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++. .|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3445555666666666666666666666665555 5556666666666666666666666665543 443 44455555
Q ss_pred hhhhcCCChhhHH
Q 001966 970 KGENSGVDLDESK 982 (989)
Q Consensus 970 ~~~~~~g~~~~a~ 982 (989)
..+...++.++++
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.7e-07 Score=79.72 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--IS----AEAY 895 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 895 (989)
..+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|+..++++++..+. ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4566677777777777777777777777 4554 336666777777778888888887777765432 12 6677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
..++.++...|++++|...++++++..+ ++.....++.+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 7788888888888888888888877664 4555555554433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-07 Score=102.02 Aligned_cols=123 Identities=12% Similarity=-0.020 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++..+.+.|++++|++.++++++..+. +..+|..++.+|.+.|++++|+..++++++..|+ ++.++..+|.+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344556677899999999999999998766 8999999999999999999999999999999988 89999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCccc-chhHHHHHhh--hhcCCChhhHHHHHh
Q 001966 940 EGVMDYAAKVLECMASFGWVSN-SISLADIVKG--ENSGVDLDESKDLMK 986 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 986 (989)
.|++++|.+.++++++. .|+ ...+..++.. +..+|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999875 674 5667777776 788899999998876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=93.21 Aligned_cols=94 Identities=13% Similarity=-0.033 Sum_probs=83.3
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 854 EPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 854 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
.|.. ..|..++.++.+.|++++|++.++++++..+. +..+|..++.+|...|++++|+..++++++..|. +..++..
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~ 346 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4433 37888999999999999999999999998765 8899999999999999999999999999999988 8899999
Q ss_pred HHHHHHhcCChhHHHHH
Q 001966 933 VANDFLREGVMDYAAKV 949 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~ 949 (989)
++.++...++.+++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888877543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=75.37 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-ISAEAYKAII 899 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 899 (989)
...+..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++++..+. .+..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44566677777777778888877777777 55543 36677777777788888888888888776422 1567777788
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHCCCc
Q 001966 900 KALCKR-EEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 900 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 924 (989)
.++... |++++|++.++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888 8888888888887777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-05 Score=88.87 Aligned_cols=197 Identities=11% Similarity=0.024 Sum_probs=116.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCh-----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLAST-----------------LSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPN 786 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 786 (989)
...+.+.|++++|++.|..+++..+... .++..++..|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556678888888888888888765211 13566777777777777777777776642 11112
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCC-
Q 001966 787 H----DTYTTLINQYCKVQNMEKAKQLFLEMQQ----RNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIE- 854 (989)
Q Consensus 787 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~- 854 (989)
. .+.+.+...+...|++++|++++++... .+..+. ..++..++..+...|++++|..+++++.. .+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333344455677777777766543 122222 34566677777777777777777776655 1221
Q ss_pred -CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 855 -PDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDK--RM-PI-S--AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 855 -p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|.. ..+..++..|...|++++|..+++++... .. .| . ...+..++..+...|++++|...+.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 24555667777777777777777766542 11 11 1 234555666666777777777777766655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-07 Score=94.67 Aligned_cols=152 Identities=9% Similarity=-0.053 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
....+..++..+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556778888999999999999999999874 344332 233455555543331 237888999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEY 908 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 908 (989)
+|.+.|++++|+..++++++ +.|++. .+..++.++...|++++|++.|+++++..+. +..++..+..+ ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 788654 8889999999999999999999999988765 77788888777 4456788
Q ss_pred HHHHHHHHHHHHCCCc
Q 001966 909 SEALRLLNEMGESGFR 924 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~ 924 (989)
+++...|.++....|.
T Consensus 316 ~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhhCCCCC
Confidence 8999999999888765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.8e-07 Score=80.01 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY----------SEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+.+++|++.++++++.+|. +.++|..++.++...|++ ++|+..|+++++..|+ +..+|+.+|.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 4455555555555555544 555555555555555443 3666666666666655 566666666666655
Q ss_pred C-----------ChhHHHHHHHHHHhCCCcccch
Q 001966 941 G-----------VMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 941 g-----------~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
| ++++|++.|+++++. .|+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 3 566666666666543 55543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=86.83 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=147.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLD----------------GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS 751 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 751 (989)
...+.+.|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+..... .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999988642211 12477889999999999999999999887433 22
Q ss_pred h----hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 001966 752 T----LSFNTLIEFLCISNKLQEAHQLLDAMLE----EQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL-- 818 (989)
Q Consensus 752 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 818 (989)
. .+...+...+...|++++|..++++... .+..+. ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233344555567899999999998863 233333 457788999999999999999999988653 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CC-CC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 819 KPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK--GI-EP-DN--FTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 819 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.+. ..++..++..|...|++++|..++++.+.. .+ .| .. ..+..++..+...|++++|...+.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222 457889999999999999999999998761 11 12 11 24556678888999999999999988764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=72.42 Aligned_cols=111 Identities=8% Similarity=0.019 Sum_probs=84.7
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEA 911 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 911 (989)
+++++|+..|++..+.| .|+.. |+..|...+.+++|++.|+++.+.+ ++.++..++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35777888888887755 33322 6677777777888888888888764 67778888888877 7888888
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFG 957 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 957 (989)
...++++.+.+ ++.++..|+.+|.. .+++++|.++++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888775 67788888888888 788888888888887764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-06 Score=78.64 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC----HH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG-IEPD----NF 858 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~ 858 (989)
++..+...+...|++++|+..+++..+... .++ ..++..++..+...|++++|...++++++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666677777777777766654210 011 1367777788888888888888888877610 0111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKR--MP---ISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.+..++.++...|++++|.+.++++++.. .. .....+..++.++...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56677788888999999999888887541 11 123567788889999999999999999887653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.7e-07 Score=76.03 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC------HHhHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG------FASCRT 932 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 932 (989)
.+..++..+...|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ + ..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 4445555555555555555555555554433 4555555555555555555555555555555544 3 444455
Q ss_pred HHHHHHhcCChhHHHH
Q 001966 933 VANDFLREGVMDYAAK 948 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~ 948 (989)
++.++...|++++|..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555554444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.1e-07 Score=76.89 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-------ch
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-------SI 963 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 963 (989)
+...|..++..+...|++++|+..++++++..|. ++.++..+|.+|...|++++|++.++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567778888888888888888888888888877 7888888888888888888888888888754 564 45
Q ss_pred hHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 964 SLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 964 ~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.+..++..+...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 6677777777778877777666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=65.09 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +..++..++.++.+.|++++|+..++++++..|. ++.++..++.++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 4555666666666666666666666665443 5666666666666666666666666666666655 5666666666655
Q ss_pred hc
Q 001966 939 RE 940 (989)
Q Consensus 939 ~~ 940 (989)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.9e-05 Score=68.09 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 876 (989)
+++++|++.|++..+.| .|+.. |...|...+.+++|+..|++..+.| +...+..|+.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788888888888766 33333 7777777778888888998888843 56677888888887 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESG 922 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 922 (989)
++.|+++.+.+ ++.++..|+..|.. .++.++|...++++.+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998865 67888889988888 889999999999998887
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.3e-06 Score=74.86 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=66.6
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN----------VMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
+.+.+++|+..+++.++ +.|+.. .|..++.++...++ +++|+..|+++++.+|. +..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556777777777777 666444 66666666666655 45888888888888766 788888888888
Q ss_pred HccC-----------CHHHHHHHHHHHHHCCCc
Q 001966 903 CKRE-----------EYSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g-----------~~~~A~~~~~~~~~~~~~ 924 (989)
...| ++++|++.|+++++.+|+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8774 899999999999998876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=69.93 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|++.++++++..+. +...+..++.++...|++++|+..++++++..|. ++.++..++.+|...|++++|...++++++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555554433 4555555555555555555555555555555544 455555555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=69.99 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
++|+..|+++++ ..|+.. .+..++.++...|++++|++.++++++.++. +..+|..++.++...|++++|+..+++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457788888888 677554 7788888899999999999999999887765 788889999999999999999999999
Q ss_pred HHHCCCc
Q 001966 918 MGESGFR 924 (989)
Q Consensus 918 ~~~~~~~ 924 (989)
+++..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-05 Score=82.41 Aligned_cols=123 Identities=10% Similarity=-0.075 Sum_probs=84.0
Q ss_pred HHhcCCHhHHHHHHHHHHh---CCCCCC---HH-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLG---KGIEPD---NF-TYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYK 896 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~---~g~~p~---~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~ 896 (989)
+...|++++|+.++++.++ .-+.|+ .. +++.|+.+|...|++++|+.+++++++ .|+. ++ ..++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 4566777777777777665 112232 22 566777778888888888887777764 2333 32 3477
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-----CCCccCHHh---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 897 AIIKALCKREEYSEALRLLNEMGE-----SGFRLGFAS---CRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.|+..|..+|++++|+.+++++++ .|++ ++.+ ...++.++...|.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887764 3544 4443 467778888888888888888888753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=64.43 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
+...+..++..+...|++++|+..++++++..|. ++.++..++.+|...|++++|...++++.+. .|+ ...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4678889999999999999999999999999887 8999999999999999999999999999874 674 66777777
Q ss_pred hhhhcC
Q 001966 970 KGENSG 975 (989)
Q Consensus 970 ~~~~~~ 975 (989)
..+...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00045 Score=67.96 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=77.8
Q ss_pred CHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CC
Q 001966 837 NRSEVFVVFEEMLGKGIEPDN---FTYYVMIDAHCKE-----GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-EE 907 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 907 (989)
...+|...++++++ ++|+. ..|..++..|... |+.++|.++|+++++.++.-+..++...++.++.. |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 35777888888888 88872 3677777777773 88888888888888877654578888888888884 88
Q ss_pred HHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 908 YSEALRLLNEMGESGFR--LGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.++|.+.++++++..|. |+-.. ...+.-++|..+++++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHHHh
Confidence 88888888888888777 43222 2223345666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=65.81 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+..++..++.++...|++++|+..++++++..|. ++.+|..+|.+|...|++++|.+.++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555566666666666666666666666665555 555566666666666666666666665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00011 Score=80.99 Aligned_cols=124 Identities=6% Similarity=-0.074 Sum_probs=83.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CC-CCCCHH-HHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQR---NLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KG-IEPDNF-TYYV 862 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~~-~~~~ 862 (989)
+..+|++++|+.++++.++. -+.|+ ..+++.|+..|...|++++|..+++++++ .| -.|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776666541 11222 34677777777777787777777777665 12 233333 6777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|+.+|..+|++++|+.+++++++ .|+. ++ .....+..++...|++++|+.+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888774 3543 33 34556777778888888888888887653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.3e-05 Score=63.96 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=53.0
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 854 EPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 854 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
.|+. ..+..++.++...|++++|++.++++++.++. +..+|..++.+|...|++++|+..++++++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3543 36777888888888888888888888887765 677888888888888888888888888876643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.9e-05 Score=63.47 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAE-AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.+..+...|++++|++.++++++..+. +.. +|..++.++...|++++|+..++++++..|+ ++.++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------H
Confidence 445566677777777777777766544 566 7777777777777777777777777777665 4444421 4
Q ss_pred ChhHHHHHHHHH
Q 001966 942 VMDYAAKVLECM 953 (989)
Q Consensus 942 ~~~~A~~~~~~~ 953 (989)
.+.+|...+++.
T Consensus 76 ~~~~a~~~~~~~ 87 (99)
T 2kc7_A 76 MVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00037 Score=56.76 Aligned_cols=69 Identities=16% Similarity=0.012 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 890 ISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++..+..++.++...++ .++|..+++++++..|+ ++.+...+|..+...|++++|+..++++++. .|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 478888888888876555 78999999999999888 8999999999999999999999999998765 454
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=59.22 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=58.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhH
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFRLGFA-SCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISL 965 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 965 (989)
..+..+.+.|++++|+..++++++..|. ++. ++..+|.+|...|++++|.+.++++++. .|+ ...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 4677889999999999999999999988 888 9999999999999999999999999875 675 3344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0029 Score=65.32 Aligned_cols=144 Identities=9% Similarity=-0.023 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHH--HhcC---CHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh---cC-C----HHHHHHHHHHHH
Q 001966 819 KPATITYRSLLNGY--NRMG---NRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK---EG-N----VMEALKLKDLIF 884 (989)
Q Consensus 819 ~p~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~---~g-~----~~~A~~~~~~~~ 884 (989)
+.+...|...+++. ...+ ...+|..+|+++++ +.|+.. .+..+..++.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44445555554443 2222 34677778888877 777754 44433333321 11 0 111111222222
Q ss_pred --hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 885 --DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 885 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..+ +.++.+|..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.++++... .|..
T Consensus 269 a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 269 TLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp TCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred hcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 223 3478888888888888899999999999999987 46778888999999999999999999988764 6765
Q ss_pred hhHHHHH
Q 001966 963 ISLADIV 969 (989)
Q Consensus 963 ~~~~~l~ 969 (989)
.++....
T Consensus 344 ~t~~~~~ 350 (372)
T 3ly7_A 344 NTLYWIE 350 (372)
T ss_dssp HHHHHHH
T ss_pred ChHHHHh
Confidence 5544333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0031 Score=62.11 Aligned_cols=87 Identities=9% Similarity=-0.035 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhH
Q 001966 873 VMEALKLKDLIFDKRMPI-SAEAYKAIIKALCKR-----EEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDY 945 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 945 (989)
..+|...++++++.++.- +..+|..++..|.+. |+.++|.+.|+++++.+|.-+..++..+++.++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 578889999999876431 356899999999985 99999999999999999874589999999999885 99999
Q ss_pred HHHHHHHHHhCCCc
Q 001966 946 AAKVLECMASFGWV 959 (989)
Q Consensus 946 A~~~~~~~~~~~~~ 959 (989)
|.+.++++++....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999886444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=58.61 Aligned_cols=85 Identities=13% Similarity=-0.017 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCC-CccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESG-FRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
..+.+.|.+..+.++ ++..+...+++++.+.+ +.++++.+++++.+.. |.-+...++.|+.+|++.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555554443 35566666666666655 4446666666655554 321345556666666666666666666
Q ss_pred HHHHHhCCCccc
Q 001966 950 LECMASFGWVSN 961 (989)
Q Consensus 950 ~~~~~~~~~~p~ 961 (989)
++.+++. +|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 6666543 554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0017 Score=67.09 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 715 PLDGSVYNALLSGCC--KEE---KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
+.+...|...+.+.. ..+ +..+|+.+|+++++..|....++..+..+|... ...+.. +...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~-~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPL-DEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCC-CHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCC-chhh
Confidence 445555555554432 222 346788888888888887777776665555410 000000 1110
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK 869 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 869 (989)
... ...|.+....+ . ..+.+..+|..+...+...|++++|...+++++. ++|+...|..++..+.-
T Consensus 257 ~~~----------l~~a~~a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 257 LAA----------LNTEIDNIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHH----------HHHHHHHHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 000 11122211111 1 1244566666666666666777777777777777 55666666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.|++++|.+.|++++..+ |...+|...
T Consensus 323 ~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 777777777777777754 344454433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=71.16 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCccC---HHhHHHH
Q 001966 870 EGNVMEALKLKDLIFDK-----RMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGES-----GFRLG---FASCRTV 933 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l 933 (989)
.|++++|+.+++++++. |+. + ..+++.++.+|..+|++++|+.+++++++. +++ + ...++.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 35555555555555431 221 2 233555566666666666666666655532 322 3 3346677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 001966 934 ANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 934 ~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|.+|..+|++++|+.+++++++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 7777777777777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=57.25 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG---NVMEALKLKDLIFDKR-MPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
...+.+.|.+..+.| .++..+...+++++.+.+ +.++++.+++++.+.+ +.-+.+.++.++-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666677666643 367778888888888888 5668999998888865 31256778888888899999999999
Q ss_pred HHHHHHHCCCc
Q 001966 914 LLNEMGESGFR 924 (989)
Q Consensus 914 ~~~~~~~~~~~ 924 (989)
+++.+++..|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999988876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0028 Score=68.51 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=56.5
Q ss_pred cCCHhHHHHHHHHHHh---CCCCCCH---H-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHHHHH
Q 001966 835 MGNRSEVFVVFEEMLG---KGIEPDN---F-TYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYKAII 899 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~---~g~~p~~---~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~ 899 (989)
.|++++|+.++++.++ .-+.|+. . +++.|+.+|...|++++|+.+++++++ .|+. ++ ..++.|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHH
Confidence 4667777777776665 1223332 2 566777777777888888777777764 2332 33 3477788
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~ 920 (989)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.03 E-value=0.84 Score=53.35 Aligned_cols=308 Identities=10% Similarity=0.006 Sum_probs=144.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 001966 658 FCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--P-----LDGSVYNALLSGC 728 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 728 (989)
....|+.++++.++...+..+-..+ ...-..+.-+....|..+++..++.......- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666666666655443210112 22333344445556665667776666554311 0 0111112222222
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCH
Q 001966 729 CKEEK-LEQALELFRDMLEKGLAS--TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYT--TLINQYCKVQNM 803 (989)
Q Consensus 729 ~~~g~-~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~ 803 (989)
.-.|. -+++.+.+..++...... ..+-..|+..+.-.|+-+-...++..+.+.. +..... .+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 22232 245566666666543211 1222334444556666666666666655431 222222 233334466777
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATI-TY---RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~ 877 (989)
+.+..+++.+... .+.. -| ..++-+|+..|+......++..+.+ .++.. ....++-++...|+.+.+.
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~---d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS---DSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc---CCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 7777777777652 2322 22 2344456667776666667777765 22222 2222334444456666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HccCC-HHHHHHHHHHHHHCCCccCHH--hHHHHHHHHHhcCC-----hhHHH
Q 001966 878 KLKDLIFDKRMPISAEAYKAIIKAL--CKREE-YSEALRLLNEMGESGFRLGFA--SCRTVANDFLREGV-----MDYAA 947 (989)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~-~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~-----~~~A~ 947 (989)
++++.+.+.+ ++.+....+.++ .-.|+ ..+|+..+..+.... +.+.. +...|+.+.....+ ..+-+
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 6665555432 344433333333 33333 367777777775432 21211 23334444333322 22233
Q ss_pred HHHHHHHh-CCCcccchhHHHHHhhhhcCCCh
Q 001966 948 KVLECMAS-FGWVSNSISLADIVKGENSGVDL 978 (989)
Q Consensus 948 ~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 978 (989)
+.+.+... +.-.|+..+...++.+....|+.
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 33333322 22234456667777776666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.013 Score=63.60 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=45.0
Q ss_pred HHhcCCHhHHHHHHHHHHhC---CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH---HHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGK---GIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDK-----RMPISA---EAYK 896 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~~~~ 896 (989)
+...|++++|+.++++.++. -+.|++. ++..++.+|...|++++|+.+++++++. |+. ++ ..++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHHH
Confidence 34455666666666666541 1222221 4555556666666666666666655531 221 22 2344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 001966 897 AIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
.|+..|..+|++++|+.++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.004 Score=50.54 Aligned_cols=66 Identities=11% Similarity=-0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 858 FTYYVMIDAHCKEGN---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..+..++.++...++ .++|..+++++++.++. +..++..++..+.+.|++++|+..|+++++..|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 355555555543333 56666677776666655 6666666666677777777777777776666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0071 Score=50.49 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKR------MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
-+..++..+.+.|+++.|...++++++.. ..+...++..++.++.+.|++++|+.+++++++..|. +..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~ 83 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 34455566666666666666666655431 1124455666666666666666666666666666655 44443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.73 E-value=3.2e-06 Score=87.83 Aligned_cols=251 Identities=18% Similarity=0.161 Sum_probs=169.1
Q ss_pred cccccccchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcC
Q 001966 148 SDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFD 227 (989)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (989)
+......|.+|+.|++++.+.|++.+|++.|-++. |+..|..++....+.|.+++-+..+..+++ ...+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-----~~ke 115 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARK-----KARE 115 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTST-----TCCS
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----Hhcc
Confidence 34444578999999999999999999999886653 445677889999999999998887766554 3455
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC--------------
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG-------------- 293 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------- 293 (989)
+..=+.|+-+|.+.+++.+-.+++ -.||+.-...+.+-+...|.|+.|.-+|..+....
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred cccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 566678999999999987754433 23788888888888888899998888887654321
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001966 294 ------LVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQID 367 (989)
Q Consensus 294 ------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 367 (989)
-.-+..||..+-.+|...+.+.-|...--.++-..- -...++.-|-+.|-+++-..+++.-+.. -...
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGL-ERAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cchh
Confidence 123566888888888888887777665544443211 1224566677788888888888777632 1235
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC------ChhhHHHHHHHHHhcCChhHHH
Q 001966 368 LVIYNTLLKGFCKSGKMEKAREVLNEIIR-MGIEP------NSRTYTSLIQGYCRMRKMVSAF 423 (989)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~------~~~~~~~li~~~~~~g~~~~A~ 423 (989)
.-.|+.|.-.|+|- +.++-.+.++..-. .+++. +...|.-++-.|++-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66777777777765 33443333332211 12211 1234556666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.013 Score=63.61 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CC-CCCCHH-H
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQR---NLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KG-IEPDNF-T 859 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~~-~ 859 (989)
+..+..+|++++|+.++++..+. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| ..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678888888888888753 12233 34788888889999999999999988876 12 334443 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
++.|+..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.064 Score=64.55 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
..|++++|.++.+. ..+...|..++..+.+.|+++.|.+.|.++
T Consensus 664 ~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555554322 133445555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.017 Score=48.16 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC------CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESG------FRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.+..-+..++..+.+.|+++.|+..++++++.. ....+.++..|+.+|.+.|+++.|...++++.+ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 356677899999999999999999999998752 112577899999999999999999999999976 478643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.02 Score=48.46 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNVME---ALKLKDLIFDKR-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|...+-..+++++.+..+... ++.+++.+...+ +.-..+....++-++.+.|++++|++.++.+++..|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 344444444445544444333 444555444432 1112333444444455555555555555555544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.029 Score=47.47 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCC-CccCHHhHHHHHHHHHhcCChhHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE---ALRLLNEMGESG-FRLGFASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 946 (989)
.....+.+.|.+....+. ++..+-..+++++.+..+..+ ++.+++.+...+ |.-.-...+.|+.++++.|+|++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 345566777777766665 699999999999999987666 999999998876 422566789999999999999999
Q ss_pred HHHHHHHHhCCCcccch
Q 001966 947 AKVLECMASFGWVSNSI 963 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~~~ 963 (989)
++..+.+++. +|+..
T Consensus 94 ~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHh--CCCCH
Confidence 9999999875 88643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.18 Score=60.59 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=26.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4456666666554321 24566666666666666666666666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.17 E-value=3 Score=48.88 Aligned_cols=310 Identities=12% Similarity=-0.002 Sum_probs=164.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 001966 622 GLSKKLELREALGIFLELLEKGLVPDVD--TYNSLITSFCKICDVDKAFQLYEEMCEKGV-------EPNTLTYNVLIDG 692 (989)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 692 (989)
+....|+.++++.++...+..+-..+.. .-..+.-+....|..+++..++...+...- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 5667788888877776655422112222 233333445566666677777777664311 0112222333333
Q ss_pred HHhcCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC
Q 001966 693 FCKAGD-LTEPFQLFDEMTKRGVPLDGS----VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767 (989)
Q Consensus 693 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 767 (989)
+.-.|. -+++...+..+.... +.. .-.++...+.-.|+.+....++..+.+....+..-...++-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 333443 246667776666543 222 122334445567887777777777776433333333444455557788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDT-Y---TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
.+.+..+++.+... .++.. | .+++-+|+..|+.....++++.+... ...+......++-+....|+.+.+..
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888887753 23322 2 23455677888877666788888763 12233333344445556777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--C-------CHHHHHH
Q 001966 844 VFEEMLGKGIEPDNFTYYVMIDAHCKEGN-VMEALKLKDLIFDKRMPISAEAYKAIIKALCKR--E-------EYSEALR 913 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-------~~~~A~~ 913 (989)
+++.+.+.+ +|....-..++-+....|+ ..+|+..+..+.. .++..+-..-+.++..- | ++.+-++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 776665532 3433322233333444444 3678888888874 23544433333333222 2 3555555
Q ss_pred HHHHHHHC-CCccCHHhHHHHHHHHHhcCC
Q 001966 914 LLNEMGES-GFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 914 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.+.+.... ..+++......++......|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 55555543 222333444455555554543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.018 Score=49.70 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+|.++|.++|+.+++.+.+ =+.+|...|..-.++|+...|++++.+++..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 4555555555555444222 2444555555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.90 E-value=1.5e-05 Score=82.87 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 001966 190 LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVV 269 (989)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 269 (989)
+..|..|..+..+.+++.+|+..|- -..|+..|..+|.+.-+.|++++-+.++.-..+.. .+...=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHH
Confidence 3445566666666666655543211 22444555556666666666666665555444432 223333455
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001966 270 IGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLS 322 (989)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (989)
+-+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|.
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 555555555443222111 2344444444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.099 Score=45.25 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHhcCCHHHHHHHHHHHHhCC
Q 001966 821 ATITYRSLLNGYNRMGNR------SEVFVVFEEMLGKGIEPDNF----TYYVMI---DAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
|..+|-..+....+.|+. ++..+.|++++.. +.|+.. .|..+- -.+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555666 6666667766662 344321 122211 12234578899999999987664
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 888 MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
-.. +.+|...+.--.++|++..|.+++.+++..+|+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 443 7788888888889999999999999999988874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.27 Score=41.72 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 888 MPISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..|+..+-..+++++.+..+ ..+++.+++.+...+|.-.-..++.|+.++++.|+|++|++..+.+++. +|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34556666666666655543 3456666666665554323445566666666666666666666666543 5543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=4.9 Score=45.24 Aligned_cols=116 Identities=10% Similarity=-0.061 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 876 (989)
.+.+.|..++....+.. ..+.. .+..++......+...++...+.+... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777765432 12222 222333333334434555666665554 233433333333334456788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
...++.+..... .......++++++.+.|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887777654322 2456677777777778888888888877764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.2 Score=44.47 Aligned_cols=113 Identities=9% Similarity=0.016 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGK-GIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIFDKR--MPISAEAYKA 897 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 897 (989)
-+..+...|.++.|+-+...++.. +.+|+. .++..+++++...|+|..|...|+++++.. ..-+......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344455666666666666655441 122221 134445566666666666666666654321 1101100000
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
++ -....... .. .+ .+...-+.++.+|.+.|++++|+.+++.+
T Consensus 106 ~~----~~ss~p~s-------~~-~~-~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TG----NSASTPQS-------QC-LP-SEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------C-CC-CHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cc----ccCCCccc-------cc-cc-chHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00 00000000 00 01 13456677888888888888888877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=45.08 Aligned_cols=134 Identities=7% Similarity=-0.020 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHH-H
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPA-------TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNF-T 859 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~-~ 859 (989)
+..-+..+...|.++.|+-+.+.+... +..|+ ..++..++.++...|++..|...|++++.. ..-|... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344466778899999999888876542 12333 236678889999999999999999998761 1223222 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
...+.. ...... ......+.+....++.||.+.|++++|+.+++.+-... -.+.+-..||..|.
T Consensus 103 ~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 103 RPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLYK 166 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHCC
T ss_pred cccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHhc
Confidence 111100 000000 01123366788889999999999999999998754332 25777788887663
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.46 Score=43.05 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=76.0
Q ss_pred HHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCC
Q 001966 164 GYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRN 243 (989)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 243 (989)
.-.+.|+++.|.++...+ .+...|..|.......|+++.|...|.+... +..+.-.|.-.|+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCC
Confidence 346789999999988776 3577899999999999999999999998866 5566666777788
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 001966 244 AEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSM 289 (989)
Q Consensus 244 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 289 (989)
.+.-.++-+....+| -+|.....+.-.|++++++++|.+.
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 777666655555543 2455555666778888888777553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.71 E-value=1.6 Score=39.47 Aligned_cols=100 Identities=9% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|...|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34556666666665544 2456666666666666666666666665532 233344455555554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
.+-+.....| -++.....+...|++++++++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4333333322 123333344455666666665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.61 Score=40.16 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNV---MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|...+-..+++++.++.+. .+++.+++.+...++.-..+....++-++.+.|++++|+++.+.+++..|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4444444455555554432 244455555554333223344444455555555555555555555555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.89 Score=39.13 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 889 PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.|+..+-..+++++.+..+ ..+++.+++.+....|.-.-...+.|+.++++.|+|++|++..+.+++. +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4677777777777777664 4567777777777665434555677777888888888888888877764 6754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.39 Score=40.72 Aligned_cols=72 Identities=17% Similarity=0.065 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 853 IEPDNFTYYVMIDAHCKEGNV---MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 853 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
-.|...+-..+++++.+..+. .+++.+++.+.+.++.-..+.+..++-++.+.|++++|++..+.+++..|.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 345566666667777766553 457777777776554334566667777777777777777777777777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=2.6 Score=35.66 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 290 (989)
-.|..++..++..+.... .+..-||.+|--....-+.+-..+.++..-
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IG 66 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIG 66 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHG
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHh
Confidence 456677777777776654 455566666655544445555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.78 E-value=3.2 Score=44.86 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001966 662 CDVDKAFQLYEEMCEK-----GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTK 711 (989)
Q Consensus 662 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 711 (989)
|+++.|++.+..+.+. ...........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566666665544431 2233445555666666666666666665555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.26 Score=56.56 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+-+...|+++-|+++.++++...|. +..+|..|+.+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344455566666666665555555 5555666666666666666665555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=13 Score=41.72 Aligned_cols=330 Identities=13% Similarity=0.089 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
|.....+ .+.|+...+..+...+...-+ .....|..+...+ .....++...++.+-. +.+.....-...+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 4444443 356788777776655433211 1112333332222 1224555555444422 112222334445566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQL 670 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 670 (989)
.+++...+..+.. .+.+...-+....+....|+..+|......+-..|.. ....+. .+
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~----------------~l 142 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD----------------KL 142 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH----------------HH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHH----------------HH
Confidence 7777766654432 2345555566667777778777676665555444322 122233 34
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 671 YEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDG-SVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
|....+.|......++.-+ ......|+...|..+...+ +++. .....++.....-.++ ...... ..+
T Consensus 143 ~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~~~~~~---~~~ 210 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFART---TGA 210 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHHHH---SCC
T ss_pred HHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---HHHHhc---cCC
Confidence 4444444333222333333 4455667777776665533 2232 2223333333322222 221111 111
Q ss_pred CChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001966 750 ASTL---SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTY----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT 822 (989)
Q Consensus 750 ~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 822 (989)
+.. .+..-+.-+. ..+.+.|...+......... +.... ..++......+...++...+...... .++.
T Consensus 211 -~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~ 285 (618)
T 1qsa_A 211 -TDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQST 285 (618)
T ss_dssp -CHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCH
T ss_pred -ChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCCh
Confidence 111 1111122223 34789999999988754322 33222 22333333445356777777776553 3444
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
....-.+....+.|+++.|...|+.|.... .......+=++.++...|+.++|..+|+++.+
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444445567799999999999876511 11333455567888899999999999999875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.62 Score=53.46 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..-+..+...|+++-|+++.++++.. -| +..+|+.|+..|...|+++.|.-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344567788899999999999999875 68 5999999999999999999999877754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.38 E-value=15 Score=39.63 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH----HcCC
Q 001966 697 GDLTEPFQLFDEMTK-----RGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLC----ISNK 767 (989)
Q Consensus 697 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 767 (989)
|++++|++.+-.+.+ .+..........++..|...|+++...+.+.-+.........+...+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888887766654 2344567778888999999999998888777665544333344444444332 2232
Q ss_pred HHHH--HHHHHHHHH--CC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 001966 768 LQEA--HQLLDAMLE--EQ-VNPN---HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NLKPA---TITYRSLLNGYNR 834 (989)
Q Consensus 768 ~~~A--~~~~~~~~~--~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 834 (989)
.+.. ..+.+.+.. .| +.-. ......|+..|...|++.+|.+++..+... +..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111111110 11 1111 123356777888888888888888887653 22222 2356666777888
Q ss_pred cCCHhHHHHHHHHHHh----CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 835 MGNRSEVFVVFEEMLG----KGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~----~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.+++..|..+++++.. ....|+.. .+..++..+...++|.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888887642 11122222 344456777778888888888877764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.29 E-value=16 Score=38.27 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCChhhH--
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR-GVPL---DGSVYNALLSGCCKE-EKLEQALELFRDMLEKGLASTLSF-- 755 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~-- 755 (989)
......|...|.+.|+.++..+++.....- +..+ .......+++.+... +..+.-.++..+.++-.......|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888899988888888766431 0011 223455666666553 344555555555554222122222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 001966 756 ----NTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NLKPATIT 824 (989)
Q Consensus 756 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 824 (989)
..++..|...|++.+|..++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567778888888888888777774311111 134555566677778888887777766542 22233322
Q ss_pred H----HHHHHHHH-hcCCHhHHHHHHHHHHh
Q 001966 825 Y----RSLLNGYN-RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 825 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~ 850 (989)
. ..-+..+. ..+++.+|...|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 22223345 56778887777776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.90 E-value=14 Score=37.06 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=41.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001966 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKA---KRMDEARIYLVEMLRRGLKPNIHSFRA 548 (989)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (989)
++..+..+...|.+.|++.+|...|-.- -.-|...+..++.-+... |...++ +.. ...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf-~~R 193 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEF-FSR 193 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHH-HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHH-HHH
Confidence 5566677777777777777777665311 101234444444433333 332222 111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 001966 549 FILGYCMAGEMQTAGRFFNEML 570 (989)
Q Consensus 549 li~~~~~~g~~~~A~~~~~~~~ 570 (989)
.+-.|.-.|+...|..+|+...
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 2334455677777777776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.37 E-value=7.6 Score=32.94 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 842 (989)
.-.|..++..++..+.... .+..-||-.|--....-+=+-..+.++.+=+ -.| ...+|+....+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 3456667777777766643 2333444444332222233333333333221 111 12345555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 843 VVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..+-.+ ..+......-++.+..+|+.|+-.+++..++. +.+|+++....++.+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 544432 23444444455667777888888888777654 345678888888888888888888888888888777
Q ss_pred Cc
Q 001966 923 FR 924 (989)
Q Consensus 923 ~~ 924 (989)
.+
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.09 E-value=7.3 Score=48.17 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=91.2
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTT 233 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 233 (989)
++..-+.++++|...|++++|.+.|.++-. |+..+.... .... -...+..... ....-..-|.-
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~----~~~~~~~~~~-~~~~l~~YY~h 904 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR----EFQEIAEKYH-HQNLLSCYYLH 904 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH----HHHHHHHTTT-SCCSSHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc----cccccccccc-ccccHHHHHHH
Confidence 455567899999999999999999988742 221110000 0000 0111121000 01222344666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNV----ATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFS 309 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 309 (989)
++..+-+.|.++.+.++-...++.....+. ..|..+.+++...|+|++|...+-.+..... -..+...++..+|
T Consensus 905 v~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lc 982 (1139)
T 4fhn_B 905 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHH
Confidence 777788888888888887777664322221 2578888888999999999999988876543 3566777888888
Q ss_pred hcCChhH
Q 001966 310 AAKRLGD 316 (989)
Q Consensus 310 ~~g~~~~ 316 (989)
..|..++
T Consensus 983 e~~~~~~ 989 (1139)
T 4fhn_B 983 KQGKINQ 989 (1139)
T ss_dssp HHCCHHH
T ss_pred hCCChhh
Confidence 7776544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.88 E-value=29 Score=36.34 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---hhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS---TLSFNTLIEFLCIS-NKLQEAHQLLDAMLEEQVNPNHDTY- 790 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 790 (989)
......+...|.+.|+.++..+++.....--. +. ......+++.+... +..+.-.++..+.++-.-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45667788889999999988888877643211 11 22345566666553 4455555555555531101 11122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCCHH
Q 001966 791 -----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIEPDNF 858 (989)
Q Consensus 791 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~ 858 (989)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+.+... ..+.|++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578888899999999888888876311112 23455666778888999999988888765 22334443
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHccCCHHHHHHHHH-HHHHCCCccCHH
Q 001966 859 TYY----VMIDAHC-KEGNVMEALKLKDLIFDK-RMPISA---EAYKAIIKALCKREEYSEALRLLN-EMGESGFRLGFA 928 (989)
Q Consensus 859 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 928 (989)
... .-+..+. ..++|.+|...|-++.+. ....++ .....++-+-...++..+-..+.. +....-..|+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 222 2236666 788999998888777532 111111 112222222223333323222222 211111233444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.+..+..+ +..+++.+...+++..
T Consensus 258 ~l~~L~~a-~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEA-SHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHS
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 45555554 4556776666666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.28 E-value=5.1 Score=38.87 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.+.|.+++|++..+..++..|. |......++..+|-.|+++.|.+-++.+.+..|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44566666666666666666554 6666666666666666666666666666666544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.03 E-value=28 Score=35.26 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChhhHHHHHHHH
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL----NEIIRMGIEPNSRTYTSLIQGY 413 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~g~~~~~~~~~~li~~~ 413 (989)
++..-|.+++++++|.+++-.-.. .+.+.|....|.++- +.+.+.++++|......|+..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444556667777777666544332 133444444433332 3344455556655555555544
Q ss_pred HhcCChhH-HHHHHHHH----HhCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 414 CRMRKMVS-AFELLDEM----KKKN--LVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 414 ~~~g~~~~-A~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
.....-+- =..+.+++ .+.| ..-|......+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 43322110 01111111 1111 2234555666666777777777766665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=2.3 Score=45.14 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+..+...|++++|+..++.++...|- +...|..++.+|.+.|+..+|++.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444455555555555555444332 4445555555555555555555555443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.37 E-value=2.1 Score=46.13 Aligned_cols=66 Identities=11% Similarity=0.004 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHH---HHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 001966 190 LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVY---SYTTVIDAYFKVRNAEEGKRVFSEMGEK 257 (989)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 257 (989)
...+|.+++.|...+.++.|..+..+..- |....+|.. -+..+++.+.-++++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55678888888888888888888777632 111112211 2344567777888888888888887765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.37 E-value=6.6 Score=48.52 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=36.3
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 76 AHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 76 ~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...+..+..|-.|... ++.+.+.+|.++...|++++|..+|.++..
T Consensus 825 ~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred hhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3556677777777643 566779999999999999999999998654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=3.9 Score=43.31 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE-----EQVNPNHDT 789 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 789 (989)
.++..+...|++++++..+..++...|.+...+..++.++...|+..+|++.|++..+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666666666666666666666666666666666665532 355665543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.27 E-value=2.8 Score=40.65 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
..+.+.|++++|+......++..|. |......|...++-.|+|+.|.+.++...+. .|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhH
Confidence 3567899999999999999999998 9999999999999999999999999988664 676433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 989 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 2e-09
Identities = 51/371 (13%), Positives = 114/371 (30%), Gaps = 19/371 (5%)
Query: 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYL 531
N + L S +F+ +L + + P ++ S + + K + + I
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAIEH 89
Query: 532 VEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKE 591
R I + AG+M+ A + + L V
Sbjct: 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149
Query: 592 GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPD-VDT 650
+ + + + L + + E+ A+ F + + L P+ +D
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSN--LGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDA 205
Query: 651 YNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710
Y +L + D+A Y + + + L + + G + +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 711 KRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770
+ P Y L + ++ + +A + + L S N L ++E
Sbjct: 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 771 AHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQNMEKAKQLF---LEMQQRNLKPATITYR 826
A +L LE V P ++ L + + +++A + + + Y
Sbjct: 324 AVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD----AYS 377
Query: 827 SLLNGYNRMGN 837
++ N M +
Sbjct: 378 NMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 45/367 (12%), Positives = 104/367 (28%), Gaps = 13/367 (3%)
Query: 553 YCMAGEMQTAGRFFNEMLNSGLVPNDV-IYTSIVDGYCKEGNIAEAISKFRCMLARGILP 611
AG+ + A R ++ P++ + + + + + + + P
Sbjct: 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNP 64
Query: 612 E-VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQL 670
+ YS L N ++ +L+EA+ + L N
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 671 YEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK 730
+ + + E + P ++ L
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 731 EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTY 790
+ ++ A+ F + ++ L L + A + +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLSPNHAVVH 240
Query: 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850
L Y + ++ A + + Y +L N G+ +E + L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-AYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 851 KGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910
+ + + ++GN+ EA++L + P A A+ + L ++ + E
Sbjct: 300 L-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 911 ALRLLNE 917
AL E
Sbjct: 358 ALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-07
Identities = 56/392 (14%), Positives = 128/392 (32%), Gaps = 24/392 (6%)
Query: 520 KAKRMDEARIYLVEMLRRGLKPN---IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP 576
+A + A + +++ R +P+ + + I + + + F + P
Sbjct: 11 QAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSI--HFQCRRLDRSAHFSTLAIK--QNP 64
Query: 577 NDV-IYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGI 635
Y+++ + Y + G + EAI +R L ++ ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 636 FLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK 695
L + V + + + KA L + + ++ L F
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVFNA 181
Query: 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSF 755
G++ F++ P Y L + + ++A+ + L +
Sbjct: 182 QGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQNMEKAKQLFLEMQ 814
L + A +E + P+ D Y L N + ++ +A+ +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 815 QRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMI-DAHCKEGNV 873
+ + +L N GN E ++ + L + P+ + + ++G +
Sbjct: 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKL 355
Query: 874 MEALK-LKDLIFDKRMPISAEAYKAIIKALCK 904
EAL K+ I + P A+AY + L +
Sbjct: 356 QEALMHYKEAI--RISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 7e-04
Identities = 44/367 (11%), Positives = 101/367 (27%), Gaps = 49/367 (13%)
Query: 588 YCKEGNIAEAISKFRCMLARGILPE-VQTYSVLINGLSKKLELREALGIFLELLEKGLVP 646
+ G+ A + P+ +L + + L + ++ P
Sbjct: 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNP 64
Query: 647 D-VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705
+ Y++L + + + +A + Y + N+
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCIS 765
+ L + +A L + A +++ L
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWSNLGCVFNAQ 182
Query: 766 NKLQEAHQLLDAMLEEQVNPNH-DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824
++ A + + ++PN D Y L N + + ++A +L + A +
Sbjct: 183 GEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV- 239
Query: 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIF 884
+ +L Y G + A++L+
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRR----------------------------AIELQ---- 267
Query: 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944
P +AY + AL ++ +EA N S +AN +G ++
Sbjct: 268 ----PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIE 322
Query: 945 YAAKVLE 951
A ++
Sbjct: 323 EAVRLYR 329
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 722 NALLSGCCKEEKLEQALELFRDMLEKGLAST---LSFNTLIEFLCISNKLQEAHQLLDAM 778
A+L+ E L + + F+ G S + + ++ +++ LL+ +
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 779 LEEQVNPNH-DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830
L + D L +++ EKA + + Q +P + L
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 989 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.87 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.78 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.51 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.47 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.81 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-23 Score=229.05 Aligned_cols=381 Identities=13% Similarity=0.082 Sum_probs=281.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 001966 585 VDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664 (989)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 664 (989)
...+.+.|++++|++.++++++.. +-+...+..+...+.+.|++++|+..++++++..+. +..++..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344556666666666666666542 234556666666666777777777777766665433 456666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
++|+..+....+... .+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 777777777766532 244444444444555555666655555554442 334455555566666778888888888888
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 824 (989)
....+.....+..++..+...|++++|...+++.++.. +.+...+..++..+...|++++|+..+++....+ +.+...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 88877777788888888888888888888888887653 2256778888888888888888888888887743 445667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+..++..+...|++++|+..|+++++ +.|+.. ++..++.++...|++++|++.++.+....+. +...+..++.++.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHH
Confidence 78888888888999999999998888 778654 7778888888889999999999888877654 7888888888899
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+.|++++|+..++++++..|+ ++.++..+|.+|...|++++|++.++++++. .|+ ...+..++..+.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998888877 7888888999999999999999999988764 785 6778888888877664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.6e-23 Score=225.15 Aligned_cols=382 Identities=14% Similarity=0.070 Sum_probs=290.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL 629 (989)
Q Consensus 550 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 629 (989)
...+.+.|++++|.+.++++++.. +.+..++..+...|.+.|++++|+..|++.++.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344555566666666666665543 2344556666666666666666666666666542 23456666667777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM 709 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 709 (989)
++|+..+......... +..............+....+............ ................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 7777777776665433 333334444444455555555555555444332 24444445555666777888888888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 710 TKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 710 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
.... +.+...+..+...+...|++++|...+++.++..|.+..++..++..+...|++++|...+++..... ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7653 55778888888899999999999999999999888888889999999999999999999999988753 336677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 868 (989)
+..++..+.+.|++++|+..|++..+.. +.+..++..++..+...|++++|...++.+.. ..|+. ..+..++.++.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHH
Confidence 8888999999999999999999998842 33467899999999999999999999999988 56654 47888889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
..|++++|++.++++++..|. +..++..++.+|.+.|++++|+..|+++++..|+ ++.+|..||.+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 999999999999999998766 8899999999999999999999999999999988 89999999999998886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.5e-16 Score=162.27 Aligned_cols=266 Identities=14% Similarity=0.024 Sum_probs=171.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
....+.+.|++++|+..|+++.+.+ |.+..+|..++.++...|++++|+..|+++++..|.+...+..++..|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 3444556666666666666666553 445556666666666666666666666666666665556666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
++|.+.++++... .|+............ ...+.......+..+...+.+.+|...+.++
T Consensus 104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRY--TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHh--ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 6666666665543 121110000000000 0000001111122334456678888888888
Q ss_pred HhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 849 LGKGIEP---DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 849 ~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
++ +.| +...+..++..+...|++++|+..+++++...+. +..+|..++.++...|++++|++.++++++..|.
T Consensus 163 l~--~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 163 VR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HH--HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 87 444 3456777888888999999999999999887765 7888999999999999999999999999988877
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc------------hhHHHHHhhhhcCCChhhHH
Q 001966 926 GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS------------ISLADIVKGENSGVDLDESK 982 (989)
Q Consensus 926 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~~l~~~~~~~g~~~~a~ 982 (989)
++.++..+|.+|.+.|++++|++.|+++++. .|+. ..|..+...+...|+.+.+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999999999999999999988763 4532 13344555555556655444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.1e-15 Score=158.84 Aligned_cols=271 Identities=13% Similarity=0.031 Sum_probs=206.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 653 SLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE 732 (989)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 732 (989)
.....+.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...|++..+.. |.+...+..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45566889999999999999999874 2368899999999999999999999999998864 667899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
++++|++.++.+....+............... .+.......+..+...+.+.+|.+.|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGG--------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhh--------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 99999999999998877433322111110000 0001111112233445667888888888
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 813 MQQRN-LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 813 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
..+.. -.++..++..++..+...|++++|+..+++++. ..|+.. .|..++.++...|++++|++.++++++..+.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 77632 123467888899999999999999999999998 778655 7888999999999999999999999988765
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH-----------HhHHHHHHHHHhcCChhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF-----------ASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
+..+|..++.+|.+.|++++|+..|+++++..|+ +. .+|..+..++...|+.+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-ChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889999999999999999999999999987654 32 2455566677767776655433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-12 Score=132.05 Aligned_cols=232 Identities=13% Similarity=0.083 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK-LQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
..+++.+...+.+.+.+++|+++++++++.+|.+..+|+..+.++...|+ +++|+..++++++... -+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 45666677778888888999999999999998888888888888888764 8999999998887532 367888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC---
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN--- 872 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~--- 872 (989)
+.+.|++++|++.++++.+.. +.+..+|..++..+...|++++|+..++++++ ++|++. .|..++.++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence 888999999999999988842 44577888888889899999999999999988 788554 77777777666554
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhc--CChhHH
Q 001966 873 ---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLRE--GVMDYA 946 (989)
Q Consensus 873 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~~~A 946 (989)
+++|++.++++++..|. +..+|..++..+...| .+++.+.++++.+..+.+ ++..+..++.+|... ++.+.+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 57888888888888766 7888888877665544 577888888887766553 355566677776543 555667
Q ss_pred HHHHHHHHh
Q 001966 947 AKVLECMAS 955 (989)
Q Consensus 947 ~~~~~~~~~ 955 (989)
...++++.+
T Consensus 277 ~~~~~ka~~ 285 (315)
T d2h6fa1 277 EDILNKALE 285 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776766643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.9e-12 Score=130.04 Aligned_cols=214 Identities=7% Similarity=0.045 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEF 761 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 761 (989)
...++.+...+.+.+.+++|+++++++++.+ |-+..+|+....++...| ++++|+..++.+++.+|.+..+|..++..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3456666677778888888888888888874 667788888888877765 58888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 001966 762 LCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN---- 837 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 837 (989)
+...|++++|++.++++++.. +.+...|..++..+...|++++|++.++++++.+ +.+...|+.++..+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 888888888888888888753 2367788888888888888888888888888843 3356678877777766655
Q ss_pred --HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 001966 838 --RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-SAEAYKAIIKAL 902 (989)
Q Consensus 838 --~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 902 (989)
+++|+..+.++++ +.|++. .|..+...+. ....+++.+.++.+.+..+.+ +...+..++..|
T Consensus 200 ~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 5788888888888 778655 5666665544 344677788887777654432 344455554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=2.3e-12 Score=135.52 Aligned_cols=263 Identities=7% Similarity=-0.066 Sum_probs=187.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSG----------CCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 767 (989)
..++|+++++.+.+.+ |.+...|+..... +...|.+++|+.+++.+++.+|.+...+..++.++...++
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 3466677777666643 3344445433222 2233457788888888888888888888888877777654
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 001966 768 --LQEAHQLLDAMLEEQVNPNHDTY-TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVV 844 (989)
Q Consensus 768 --~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 844 (989)
+++|+..++++++... ++...+ ......+...|++++|+..++++.+.+ +-+..+|..++.++...|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7888888888887532 244444 344566777888888998888888743 34567888888888888888888777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 845 FEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 845 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+++..+ +.|+.. .....+...+..+++...+...+...+. +...+..++..+...|+.++|...+.+.++.+|.
T Consensus 201 ~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 776665 444332 2233445567778888888888877644 5666777788888888999999999988888877
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 925 LGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 925 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
+..++..+|.+|...|++++|.+.++++++. .|+ ...|..+...+
T Consensus 275 -~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 275 -CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKF 320 (334)
T ss_dssp -HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHH
Confidence 7888888999999999999999999988764 785 44555554444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.8e-10 Score=119.71 Aligned_cols=293 Identities=12% Similarity=0.028 Sum_probs=190.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----ChhhHHHH
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLD-----GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--A----STLSFNTL 758 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l 758 (989)
...+...|++++|++++++..+.. +.+ ..++..+...+...|++++|+..|+++++..+ + ...++..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 444566677777777777666542 222 23455566677777777777777777665332 1 12345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLE----EQVNPN---HDTYTTLINQYCKVQNMEKAKQLFLEMQQR----NLKPATITYRS 827 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ 827 (989)
...+...|++.++...+.+... .+.... ...+..+...+...|+++.|...+...... +......++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6677778888888877776653 111111 234556677788888888888888877653 11222445666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHh--CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLG--KGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI---SAEAYKAI 898 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 898 (989)
....+...|+..++...+.+... ....... ..+..++..+...|++++|...+++..+..+.. ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 77778888888888888877765 1111111 134455677888899999999998887654332 23456678
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC----CCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCcc----cchhH
Q 001966 899 IKALCKREEYSEALRLLNEMGES----GFRL-GFASCRTVANDFLREGVMDYAAKVLECMASF----GWVS----NSISL 965 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~ 965 (989)
+.++...|++++|...+++++.. +..| ...++..++.+|...|++++|.+.++++++. |... ....+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88899999999999999888643 2222 3567888999999999999999999887653 1111 12334
Q ss_pred HHHHhhhhcCCChhhHHH
Q 001966 966 ADIVKGENSGVDLDESKD 983 (989)
Q Consensus 966 ~~l~~~~~~~g~~~~a~~ 983 (989)
..+...+...|..+++++
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 555566666676666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=8.5e-12 Score=131.04 Aligned_cols=265 Identities=9% Similarity=0.021 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH----------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 664 VDKAFQLYEEMCEKGVEPN-TLTYNVLIDG----------FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE 732 (989)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~-~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 732 (989)
.++|+++++..++. .|+ ...|+..-.. +...|.+++|+.+++...+.+ |.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 35666666666654 233 2233322222 233455788999999988864 667888888877777655
Q ss_pred --CHHHHHHHHHHHHHcCCCChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 733 --KLEQALELFRDMLEKGLASTLSFN-TLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 733 --~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
++++|+..++++++..+.....+. ..+..+...+.+++|+..++++++... -+...|..+...+.+.|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 589999999999999887777654 455777788999999999999987643 3778899999999999999988776
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001966 810 FLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 888 (989)
++...+ +.|+. ......+...+..+++...+...+. ..|+.. .+..++..+...|++++|+..+.+..+.++
T Consensus 201 ~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 201 GRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 665544 22222 2233445667888899999999988 566544 666677888888999999999999998775
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 889 PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
. +..+|..++.++...|++++|++.++++++..|. +...|..|+..+....
T Consensus 274 ~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~~e~ 324 (334)
T d1dcea1 274 W-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLEN 324 (334)
T ss_dssp H-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHhHhh
Confidence 5 7788999999999999999999999999999887 7788888887776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=7.7e-11 Score=118.54 Aligned_cols=222 Identities=9% Similarity=-0.055 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 734 LEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
.+.++.-+++.+.... ....++..++.+|.+.|++++|+..|++.++.. +.+..+|..++.+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555554432 122355666777777777777777777777642 22566677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001966 810 FLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 888 (989)
|++..+.. +.+..++..++.++...|++++|...+++.++ +.|+.. ....+...+.+.+..+.+..+.........
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 77777632 22355677777777777777777777777777 556433 333334444455555555554444444322
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 889 PISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.+. .+. +...+.. .+..+.+...+.......+. ...++..+|.+|...|++++|.+.|+++++. .|+...
T Consensus 171 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 244 (259)
T d1xnfa_ 171 EQW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFV 244 (259)
T ss_dssp CST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCH
T ss_pred hhh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHH
Confidence 211 111 1111211 12233333333333333333 3556777888888888888888888888654 665433
Q ss_pred H
Q 001966 965 L 965 (989)
Q Consensus 965 ~ 965 (989)
.
T Consensus 245 ~ 245 (259)
T d1xnfa_ 245 E 245 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1e-09 Score=116.30 Aligned_cols=265 Identities=12% Similarity=0.012 Sum_probs=202.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLAS-----TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPN----HDTYTT 792 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ 792 (989)
.....+...|++++|+.++++.++..+.+ ..++..++..+...|++++|+..+++..+... .++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34566778999999999999999987733 24677788999999999999999999874211 112 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--C--CHHHHH
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQR----NLKPA---TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE--P--DNFTYY 861 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p--~~~~~~ 861 (989)
+...+...|++..|...+.+.... ..... ...+..++..+...|+++.+...+.+....... + ....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 778889999999999998887541 11111 235677888899999999999999999872111 1 122455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDK--RMPIS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRT 932 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 932 (989)
.+...+...|++.++...+.++... ..... ...+..++..+...|++++|...+++..+..+..+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5668888899999999998887653 11111 23566778889999999999999999887655422 445678
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh----CCCccc-chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 933 VANDFLREGVMDYAAKVLECMAS----FGWVSN-SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
++.++...|++++|...+++++. .+..|+ ...+..++..+...|++++|.+.+++
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999998863 355665 56789999999999999999998875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.6e-10 Score=116.13 Aligned_cols=200 Identities=10% Similarity=-0.047 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.++..++..|.+.|++++|++.|+++++..|.+..++..++.++.+.|++++|+..|+++++... .+..++..++.+|.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 35556667777777777777777777777777777777777777777777777777777776432 24456667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVM 874 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~ 874 (989)
..|++++|++.|++..+.. +.+......+..++.+.+..+.+..+...... ..+....+.. +..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc--cchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 7777777777777777632 33344444455555555555555555555554 2222222211 111111 11223
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+...+.......+. ...+|..++..+...|++++|++.|+++++..|+
T Consensus 193 ~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 193 RLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333332222221111 3456777888888888888888888888887765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=2.3e-09 Score=110.19 Aligned_cols=187 Identities=14% Similarity=0.010 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
+..++|..+|++.++...+.+...|...+..+...|++++|..+|+++.+........+|..++..+.+.|+.++|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999888654455667788888888899999999999999887432222457888899888999999999999
Q ss_pred HHHHhCCCCCCHH-HHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDA-HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
+++++ ..|... .|...+.. +...|+.+.|..+++++++..+. +...|...++.+...|+.++|+.+|+++++..+
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99988 555443 44444433 33468899999999999987655 788999999999999999999999999988765
Q ss_pred c-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 924 R-L--GFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 924 ~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
. | ....|..++..-...|+.+.+..+++++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1 234677888888888999999999998865
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=5.4e-09 Score=107.39 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN--FTYYVMIDAHCKEGNVMEALK 878 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~ 878 (989)
+..++|..+|++..+...+.+...|..++..+...|++++|..+|+++++ ..|.. ..|...+....+.|++++|.+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 35688999999988754455567888899999999999999999999998 66643 367888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKA-LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFG 957 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 957 (989)
+|+++++..+. +...|...+.. +...|+.+.|..+|+++++..|+ ++..|..++..+...|+.++|+.+|+++++..
T Consensus 156 i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999988765 66666666654 34568999999999999999887 89999999999999999999999999988753
Q ss_pred -Cccc--chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 958 -WVSN--SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 958 -~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..|+ ...|.........-|+.+.+.++.+++
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3443 246777777777789999999988875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.4e-09 Score=90.17 Aligned_cols=104 Identities=13% Similarity=-0.028 Sum_probs=77.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
-+..+.+.|++++|+..|+++++..|. ++.+|..++.++.+.|++++|+..++++++..|. ++.+|..+|.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 456677778888888888888777655 7777888888888888888888888888877777 77778888888888888
Q ss_pred hhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 943 MDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 943 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
+++|+..++++++. .|+ ...+..+.+
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888877653 664 444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=5.2e-09 Score=89.05 Aligned_cols=107 Identities=19% Similarity=0.117 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..+...|++++|+..|+++++ ..|+.. .|..++.++...|++++|+..++++++.++. +..+|..++.++...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHc
Confidence 346677888999999999999988 778655 7888889999999999999999999988766 888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
|++++|+..++++++..|. ++.++..++.+-
T Consensus 85 ~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence 9999999999999998888 787777776653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.5e-08 Score=95.03 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=59.0
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
+...|++++|++.|.++ ..|+..+|..++.++...|++++|++.|+++++.++. ++.+|..++.++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 44445555555544432 2233344445555555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHCCCc--------------c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 912 LRLLNEMGESGFR--------------L-GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 912 ~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++.|+++++..+. + ...++..++.+|.+.|++++|.+.++++++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555554432111 0 1234555566666666666666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.2e-08 Score=92.70 Aligned_cols=126 Identities=13% Similarity=0.006 Sum_probs=105.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN 872 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 872 (989)
+..+...|++++|++.|+++ .+|+..+|..++.+|...|++++|+..|+++++ ++|+.. .|..++.++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhcc
Confidence 45567889999999998764 367788889999999999999999999999999 888665 88889999999999
Q ss_pred HHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 873 VMEALKLKDLIFDKRMPI---------------SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
+++|++.|++++...... ..+++..++.++.+.|++++|.+.++++++..+++
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999987642210 13678889999999999999999999999887763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.6e-08 Score=91.84 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
...+..|.+.|++++|+..|+++++ +.|+.. .|..++.++...|++++|+..++++++.++. +..+|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 3445667788888888888888888 777655 7777888888888888888888888887765 77888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH--HhcCChhHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDF--LREGVMDYAAKV 949 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 949 (989)
.|++++|+..++++++..|. ++.++..+..+. ...+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888777 677766665553 333445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=3.7e-09 Score=101.02 Aligned_cols=120 Identities=14% Similarity=-0.032 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.|+...+...+..+.+.|++++|+..|+++++ +.|+.. .|..++.+|.+.|++++|+..++++++.+|. +..+|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHH
Confidence 36777788888889999999999999999888 778655 7778888899999999999999999887765 7888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.+|.+.|++++|+..|+++++..|+ +...+...+..+...++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877654 33333334444444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=2.7e-08 Score=100.92 Aligned_cols=195 Identities=10% Similarity=-0.001 Sum_probs=111.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR----NL-KPATITYRSL 828 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l 828 (989)
+..|...|++++|.+.|.++.+. +-.+ ...+|..++.+|.+.|++++|++.+++..+. +. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 33455555555555555555431 1111 1235666666677777777777776665441 10 0112345556
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHH
Q 001966 829 LNGYNR-MGNRSEVFVVFEEMLGK----GIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS------AEAYK 896 (989)
Q Consensus 829 ~~~~~~-~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 896 (989)
+..|.. .|++++|+..|+++++. +..+.. .++..++..+...|++++|++.|+++....+... ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 666643 57888888888877651 111111 2466677888888888888888888776533311 12345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCcc-C---HHhHHHHHHHHHh--cCChhHHHHHHHHH
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFRL-G---FASCRTVANDFLR--EGVMDYAAKVLECM 953 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 953 (989)
..+.++...|+++.|...++++.+..|.. + ......++.++.. .+.+++|+..|+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56666777888888888888877765431 1 2233455555554 24567777777655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=3.2e-08 Score=100.34 Aligned_cols=195 Identities=14% Similarity=0.046 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C----H
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---D----N 857 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~ 857 (989)
|...++.|...|++++|.+.|.+..+. +-+++ ..+|..++.+|.+.|++++|+..+++.++ +.+ + .
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 117 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH--HhhhcccchhHH
Confidence 334467788999999999999998762 21222 35789999999999999999999999887 222 1 1
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-----
Q 001966 858 FTYYVMIDAHCK-EGNVMEALKLKDLIFDK----RMPI-SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG----- 926 (989)
Q Consensus 858 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 926 (989)
.++..++..+.. .|++++|++.++++.+. +.++ ...++..++..+...|++++|+..+++++...+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 245566677755 69999999999998754 1111 134588899999999999999999999998765521
Q ss_pred -HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc---c---hhHHHHHhhhhc--CCChhhHHHHHhhh
Q 001966 927 -FASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---S---ISLADIVKGENS--GVDLDESKDLMKQT 988 (989)
Q Consensus 927 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~---~~~~~l~~~~~~--~g~~~~a~~~~~~~ 988 (989)
...+...+.++...|++..|.+.++++.+. .|. . .....++..+.. .+.+.+|.+.++++
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 234567788888999999999999998654 453 1 233455555543 45678888776543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.8e-08 Score=91.44 Aligned_cols=120 Identities=13% Similarity=-0.004 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+...+..+.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..|+++++..|. +..+|..+|.+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 334567889999999999999999999877 9999999999999999999999999999999988 99999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCccc-chhHHHHHhh--hhcCCChhhHHH
Q 001966 940 EGVMDYAAKVLECMASFGWVSN-SISLADIVKG--ENSGVDLDESKD 983 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~ 983 (989)
.|++++|...++++... .|+ ...+..+... ....+.+++|..
T Consensus 91 ~g~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999875 675 4455444433 233444555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.80 E-value=5.1e-06 Score=82.48 Aligned_cols=225 Identities=15% Similarity=0.060 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
+..+..+...+.+.+++++|+++|++..+.+ +..++..|+..|.. ..++..|...++.....+ +......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 4455555666666667777777777666654 44555556666655 456677777776666543 33333444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 794 INQYCK----VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN----RMGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865 (989)
Q Consensus 794 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 865 (989)
...+.. .++.+.|...++...+.|. ......++..+. .......+...+.+... ..+...+..|+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhh
Confidence 433332 4566777777777766442 122222222222 24456677777777665 234556666776
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 866 AHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 866 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
.+.. ..+...+...++.+.+.+ +..+...++..+.. ..++++|+..|+++.+.+ ++.++..||..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 6664 456778888888887754 67778888877765 568999999999988876 677888899888
Q ss_pred Hh----cCChhHHHHHHHHHHhCCCc
Q 001966 938 LR----EGVMDYAAKVLECMASFGWV 959 (989)
Q Consensus 938 ~~----~g~~~~A~~~~~~~~~~~~~ 959 (989)
.. ..++++|.++|+++.+.|..
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 86 44788899999988776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=7.7e-09 Score=98.76 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 785 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
|+...+...++.|.+.|++++|+..|++.++.. +.+..+|..++.+|.+.|++++|+..|+++++ +.|+.. +|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 677778888999999999999999999998853 45677899999999999999999999999998 889765 88999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
+.++...|++++|+..++++++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.78 E-value=1.6e-08 Score=84.97 Aligned_cols=93 Identities=17% Similarity=0.038 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++..+.+.|++++|+..++++++.+|. +..+|..++.++.+.|++++|+..++++++..|+ ++.++..+|.+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 445667778888888888888888887766 7888888888888888888888888888888877 78888888888888
Q ss_pred cCChhHHHHHHHHHH
Q 001966 940 EGVMDYAAKVLECMA 954 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~ 954 (989)
.|++++|.+.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888887753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.8e-08 Score=84.43 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCccC-HHhHHHHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESGFRLG-FASCRTVANDF 937 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 937 (989)
.+++.+...+++++|.+.|++++..++. ++.++..++.++.+.+ ++++|+.+++++++..+.|+ ..+++.||.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3445555566666666666666665544 6666666666665533 33456666666665554433 23566666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCccc
Q 001966 938 LREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 938 ~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.+.|++++|++.++++++. .|+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhhhHHHHHHHHHHHHh--CcC
Confidence 6666666666666666553 554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.66 E-value=4.1e-05 Score=75.65 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 684 LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK----EEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 684 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...++.....+. ..+...++
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~--~~a~~~l~ 77 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY--SNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc--cchhhccc
Confidence 344445555555666666666666666554 44555555555554 4466666666666665542 23333444
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 760 EFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC----KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 760 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
..+.. ..+.+.|...++...+.|. ......+...+. .......|...+..... ..+...+..|+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhh
Confidence 43332 3466667777776665532 222222222222 23456666677666655 3455666677777
Q ss_pred HHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 832 YNR----MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 832 ~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+.. ..+...+...++...+.| +..+...++..+.. ..++++|+.+|+++.+.| ++.++..|+.+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 664 456777888888877743 55667777766665 568999999999999876 6778888988887
Q ss_pred c----cCCHHHHHHHHHHHHHCCCc
Q 001966 904 K----REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 904 ~----~g~~~~A~~~~~~~~~~~~~ 924 (989)
. ..+.++|.+.|+++.+.+..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5 44899999999999988854
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.1e-07 Score=84.94 Aligned_cols=85 Identities=9% Similarity=-0.108 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
+|..++.+|.+.|++++|+..++++++.+|. +..+|..++.+|...|++++|+..|+++++..|+ ++.+...++.+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4566777788888888888888888887765 7888888888888888888888888888888877 7777777777766
Q ss_pred hcCChhH
Q 001966 939 REGVMDY 945 (989)
Q Consensus 939 ~~g~~~~ 945 (989)
..+...+
T Consensus 142 ~~~~~~~ 148 (170)
T d1p5qa1 142 RIRRQLA 148 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.3e-08 Score=82.65 Aligned_cols=109 Identities=9% Similarity=-0.000 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGN---VMEALKLKDLIFDKRMPIS-AEAYKAIIK 900 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 900 (989)
..+++.+...+++++|.+.|++.+. +.|+. .++..++.++.+.++ +++|+++++++++.++.|+ ..+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4678888999999999999999999 88866 488999999987554 5679999999998765544 358899999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
+|.+.|++++|++.|+++++..|+ +..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQ-NNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 999999999999999999999988 777665555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=1.4e-07 Score=79.11 Aligned_cols=91 Identities=12% Similarity=-0.009 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..+.+.|++++|+..|+++++ ..|+.. .|..++.++.+.|++++|+..++++++.+|. +..+|..++.+|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 3456677888888888888888888 777644 7788888888888888888888888888766 78888888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 001966 905 REEYSEALRLLNEMG 919 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~ 919 (989)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888888754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.8e-07 Score=84.13 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 971 (989)
.+|..++.+|.+.|++++|+..++++++..|. ++.++..+|.+|...|++++|+..|+++++. .|+ ......+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45778999999999999999999999999988 9999999999999999999999999999874 785 5556566665
Q ss_pred hhcCCChhh
Q 001966 972 ENSGVDLDE 980 (989)
Q Consensus 972 ~~~~g~~~~ 980 (989)
....+...+
T Consensus 140 ~~~~~~~~~ 148 (170)
T d1p5qa1 140 QQRIRRQLA 148 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.5e-08 Score=109.58 Aligned_cols=114 Identities=7% Similarity=-0.065 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
...+..++..+.+.|+.++|...+++.+. ..| ..++..++.++...|++++|+..|+++++..|. +...|+.++..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 34455555555666666666665555544 222 124555556666666666666666666665544 55566666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+...|+..+|+..|.+++...++ .+.++..|+..+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHh
Confidence 66666666666666666655543 555565655555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.5e-07 Score=79.76 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-------HHhHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG-------FASCRT 932 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~ 932 (989)
+..++..+...|++++|++.|+++++.++. +..++..++.+|.+.|++++|+..++++++..|+ + ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 445677788888888888888888887765 7778888888888888888888888888776544 2 235667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 933 VANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
+|.++...+++++|+..+++.+.. .|+.+..
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 777788888888888888877653 4554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.51 E-value=4.9e-07 Score=80.79 Aligned_cols=72 Identities=10% Similarity=-0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTV 933 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 933 (989)
+..++.+|.+.|++++|++.++++++.+|. +..+|..++.++...|++++|+..|+++++..|. +..+...+
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 334444444445555555555554444433 4444445555555555555555555554444444 44443333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=7.2e-07 Score=81.44 Aligned_cols=80 Identities=13% Similarity=-0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++.++.+.|++++|+..++++++.++. +..+|..++.++...|++++|+..|+++++..|+ +..+...+..+..
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4455556666666666666666666665544 5666666666666666666666666666666655 5555555555444
Q ss_pred hc
Q 001966 939 RE 940 (989)
Q Consensus 939 ~~ 940 (989)
+.
T Consensus 157 ~l 158 (169)
T d1ihga1 157 KI 158 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.1e-08 Score=108.76 Aligned_cols=267 Identities=9% Similarity=-0.030 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 666 KAFQLYEEMCEKGVEPN-TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDG-SVYNALLSGCCKEEKLEQALELFRD 743 (989)
Q Consensus 666 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 743 (989)
+|.+.|++..+. .|+ ...+..+..++...|++++| +++++..+ |+. ...+...... ...+..+++.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 677888888764 333 33455566777777777766 66665532 211 1111111111 1124566777777
Q ss_pred HHHcCC-CChhhHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 744 MLEKGL-ASTLSFN--TLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 744 ~~~~~~-~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
..+... ++..... .+.......+.++.++..+++..... .++...+..+...+.+.|+.++|...+++.... .|
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH
Confidence 765543 2222211 12222333455666665555544321 224566777888888999999999888776651 12
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
..++..++..+...|++++|...|+++++ +.|+.. .|+.|+.++...|+..+|+..|.+++...+ |.+.++..|+
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~ 227 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence 34778889999999999999999999999 889776 888999999999999999999999998864 4888888887
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLG-FASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
..+.+..+..++.+ .....+. ...+..+...++..+..+...++.+++.
T Consensus 228 ~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 228 KALSKALESRDEVK------TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHHHTTSCCCCC------SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHHHhhhhhhhhc------cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 76654332211100 0000011 2234556666677777777666665553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.43 E-value=1.4e-06 Score=79.26 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.|..++.++.+.|++++|+..++++++.++. +..+|..++.++...|++++|+..|+++++..|+ ++.+...++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3555677777888888888888888877655 7778888888888888888888888888888777 7777777777666
Q ss_pred hcCChh-HHHHHHHHHH
Q 001966 939 REGVMD-YAAKVLECMA 954 (989)
Q Consensus 939 ~~g~~~-~A~~~~~~~~ 954 (989)
..+... ...+.+.+|.
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 655443 3444544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.36 E-value=3e-06 Score=75.41 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLADI 968 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 968 (989)
.+|..++.+|.+.|++++|+..++++++.+|. +..+|..+|.+|...|++++|+..|+++++. .|+. .+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 46778999999999999999999999999988 9999999999999999999999999999874 7864 444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.32 E-value=8.8e-07 Score=77.99 Aligned_cols=97 Identities=9% Similarity=-0.090 Sum_probs=48.7
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 835 MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE----------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
.+.+++|+..|+++++ ++|++. .+..++.++... +.+++|++.|+++++.+|. +..+|..++.+|.
T Consensus 10 ~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 3445555555555555 455433 444444444322 2335555555555555544 5555555555554
Q ss_pred ccCC-----------HHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 904 KREE-----------YSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 904 ~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
..|+ +++|.+.|+++++..|. +...+..|+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~ 128 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEM 128 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHH
Confidence 4432 45555666666655554 4444444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.31 E-value=2.9e-06 Score=77.04 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 971 (989)
.+|..++.+|.+.|++++|+..++++++..|. +..+|..+|.+|...|++++|...++++++. .|+ ..+...+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 35777899999999999999999999999988 9999999999999999999999999999874 785 5555555555
Q ss_pred hhcCCChhh-HHHHHhh
Q 001966 972 ENSGVDLDE-SKDLMKQ 987 (989)
Q Consensus 972 ~~~~g~~~~-a~~~~~~ 987 (989)
....+...+ ..+.+++
T Consensus 142 ~~~~~~~~e~~kk~~~~ 158 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYAN 158 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 544443332 3344333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.30 E-value=3.9e-07 Score=80.33 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=88.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR----------EEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
+.+.+.+++|++.|+++++.+|. ++.++..++.++... +.+++|+..++++++.+|+ ++.+|+.+|.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 45667899999999999999877 999999999998754 4568999999999999998 99999999999
Q ss_pred HHhcCC-----------hhHHHHHHHHHHhCCCcccchh-HHHHHhhhhcCCChhhH
Q 001966 937 FLREGV-----------MDYAAKVLECMASFGWVSNSIS-LADIVKGENSGVDLDES 981 (989)
Q Consensus 937 ~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a 981 (989)
|...|+ +++|.+.|+++++. .|+... +..|.......+.+.++
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 68899999999774 887544 45555554444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.1e-06 Score=72.65 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-----HHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-S-----AEAYK 896 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-----~~~~~ 896 (989)
.+..++..+...|++++|+..|+++++ +.|+.. .+..++.++.+.|++++|++.++++++.++.. . ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345567777777888888888888877 667544 66677788888888888888888877643221 1 23566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.++..+...+++++|+..+++.+...+.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7777778888888888888887766533
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=4e-06 Score=76.30 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...|..++.++.+.|++++|+..++++++ +.|+.. +|..++.++...|++++|++.|+++++..+. +..++..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45778899999999999999999999999 888766 8999999999999999999999999998766 8888887776
Q ss_pred HHHccCCHHH
Q 001966 901 ALCKREEYSE 910 (989)
Q Consensus 901 ~~~~~g~~~~ 910 (989)
+..+.....+
T Consensus 154 ~~~~l~~~~~ 163 (169)
T d1ihga1 154 VKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6654444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.00 E-value=2.5e-06 Score=83.31 Aligned_cols=125 Identities=7% Similarity=-0.027 Sum_probs=93.8
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
..+.|++++|+..+++.++ ..|++. .+..++..++..|++++|++.++.+.+..+. +...+..++..+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence 4567999999999999999 888665 7888889999999999999999999988765 67777777777666665555
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
+...........+.++...+...+..+...|+.++|.+.++++.+. .|+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~--~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL--RQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC
Confidence 5444333222222224555677788899999999999999988764 554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=5.6e-05 Score=68.58 Aligned_cols=127 Identities=7% Similarity=-0.112 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
.....+......|++++|...|.++++ +.+....-. ...+.+ +......+.. ....++..++..+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l~~------~~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALR--EWRGPVLDD------LRDFQF--VEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTTGG------GTTSTT--HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCccccccc------CcchHH--HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 445566778889999999999999998 444332100 001111 1111111111 13467788999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCcccchhH
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA-----SFGWVSNSISL 965 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~ 965 (989)
+.|++++|+..++++++..|. +..+|..++.+|...|++.+|.+.|+++. +.|+.|.....
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999999999999988 99999999999999999999999999874 36889976543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0048 Score=61.27 Aligned_cols=137 Identities=12% Similarity=0.188 Sum_probs=76.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 225 EFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNL 304 (989)
Q Consensus 225 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 304 (989)
.||..--..++.-|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 3455555556666667777777777776543 25566677777777777777766542 55577777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 305 IYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG 382 (989)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 382 (989)
...+.+.....-| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 7776665544332 2223333445555567777777778888877777776543 2345666777777777754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.96 E-value=4.2e-06 Score=81.61 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=89.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME 875 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 875 (989)
..+.|++++|+..+++.++.. +.|...+..++..++..|++++|...++..++ +.|+.. .+..+..++...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 456789999999999988853 45577888999999999999999999999988 788766 55555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+...+......+.+++...+...+..+...|+.++|...++++.+..|.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4443332222222223444556677788889999999999998888766
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0041 Score=61.73 Aligned_cols=127 Identities=12% Similarity=0.023 Sum_probs=51.3
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHH
Q 001966 160 MLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYF 239 (989)
Q Consensus 160 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (989)
..+.-|.+.|.++.|..+|..+.+ |..++..+++.+++..|.....+. .+..+|..+..++.
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---------NSTRTWKEVCFACV 80 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---------CCHHHHHHHHHHHH
Confidence 344555555666666655554422 344455555555555555544332 23335555555554
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSA 310 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 310 (989)
+.....-| .+.......+......++..|-..|.+++...+++..... -.++...++.++..|++
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 44333222 1111111123333334445555555555555555544322 12334444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=0.00013 Score=66.00 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 868 (989)
....+......|++++|.+.|.+.... .+... +......+-+...-..+ .+. ...+..++.++.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l-----~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATAL-----VEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344556778999999999999999874 22211 00001111111111111 111 236677888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCccCHHhH
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMG-----ESGFRLGFASC 930 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 930 (989)
+.|++++|+..++++++.++. +...|..++.+|.+.|+.++|++.|+++. +.+.+|++.+-
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999999999998766 88999999999999999999999999874 34666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=2.7e-05 Score=62.22 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRM-----PI-SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
.+..++..+.+.|++++|+..|+++++..+ .+ ...++..++.++.+.|++++|+..++++++..|+ ++.++..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 344566666666667666666666654311 11 1355666666666677777777777766666666 6666555
Q ss_pred HHH
Q 001966 933 VAN 935 (989)
Q Consensus 933 l~~ 935 (989)
++.
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=2.9e-05 Score=69.16 Aligned_cols=93 Identities=14% Similarity=-0.015 Sum_probs=69.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----c--
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMP-I----------SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----L-- 925 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-- 925 (989)
+..+...|++++|++.|+++++..+. | ....|..++.+|.+.|++++|+..++++++..++ +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 45566677788888777777764221 1 1356888899999999999999999888764321 1
Q ss_pred ---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 926 ---GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 926 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
...+++.+|.+|...|++++|.+.|+++++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1346788999999999999999999998763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=5.7e-05 Score=60.20 Aligned_cols=78 Identities=9% Similarity=0.038 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-ch
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----L-GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SI 963 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 963 (989)
+.+-+..+|..+.+.|++++|+..++++++..+. + ...++..||.+|.+.|++++|+..++++++. .|+ ..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 4566778999999999999999999999875332 1 2567999999999999999999999999874 786 55
Q ss_pred hHHHHHh
Q 001966 964 SLADIVK 970 (989)
Q Consensus 964 ~~~~l~~ 970 (989)
++.++..
T Consensus 82 a~~Nl~~ 88 (95)
T d1tjca_ 82 ANGNLKY 88 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5655543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=0.00029 Score=62.35 Aligned_cols=99 Identities=17% Similarity=0.033 Sum_probs=70.1
Q ss_pred HHHHH--HHHHHhcCCHhHHHHHHHHHHhCCCCC---C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 001966 824 TYRSL--LNGYNRMGNRSEVFVVFEEMLGKGIEP---D----------NFTYYVMIDAHCKEGNVMEALKLKDLIFDKR- 887 (989)
Q Consensus 824 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 887 (989)
+|..+ +..+...|++++|+..|++.++ +.| + ...|..++.+|...|++++|++.++++++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 44444 4455667888888888888877 222 1 1357778888888899988888888887531
Q ss_pred ----CCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 888 ----MPIS-----AEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 888 ----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..++ ..++..++.+|...|++++|+..|+++++..++
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1111 235778899999999999999999998876433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.49 E-value=0.00087 Score=57.13 Aligned_cols=111 Identities=8% Similarity=0.067 Sum_probs=71.9
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEAL 912 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 912 (989)
++++|+.+|++..+.| +......|+. ....+.++|+++++++.+.| ++.+...|+..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4566666666666643 2222333322 23456777777877777765 55666677766654 45678888
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 958 (989)
++|+++.+.+ ++.+...|+..|.. ..+.++|.++++++-+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888877766 66777777777776 4577788888887776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.08 E-value=0.0069 Score=51.23 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 001966 802 NMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEAL 877 (989)
Q Consensus 802 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 877 (989)
++++|+++|++..+.|. + .....|+ .....+.++|+.++++..+.| +......|+..|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 46667777777666542 1 2222222 233457788888888887754 44556666666654 45688999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCC
Q 001966 878 KLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGF 923 (989)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 923 (989)
++|+++.+.+ ++.+...|+..|.. ..+.++|.++++++.+.+.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999998875 56777778877765 4689999999999988873
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.33 Score=50.56 Aligned_cols=415 Identities=12% Similarity=0.043 Sum_probs=200.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 001966 516 IGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYC--MAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN 593 (989)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 593 (989)
.-..+.|+..++..+...+.+. | ...|...-..-. .....++...++++-.+ .+.........+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhccC
Confidence 3345677888777776665321 2 223333322222 23344444444433111 01111223334556666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 594 IAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEE 673 (989)
Q Consensus 594 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 673 (989)
+...+..+. ..+++...-.....+....|+..+|...+..+-..|.. ..+.+-.++..
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~~ 145 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFSV 145 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHH
Confidence 665444331 22345555556667777777777777666655444322 11222233444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChh
Q 001966 674 MCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTL 753 (989)
Q Consensus 674 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 753 (989)
+.+.|. .+...+-.-+......|+...|..+...+... ........+........... .....+.+..
T Consensus 146 ~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~-------~~~~~~~~~~ 213 (450)
T d1qsaa1 146 WRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT-------FARTTGATDF 213 (450)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH-------HHHHSCCCHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH-------HHhcCCCChh
Confidence 444432 23333334445555667777777766543211 22333333333332222211 1111222222
Q ss_pred hHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 754 SFNTLIEFLCI--SNKLQEAHQLLDAMLEEQVNPNHDTYTT----LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRS 827 (989)
Q Consensus 754 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 827 (989)
....+..++.+ ..+.+.|..++......... +...+.. ++..+...+..+.|...+......+ .+......
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w 290 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIER 290 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHH
Confidence 22222222222 34677777777776643222 2222221 2222234456677777776666532 33333333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
.+......+++..+...++.|... ........+=++.++...|+.++|...|..+... ++ -|..|+. .+.|.
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~ 362 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGE 362 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTC
T ss_pred HHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH--HHcCC
Confidence 444455667777777777765431 0112223344567777788888888888777532 23 2333321 11221
Q ss_pred HHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHH
Q 001966 908 YSEALRLLNEMGESGFR--LGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLM 985 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 985 (989)
.-. +-..-....+. .....-...+..+...|...+|...+..+.+. .++.....++....+.|.++.|+...
T Consensus 363 ~~~---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 363 EYE---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp CCC---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCC---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 000 00000000000 00111234567788889999998888777643 34556667777778888888887665
Q ss_pred hh
Q 001966 986 KQ 987 (989)
Q Consensus 986 ~~ 987 (989)
.+
T Consensus 437 ~~ 438 (450)
T d1qsaa1 437 IA 438 (450)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.0063 Score=49.23 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 888 MPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..+...+....++++.+.. +.++|+.+++++...+|.-....++.||.+|++.|++++|++.++++++. .|+.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 3456666666666666543 45667777777766654412356677777777777777777777777653 6654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.017 Score=46.56 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 854 EPDNFTYYVMIDAHCKEGN---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 854 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
.|...+-...++++.++.+ .++|+.+++++.+.++.-..+.+..|+-+|.+.|++++|.+.++++++..|. +..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHH
Confidence 3455566677777776544 5678888888876554323467778888888888888888888888888876 4443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.98 E-value=7.5 Score=39.59 Aligned_cols=203 Identities=7% Similarity=-0.036 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 662 CDVDKAFQLYEEMCEKGVEPNTLTYNVLI----DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 662 g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
.+.+.|..++......... +...+..+. ..+...+..+.+...+......+ .+.....-.+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 5677788777776654222 222222222 22233466777888887776653 3444434444455667899999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
...+..+............-++.++...|+.++|...|..+... ++ .|.-|... +.|..-. +....
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~~ 370 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKIDK 370 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCCC
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcCC
Confidence 99888875433345566677889999999999999999988742 34 34433322 2221100 00000
Q ss_pred C--CCCH-H---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 818 L--KPAT-I---TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 818 ~--~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
. .+.. . .-..-+..+...|...+|...+..+... .+......++....+.|.++.|+....++.
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 0110 0 0112345677899999999999988862 244556677788899999999998887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.83 E-value=3 Score=32.77 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
.++.+.++|+-+.-.++++.+.+. -+|++.....++.+|.+.|...++-+++.++-+.|
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444443332 24444444444444444444444444444444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.81 E-value=4.4 Score=31.79 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=80.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 842 (989)
...|..++..+++.+.... .+..-||-.|--....-+-+-..+.++.+=+ --| ....++....+
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHH
Confidence 4456677777777776643 2344444444333333333333333333322 111 12234444443
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 843 VVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..+-. ...++.....-++.+..+|+-+.-.++++.+.+. -+++++....++.+|.+.|...+|-+++.++.+.|
T Consensus 77 ~C~~~-----~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVI-----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHH-----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHH-----hcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33332 2223344444456777788888888888887764 46688888888888888888888888888888877
Q ss_pred Cc
Q 001966 923 FR 924 (989)
Q Consensus 923 ~~ 924 (989)
.+
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 55
|