Citrus Sinensis ID: 001971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 988 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7P5 | 927 | Squamosa promoter-binding | yes | no | 0.918 | 0.978 | 0.581 | 0.0 | |
| Q9SMX9 | 881 | Squamosa promoter-binding | no | no | 0.883 | 0.990 | 0.585 | 0.0 | |
| Q75LH6 | 969 | Squamosa promoter-binding | yes | no | 0.955 | 0.974 | 0.437 | 0.0 | |
| Q9LGU7 | 862 | Squamosa promoter-binding | no | no | 0.849 | 0.973 | 0.366 | 1e-157 | |
| Q6Z8M8 | 1140 | Squamosa promoter-binding | no | no | 0.554 | 0.480 | 0.347 | 2e-86 | |
| A2YX04 | 1140 | Squamosa promoter-binding | N/A | no | 0.554 | 0.480 | 0.347 | 2e-86 | |
| Q8RY95 | 1035 | Squamosa promoter-binding | no | no | 0.543 | 0.518 | 0.341 | 1e-78 | |
| Q700C2 | 988 | Squamosa promoter-binding | no | no | 0.529 | 0.529 | 0.332 | 5e-75 | |
| P93015 | 131 | Squamosa promoter-binding | no | no | 0.092 | 0.694 | 0.637 | 1e-28 | |
| Q94JW8 | 405 | Squamosa promoter-binding | no | no | 0.090 | 0.219 | 0.629 | 6e-28 |
| >sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/1008 (58%), Positives = 719/1008 (71%), Gaps = 101/1008 (10%)
Query: 1 METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
ME R GE +S++ GK+++EWDLNDWKW+GDLF+A++LN
Sbjct: 1 MEARIEGEVEG----HSLEYGFSGKRSVEWDLNDWKWNGDLFVATQLNHG---------- 46
Query: 61 PLAVGNSSNSSSSCSDEVNLGIENGKR---EVEKKRRAVVV---EDHNSYEVAAGGLSLK 114
SSNSSS+CSDE N+ I +R E +KKRRAV V E+ N + A L+L
Sbjct: 47 ------SSNSSSTCSDEGNVEIMERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHRLTLN 100
Query: 115 LGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVC-QVEDCGADLSNAKDYHRRHKVCE 173
LGGN N G+ KKTK GGG SRA+C QV++CGADLS KDYHRRHKVCE
Sbjct: 101 LGGN----------NIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCE 150
Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
+HSKA+ ALVG +MQRFCQQCSRFHVL+EFDEGKRSCRRRLAGHNKRRRK NPD + NG+
Sbjct: 151 IHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGT 210
Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
S ++DQTS Y+LI+LL+ILSN+HS++SDQ DQDLLSHLL+ L S AGE+ GR L
Sbjct: 211 SMSDDQTSNYMLITLLKILSNIHSNQSDQTGDQDLLSHLLKSLVSQAGEHIGRN----LV 266
Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQD 353
++ N + A L+ Q P + +VSE P Q + A+ D
Sbjct: 267 GLLQGGGGLQASQNIGNLSALLSLEQA---PREDIKHHSVSETPWQEVYANSAQERVAPD 323
Query: 354 GNVAQIKMNNFDLNDVYIDSDDGTEDVER-SPVPANLGTSSIDCPSWVRQDSQQSSPPQT 412
+ Q+K+N+FDLND+YIDSDD T D+ER SP P N TSS+D QDS+QSSPPQT
Sbjct: 324 RSEKQVKVNDFDLNDIYIDSDD-TTDIERSSPPPTNPATSSLD----YHQDSRQSSPPQT 378
Query: 413 S--GNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMES 470
S + ++ SSS DAQSRTDRIVFKLFGKEPNDFP+ LR QIL+WL+H+P+DMES
Sbjct: 379 SRRNSDSASDQSPSSSSGDAQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMES 438
Query: 471 YIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIY 530
YIRPGC++LTIYLRQ EA+WEELCCDL+FSL RLLDLS+D WT GW+Y RVQ+Q+AF +
Sbjct: 439 YIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAF 498
Query: 531 NGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMV 590
NGQVVLDTSLP RS++YS+I++V+P+AV +++AQF VKGINL R TRLLC VEG ++V
Sbjct: 499 NGQVVLDTSLPLRSHDYSQIITVRPLAV--TKKAQFTVKGINLRRPGTRLLCTVEGTHLV 556
Query: 591 QEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDH-GFSSTFFPFIVAE-ED 648
QEAT +++ D KE +E+ VNFSC +P +GRGF+EIED G SS+FFPFIV+E ED
Sbjct: 557 QEATQGGMEERDDLKENNEIDFVNFSCEMPIASGRGFMEIEDQGGLSSSFFPFIVSEDED 616
Query: 649 VCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPN- 707
+CSEIR LES LEF TD+ + QAMDFIHEIGWL HRS+ KSRL D N
Sbjct: 617 ICSEIRRLESTLEFTGTDSAM----------QAMDFIHEIGWLLHRSELKSRLAASDHNP 666
Query: 708 TDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILL-DGTVSLGEHPSLDLALTELGLLHRAV 766
DLF L RFK+LIEFSMD EWC V+KKLL+IL +GTV PS D AL+EL LLHRAV
Sbjct: 667 EDLFSLIRFKFLIEFSMDREWCCVMKKLLNILFEEGTVD----PSPDAALSELCLLHRAV 722
Query: 767 RKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKD 826
RKNS+P+V++LLRF P + + L LFRPD GP GLTP+HIAAGKD
Sbjct: 723 RKNSKPMVEMLLRFSPKKKNQTLAG-------------LFRPDAAGPGGLTPLHIAAGKD 769
Query: 827 GSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGG- 885
GSEDVLDALT+DPGM GI+AWKN+RD++G TPEDYARLRGH+SYIHLVQ+K++++P
Sbjct: 770 GSEDVLDALTEDPGMTGIQAWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKE 829
Query: 886 HVVVDICGVVPDS-NIYQKQNNES---TASFEIGQTPVRPTQHNCKLC-HQKLGYATASR 940
HVVV+I P+S NI KQ S ++S EI Q + CKLC H+++ T +
Sbjct: 830 HVVVNI----PESFNIEHKQEKRSPMDSSSLEITQI------NQCKLCDHKRVFVTTHHK 879
Query: 941 SLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
S+ Y+PAMLSMVAIAAVCVCVALLFKSCPEVLYVF+PFRWE+L+YGTS
Sbjct: 880 SVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELLEYGTS 927
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/996 (58%), Positives = 699/996 (70%), Gaps = 123/996 (12%)
Query: 1 METRFR--GEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQ 58
ME R GEA FYG +VGK+++EWDLNDWKWDGDLF+A++ GRQ
Sbjct: 1 MEARIDEGGEAQQFYG-------SVGKRSVEWDLNDWKWDGDLFLATQTTR------GRQ 47
Query: 59 FFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGN 118
FFPL GNSSNSSSSCSDE N +KKRRAV ++ + G L+L L G
Sbjct: 48 FFPL--GNSSNSSSSCSDEGN----------DKKRRAVAIQGDTN-----GALTLNLNGE 90
Query: 119 GHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKA 178
L KKTK G AVCQVE+C ADLS KDYHRRHKVCEMHSKA
Sbjct: 91 SDGLF----------PAKKTKSG------AVCQVENCEADLSKVKDYHRRHKVCEMHSKA 134
Query: 179 SRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNND 238
+ A VG ++QRFCQQCSRFH+LQEFDEGKRSCRRRLAGHNKRRRKTNP+ ANG+ P++D
Sbjct: 135 TSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGN-PSDD 193
Query: 239 QTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDM 298
+S YLLI+LL+ILSNMH + DQDL+SHLL+ L S AGE G+ + LL
Sbjct: 194 HSSNYLLITLLKILSNMH----NHTGDQDLMSHLLKSLVSHAGEQLGKNLVELL------ 243
Query: 299 LNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQ 358
L S G+ + + L + P E +Q S D E++ + Q
Sbjct: 244 LQGGGSQGSLNIGNSALLGIEQAP-----------QEELKQFSARQDGTATENR--SEKQ 290
Query: 359 IKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDS 418
+KMN+FDLND+YIDSDD DVERSP P N TSS+D PSW+ QSSPPQTS NSDS
Sbjct: 291 VKMNDFDLNDIYIDSDD--TDVERSPPPTNPATSSLDYPSWI----HQSSPPQTSRNSDS 344
Query: 419 ASAQSPSSSSD-AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCV 477
AS QSPSSSS+ AQ RT RIVFKLFGKEPN+FP+VLR QILDWLSHSP+DMESYIRPGC+
Sbjct: 345 ASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCI 404
Query: 478 ILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLD 537
+LTIYLRQAE AWEEL DL FSL +LLDLS+D WT+GW+Y RVQ+Q+AF+YNGQVV+D
Sbjct: 405 VLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVD 464
Query: 538 TSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHE- 596
TSL +S +YS I+SVKP+A+ A+E+AQF VKG+NL + TRLLC+VEGKY++QE TH+
Sbjct: 465 TSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDS 524
Query: 597 LLDDVDGFKELDEL-QCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAE-EDVCSEIR 654
+ D FK+ E+ +CVNFSC +P ++GRGF+EIED G SS+FFPF+V E +DVCSEIR
Sbjct: 525 TTREDDDFKDNSEIVECVNFSCDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIR 584
Query: 655 MLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714
+LE+ LEF T D+ QAMDFIHEIGWL HR S+LG DPN +FPL
Sbjct: 585 ILETTLEFTGT----------DSAKQAMDFIHEIGWLLHR----SKLGESDPNPGVFPLI 630
Query: 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLA-LTELGLLHRAVRKNSRPL 773
RF+WLIEFSMD EWCAV++KLL++ DG V GE S A L+EL LLHRAVRKNS+P+
Sbjct: 631 RFQWLIEFSMDREWCAVIRKLLNMFFDGAV--GEFSSSSNATLSELCLLHRAVRKNSKPM 688
Query: 774 VDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833
V++LLR++P + + LFRPD GPAGLTP+HIAAGKDGSEDVLD
Sbjct: 689 VEMLLRYIPKQ----------------QRNSLFRPDAAGPAGLTPLHIAAGKDGSEDVLD 732
Query: 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNG-GHVVVDIC 892
ALT+DP MVGIEAWK RDS+G TPEDYARLRGH+SYIHL+Q+KINK+ HVVV+I
Sbjct: 733 ALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIP 792
Query: 893 GVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMV 952
D + ++ ++ EI Q P CKLC KL Y T RS+ Y+PAMLSMV
Sbjct: 793 VSFSDREQKEPKSGPMASALEITQIP-------CKLCDHKLVYGTTRRSVAYRPAMLSMV 845
Query: 953 AIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
AIAAVCVCVALLFKSCPEVLYVF+PFRWE+LDYGTS
Sbjct: 846 AIAAVCVCVALLFKSCPEVLYVFQPFRWELLDYGTS 881
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1002 (43%), Positives = 609/1002 (60%), Gaps = 58/1002 (5%)
Query: 4 RFRGEAHHFYG--MNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFP 61
R ++ H YG + D+ K+ WDLNDW+WD D F+A+ + A +
Sbjct: 5 RVGAQSRHLYGGGLGEPDMDRRDKRLFGWDLNDWRWDSDRFVATPVPAAEASGLAL---- 60
Query: 62 LAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEV-----AAGGLSLKLG 116
NSS SSS + ++ N + + +K++R VV++D + + G LSL++G
Sbjct: 61 ----NSSPSSSEEAGAASVRNVNARGDSDKRKRVVVIDDDDVEDDELVENGGGSLSLRIG 116
Query: 117 GNGHPLSEREMG--NWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEM 174
G+ G + +GKK + GGS S CQVE C ADL+ +DYHRRHKVCEM
Sbjct: 117 GDAVAHGAGVGGGADEEDRNGKKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEM 176
Query: 175 HSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSS 234
H+KA+ A+VGN +QRFCQQCSRFH LQEFDEGKRSCRRRLAGHN+RRRKT P+ GS+
Sbjct: 177 HAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRPEVAVGGSA 236
Query: 235 PNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE 294
D+ S YLL+ LL + +N+++ ++ Q+L+S LLR L + A + + LL+
Sbjct: 237 FTEDKISSYLLLGLLGVCANLNADNAEHLRGQELISGLLRNLGAVAKSLDPKELCKLLEA 296
Query: 295 HQDMLNERTSAGNSEVVQAFL-------ANGQGCPTPFRQQLNATVSEMPQQVSLPHDAR 347
Q M + ++AG SE A + A PF +N + +P ++
Sbjct: 297 CQSM-QDGSNAGTSETANALVNTAVAEAAGPSNSKMPF---VNGDQCGLASSSVVPVQSK 352
Query: 348 GAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQS 407
+ K +FDLND Y + + E SP PA T S +CPSW+ QDS QS
Sbjct: 353 SPTVATPDPPACKFKDFDLNDTYGGMEGFEDGYEGSPTPAFKTTDSPNCPSWMHQDSTQS 412
Query: 408 SPPQTSGNSDSASAQSPSS-SSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPS 466
PPQTSGNSDS SAQS SS + DAQ RTD+IVFKLF K P+D P VLR+QIL WLS SP+
Sbjct: 413 -PPQTSGNSDSTSAQSLSSSNGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPT 471
Query: 467 DMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQI 526
D+ESYIRPGC+ILT+YLR E+AW+EL +++ L +LL+ S +FW SG V+ V+HQI
Sbjct: 472 DIESYIRPGCIILTVYLRLVESAWKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQI 531
Query: 527 AFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEG 586
AF++NGQ++LD L +++Y KIL V+PIA P S + F V+G+NL ++RL+C+ EG
Sbjct: 532 AFMHNGQLMLDRPLANSAHHYCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLICSFEG 591
Query: 587 KYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAE 646
+ QE T ++DDV E D+++ +NF C +P+ GRGF+E+ED GFS+ FFPFI+AE
Sbjct: 592 SCIFQEDTDNIVDDV----EHDDIEYLNFCCPLPSSRGRGFVEVEDGGFSNGFFPFIIAE 647
Query: 647 EDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDP 706
+D+CSE+ LES E + E+ + +NQA++F++E+GWL HR+ S+ +
Sbjct: 648 QDICSEVCELESIFE----SSSHEQADDDNARNQALEFLNELGWLLHRANIISKQDKVPL 703
Query: 707 NTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV 766
+ F + RF+ L F+M+ EWCAV K LL L G V +G ++ L+E LLH AV
Sbjct: 704 AS--FNIWRFRNLGIFAMEREWCAVTKLLLDFLFTGLVDIGSQSPEEVVLSE-NLLHAAV 760
Query: 767 RKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKD 826
R S +V LL + P E R + FLFRPD GP+ TP+HIAA D
Sbjct: 761 RMKSAQMVRFLLGYKPNESLKRTA-----------ETFLFRPDAQGPSKFTPLHIAAATD 809
Query: 827 GSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGH 886
+EDVLDALT+DPG+VGI W+NARD +G TPEDYAR RG+ +Y+++V+KKINK GH
Sbjct: 810 DAEDVLDALTNDPGLVGINTWRNARDGAGFTPEDYARQRGNDAYLNMVEKKINKHLGKGH 869
Query: 887 VVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLC-HQKLGYA-TASRSLVY 944
VV+ + + + S EIG T V P +C C Q L Y + +R+ +Y
Sbjct: 870 VVLGVPSSI--HPVITDGVKPGEVSLEIGMT-VPPPAPSCNACSRQALMYPNSTARTFLY 926
Query: 945 KPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYG 986
+PAML+++ IA +CVCV LL +CP+V Y FRWE+L+ G
Sbjct: 927 RPAMLTVMGIAVICVCVGLLLHTCPKV-YAAPTFRWELLERG 967
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust.
Identities = 360/983 (36%), Positives = 500/983 (50%), Gaps = 144/983 (14%)
Query: 22 AVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLG 81
+ KK LEWDLNDW+WD +LF+A+ N +P++ R+ E++ G
Sbjct: 4 GLKKKGLEWDLNDWRWDSNLFLATPSNASPSKCSRREL------------GRAEGEIDFG 51
Query: 82 IENGKREVEKKRRAVVVEDHNSYE----VAAGGLSLKLGGNGHPLSEREMGNWAGSSGKK 137
+ + KRR V ED + E G ++ G SE EM
Sbjct: 52 VVD-------KRRRVSPEDDDGEECINAATTNGDDGQISGQRGRSSEDEM---------- 94
Query: 138 TKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRF 197
+ G SSS CQV+ C +LS+A+DY++RHKVCE+H+K+ + NV RFCQQCSRF
Sbjct: 95 PRQGTCSSSGPCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRF 154
Query: 198 HVLQEFDEGKRSCRRRLAGHNKRRRKTNPDA-VANGSSPNNDQTSGYLLISLLRILSNMH 256
H LQEFDEGK+SCR RLA HN+RRRK A V S N S LL+ L ++
Sbjct: 155 HFLQEFDEGKKSCRSRLAQHNRRRRKVQVQAGVDVNSLHENHSLSNTLLLLLKQLSGLDS 214
Query: 257 SSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLA 316
S S+Q + L++L++ LA+ AG Q +QDML SA + ++A
Sbjct: 215 SGPSEQINGPNYLTNLVKNLAALAGT----------QRNQDMLKNANSAAIASHTGNYVA 264
Query: 317 NGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQ-DGNVAQIKMNNFDLNDVYIDSDD 375
G S PH G E + + ++ NFDLND Y++ D+
Sbjct: 265 KGNSL-----------------HDSRPHIPVGTESTAEEPTVERRVQNFDLNDAYVEGDE 307
Query: 376 GTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTD 435
D V G D PS +R
Sbjct: 308 NRTD---KIVFKLFGKEPNDFPSDLRAQ-------------------------------- 332
Query: 436 RIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCC 495
+ P+D +R PGC+ILTIY+R W++L
Sbjct: 333 --ILSWLSNCPSDIESYIR-------------------PGCIILTIYMRLPNWMWDKLAA 371
Query: 496 DLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKP 555
D + +L+ LS D+ W +GW+YARVQ + NG ++L + P N +IL + P
Sbjct: 372 DPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLMLASPWQPAIGNKHQILFITP 431
Query: 556 IAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNF 615
IAV S A F VKG+N+ + T+LLC GKY++QEAT +LLDD K QC+ F
Sbjct: 432 IAVACSSTANFSVKGLNIAQPTTKLLCIFGGKYLIQEATEKLLDDT---KMQRGPQCLTF 488
Query: 616 SCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEF-NRTDADVERFGK 674
SCS P+ +GRGFIE+ED SS FPF+VAEEDVCSEIR LE L + D VE+
Sbjct: 489 SCSFPSTSGRGFIEVEDLDQSSLSFPFVVAEEDVCSEIRTLEHLLNLVSFDDTLVEKNDL 548
Query: 675 IDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKK 734
+ ++++A++F+HE GW RS ++ T+ FP RF+WL+ F++D E+CAV+KK
Sbjct: 549 LASRDRALNFLHEFGWFLQRSHIRATSETPKDCTEGFPAARFRWLLSFAVDREFCAVIKK 608
Query: 735 LLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794
LL L G V L +++ L + L+ AV K S+PL+D LL + + +
Sbjct: 609 LLDTLFQGGVDLDVQSTVEFVLKQ-DLVFVAVNKRSKPLIDFLLTY----------TTSS 657
Query: 795 ALVDGVHKG----FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNA 850
A +DG FLF PD+ GP+ +TP+HIAA + VLDALTDDP +GI+AWKNA
Sbjct: 658 APMDGTESAAPAQFLFTPDIAGPSDITPLHIAATYSDTAGVLDALTDDPQQLGIKAWKNA 717
Query: 851 RDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTA 910
RD++G TPEDYAR RGH SYI +VQ KI+ R HV V I ++ +K ++S
Sbjct: 718 RDATGLTPEDYARKRGHESYIEMVQNKIDSRLPKAHVSVTISSTTSTTDFTEKHASQSKT 777
Query: 911 S------FEIGQTPVRPTQHNCKLCHQKLGYA-TASRSLVYKPAMLSMVAIAAVCVCVAL 963
+ E GQ +C+ C +L Y +R L +PA+LS+VAIAAVCVCV L
Sbjct: 778 TDQTAFDVEKGQQISTKPPLSCRQCLPELAYRHHLNRFLSTRPAVLSLVAIAAVCVCVGL 837
Query: 964 LFKSCPEVLYVFRPFRWEMLDYG 986
+ + P + + PFRW L G
Sbjct: 838 IMQGPPHIGGMRGPFRWNSLRSG 860
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 212/610 (34%), Positives = 325/610 (53%), Gaps = 62/610 (10%)
Query: 405 QQSSPP----QTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILD 459
+ SPP Q+ S S S SPS+S SD Q RT RI+FKLFGKEP+ P LR +I++
Sbjct: 565 ENGSPPNPAYQSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVN 624
Query: 460 WLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVY 519
WL HSP++ME YIRPGC++L++YL AW+EL +L ++ L+ S+ FW G
Sbjct: 625 WLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFL 684
Query: 520 ARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATR 579
R Q+ +G L S R+ N ++ V PIAV + +KG NL T+
Sbjct: 685 VRTDAQLVSYKDGATRLSKSW--RTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 742
Query: 580 LLCAVEGKYMVQE----ATHELLDDVDGFKELDELQCVNFSCSIPA----VTGRGFIEIE 631
+ C GKY+ +E A + D G + D +P + GR FIE+E
Sbjct: 743 IHCTSTGKYISKEVLCSAYPGTIYDDSGVETFD----------LPGEPHLILGRYFIEVE 792
Query: 632 DHGFSSTFFPFIVAEEDVCSEIRMLESALEFNR-----TDADVERFGKIDTKNQAMDFIH 686
+ F FP I+A VC E+R LE+ LE ++ +D ++ K++ + F++
Sbjct: 793 NR-FRGNSFPVIIANSSVCQELRSLEAELEGSQFVDGSSDDQAHDARRLKPKDEVLHFLN 851
Query: 687 EIGWLFHRSQSKSRLGHLDPN-TDL--FPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGT 743
E+GWLF ++ + + D + DL F RF++L+ FS + +WC++ K LL IL +
Sbjct: 852 ELGWLFQKAAASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRS 911
Query: 744 VSLGE--HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVH 801
++ E +L++ L+E+ LL+RAV++ S + LL++FV + D
Sbjct: 912 LASDELSQETLEM-LSEIHLLNRAVKRKSSHMARLLVQFVVVCPDD-------------S 957
Query: 802 KGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDY 861
K + F P+V GP GLTP+H+AA + + D++DALTDDP +G+ W +A D G +PE Y
Sbjct: 958 KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETY 1017
Query: 862 ARLRGHYSYIHLV-QKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVR 920
A+LR + +Y LV QK ++++ N ++V + D + + N+S I +R
Sbjct: 1018 AKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIHMDQSGNVGEKNKSA----IQALQIR 1073
Query: 921 PTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVF---RP 977
L L SR L+ +P + SM+AIAAVCVCV + ++ L F R
Sbjct: 1074 SCNQCAILDAGLLRRPMHSRGLLARPYIHSMLAIAAVCVCVCVFMRA----LLRFNSGRS 1129
Query: 978 FRWEMLDYGT 987
F+WE LD+GT
Sbjct: 1130 FKWERLDFGT 1139
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 212/610 (34%), Positives = 325/610 (53%), Gaps = 62/610 (10%)
Query: 405 QQSSPP----QTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILD 459
+ SPP Q+ S S S SPS+S SD Q RT RI+FKLFGKEP+ P LR +I++
Sbjct: 565 ENGSPPNPAYQSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVN 624
Query: 460 WLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVY 519
WL HSP++ME YIRPGC++L++YL AW+EL +L ++ L+ S+ FW G
Sbjct: 625 WLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFL 684
Query: 520 ARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATR 579
R Q+ +G L S R+ N ++ V PIAV + +KG NL T+
Sbjct: 685 VRTDAQLVSYKDGATRLSKSW--RTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 742
Query: 580 LLCAVEGKYMVQE----ATHELLDDVDGFKELDELQCVNFSCSIPA----VTGRGFIEIE 631
+ C GKY+ +E A + D G + D +P + GR FIE+E
Sbjct: 743 IHCTSTGKYISKEVLCSAYPGTIYDDSGVETFD----------LPGEPHLILGRYFIEVE 792
Query: 632 DHGFSSTFFPFIVAEEDVCSEIRMLESALEFNR-----TDADVERFGKIDTKNQAMDFIH 686
+ F FP I+A VC E+R LE+ LE ++ +D ++ K++ + F++
Sbjct: 793 NR-FRGNSFPVIIANSSVCQELRSLEAELEGSQFVDGSSDDQAHDARRLKPKDEVLHFLN 851
Query: 687 EIGWLFHRSQSKSRLGHLDPN-TDL--FPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGT 743
E+GWLF ++ + + D + DL F RF++L+ FS + +WC++ K LL IL +
Sbjct: 852 ELGWLFQKAAASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRS 911
Query: 744 VSLGE--HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVH 801
++ E +L++ L+E+ LL+RAV++ S + LL++FV + D
Sbjct: 912 LASDELSQETLEM-LSEIHLLNRAVKRKSSHMARLLVQFVVVCPDD-------------S 957
Query: 802 KGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDY 861
K + F P+V GP GLTP+H+AA + + D++DALTDDP +G+ W +A D G +PE Y
Sbjct: 958 KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETY 1017
Query: 862 ARLRGHYSYIHLV-QKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVR 920
A+LR + +Y LV QK ++++ N ++V + D + + N+S I +R
Sbjct: 1018 AKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIHMDQSGNVGEKNKSA----IQALQIR 1073
Query: 921 PTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVF---RP 977
L L SR L+ +P + SM+AIAAVCVCV + ++ L F R
Sbjct: 1074 SCNQCAILDAGLLRRPMHSRGLLARPYIHSMLAIAAVCVCVCVFMRA----LLRFNSGRS 1129
Query: 978 FRWEMLDYGT 987
F+WE LD+GT
Sbjct: 1130 FKWERLDFGT 1139
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 203/594 (34%), Positives = 315/594 (53%), Gaps = 57/594 (9%)
Query: 411 QTSGNSDSASAQSPSS-SSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDME 469
Q SG + S S SP S +SDAQ RT +IVFKL K+P+ P LR++I +WLS+ PS+ME
Sbjct: 481 QQSGYASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEME 540
Query: 470 SYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFI 529
SYIRPGCV+L++Y+ + AAWE+L L L LL S FW + Q+A
Sbjct: 541 SYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASH 600
Query: 530 YNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYM 589
NG+V S R+ N +++SV P+AV A E V+G +L + C G YM
Sbjct: 601 KNGKVRCSKSW--RTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYM 658
Query: 590 VQEATHELLDDVDGFKELDELQCVNFSCSI--PAVTGRGFIEIEDHGFSSTFFPFIVAEE 647
E T + DEL +F P GR FIE+E+ GF FP I+A
Sbjct: 659 AMEVTRAVCRQTI----FDELNVNSFKVQNVHPGFLGRCFIEVEN-GFRGDSFPLIIANA 713
Query: 648 DVCSEIRMLESALEFNRTDADVERFGKID----TKNQAMDFIHEIGWLFHRSQSKSRLGH 703
+C E+ L D E+ + ++ + + F++E+GWLF ++Q+
Sbjct: 714 SICKELNRLGEEFHPKSQDMTEEQAQSSNRGPTSREEVLCFLNELGWLFQKNQT----SE 769
Query: 704 LDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE--HPSLDLALTELGL 761
L +D F L RFK+L+ S++ ++CA+++ LL +L++ + E +LD+ L E+ L
Sbjct: 770 LREQSD-FSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDM-LAEIQL 827
Query: 762 LHRAVRKNSRPLVDLLLRFV--PLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPI 819
L+RAV++ S +V+LL+ ++ PL +S + F+F P++ GP G+TP+
Sbjct: 828 LNRAVKRKSTKMVELLIHYLVNPLTLSS-------------SRKFVFLPNITGPGGITPL 874
Query: 820 HIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879
H+AA GS+D++D LT+DP +G+ +W RD++G TP YA +R +++Y LV +K+
Sbjct: 875 HLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLA 934
Query: 880 KRPNGG------HVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKL 933
+ N H VVD G+ S + N+S++S T L +Q+
Sbjct: 935 DKRNKQVSLNIEHEVVDQTGL---SKRLSLEMNKSSSSCASCAT--------VALKYQR- 982
Query: 934 GYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGT 987
+ S+ L P + SM+A+A VCVCV + + P ++ F W LDYG+
Sbjct: 983 -RVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFP-IVRQGSHFSWGGLDYGS 1034
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (724), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 197/592 (33%), Positives = 313/592 (52%), Gaps = 69/592 (11%)
Query: 413 SGNSDSASAQSPSS-SSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESY 471
SG + S S SP S +S+AQ RT +I FKLF K+P+ P LR +I WLS PSDMES+
Sbjct: 448 SGYASSGSDYSPPSLNSNAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESF 507
Query: 472 IRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDS-FWTSGWVYARVQHQIAFIY 530
IRPGCVIL++Y+ + +AWE+L +L L R+ L DS FW++ Q+A
Sbjct: 508 IRPGCVILSVYVAMSASAWEQLEENL---LQRVRSLVQDSEFWSNSRFLVNAGRQLASHK 564
Query: 531 NGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMV 590
+G++ L S R+ N ++++V P+AV A E V+G NL RL CA G Y
Sbjct: 565 HGRIRLSKSW--RTLNLPELITVSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNYAS 622
Query: 591 QEAT---HELLDDVDGFKELDELQCVNFSC-SIPAVT-GRGFIEIEDHGFSSTFFPFIVA 645
E T H L ++DEL +F S +V+ GR FIE+E+ G FP I+A
Sbjct: 623 MEVTGREHRL-------TKVDELNVSSFQVQSASSVSLGRCFIELEN-GLRGDNFPLIIA 674
Query: 646 EEDVCSEIRMLESALEFNRTDADVERFGKID---TKNQAMDFIHEIGWLFHRSQSKSRLG 702
+C E+ LE EF+ D E+ +D ++ + + F++E+GWLF R + G
Sbjct: 675 NATICKELNRLEE--EFHPKDVIEEQIQNLDRPRSREEVLCFLNELGWLFQRKWTSDIHG 732
Query: 703 HLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLD---GTVSLGEHPSLDLALTEL 759
D F L RFK+L+ S++ ++C++++ +L ++++ G L SLD+ L ++
Sbjct: 733 EPD-----FSLPRFKFLLVCSVERDYCSLIRTVLDMMVERNLGKDGLLNKESLDM-LADI 786
Query: 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPI 819
LL+RA+++ + + + L+ + V+ + F+F P + GP +TP+
Sbjct: 787 QLLNRAIKRRNTKMAETLIHYS---------------VNPSTRNFIFLPSIAGPGDITPL 831
Query: 820 HIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879
H+AA S+D++DALT+DP +G+ W D++G TP YA +R ++SY LV +K+
Sbjct: 832 HLAASTSSSDDMIDALTNDPQEIGLSCWNTLVDATGQTPFSYAAMRDNHSYNTLVARKLA 891
Query: 880 KRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQ-KLGY--- 935
+ N G + ++I + + ++ ++E + +C C L Y
Sbjct: 892 DKRN-GQISLNIENGIDQIGLSKRLSSE--------------LKRSCNTCASVALKYQRK 936
Query: 936 ATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGT 987
+ SR L P + SM+A+A VCVCV + + P V F W LDYG+
Sbjct: 937 VSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQGSH-FSWGGLDYGS 987
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 68/91 (74%)
Query: 137 KTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSR 196
K + G +SS VCQVE C AD+S AK YH+RHKVC+ H+KA + + QRFCQQCSR
Sbjct: 41 KKQKGKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSR 100
Query: 197 FHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD 227
FH L EFDE KRSCRRRLAGHN+RRRK+ D
Sbjct: 101 FHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 67/89 (75%)
Query: 135 GKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQC 194
KK++ S +CQV C DLS++KDYH+RH+VCE HSK S +V + QRFCQQC
Sbjct: 109 SKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQC 168
Query: 195 SRFHVLQEFDEGKRSCRRRLAGHNKRRRK 223
SRFH L EFD+GKRSCRRRLAGHN+RRRK
Sbjct: 169 SRFHFLSEFDDGKRSCRRRLAGHNERRRK 197
|
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 988 | ||||||
| 255548291 | 1012 | conserved hypothetical protein [Ricinus | 0.995 | 0.972 | 0.732 | 0.0 | |
| 225437714 | 997 | PREDICTED: squamosa promoter-binding-lik | 0.989 | 0.980 | 0.717 | 0.0 | |
| 359480217 | 963 | PREDICTED: squamosa promoter-binding-lik | 0.967 | 0.992 | 0.714 | 0.0 | |
| 356499594 | 1010 | PREDICTED: squamosa promoter-binding-lik | 0.990 | 0.969 | 0.674 | 0.0 | |
| 449461697 | 1013 | PREDICTED: squamosa promoter-binding-lik | 0.993 | 0.969 | 0.662 | 0.0 | |
| 449518123 | 1014 | PREDICTED: LOW QUALITY PROTEIN: squamosa | 0.994 | 0.969 | 0.660 | 0.0 | |
| 357442095 | 1003 | SQUAMOSA promoter binding protein [Medic | 0.984 | 0.970 | 0.664 | 0.0 | |
| 357511495 | 994 | SQUAMOSA promoter binding protein [Medic | 0.959 | 0.953 | 0.634 | 0.0 | |
| 297744051 | 860 | unnamed protein product [Vitis vinifera] | 0.864 | 0.993 | 0.652 | 0.0 | |
| 225432161 | 1029 | PREDICTED: squamosa promoter-binding-lik | 0.986 | 0.947 | 0.585 | 0.0 |
| >gi|255548291|ref|XP_002515202.1| conserved hypothetical protein [Ricinus communis] gi|223545682|gb|EEF47186.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1461 bits (3783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1016 (73%), Positives = 837/1016 (82%), Gaps = 32/1016 (3%)
Query: 1 METRFRGEA--HHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQ 58
ME RF GEA HHFYGM++ DLRAV K++LEWDLNDWKWDGDLFIAS LNP P+ N+ RQ
Sbjct: 1 MEARFGGEAQAHHFYGMSAADLRAVEKRSLEWDLNDWKWDGDLFIASPLNPVPSSNMSRQ 60
Query: 59 FFPLAVGNSSNSSSSCS-----DEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
FFP+A G +N +SS S DEVNLGIE GKRE+EK+RR +V+ED N + G LSL
Sbjct: 61 FFPIATGTPTNGNSSNSSSSCSDEVNLGIEKGKRELEKRRRVIVIEDDNLNDEGVGSLSL 120
Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
KLGG+G P+SERE+GNW G+SGKKTK GGS SRAVCQVEDCGADLS+AKDYHRRHKVCE
Sbjct: 121 KLGGHGFPVSEREIGNWEGNSGKKTKLVGGSMSRAVCQVEDCGADLSSAKDYHRRHKVCE 180
Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
MHSKAS+ALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD V N S
Sbjct: 181 MHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDTVGNAS 240
Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
+ N++QTS YLLISLL+ILSNMHS+RSDQ TDQDLLSHLLR LAS + E+GG+ +SGLLQ
Sbjct: 241 TLNDEQTSSYLLISLLKILSNMHSNRSDQVTDQDLLSHLLRSLASQSMEHGGKKLSGLLQ 300
Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
E + +LN TS NSEV F+ N G + L S M Q+V H A G
Sbjct: 301 EPRALLNGGTSFRNSEVFLTFILNALGLLRSLKLHLIVPFSGMSQRVLCSHGANGPNVQT 360
Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
+E +D Q+KMNNFDLND+YIDSDDG ED+ERSPVP N+GTSS
Sbjct: 361 SSSMKPSIPNNYPAYSEVRDSTAVQVKMNNFDLNDIYIDSDDGAEDIERSPVPTNMGTSS 420
Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLV 452
+DCPSW++QDS QSSPPQTSGNSDSASAQSPSSS DAQSRTDRI+FKLFGKEPNDFPLV
Sbjct: 421 LDCPSWIQQDSHQSSPPQTSGNSDSASAQSPSSSSGDAQSRTDRIIFKLFGKEPNDFPLV 480
Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
LRAQILDWLSHSP+D+ESYIRPGCVILTIYLRQAEAAWEELCC+L+ SLSRLLD+S+++F
Sbjct: 481 LRAQILDWLSHSPTDIESYIRPGCVILTIYLRQAEAAWEELCCNLSSSLSRLLDVSDNAF 540
Query: 513 WTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGIN 572
W +GW Y RVQHQIAFIYNGQVV+DTSLP RSNN+SKI SVKPIA+PA+ERAQF +KGIN
Sbjct: 541 WRTGWAYIRVQHQIAFIYNGQVVVDTSLPLRSNNHSKIASVKPIAIPAAERAQFVIKGIN 600
Query: 573 LGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIED 632
L R ATRLLCAVEGKYM+QE T E++DD+D DELQC+ F CSIP V+GRGFIEIED
Sbjct: 601 LSRPATRLLCAVEGKYMLQENTEEMMDDIDNINAHDELQCIKFCCSIPMVSGRGFIEIED 660
Query: 633 HGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLF 692
HGFSS+FFPFIVAEEDVC EIRMLE LEF TDAD+ GKI+ KNQAMDFI+EIGWL
Sbjct: 661 HGFSSSFFPFIVAEEDVCLEIRMLEGTLEFVGTDADLGGSGKIEAKNQAMDFINEIGWLL 720
Query: 693 HRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752
HRSQ SRLGHL+P TDLFPL RFKWL+EFSMDHEWCAVV KLL+IL +G V GEH SL
Sbjct: 721 HRSQLHSRLGHLNPCTDLFPLSRFKWLMEFSMDHEWCAVVTKLLNILHNGIVGTGEHSSL 780
Query: 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIG 812
+LAL+E+GLLHRAVRKNSR LV+LLLR+VP ++ G NK VDG H FLFRPDV G
Sbjct: 781 NLALSEMGLLHRAVRKNSRSLVELLLRYVP----EKSGPGNKLPVDGSHVNFLFRPDVTG 836
Query: 813 PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872
PAGLTP+HIAAGKDGSEDVLDALTDDPGMVG+EAWK A DS+G TPE YARLRGHYSYIH
Sbjct: 837 PAGLTPLHIAAGKDGSEDVLDALTDDPGMVGVEAWKKAHDSTGFTPEGYARLRGHYSYIH 896
Query: 873 LVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQK 932
LVQKKINKRP GHVV+DI G + + N+ QKQN TASFE+GQ VR Q +CKLCHQK
Sbjct: 897 LVQKKINKRPAAGHVVLDIPGTLSECNVNQKQNEGVTASFEVGQPAVRSIQRSCKLCHQK 956
Query: 933 LGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
L Y TA RSL+Y+PAMLSMVAIAAVCVCVALLFKSCPEV+YVFRPFRWE+LD+GTS
Sbjct: 957 LDYGTAGRSLLYRPAMLSMVAIAAVCVCVALLFKSCPEVVYVFRPFRWELLDFGTS 1012
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1395 bits (3612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 723/1007 (71%), Positives = 823/1007 (81%), Gaps = 29/1007 (2%)
Query: 1 METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
ME + GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++ +QFF
Sbjct: 1 MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60
Query: 61 PLA-----VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKL 115
P G SSNSSSSCSDEVNLGIE KRE+EK+RR +VV+D N G LSLKL
Sbjct: 61 PHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDND---ETGTLSLKL 117
Query: 116 GGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMH 175
GG+GH +SERE+GNW G+SGKKTK G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMH
Sbjct: 118 GGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMH 177
Query: 176 SKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSP 235
SKA ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA NG+S
Sbjct: 178 SKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSL 237
Query: 236 NNDQTSGYLLISLLRILSNMHSS-RSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE 294
N+DQ SGYLLISLLRILSNMHS+ +SDQ DQDLLSHLLR LAS G NG R ISGLLQE
Sbjct: 238 NDDQASGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQE 297
Query: 295 HQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQD 353
Q +LN+ S GN+EVV A L NG Q P P + ++P+ LP E +
Sbjct: 298 SQ-LLNDGISVGNTEVVSALLPNGSQAPPRPIKHL------KVPESEILPKGVHADEARV 350
Query: 354 GNV----------AQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQD 403
GN+ QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QD
Sbjct: 351 GNMQMTSLRDSTAGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQD 410
Query: 404 SQQSSPPQTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS 462
S QSSPPQTSGNSDSASAQSPSSS +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS
Sbjct: 411 SHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS 470
Query: 463 HSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARV 522
HSP+D+ESYIRPGC++LTIYLR E+ WEELCCDL SLSRLLD+SND+FW +GWVY RV
Sbjct: 471 HSPTDIESYIRPGCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRV 530
Query: 523 QHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLC 582
QHQIAFIYNGQVV+D SLP ++NNYSKILS+KPIA+ SE AQF VKG NL R ATRLLC
Sbjct: 531 QHQIAFIYNGQVVVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLC 590
Query: 583 AVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPF 642
A+EGKY+V+EATHEL+DD+D KE DELQ +NFSCSIP +TGRGFIE+EDHG SS+FFP
Sbjct: 591 ALEGKYLVKEATHELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPI 650
Query: 643 IVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLG 702
IVAE+DVCSEI MLES +E D D GK++TKNQAMDFIHEIGWL HRSQ KSRLG
Sbjct: 651 IVAEKDVCSEICMLESTIEMTDIDEDGCGTGKLETKNQAMDFIHEIGWLLHRSQLKSRLG 710
Query: 703 HLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLL 762
HLDPN DLF +RFKWL+EFSMD +WCAVVKKLL I+LDGTV GE+PSL LA E+GLL
Sbjct: 711 HLDPNADLFSFKRFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLL 770
Query: 763 HRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIA 822
HRAVR+NSRPLV+LLLR+VP VSD L S++K++V+G FL RPDV+GPAGLTP+HIA
Sbjct: 771 HRAVRRNSRPLVELLLRYVPERVSDVLASDDKSMVEGGRASFLLRPDVVGPAGLTPLHIA 830
Query: 823 AGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882
AG+DGSEDVLDALTDDPGMVG+EAWK+ARDS+G TPEDYARLRGHYSYIHLVQKKIN+R
Sbjct: 831 AGRDGSEDVLDALTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRL 890
Query: 883 NGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPT-QHNCKLCHQKLGYATASRS 941
GHVVVD+ + D ++ QKQN+E+T F+I +T +RP Q CK C+ K+ Y ASRS
Sbjct: 891 GNGHVVVDVPSHLSDYSVNQKQNDEATTGFQIERTTLRPIQQQQCKRCNHKVAYGNASRS 950
Query: 942 LVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
L+Y+PAMLSMVAIAAVCVCVALLFKS PEVLYVF PFRWE+LDYGTS
Sbjct: 951 LLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS 997
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480217|ref|XP_003632418.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1369 bits (3544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/995 (71%), Positives = 806/995 (81%), Gaps = 39/995 (3%)
Query: 1 METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
ME + GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++ +QFF
Sbjct: 1 MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60
Query: 61 PLA-----VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKL 115
P G SSNSSSSCSDEVNLGIE KRE+EK+RR +VV+D N G LSLKL
Sbjct: 61 PHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDND---ETGTLSLKL 117
Query: 116 GGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMH 175
GG+GH +SERE+GNW G+SGKKTK G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMH
Sbjct: 118 GGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMH 177
Query: 176 SKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSP 235
SKA ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA NG+S
Sbjct: 178 SKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSL 237
Query: 236 NNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEH 295
N+DQ SGYLLISLLRILSNMH Q DQDLLSHLLR LAS G NG R ISGLLQE
Sbjct: 238 NDDQASGYLLISLLRILSNMHY----QTKDQDLLSHLLRSLASYGGTNGSRNISGLLQES 293
Query: 296 QDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGN 355
Q +LN+ S GN+EV G P + L +E +D
Sbjct: 294 Q-LLNDGISVGNTEV--------PGIMFPIKDSLPVY----------------SEVRDST 328
Query: 356 VAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGN 415
QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QDS QSSPPQTSGN
Sbjct: 329 AGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGN 388
Query: 416 SDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRP 474
SDSASAQSPSSS +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSP+D+ESYIRP
Sbjct: 389 SDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRP 448
Query: 475 GCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQV 534
GC++LTIYLR E+ WEELCCDL SLSRLLD+SND+FW +GWVY RVQHQIAFIYNGQV
Sbjct: 449 GCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQV 508
Query: 535 VLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEAT 594
V+D SLP ++NNYSKILS+KPIA+ SE AQF VKG NL R ATRLLCA+EGKY+V+EAT
Sbjct: 509 VVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLCALEGKYLVKEAT 568
Query: 595 HELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIR 654
HEL+DD+D KE DELQ +NFSCSIP +TGRGFIE+EDHG SS+FFP IVAE+DVCSEI
Sbjct: 569 HELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPIIVAEKDVCSEIC 628
Query: 655 MLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714
MLES +E D D GK++TKNQAMDFIHEIGWL HRSQ KSRLGHLDPN DLF +
Sbjct: 629 MLESTIEMTDIDEDGCGTGKLETKNQAMDFIHEIGWLLHRSQLKSRLGHLDPNADLFSFK 688
Query: 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLV 774
RFKWL+EFSMD +WCAVVKKLL I+LDGTV GE+PSL LA E+GLLHRAVR+NSRPLV
Sbjct: 689 RFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLLHRAVRRNSRPLV 748
Query: 775 DLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834
+LLLR+VP VSD L S++K++V+G FL RPDV+GPAGLTP+HIAAG+DGSEDVLDA
Sbjct: 749 ELLLRYVPERVSDVLASDDKSMVEGGRASFLLRPDVVGPAGLTPLHIAAGRDGSEDVLDA 808
Query: 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGV 894
LTDDPGMVG+EAWK+ARDS+G TPEDYARLRGHYSYIHLVQKKIN+R GHVVVD+
Sbjct: 809 LTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRLGNGHVVVDVPSH 868
Query: 895 VPDSNIYQKQNNESTASFEIGQTPVRPT-QHNCKLCHQKLGYATASRSLVYKPAMLSMVA 953
+ D ++ QKQN+E+T F+I +T +RP Q CK C+ K+ Y ASRSL+Y+PAMLSMVA
Sbjct: 869 LSDYSVNQKQNDEATTGFQIERTTLRPIQQQQCKRCNHKVAYGNASRSLLYRPAMLSMVA 928
Query: 954 IAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
IAAVCVCVALLFKS PEVLYVF PFRWE+LDYGTS
Sbjct: 929 IAAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS 963
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499594|ref|XP_003518623.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1323 bits (3425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/1019 (67%), Positives = 807/1019 (79%), Gaps = 40/1019 (3%)
Query: 1 METRFRGEAHHFYGMN-SMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIG--R 57
ME +F EA+HFYG+ S DLR VGK++ EWDLNDW+WDGDLFIAS+LNP P + +G +
Sbjct: 1 MEAKFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQ 60
Query: 58 QFFPLA----VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
QFFP+ V ++SSS S+EV+ +E +KKRR +V+ED E G LSL
Sbjct: 61 QFFPIGSGIPVAGGPSNSSSTSEEVDPRDPKANKEGDKKRRVIVLEDDGLNE-EGGTLSL 119
Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
KLGG+ + +RE+G+W G++GKK++ G +S+RAVCQVEDC ADLS AKDYHRRHKVCE
Sbjct: 120 KLGGHASAVVDREVGSWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCE 179
Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
MHSKASRALVGN MQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHNKRRRKTN +AV NGS
Sbjct: 180 MHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGS 239
Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
S N+DQTS YLLISLL+ILSNMHS RSDQ TDQDLL+H+LR LAS GE GG+ I+ LL+
Sbjct: 240 SLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGGKNIANLLR 299
Query: 294 EHQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQ 352
E +++L E S+ SE++ +NG QG P+ RQ ++++M QQV HDA GA DQ
Sbjct: 300 EPENLLREDGSSRKSEMMSTLFSNGSQGSPSNIRQHETVSMAKMQQQVMHAHDA-GASDQ 358
Query: 353 ---------------------DGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGT 391
D QIKMNNFDLND+YIDSDDG ED+ER PV NL T
Sbjct: 359 QITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVT 418
Query: 392 SSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFP 450
SS+D P W +QDS QSSPPQTSGNSDSASAQSPSSSS +AQSRTDRIVFKLFGKEPNDFP
Sbjct: 419 SSLDYP-WAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFP 477
Query: 451 LVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSND 510
LVLRAQILDWLSHSP+DMESYIRPGC++LTIYLRQAEA WEELC DLT SL+RLLD+S+D
Sbjct: 478 LVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDD 537
Query: 511 SFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKG 570
+FW +GWV+ RVQHQ+AFI+NGQVV+DTSLP RSNNYSKIL+V PIAVPAS+RAQF VKG
Sbjct: 538 TFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKG 597
Query: 571 INLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEI 630
+NL R ATRL+CA+EGKY+V E H +D KE DELQCV FSCS+P + GRGFIEI
Sbjct: 598 VNLIRPATRLMCALEGKYLVCEDDHMSMDQCS--KEPDELQCVQFSCSVPVMNGRGFIEI 655
Query: 631 EDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGW 690
ED G SS+FFPFIV EEDVCSEI LE LE + TD D+E GKI KNQAMDFIHE+GW
Sbjct: 656 EDQGLSSSFFPFIVVEEDVCSEICTLEPLLELSETDPDIEGTGKIKAKNQAMDFIHEMGW 715
Query: 691 LFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750
L HRSQ K R+ + DLFPL+RFKWLIEFSMDH+WCA V+KLL++L DGTV+ G+HP
Sbjct: 716 LLHRSQLKLRMV---SSVDLFPLKRFKWLIEFSMDHDWCAAVRKLLNLLFDGTVNTGDHP 772
Query: 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDV 810
SL LAL+E+GLLH+AVR+NS+ LV+LLLR+VP +SD+LG E KALVDG ++ FLFRPDV
Sbjct: 773 SLYLALSEMGLLHKAVRRNSKHLVELLLRYVPENISDKLGPEEKALVDGENQTFLFRPDV 832
Query: 811 IGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870
G AGLTP+HIAAGKDGSEDVLDALT+DP MVGIEAWKNARDS+GSTPEDYARLRGHY+Y
Sbjct: 833 DGTAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAY 892
Query: 871 IHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCH 930
IHLVQKKINK+ HVVV+I + ++N +KQN ST FEIG+ VR Q +CKLC
Sbjct: 893 IHLVQKKINKKQGAAHVVVEIPSNMTENNTNKKQNELSTI-FEIGKPEVRRGQGHCKLCD 951
Query: 931 QKLGYATA-SRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
++ TA RS+VY+PAMLSMVAIAAVCVCVALLFKS PEV+ +FRPFRWE LD+GTS
Sbjct: 952 NRISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461697|ref|XP_004148578.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1296 bits (3355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1019 (66%), Positives = 799/1019 (78%), Gaps = 37/1019 (3%)
Query: 1 METRFRGEAHHFYGMNSMDLRA-VGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQF 59
ME + GEA YGM +MDLRA VGK+ LEWDLNDWKWDGDLFIA LN + ++ RQ
Sbjct: 1 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQL 60
Query: 60 FPLAVG------NSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
FP+ G SSNSSSSCSDE N+GIE GKREVEK+RR V+ED N + A LSL
Sbjct: 61 FPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLND-EARTLSL 119
Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
K+GGNG + ER+ G+W G+SGKKTK GG+S+RAVCQVEDCGADLSNAKDYHRRHKVCE
Sbjct: 120 KVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCE 179
Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
HSKAS ALV NVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK NPD V NG+
Sbjct: 180 THSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGN 239
Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
SP ++QTS YLL++LLRIL+N+HS+ S+Q TDQDLLSHL+R LA + E+GG+ +SG+L
Sbjct: 240 SPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILH 299
Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
E Q++LN G S++V FL+NG P +Q + + E P Q RG
Sbjct: 300 EPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAI----GRGGDTPA 355
Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
+E +D V Q KM NFDLND Y+DSDDG ED+ER +P ++GTSS
Sbjct: 356 ISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSS 415
Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPLV 452
++CPSWV+QDS QSSPPQTSGNSDSASAQSPSSS+ +AQSRTDRI+ KLFGK PNDFP V
Sbjct: 416 LECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHV 475
Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
LRAQ+LDWLSHSP+++ESYIRPGCV+LT+Y+RQ EAAW+ LC DL+ S +RLLD+S+D+F
Sbjct: 476 LRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAF 535
Query: 513 WTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGIN 572
W +GWVY RVQHQIAF+Y GQVV+DTSLP R+NNY +I SV P+AV S++A F VKGIN
Sbjct: 536 WKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGIN 595
Query: 573 LGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIED 632
L + TRLLCA+EGKY+ QEA+ E + D K D+ QCV FSCSIP V GRGFIE+ED
Sbjct: 596 LSQPTTRLLCAIEGKYLSQEASDESTESDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVED 655
Query: 633 HGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLF 692
GFSS+ FPFIVAEEDVCSEI L+SALE T ++ +++ ++ AM+FIHEIGWLF
Sbjct: 656 DGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLF 715
Query: 693 HRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752
HR+Q KSRLGHLDPN +LF L RFKWL+EFSMDH+WCAVVKKLL IL DGTV G HPSL
Sbjct: 716 HRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSL 775
Query: 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIG 812
+LAL E+GLLHRAVRKNSR LV+LLLR+ P +V D SE+ A VDG FLF+P+V+G
Sbjct: 776 NLALMEMGLLHRAVRKNSRSLVELLLRY-PSKVKDASSSEDSASVDGETDSFLFKPNVVG 834
Query: 813 PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872
PAGLTP+HIAAGKD SEDVLDALT+DPGMVGIEAWK+ARDS+GSTPEDYARLRGHYSYI
Sbjct: 835 PAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIR 894
Query: 873 LVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTAS-FEIGQTPVRPTQHNCKLCHQ 931
LVQ+KINKR GHVV+DI + D + QKQN + T+S FEIG+T ++P+Q +CKLC +
Sbjct: 895 LVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVR 954
Query: 932 K-LGYATASR-SLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
K LG T+S SLVY+PAMLSMVAIAAVCVCVALLFKS PEVLYVFRPFRWE+LDYGTS
Sbjct: 955 KPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1013
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518123|ref|XP_004166093.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1019 (66%), Positives = 797/1019 (78%), Gaps = 36/1019 (3%)
Query: 1 METRFRGEAHHFYGMNSMDLRA-VGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQF 59
ME + GEA YGM +MDLRA VGK+ LEWDLNDWKWDGDLFIA LN + ++ RQ
Sbjct: 1 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQL 60
Query: 60 FPLAVG------NSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
FP+ G SSNSSSSCSDE N+GIE GKREVEK+RR V+ED N + A LSL
Sbjct: 61 FPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLND-EARTLSL 119
Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
K+GGNG + ER+ G+W G+SGKKTK GG+S+RAVCQVEDCGADLSNAKDYHRRHKVCE
Sbjct: 120 KVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCE 179
Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
HSKAS ALV NVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK NPD V NG+
Sbjct: 180 THSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGN 239
Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
SP ++QTS YLL++LLRIL+N+HS+ S+Q TDQDLLSHL+R LA + E+G + +SG+L
Sbjct: 240 SPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGXKNLSGILH 299
Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
E Q++LN G S++V FL+NG P +Q + + E P Q RG
Sbjct: 300 EPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAI----GRGGDTPA 355
Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
+E +D V Q KM NFDLND Y+DSDDG ED+ER +P ++GTSS
Sbjct: 356 ISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSS 415
Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPLV 452
++CPSWV+QDS QSSPPQTSGNSDSASAQSPSSS+ +AQSRTDRI+ KLFGK PNDFP V
Sbjct: 416 LECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHV 475
Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
LRAQ+LDWLSHSP+++ESYIRPGCV+LT+Y+RQ EAAW+ LC DL+ S +RLLD+S+D+F
Sbjct: 476 LRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAF 535
Query: 513 WTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGIN 572
W +GWVY RVQHQIAF+Y GQVV+DTSLP R+NNY +I SV P+AV S++A F VKGIN
Sbjct: 536 WKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGIN 595
Query: 573 LGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIED 632
L + TRLLCA+EGKY+ QEA+ E + D K D+ QCV FSCSIP V GRGFIE+ED
Sbjct: 596 LSQPTTRLLCAIEGKYLSQEASDESTESDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVED 655
Query: 633 HGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLF 692
GFSS+ FPFIVAEEDVCSEI L+SALE T ++ +++ ++ AM+FIHEIGWLF
Sbjct: 656 DGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLF 715
Query: 693 HRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752
HR+Q KSRLGHLDPN +LF L RFKWL+EFSMDH+WCAVVKKLL IL DGTV G HPSL
Sbjct: 716 HRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSL 775
Query: 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIG 812
+LAL E+GLLHRAVRKNSR LV+LLLR+ +V D SE+ A VDG FLF+P+V+G
Sbjct: 776 NLALMEMGLLHRAVRKNSRSLVELLLRYPXQKVKDASSSEDSASVDGETDSFLFKPNVVG 835
Query: 813 PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872
PAGLTP+HIAAGKD SEDVLDALT+DPGMVGIEAWK+ARDS+GSTPEDYARLRGHYSYI
Sbjct: 836 PAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIR 895
Query: 873 LVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTAS-FEIGQTPVRPTQHNCKLCHQ 931
LVQ+KINKR GHVV+DI + D + QKQN + T+S FEIG+T ++P+Q +CKLC +
Sbjct: 896 LVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVR 955
Query: 932 K-LGYATASR-SLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
K LG T+S SLVY+PAMLSMVAIAAVCVCVALLFKS PEVLYVFRPFRWE+LDYGTS
Sbjct: 956 KPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1014
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442095|ref|XP_003591325.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355480373|gb|AES61576.1| SQUAMOSA promoter binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1274 bits (3296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1018 (66%), Positives = 797/1018 (78%), Gaps = 45/1018 (4%)
Query: 1 METRFRGEAHHFYGMN-SMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNEN--IGR 57
M R E +HFYG+ S DL +GK++ EW+LNDW+WDGDLFIAS++N E+ +G+
Sbjct: 1 MGERLGAENYHFYGVGGSSDLSGMGKRSREWNLNDWRWDGDLFIASRVNQVQAESLRVGQ 60
Query: 58 QFFPLA-----VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLS 112
QFFPL VG SSN+SSSCS+E +L E G +E EKKRR +V+ED + AG LS
Sbjct: 61 QFFPLGSGIPVVGGSSNTSSSCSEEGDL--EKGNKEGEKKRRVIVLED-DGLNDKAGALS 117
Query: 113 LKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVC 172
L L G+ P+ ER+ GKK++ GG+S+RAVCQVEDCGADLS KDYHRRHKVC
Sbjct: 118 LNLAGHVSPVVERD--------GKKSRGAGGTSNRAVCQVEDCGADLSRGKDYHRRHKVC 169
Query: 173 EMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANG 232
EMHSKASRALVGN MQRFCQQCSRFH+L+EFDEGKRSCRRRLAGHNKRRRKTN +AV NG
Sbjct: 170 EMHSKASRALVGNAMQRFCQQCSRFHILEEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNG 229
Query: 233 SSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLL 292
S N+DQTS YLLISLL+ILSNMHS RSDQ TDQDLL+HLLR LAS E G + +S LL
Sbjct: 230 SPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLL 289
Query: 293 QEHQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAED 351
+E +++L E S+ NS +V A +NG QG PT Q ++++M Q++ HD R ++
Sbjct: 290 REQENLLREGGSSRNSGMVSALFSNGSQGSPTVITQHQPVSMNQMQQEMVHTHDVRTSDH 349
Query: 352 Q-------------------DGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTS 392
Q + Q KMNNFDLND+Y+DSDDGTED+ER PV NL TS
Sbjct: 350 QLISSIKPSISNSPPAYSETRDSSGQTKMNNFDLNDIYVDSDDGTEDLERLPVSTNLATS 409
Query: 393 SIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPL 451
S+D P W +QDS QSSP QTSGNSDSASAQSPSSSS +AQSRTDRIVFKLFGKEPN+FPL
Sbjct: 410 SVDYP-WTQQDSHQSSPAQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPL 468
Query: 452 VLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDS 511
VLRAQILDWLS SP+D+ESYIRPGC++LTIYLRQAEA WEELCCDLT SL +LLD+S+D+
Sbjct: 469 VLRAQILDWLSQSPTDIESYIRPGCIVLTIYLRQAEAVWEELCCDLTSSLIKLLDVSDDT 528
Query: 512 FWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGI 571
FW +GWV+ RVQHQ+AFI+NGQVV+DTSLP RSNNYSKI +V PIAVPAS+RAQF VKG+
Sbjct: 529 FWKTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGV 588
Query: 572 NLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIE 631
NL R ATRL+CA+EGKY+V E HE D +ELDELQC+ FSCS+P GRGFIEIE
Sbjct: 589 NLMRPATRLMCALEGKYLVCEDAHESTDQYS--EELDELQCIQFSCSVPVSNGRGFIEIE 646
Query: 632 DHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWL 691
D G SS+FFPFIVAEEDVC+EIR+LE LE + TD D+E GKI K+QAMDFIHE+GWL
Sbjct: 647 DQGLSSSFFPFIVAEEDVCTEIRVLEPLLESSETDPDIEGTGKIKAKSQAMDFIHEMGWL 706
Query: 692 FHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751
HRSQ K R+ +L+ DLFPL+RF WL+EFSMDH+WCAVVKKLL++LLD TV+ G+HP+
Sbjct: 707 LHRSQLKYRMVNLNSGVDLFPLQRFTWLMEFSMDHDWCAVVKKLLNLLLDETVNKGDHPT 766
Query: 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVI 811
L AL+E+GLLHRAVR+NS+ LV+LLLR+VP SD LG E+KALV G + +LFRPD +
Sbjct: 767 LYQALSEMGLLHRAVRRNSKQLVELLLRYVPDNTSDELGPEDKALVGGKNHSYLFRPDAV 826
Query: 812 GPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871
GPAGLTP+HIAAGKDGSEDVLDALT+DP MVGIEAWKNARDS+GSTPEDYARLRGHY+YI
Sbjct: 827 GPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYI 886
Query: 872 HLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQ 931
HLVQKKINK HVVV+I + +SN KQ NES S EIG+ VR +Q NCKLC
Sbjct: 887 HLVQKKINKTQGAAHVVVEIPSNMTESNKNPKQ-NESFTSLEIGKAEVRRSQGNCKLCDT 945
Query: 932 KLGYATA-SRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
K+ TA RS+VY+PAMLSMVAIAAVCVCVALLFKS PEVLY+FRPFRWE LD+GTS
Sbjct: 946 KISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS 1003
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511495|ref|XP_003626036.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355501051|gb|AES82254.1| SQUAMOSA promoter binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1227 bits (3175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/1026 (63%), Positives = 761/1026 (74%), Gaps = 78/1026 (7%)
Query: 8 EAHHFYGMN--SMDLRAVGKKTLEWDLNDWKWDGDLFIA-SKLNPAPNENIGRQFFPLAV 64
EA YG S DLRA+GK + EWDLN+WKWD LFIA SKL P P RQF P+ V
Sbjct: 2 EAFQLYGNGGGSSDLRAMGKNSKEWDLNNWKWDSHLFIATSKLTPVPEH---RQFLPIPV 58
Query: 65 GNSSNSSSS-------CSDEVNLGIENGKREVEKKRRAVVVEDHNSYEV--AAGGLSLKL 115
G S CS++++LGI K E E+KRR +VVED + G LSL L
Sbjct: 59 GGGGGGGGSNSNSSSSCSEQLDLGICQVK-EGERKRRVIVVEDELGLGLNKEGGNLSLNL 117
Query: 116 GGNGHPLSEREMGNWAGSSGKKTKF-GGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEM 174
GG + W G++GKK++ GGGSSSRA CQVEDC ADL+NAKDYHRRHKVCE+
Sbjct: 118 GGG--------VATWEGNNGKKSRVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEI 169
Query: 175 HSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSS 234
HSKAS+ALVGN MQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHNKRRRKTN DAV NGSS
Sbjct: 170 HSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSS 229
Query: 235 PNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE 294
PN+DQT+ RS+Q DQDLL+HLLR LA+ GE GGR +S LL+E
Sbjct: 230 PNDDQTT----------------DRSNQTADQDLLTHLLRSLANQNGEQGGRNLSNLLRE 273
Query: 295 HQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQ- 352
+++L E + +G SE+V + NG QG PT Q ++SE+ QV HDAR A+ Q
Sbjct: 274 PENLLKEGSLSGKSEMVSTLVTNGSQGSPTVTVQNQTVSISEIQHQVMHSHDARVADQQT 333
Query: 353 -------------------DGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
D Q KMN+FDLND+YIDSDDG ED+ER PV NLG SS
Sbjct: 334 TFSAKPGVSNSPPAYSEARDSTAGQTKMNDFDLNDIYIDSDDGIEDIERLPVTTNLGASS 393
Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPLV 452
+D P W++QDS QSSPPQTSGNSDSASAQSPSSS+ + Q+RTDRIVFKLFGK P DFPLV
Sbjct: 394 LDYP-WMQQDSHQSSPPQTSGNSDSASAQSPSSSTGETQNRTDRIVFKLFGKGPGDFPLV 452
Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
L+AQILDWLSHSP+D+E YIRPGCV+LTIYLRQAE WEELC DLT SL+RLL +S+D F
Sbjct: 453 LKAQILDWLSHSPTDIEGYIRPGCVVLTIYLRQAEVVWEELCFDLTSSLNRLLGVSDDDF 512
Query: 513 WTSGWVYARVQHQIAFIYNG---------QVVLDTSLPPRSNNYSKILSVKPIAVPASER 563
W +GWV+ RVQHQ+AFI+NG Q+V+DT LP RSNNY KILSV PIA+P+S+
Sbjct: 513 WRTGWVHIRVQHQMAFIFNGSNCTFSAAGQIVIDTPLPFRSNNYGKILSVSPIAIPSSKT 572
Query: 564 AQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVT 623
AQF VKGINL R ATRLLCA+EG Y+ E T E +D K+LDELQC+ FSCS+PA+
Sbjct: 573 AQFSVKGINLTRPATRLLCALEGNYLDCEDTDEPMDQCS--KDLDELQCIQFSCSVPAMN 630
Query: 624 GRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMD 683
GRGFIEIED G SS+FFPFIV EEDVCSEI +LE LE + T D E GKI KNQAMD
Sbjct: 631 GRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESSDTYPDNEGAGKIQAKNQAMD 690
Query: 684 FIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGT 743
FIHE+GWL HR Q KS + L+ + DLFPL RFKWL+EFS+DH+WCAVVKKLL+++LDGT
Sbjct: 691 FIHEMGWLLHRRQIKSSV-RLNSSMDLFPLDRFKWLMEFSVDHDWCAVVKKLLNLMLDGT 749
Query: 744 VSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKG 803
VS G+H SL LAL+ELGLLHRAVR+NSR LV+LLLRFVP +SD+LG E+KALV+G ++
Sbjct: 750 VSTGDHTSLYLALSELGLLHRAVRRNSRQLVELLLRFVPQNISDKLGPEDKALVNGENQN 809
Query: 804 FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYAR 863
FLFRPD +GPAGLTP+HIAAGKDGSEDVLDALT+DP MVGIEAW +ARDS+GSTPEDYAR
Sbjct: 810 FLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWNSARDSTGSTPEDYAR 869
Query: 864 LRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQ 923
LRGHY+YIHLVQKKINK G HVVVDI + + QK+ +ES +F+IG V+ +
Sbjct: 870 LRGHYTYIHLVQKKINKSQGGAHVVVDIPSIPTKFDTSQKK-DESCTTFQIGNAEVKKVR 928
Query: 924 HNCKLCHQKLGYATASR-SLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEM 982
+CKLC KL TA R S VY+PAMLSMVAIAAVCVCVALLFKS PEVLY+FRPFRWE
Sbjct: 929 KDCKLCDHKLSCRTAVRKSFVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWES 988
Query: 983 LDYGTS 988
LDYGTS
Sbjct: 989 LDYGTS 994
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744051|emb|CBI37021.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1213 bits (3138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/994 (65%), Positives = 730/994 (73%), Gaps = 140/994 (14%)
Query: 1 METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
ME + GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++ +QFF
Sbjct: 1 MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60
Query: 61 PLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGH 120
P I KRE+EK+RR +VV+D N G LSLKLGG+GH
Sbjct: 61 PHGSA----------------IPKRKRELEKRRRVIVVQDDND---ETGTLSLKLGGHGH 101
Query: 121 PLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASR 180
+SERE+GNW G+SGKKTK G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMHSKA
Sbjct: 102 SVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKAGC 161
Query: 181 ALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQT 240
ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA NG+S N+DQ
Sbjct: 162 ALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSLNDDQA 221
Query: 241 SGYLLISLLRILSNMHSS-RSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDML 299
SGYLLISLLRILSNMHS+ +SDQ DQDLLSHLLR LAS G NG R ISGLLQE Q +L
Sbjct: 222 SGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQESQ-LL 280
Query: 300 NERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVA-- 357
N+ S GN+EVV A L NG E + GN+
Sbjct: 281 NDGISVGNTEVVSALLPNG---------------------------VHADEARVGNMQMT 313
Query: 358 --QIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGN 415
QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QDS QSSPPQTSGN
Sbjct: 314 SWQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGN 373
Query: 416 SDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRP 474
SDSASAQSPSSS +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSP+D+ESYIRP
Sbjct: 374 SDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRP 433
Query: 475 GCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQV 534
GC++LTIYLR E+ WEELCCDL SLSRLLD+SND+FW +GWVY RVQHQIAFIYNGQV
Sbjct: 434 GCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQV 493
Query: 535 VLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEAT 594
V+D SLP ++NNYSKILS+KPIA+ SE AQF VKG NL R ATRLLCA+EGKY+V+EAT
Sbjct: 494 VVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLCALEGKYLVKEAT 553
Query: 595 HELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIR 654
HEL+DD+D KE DELQ +NFSCSIP +TGRGFIE+EDHG SS+FFP IVAE+DVCSEI
Sbjct: 554 HELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPIIVAEKDVCSEIC 613
Query: 655 MLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714
MLES +E D D G+ LF +
Sbjct: 614 MLESTIEMTDIDED--------------------GY-------------------LFSFK 634
Query: 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLV 774
RFKWL+EFSMD +WCAVVKKLL I+LDGTV GE+PSL LA E+GLLHRAVR+NSRPLV
Sbjct: 635 RFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLLHRAVRRNSRPLV 694
Query: 775 DLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834
+LLLR+VP G FL RPDV+GPAGLTP+HIAAG+DGSEDVLDA
Sbjct: 695 ELLLRYVPER--------------GGRASFLLRPDVVGPAGLTPLHIAAGRDGSEDVLDA 740
Query: 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGV 894
LTDDPGMVG+EAWK+ARDS+G TPEDYARLRGHYSYIHLVQKKIN+R GHVVVD
Sbjct: 741 LTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRLGNGHVVVD---- 796
Query: 895 VPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAI 954
CK C+ K+ Y ASRSL+Y+PAMLSMVAI
Sbjct: 797 ------------------------------QCKRCNHKVAYGNASRSLLYRPAMLSMVAI 826
Query: 955 AAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 988
AAVCVCVALLFKS PEVLYVF PFRWE+LDYGTS
Sbjct: 827 AAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS 860
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432161|ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/1042 (58%), Positives = 747/1042 (71%), Gaps = 67/1042 (6%)
Query: 1 METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
ME +F G+A+H G DL+ +GK+TLEWDLN WKWDGDLF A++LN P++ +QFF
Sbjct: 1 MEHKFGGKANHLRGPTVSDLKKLGKRTLEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFF 60
Query: 61 PLA---VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGG 117
P A V + SSS SDE+ + GKRE+EKKRR VV+ED E+ G L+LKLG
Sbjct: 61 PPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVVVLEDEACDEL--GSLNLKLGA 118
Query: 118 NGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSK 177
+P+ E E+ SGKKTK G + +RAVCQVEDC ADL NAKDYHRRHKVC+MHSK
Sbjct: 119 QVYPIMEGEV-----KSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSK 173
Query: 178 ASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNN 237
AS+ALVGNVMQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHN+RRRKT+PD V NG S N+
Sbjct: 174 ASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLND 233
Query: 238 DQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQD 297
++ YLL+S+LRILSNMH++ SDQ DQDLLSH+L+ LAS G R I GLLQ QD
Sbjct: 234 ERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQD 293
Query: 298 MLNERTSAGNSEVVQAFLANG-------------------QGCPTPFRQQLNATVSEMPQ 338
+LN TS G +E V ++NG Q P L ATV EM +
Sbjct: 294 LLNAGTSVGTAEKVPDMVSNGLVPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEMAE 353
Query: 339 QVSLPHDAR-----------------------GAEDQDGNV-AQIKMNNFDLNDVYIDSD 374
+ DA+ E+ G +IK+NNFDLN+VY DS
Sbjct: 354 KRVFTDDAQVGMLQNLSGTQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQ 413
Query: 375 DGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSR 433
D E+ ERS PAN GT +D V+QDS +SSPPQTS NSDS SA+S S+SS +AQSR
Sbjct: 414 DCIENPERSYGPANPGTRPLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSR 473
Query: 434 TDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEEL 493
TDRIVFKLFGK+P+DFPLV+R Q+LDWLSH+P+++ES+IRPGC+ILTIYLR ++ WEEL
Sbjct: 474 TDRIVFKLFGKDPSDFPLVMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEEL 533
Query: 494 CCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSV 553
CCDL SLSRLLD+S DSFW +GWVY RVQ+++AFIY+GQVVLDT LP +S+N +I S+
Sbjct: 534 CCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLDTPLPFKSHN-CRISSI 592
Query: 554 KPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCV 613
KPIAVP SE+AQF VKG NL SATRLLCA+EG+Y+VQE +EL + D F E D+LQC+
Sbjct: 593 KPIAVPVSEQAQFVVKGFNLAGSATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCL 652
Query: 614 NFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVER-F 672
+F CS+P ++GRGFIE+EDHG +S+FFPFIVAE+DVCSEI MLE ++ T D+ R
Sbjct: 653 SFPCSVPNISGRGFIEVEDHGLNSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRET 712
Query: 673 GKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVV 732
GK+ K QA+DFIHE+GWL HR+ K RLG +DPN DLFP +RFK L+EFS+DH+WCAVV
Sbjct: 713 GKMQAKYQALDFIHEMGWLLHRNYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVV 772
Query: 733 KKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792
KKLL I+ GTV+ GEHPS+++AL ++ LLH AVR+N RP+V+LLLRF+P ++ D+ GS
Sbjct: 773 KKLLGIVFSGTVNAGEHPSIEIALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSN 832
Query: 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD 852
+K + +LF+PD +GPAGLTP+HIAA DGSE+VLDALTDDP +VGIEAWK+ARD
Sbjct: 833 DKRWPNS-GSNYLFKPDFVGPAGLTPLHIAASMDGSENVLDALTDDPELVGIEAWKSARD 891
Query: 853 SSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNE----S 908
GSTP DYA LRGH SYI LVQKKIN + N VV+DI D N K ++
Sbjct: 892 KVGSTPNDYACLRGHNSYIQLVQKKINNKLN-RRVVLDIPDAPLDCNTKPKPSDGLKSVR 950
Query: 909 TASFEIGQTPVRPTQHNCKLCHQKLGYATA--SRSLVYKPAMLSMVAIAAVCVCVALLFK 966
S +I + R QH CKLC QKL Y SL Y+PAMLSMVAIAAVCVCVALLFK
Sbjct: 951 VPSLQIEKQAAR--QH-CKLCEQKLAYGDTRMRTSLAYRPAMLSMVAIAAVCVCVALLFK 1007
Query: 967 SCPEVLYVFRPFRWEMLDYGTS 988
S PEVLYVFRPFRWE+L YG+S
Sbjct: 1008 SSPEVLYVFRPFRWELLKYGSS 1029
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 988 | ||||||
| TAIR|locus:2101402 | 927 | SPL12 "squamosa promoter-bindi | 0.518 | 0.552 | 0.573 | 3.8e-255 | |
| TAIR|locus:2041329 | 881 | SPL1 "squamosa promoter bindin | 0.511 | 0.573 | 0.506 | 2e-211 | |
| TAIR|locus:2037355 | 1035 | SPL14 "squamosa promoter bindi | 0.460 | 0.439 | 0.336 | 1.9e-106 | |
| TAIR|locus:2011706 | 988 | AT1G76580 [Arabidopsis thalian | 0.335 | 0.335 | 0.328 | 4.1e-78 | |
| TAIR|locus:504956101 | 333 | SPL8 "squamosa promoter bindin | 0.081 | 0.243 | 0.691 | 7.1e-27 | |
| TAIR|locus:2057656 | 131 | SPL3 "squamosa promoter bindin | 0.079 | 0.603 | 0.683 | 9.1e-27 | |
| TAIR|locus:2087105 | 181 | SPL5 "squamosa promoter bindin | 0.086 | 0.469 | 0.658 | 1.2e-26 | |
| TAIR|locus:2009675 | 174 | SPL4 "squamosa promoter bindin | 0.086 | 0.488 | 0.651 | 3.1e-26 | |
| TAIR|locus:2059974 | 375 | SPL9 "squamosa promoter bindin | 0.081 | 0.216 | 0.641 | 4.2e-26 | |
| TAIR|locus:2026428 | 405 | AT1G69170 [Arabidopsis thalian | 0.075 | 0.185 | 0.706 | 5.1e-26 |
| TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1496 (531.7 bits), Expect = 3.8e-255, Sum P(3) = 3.8e-255
Identities = 303/528 (57%), Positives = 377/528 (71%)
Query: 147 RAVC-QVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDE 205
RA+C QV++CGADLS KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFDE
Sbjct: 123 RAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDE 182
Query: 206 GKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTD 265
GKRSCRRRLAGHNKRRRK NPD + NG+S ++DQTS Y+LI+LL+ILSN+HS++SDQ D
Sbjct: 183 GKRSCRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYMLITLLKILSNIHSNQSDQTGD 242
Query: 266 QDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPF 325
QDLLSHLL+ L S AGE+ GR + GLLQ L + GN + A L+ Q P
Sbjct: 243 QDLLSHLLKSLVSQAGEHIGRNLVGLLQGGGG-LQASQNIGN---LSALLSLEQA---PR 295
Query: 326 RQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERS-P 384
+ +VSE P Q + A+ D + Q+K+N+FDLND+YIDSDD T D+ERS P
Sbjct: 296 EDIKHHSVSETPWQEVYANSAQERVAPDRSEKQVKVNDFDLNDIYIDSDD-TTDIERSSP 354
Query: 385 VPANLGTSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRTDRIVFKLFGK 444
P N TSS+D R + RTDRIVFKLFGK
Sbjct: 355 PPTNPATSSLDYHQDSRQSSPPQTSRR--NSDSASDQSPSSSSGDAQSRTDRIVFKLFGK 412
Query: 445 EPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFXXXXX 504
EPNDFP+ LR QIL+WL+H+P+DMESYIRPGC++LTIYLRQ EA+WEELCCDL+F
Sbjct: 413 EPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRL 472
Query: 505 XXXXXXXFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERA 564
WT GW+Y RVQ+Q+AF +NGQVVLDTSLP RS++YS+I++V+P+AV +++A
Sbjct: 473 LDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYSQIITVRPLAV--TKKA 530
Query: 565 QFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTG 624
QF VKGINL R TRLLC VEG ++VQEAT +++ D KE +E+ VNFSC +P +G
Sbjct: 531 QFTVKGINLRRPGTRLLCTVEGTHLVQEATQGGMEERDDLKENNEIDFVNFSCEMPIASG 590
Query: 625 RGFIEIEDHG-FSSTFFPFIVAE-EDVCSEIRMLESALEFNRTDADVE 670
RGF+EIED G SS+FFPFIV+E ED+CSEIR LES LEF TD+ ++
Sbjct: 591 RGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTLEFTGTDSAMQ 638
|
|
| TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1276 (454.2 bits), Expect = 2.0e-211, Sum P(3) = 2.0e-211
Identities = 273/539 (50%), Positives = 349/539 (64%)
Query: 260 SDQRTDQDLLSHLLRGLASPAGENGGRGI-SGLLQEHQDMLNERTSAGNSEVVQAFLANG 318
SD + LL LL+ L++ G + + S LL+ E+ +V+ L G
Sbjct: 191 SDDHSSNYLLITLLKILSNMHNHTGDQDLMSHLLKSLVSHAGEQLG---KNLVELLLQGG 247
Query: 319 --QGCPTPFRQQLNATVSEMPQQVSLPHDAR--GAEDQDGNVAQIKMNNFDLNDVYIDSD 374
QG L + + PQ+ AR G ++ + Q+KMN+FDLND+YIDSD
Sbjct: 248 GSQGSLNIGNSALLG-IEQAPQEELKQFSARQDGTATENRSEKQVKMNDFDLNDIYIDSD 306
Query: 375 DGTEDVERSPVPANLGTSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRT 434
D DVERSP P N TSS+D PSW+ + RT
Sbjct: 307 D--TDVERSPPPTNPATSSLDYPSWIHQSSPPQTSR---NSDSASDQSPSSSSEDAQMRT 361
Query: 435 DRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELC 494
RIVFKLFGKEPN+FP+VLR QILDWLSHSP+DMESYIRPGC++LTIYLRQAE AWEEL
Sbjct: 362 GRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELS 421
Query: 495 CDLTFXXXXXXXXXXXXFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVK 554
DL F WT+GW+Y RVQ+Q+AF+YNGQVV+DTSL +S +YS I+SVK
Sbjct: 422 DDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVK 481
Query: 555 PIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLD-DVDGFKELDEL-QC 612
P+A+ A+E+AQF VKG+NL + TRLLC+VEGKY++QE TH+ + D FK+ E+ +C
Sbjct: 482 PLAIAATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVEC 541
Query: 613 VNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEED-VCSEIRMLESALEFNRTDADVER 671
VNFSC +P ++GRGF+EIED G SS+FFPF+V E+D VCSEIR+LE+ LEF TD+
Sbjct: 542 VNFSCDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTGTDS---- 597
Query: 672 FGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAV 731
QAMDFIHEIGWL HRS +LG DPN +FPL RF+WLIEFSMD EWCAV
Sbjct: 598 ------AKQAMDFIHEIGWLLHRS----KLGESDPNPGVFPLIRFQWLIEFSMDREWCAV 647
Query: 732 VKKLLHILLDGTVSLGEHPSLDLA-LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRL 789
++KLL++ DG V GE S A L+EL LLHRAVRKNS+P+V++LLR++P + + L
Sbjct: 648 IRKLLNMFFDGAV--GEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQQRNSL 704
|
|
| TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 1.9e-106, Sum P(3) = 1.9e-106
Identities = 166/493 (33%), Positives = 265/493 (53%)
Query: 433 RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEE 492
RT +IVFKL K+P+ P LR++I +WLS+ PS+MESYIRPGCV+L++Y+ + AAWE+
Sbjct: 504 RTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQ 563
Query: 493 LCCDLTFXXXXXXXXXXXXFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILS 552
L L FW + Q+A NG+V S R+ N +++S
Sbjct: 564 LEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSW--RTWNSPELIS 621
Query: 553 VKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQC 612
V P+AV A E V+G +L + C G YM E T + DEL
Sbjct: 622 VSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAMEVTRAVCRQTI----FDELNV 677
Query: 613 VNFSCSI--PAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVE 670
+F P GR FIE+E+ GF FP I+A +C E+ L D E
Sbjct: 678 NSFKVQNVHPGFLGRCFIEVEN-GFRGDSFPLIIANASICKELNRLGEEFHPKSQDMTEE 736
Query: 671 RFGKID----TKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDH 726
+ + ++ + + F++E+GWLF ++Q+ L +D F L RFK+L+ S++
Sbjct: 737 QAQSSNRGPTSREEVLCFLNELGWLFQKNQTSE----LREQSD-FSLARFKFLLVCSVER 791
Query: 727 EWCAVVKKLLHILLDGTVSLGE--HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLE 784
++CA+++ LL +L++ + E +LD+ L E+ LL+RAV++ S +V+LL+ ++
Sbjct: 792 DYCALIRTLLDMLVERNLVNDELNREALDM-LAEIQLLNRAVKRKSTKMVELLIHYLVNP 850
Query: 785 VSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGI 844
++ L S K F+F P++ GP G+TP+H+AA GS+D++D LT+DP +G+
Sbjct: 851 LT--LSSSRK---------FVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGL 899
Query: 845 EAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI----NKRP--NGGHVVVDICGVVPDS 898
+W RD++G TP YA +R +++Y LV +K+ NK+ N H VVD G+
Sbjct: 900 SSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKRL 959
Query: 899 NIYQKQNNESTAS 911
++ +++ S AS
Sbjct: 960 SLEMNKSSSSCAS 972
|
|
| TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 4.1e-78, Sum P(3) = 4.1e-78
Identities = 117/356 (32%), Positives = 192/356 (53%)
Query: 433 RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEE 492
RT +I FKLF K+P+ P LR +I WLS PSDMES+IRPGCVIL++Y+ + +AWE+
Sbjct: 469 RTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESFIRPGCVILSVYVAMSASAWEQ 528
Query: 493 LCCDLTFXXXXXXXXXXXXFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILS 552
L + FW++ Q+A +G++ L S R+ N ++++
Sbjct: 529 L--EENLLQRVRSLVQDSEFWSNSRFLVNAGRQLASHKHGRIRLSKSW--RTLNLPELIT 584
Query: 553 VKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQC 612
V P+AV A E V+G NL RL CA G Y E T ++DEL
Sbjct: 585 VSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNYASMEVTGR----EHRLTKVDELNV 640
Query: 613 VNFSC-SIPAVT-GRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVE 670
+F S +V+ GR FIE+E+ G FP I+A +C E+ LE EF+ D E
Sbjct: 641 SSFQVQSASSVSLGRCFIELEN-GLRGDNFPLIIANATICKELNRLEE--EFHPKDVIEE 697
Query: 671 RFGKID---TKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHE 727
+ +D ++ + + F++E+GWLF R + H +P+ F L RFK+L+ S++ +
Sbjct: 698 QIQNLDRPRSREEVLCFLNELGWLFQRKWTSDI--HGEPD---FSLPRFKFLLVCSVERD 752
Query: 728 WCAVVKKLLHILLD---GTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRF 780
+C++++ +L ++++ G L SLD+ L ++ LL+RA+++ + + + L+ +
Sbjct: 753 YCSLIRTVLDMMVERNLGKDGLLNKESLDM-LADIQLLNRAIKRRNTKMAETLIHY 807
|
|
| TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 7.1e-27, P = 7.1e-27
Identities = 56/81 (69%), Positives = 63/81 (77%)
Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
CQ E C ADLS+AK YHRRHKVCE HSKAS + + QRFCQQCSRFH+L EFD GKRS
Sbjct: 188 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRS 247
Query: 210 CRRRLAGHNKRRRKTNPDAVA 230
CR+RLA HN+RRRK + A A
Sbjct: 248 CRKRLADHNRRRRKCHQSASA 268
|
|
| TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 9.1e-27, P = 9.1e-27
Identities = 54/79 (68%), Positives = 62/79 (78%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
VCQVE C AD+S AK YH+RHKVC+ H+KA + + QRFCQQCSRFH L EFDE KR
Sbjct: 53 VCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKR 112
Query: 209 SCRRRLAGHNKRRRKTNPD 227
SCRRRLAGHN+RRRK+ D
Sbjct: 113 SCRRRLAGHNERRRKSTTD 131
|
|
| TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
+CQV+ C +L+ AK Y+RRH+VCE+H+KAS A V V QRFCQQCSRFH L EFDE KR
Sbjct: 62 LCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKR 121
Query: 209 SCRRRLAGHNKRRRKTNPDAVANGS 233
SCRRRLAGHN+RRRK + D+ GS
Sbjct: 122 SCRRRLAGHNERRRKISGDSFGEGS 146
|
|
| TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 3.1e-26, P = 3.1e-26
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
+CQV+ C AD+ AK YHRRHKVCE+H+KAS + + QRFCQQCSRFH LQEFDE KR
Sbjct: 53 LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 112
Query: 209 SCRRRLAGHNKRRRKTNPDAV-ANGS 233
SCRRRLAGHN+RRRK++ ++ GS
Sbjct: 113 SCRRRLAGHNERRRKSSGESTYGEGS 138
|
|
| TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
CQVE CG DL+NAK Y+ RH+VC +HSK + V + QRFCQQCSRFH L EFD KRS
Sbjct: 74 CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRS 133
Query: 210 CRRRLAGHNKRRRKTNPDAVA 230
CRRRLAGHN+RRRK P +++
Sbjct: 134 CRRRLAGHNERRRKPQPASLS 154
|
|
| TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.1e-26, P = 5.1e-26
Identities = 53/75 (70%), Positives = 62/75 (82%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
+CQV C DLS++KDYH+RH+VCE HSK S +V + QRFCQQCSRFH L EFD+GKR
Sbjct: 123 LCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKR 182
Query: 209 SCRRRLAGHNKRRRK 223
SCRRRLAGHN+RRRK
Sbjct: 183 SCRRRLAGHNERRRK 197
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q75LH6 | SPL6_ORYSJ | No assigned EC number | 0.4371 | 0.9554 | 0.9742 | yes | no |
| Q9S7P5 | SPL12_ARATH | No assigned EC number | 0.5813 | 0.9180 | 0.9784 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 988 | |||
| pfam03110 | 79 | pfam03110, SBP, SBP domain | 5e-52 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 3e-05 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 0.004 |
| >gnl|CDD|190527 pfam03110, SBP, SBP domain | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 5e-52
Identities = 64/79 (81%), Positives = 68/79 (86%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
CQVE CGADLSNAKDYHRRHKVCE+HSKA LV + QRFCQQCSRFH+L EFDEGKR
Sbjct: 1 RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60
Query: 209 SCRRRLAGHNKRRRKTNPD 227
SCRRRLAGHN+RRRK PD
Sbjct: 61 SCRRRLAGHNERRRKPQPD 79
|
SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 34/124 (27%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 761 LLHRAVRKNSRPLVDLLLRF-VPLEVSDRLGSENKALVDGVHKG------FLFR----PD 809
LH A +V LLL + D G L G L +
Sbjct: 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGADVN 67
Query: 810 VIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYS 869
G TP+H+AA ++G+ DV+ L A NARD G TP A GH
Sbjct: 68 ARDKDGNTPLHLAA-RNGNLDVVKLLLKHG------ADVNARDKDGRTPLHLAAKNGHLE 120
Query: 870 YIHL 873
+ L
Sbjct: 121 VVKL 124
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 34/120 (28%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
LH A + + LV LLL E A V+ T +H+
Sbjct: 1 LHLAAKNGNLELVKLLL-------------EKGADVNLGDTD-------------TALHL 34
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH-LVQKKINK 880
AA G+ +++ L + A NA+D G+T A G+ + L++ +
Sbjct: 35 AARN-GNLEIVKLL------LEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87
|
Length = 91 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 988 | |||
| PF03110 | 79 | SBP: SBP domain; InterPro: IPR004333 The SBP plant | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 99.82 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.81 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.81 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.77 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.76 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 99.75 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.74 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.74 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.74 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.73 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.73 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.73 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.72 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.72 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.71 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.7 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.68 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.68 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.68 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.67 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.67 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.67 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.67 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.67 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.66 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.66 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.64 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.64 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.64 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.64 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.64 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.62 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.6 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.59 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.58 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.58 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.57 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.55 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.53 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.53 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.53 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.51 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.49 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.49 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.49 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.47 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.47 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.47 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.46 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.45 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.44 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.42 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.41 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.41 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.39 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.37 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.36 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.36 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.3 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.29 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.28 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.28 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.28 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.26 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.24 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.23 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.21 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.17 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.16 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.15 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.13 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.12 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.08 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.07 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.02 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 98.97 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 98.97 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 98.95 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 98.95 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 98.95 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 98.93 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 98.9 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 98.89 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 98.83 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.82 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 98.72 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 98.72 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 98.66 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.63 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 98.37 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.26 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.14 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.1 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.0 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 97.99 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 97.93 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 97.8 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 97.65 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.6 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 97.57 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 97.53 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 97.47 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 97.46 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 97.46 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 97.35 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.18 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 97.18 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 96.94 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 96.48 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 96.4 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 96.21 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 96.14 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 95.96 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 94.74 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 93.34 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 92.15 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 92.09 |
| >PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=263.17 Aligned_cols=78 Identities=65% Similarity=1.133 Sum_probs=63.2
Q ss_pred ceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCcccccccCccchHHHHHhhhhhhhccCCC
Q 001971 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 (988)
Q Consensus 149 ~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd~~krsCr~~L~~hn~rrr~~~~ 226 (988)
+||||||++||+.+|.||+||||||.|+||++|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999875
|
Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A. |
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=188.29 Aligned_cols=182 Identities=20% Similarity=0.158 Sum_probs=148.5
Q ss_pred HHHHHHHHhhhcC-cchhh-hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCc
Q 001971 652 EIRMLESALEFNR-TDADV-ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEW 728 (988)
Q Consensus 652 EI~~LE~~le~~a-~~~~~-~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~ 728 (988)
|..++|.+++..- +.-.- +.++|+++|-+| .+....+.+||..+.. ..+.-| .-..+|||.|+..|+
T Consensus 15 ~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv--~~ddkD--------daGWtPlhia~s~g~ 84 (226)
T KOG4412|consen 15 EEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNV--KPDDKD--------DAGWTPLHIAASNGN 84 (226)
T ss_pred hHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCC--CCCCcc--------ccCCchhhhhhhcCc
Confidence 5667777776544 22112 348999999999 6999999999874432 222111 135779999999999
Q ss_pred hHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCC
Q 001971 729 CAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRP 808 (988)
Q Consensus 729 ~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdp 808 (988)
.+||+.||+.- +++.+. .+..|.|+||||+.+|..+|+++||+. |+ .+
T Consensus 85 ~evVk~Ll~r~---~advna-----~tn~G~T~LHyAagK~r~eIaqlLle~-------ga-----------------~i 132 (226)
T KOG4412|consen 85 DEVVKELLNRS---GADVNA-----TTNGGQTCLHYAAGKGRLEIAQLLLEK-------GA-----------------LI 132 (226)
T ss_pred HHHHHHHhcCC---CCCcce-----ecCCCcceehhhhcCChhhHHHHHHhc-------CC-----------------CC
Confidence 99999999841 122211 355699999999999999999999999 88 89
Q ss_pred ccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 809 DVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 809 N~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++|..|.||||-||. -|..+|+++|+.. +|.+|..|..|+||||.|...||.++..+|.+++++..
T Consensus 133 ~~kD~~~qtplHRAAa-vGklkvie~Li~~------~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~ 199 (226)
T KOG4412|consen 133 RIKDKQGQTPLHRAAA-VGKLKVIEYLISQ------GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD 199 (226)
T ss_pred cccccccCchhHHHHh-ccchhhHHHHHhc------CCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence 9999999999999999 8999999999999 99999999999999999988899999999999998654
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=201.25 Aligned_cols=68 Identities=22% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCC-CCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSG-STPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G-~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
++|.+|..|.||||+|+. .|+.+++++|+++ ||+++..|..| .||+|+|+..|+.+++++|.+++++.
T Consensus 160 ~~~~~d~~g~TpL~~A~~-~g~~eiv~~Ll~~------ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 160 CLDIEDCCGCTPLIIAMA-KGDIAICKMLLDS------GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHhC------CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 455666666666666666 6666666666666 66666666555 35666666666666666666666554
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=193.99 Aligned_cols=189 Identities=15% Similarity=0.068 Sum_probs=148.9
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|++.|... ..+..++.+++.++.... .++.+++|.++ .+....+.+|+..+......+ ...
T Consensus 30 G~TpLh~Aa~~--g~~eiv~~Ll~~ga~~n~--~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d-----------~~G 94 (284)
T PHA02791 30 GHSALYYAIAD--NNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGMDDSQFD-----------DKG 94 (284)
T ss_pred CCcHHHHHHHc--CCHHHHHHHHHCcCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC-----------CCC
Confidence 47888888765 667777788888775432 24689999998 577888888887664222211 246
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCC-CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTE-LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G-~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
++|||+|+..++.++|+.|++..++.+ . .+..| .||||+||..|+.++|++||.+ |.
T Consensus 95 ~TpLh~Aa~~g~~eivk~Ll~~gadin--------~-~~~~g~~TpL~~Aa~~g~~eivk~LL~~-------~~------ 152 (284)
T PHA02791 95 NTALYYAVDSGNMQTVKLFVKKNWRLM--------F-YGKTGWKTSFYHAVMLNDVSIVSYFLSE-------IP------ 152 (284)
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCcC--------c-cCCCCCcHHHHHHHHcCCHHHHHHHHhc-------CC------
Confidence 889999999999999999998644311 1 12335 4899999999999999999988 22
Q ss_pred cccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCH-HHHHHHcCCHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTP-EDYARLRGHYSYIHL 873 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TP-Lh~A~~rGh~evveL 873 (988)
+..| ..|.||||+||. .|+.++|++|+++ ||++|.+|..|.|| ||+|+..|+.+++++
T Consensus 153 -------------~~~d~~~g~TpLh~Aa~-~g~~eiv~lLL~~------gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l 212 (284)
T PHA02791 153 -------------STFDLAILLSCIHITIK-NGHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDLEMLQA 212 (284)
T ss_pred -------------cccccccCccHHHHHHH-cCCHHHHHHHHHC------CCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence 2222 258999999999 9999999999999 99999999999987 999999999999999
Q ss_pred HHHhhhcCCC
Q 001971 874 VQKKINKRPN 883 (988)
Q Consensus 874 L~~k~ak~~~ 883 (988)
|.+++++...
T Consensus 213 Ll~~Ga~in~ 222 (284)
T PHA02791 213 LFKYDINIYS 222 (284)
T ss_pred HHHCCCCCcc
Confidence 9999987653
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=193.57 Aligned_cols=188 Identities=15% Similarity=0.129 Sum_probs=158.2
Q ss_pred cchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHH
Q 001971 645 AEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFS 723 (988)
Q Consensus 645 ad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~A 723 (988)
..+...++++.++.+++.|++.......|.+++|.++ .+.+..+.+|+..+...... .....++||+|
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-----------~~~~~t~L~~A 75 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-----------YPDIESELHDA 75 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-----------CCCcccHHHHH
Confidence 3466678999999999998876555567999999999 57888888888877421111 12346899999
Q ss_pred HHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccc
Q 001971 724 MDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKG 803 (988)
Q Consensus 724 ve~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~ 803 (988)
+..|+.++|+.|++...... . .....|.||||+|+..|+.++|++||++ |+
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~----~----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-------ga-------------- 126 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFAD----D----VFYKDGMTPLHLATILKKLDIMKLLIAR-------GA-------------- 126 (413)
T ss_pred HHCCCHHHHHHHHHcCCccc----c----cccCCCCCHHHHHHHhCCHHHHHHHHhC-------CC--------------
Confidence 99999999999998654211 0 0133588999999999999999999999 88
Q ss_pred cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 804 FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 804 y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++|..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 127 ---d~~~~~~~g~tpLh~A~~-~~~~~~v~~Ll~~------g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 127 ---DPDIPNTDKFSPLHLAVM-MGDIKGIELLIDH------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195 (413)
T ss_pred ---CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 889999999999999999 9999999999999 99999999999999999999999999999999988654
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-18 Score=192.60 Aligned_cols=194 Identities=18% Similarity=0.118 Sum_probs=162.5
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HH--HHHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MD--FIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~--fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+..|+++|.......+..++.+++.++.....+..|.+++|.++ .+ .+..+.+|++++......+ .
T Consensus 106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d-----------~ 174 (480)
T PHA03100 106 GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN-----------R 174 (480)
T ss_pred CCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccccc-----------C
Confidence 46788887733447788899999998877666678999999999 46 7888999998874322222 1
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCC------CcHHHHHHHcCC--HHHHHHHhccCCCccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTE------LGLLHRAVRKNS--RPLVDLLLRFVPLEVS 786 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G------~TpLH~AVr~g~--~eiVelLL~~~p~~~~ 786 (988)
...+|||+|+..++.++++.|++.+++.+. .+..+ .||||.|+..++ .++|++|+++
T Consensus 175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~---------~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~------ 239 (480)
T PHA03100 175 YGYTPLHIAVEKGNIDVIKFLLDNGADINA---------GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY------ 239 (480)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCccC---------CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc------
Confidence 457899999999999999999997654321 12223 699999999999 9999999999
Q ss_pred cccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC
Q 001971 787 DRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG 866 (988)
Q Consensus 787 ~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG 866 (988)
|+ ++|.+|..|.||||+|+. .|+.+++++|++. ||+++.+|..|.||||+|+..+
T Consensus 240 -g~-----------------din~~d~~g~TpL~~A~~-~~~~~iv~~Ll~~------gad~n~~d~~g~tpl~~A~~~~ 294 (480)
T PHA03100 240 -GV-----------------PINIKDVYGFTPLHYAVY-NNNPEFVKYLLDL------GANPNLVNKYGDTPLHIAILNN 294 (480)
T ss_pred -CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCccCCCCCcHHHHHHHhC
Confidence 77 889999999999999999 9999999999999 9999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCC
Q 001971 867 HYSYIHLVQKKINKRP 882 (988)
Q Consensus 867 h~evveLL~~k~ak~~ 882 (988)
+.+++++|.+++++..
T Consensus 295 ~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 295 NKEIFKLLLNNGPSIK 310 (480)
T ss_pred CHHHHHHHHhcCCCHH
Confidence 9999999999887543
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=176.87 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=114.1
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.++|||+|+..|+.+||.+||.. .++..++ ++..||||||.|+..|+.++|+-||... |+
T Consensus 38 ~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~dd-----kDdaGWtPlhia~s~g~~evVk~Ll~r~------~a------ 97 (226)
T KOG4412|consen 38 GRTPLHWACSFGHVEIVYFLLSQ---PNVKPDD-----KDDAGWTPLHIAASNGNDEVVKELLNRS------GA------ 97 (226)
T ss_pred CCceeeeeeecCchhHHHHHHhc---CCCCCCC-----ccccCCchhhhhhhcCcHHHHHHHhcCC------CC------
Confidence 58899999999999999999972 2333222 3556999999999999999999999883 56
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|+.+..|.||||+||. .|..+|+.+|+++ ||.++++|..|.||||-|+.-|+.+++++|+
T Consensus 98 -----------dvna~tn~G~T~LHyAag-K~r~eIaqlLle~------ga~i~~kD~~~qtplHRAAavGklkvie~Li 159 (226)
T KOG4412|consen 98 -----------DVNATTNGGQTCLHYAAG-KGRLEIAQLLLEK------GALIRIKDKQGQTPLHRAAAVGKLKVIEYLI 159 (226)
T ss_pred -----------CcceecCCCcceehhhhc-CChhhHHHHHHhc------CCCCcccccccCchhHHHHhccchhhHHHHH
Confidence 899999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred Hhhhc
Q 001971 876 KKINK 880 (988)
Q Consensus 876 ~k~ak 880 (988)
..++.
T Consensus 160 ~~~a~ 164 (226)
T KOG4412|consen 160 SQGAP 164 (226)
T ss_pred hcCCC
Confidence 98763
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=187.05 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHhhhcCcc-hhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHc
Q 001971 649 VCSEIRMLESALEFNRTD-ADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDH 726 (988)
Q Consensus 649 iCsEI~~LE~~le~~a~~-~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~ 726 (988)
.-+++..++.+++..... ...++.+.+++|.++ -+.+..+.||+.++......+ ....+||++|+..
T Consensus 10 ~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~-----------~~~~t~L~~A~~~ 78 (434)
T PHA02874 10 YSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN-----------TKIPHPLLTAIKI 78 (434)
T ss_pred hcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------CCCCCHHHHHHHc
Confidence 335667777777644432 222456789999999 588899999998774322211 2346899999999
Q ss_pred CchHHHHHHhhhhcccccc---------------CCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCc
Q 001971 727 EWCAVVKKLLHILLDGTVS---------------LGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 727 g~~aVVk~LL~~l~dg~vd---------------~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~ 791 (988)
++.++++.|++.+++.... .|.. ....+..|.||||+|++.|+.++|++|+++ |+
T Consensus 79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d-~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-------ga-- 148 (434)
T PHA02874 79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID-VNIKDAELKTFLHYAIKKGDLESIKMLFEY-------GA-- 148 (434)
T ss_pred CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCC-CCCCCCCCccHHHHHHHCCCHHHHHHHHhC-------CC--
Confidence 9999999999876543210 0111 111345688999999999999999999999 77
Q ss_pred cccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 792 ENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++
T Consensus 149 ---------------d~n~~d~~g~tpLh~A~~-~~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~~g~~~iv 206 (434)
T PHA02874 149 ---------------DVNIEDDNGCYPIHIAIK-HNFFDIIKLLLEK------GAYANVKDNNGESPLHNAAEYGDYACI 206 (434)
T ss_pred ---------------CCCCcCCCCCCHHHHHHH-CCcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999
Q ss_pred HHHHHhhhcC
Q 001971 872 HLVQKKINKR 881 (988)
Q Consensus 872 eLL~~k~ak~ 881 (988)
++|.+++++.
T Consensus 207 ~~Ll~~g~~i 216 (434)
T PHA02874 207 KLLIDHGNHI 216 (434)
T ss_pred HHHHhCCCCC
Confidence 9999998754
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-18 Score=195.87 Aligned_cols=183 Identities=21% Similarity=0.181 Sum_probs=156.3
Q ss_pred hhhhhHHHHHHHHhhh-cCcchhhhhcCCcccHHHHH-HHHHHHhHhhcccccccccC-CCCCCCCCccccccchHHHHH
Q 001971 647 EDVCSEIRMLESALEF-NRTDADVERFGKIDTKNQAM-DFIHEIGWLFHRSQSKSRLG-HLDPNTDLFPLRRFKWLIEFS 723 (988)
Q Consensus 647 ~~iCsEI~~LE~~le~-~a~~~~~~~~g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~-~~d~~~~l~qi~R~k~lL~~A 723 (988)
+..=+||++++.+++. +....+.+..|-+.+|=+|+ +-|..+.+|+.++......+ .. ..+|||+|
T Consensus 51 A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l-----------~stPLHWA 119 (600)
T KOG0509|consen 51 ATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVL-----------GSTPLHWA 119 (600)
T ss_pred HhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCC-----------CCCcchHH
Confidence 4444999999999998 77776666788999999997 77888899999997655444 22 26799999
Q ss_pred HHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccc
Q 001971 724 MDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKG 803 (988)
Q Consensus 724 ve~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~ 803 (988)
+.+|+..+|..||+++++.+. .+..|.+|||.||+.++..+|-+||.. |+
T Consensus 120 ar~G~~~vv~lLlqhGAdpt~---------~D~~G~~~lHla~~~~~~~~vayll~~-------~~-------------- 169 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADPTL---------KDKQGLTPLHLAAQFGHTALVAYLLSK-------GA-------------- 169 (600)
T ss_pred HHcCcHHHHHHHHHcCCCCce---------ecCCCCcHHHHHHHhCchHHHHHHHHh-------cc--------------
Confidence 999999999999997665332 466799999999999999999999998 76
Q ss_pred cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 804 FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 804 y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
++|.+|.+|+||||.||. .|+...+..||.. ++.++.+| ..|.||||+|+.+||..++.+|++-+++
T Consensus 170 ---d~d~~D~~grTpLmwAay-kg~~~~v~~LL~f------~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~ 237 (600)
T KOG0509|consen 170 ---DIDLRDNNGRTPLMWAAY-KGFALFVRRLLKF------GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD 237 (600)
T ss_pred ---cCCCcCCCCCCHHHHHHH-hcccHHHHHHHHh------cccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence 899999999999999999 8888879999998 99999998 8999999999999999999966665443
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=192.58 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=152.8
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH-HHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
.+.|++.|. .++.+..++.+++.|+.....+..|.+++|.+|. +....+.++++....... .-.
T Consensus 37 ~~tPLh~A~--~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-------------~~~ 101 (477)
T PHA02878 37 PFIPLHQAV--EARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV-------------FYT 101 (477)
T ss_pred CcchHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc-------------ccc
Confidence 366777654 4588889999999988766556789999999994 677777777765421100 112
Q ss_pred chHHHHHHHcCchHHHHHHhhhhcccccc-------------------------CCCCCchhhccC-CCcHHHHHHHcCC
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVS-------------------------LGEHPSLDLALT-ELGLLHRAVRKNS 770 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd-------------------------~g~~~~l~~~l~-G~TpLH~AVr~g~ 770 (988)
.++|+.|+..++.++++.|+....+.... .|.... ..+.. |.||||+|+..|+
T Consensus 102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~~~~~~g~tpLh~A~~~~~ 180 (477)
T PHA02878 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADIN-MKDRHKGNTALHYATENKD 180 (477)
T ss_pred hhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCC-ccCCCCCCCHHHHHHhCCC
Confidence 46889999999999888888652221100 111111 12334 8999999999999
Q ss_pred HHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCcccccccc
Q 001971 771 RPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNA 850 (988)
Q Consensus 771 ~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvna 850 (988)
.++|++||++ |+ ++|..|..|.||||+|+. .|+.+++++|+++ |++++.
T Consensus 181 ~~iv~~Ll~~-------ga-----------------d~n~~d~~g~tpLh~A~~-~~~~~iv~~Ll~~------ga~in~ 229 (477)
T PHA02878 181 QRLTELLLSY-------GA-----------------NVNIPDKTNNSPLHHAVK-HYNKPIVHILLEN------GASTDA 229 (477)
T ss_pred HHHHHHHHHC-------CC-----------------CCCCcCCCCCCHHHHHHH-hCCHHHHHHHHHc------CCCCCC
Confidence 9999999999 77 889999999999999999 8999999999999 999999
Q ss_pred CCCCCCCHHHHHHHc-CCHHHHHHHHHhhhcCC
Q 001971 851 RDSSGSTPEDYARLR-GHYSYIHLVQKKINKRP 882 (988)
Q Consensus 851 rD~~G~TPLh~A~~r-Gh~evveLL~~k~ak~~ 882 (988)
+|..|.||||+|+.+ ++.+++++|.+++++..
T Consensus 230 ~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn 262 (477)
T PHA02878 230 RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262 (477)
T ss_pred CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 999999999999976 78999999999987654
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=186.10 Aligned_cols=207 Identities=19% Similarity=0.134 Sum_probs=140.4
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCC-----------CC
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHL-----------DP 706 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~-----------d~ 706 (988)
..|++.|... +.+..++.+++.|+.....+..+.+++|.++ .+.+.-+.||++++......... +.
T Consensus 36 ~tpL~~A~~~--g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~ 113 (434)
T PHA02874 36 TTPLIDAIRS--GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC 113 (434)
T ss_pred CCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence 5788876654 7888889999999876655667889999988 58888888888776421110000 00
Q ss_pred CCC-CccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcc
Q 001971 707 NTD-LFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV 785 (988)
Q Consensus 707 ~~~-l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~ 785 (988)
..+ ...-....++||+|+..|+.++|+.|++..++.+ ..+..|.||||+|++.|+.+++++|+++
T Consensus 114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n---------~~d~~g~tpLh~A~~~~~~~iv~~Ll~~----- 179 (434)
T PHA02874 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN---------IEDDNGCYPIHIAIKHNFFDIIKLLLEK----- 179 (434)
T ss_pred cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC---------CcCCCCCCHHHHHHHCCcHHHHHHHHHC-----
Confidence 000 0122346789999999999999999998654321 1244588999999999999999999998
Q ss_pred ccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCC------c----------------
Q 001971 786 SDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMV------G---------------- 843 (988)
Q Consensus 786 ~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~v------g---------------- 843 (988)
|+ ++|..+..|.||||+|+. .|+.++|++|+++...+ |
T Consensus 180 --g~-----------------~~n~~~~~g~tpL~~A~~-~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~ 239 (434)
T PHA02874 180 --GA-----------------YANVKDNNGESPLHNAAE-YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE 239 (434)
T ss_pred --CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHH
Confidence 55 455555666666666666 56666666666551100 0
Q ss_pred ---cccccccCCCCCCCHHHHHHHcC-CHHHHHHHHHhhhcC
Q 001971 844 ---IEAWKNARDSSGSTPEDYARLRG-HYSYIHLVQKKINKR 881 (988)
Q Consensus 844 ---~gAdvnarD~~G~TPLh~A~~rG-h~evveLL~~k~ak~ 881 (988)
.+++++.+|..|.||||+|+..+ +.+++++|..++++.
T Consensus 240 ~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~ 281 (434)
T PHA02874 240 LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI 281 (434)
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC
Confidence 03556667777777777777764 677788777776653
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=187.39 Aligned_cols=193 Identities=16% Similarity=0.114 Sum_probs=153.5
Q ss_pred Ccceeecc---hhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH--H-HHHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 639 FFPFIVAE---EDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA--M-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 639 ffP~LVad---~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a--m-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
..|+.++. +.....+..++.+++.++.....+..|.+++|.++ . +.+..+.+|++++......
T Consensus 69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~----------- 137 (480)
T PHA03100 69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK----------- 137 (480)
T ss_pred cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCcc-----------
Confidence 55666511 33446777788888888876555667888999888 4 6777777887776422111
Q ss_pred ccccchHHHHHHHcC--chHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccC
Q 001971 713 LRRFKWLIEFSMDHE--WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLG 790 (988)
Q Consensus 713 i~R~k~lL~~Ave~g--~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~ 790 (988)
-....++||+|+..+ +.++++.|++.+++.+. .+..|.||||+|++.|+.++|++|+++ |+
T Consensus 138 ~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~---------~d~~g~tpL~~A~~~~~~~iv~~Ll~~-------ga- 200 (480)
T PHA03100 138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINA---------KNRYGYTPLHIAVEKGNIDVIKFLLDN-------GA- 200 (480)
T ss_pred CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc---------ccCCCCCHHHHHHHhCCHHHHHHHHHc-------CC-
Confidence 123578999999999 89999999986543211 233588999999999999999999998 77
Q ss_pred ccccccccccccccccCCccCCCCC------ChHHHHHHhhCCC--HHHHHHhhcCCCCCccccccccCCCCCCCHHHHH
Q 001971 791 SENKALVDGVHKGFLFRPDVIGPAG------LTPIHIAAGKDGS--EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYA 862 (988)
Q Consensus 791 ~~~~~l~~~s~~~y~fdpN~~d~~G------~TPLHiAA~~~G~--~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A 862 (988)
+++..+..| .||||+|+. .|+ .++|++|+++ |+++|.+|..|.||||+|
T Consensus 201 ----------------~~~~~~~~~~~~~~~~t~l~~a~~-~~~~~~~iv~~Ll~~------g~din~~d~~g~TpL~~A 257 (480)
T PHA03100 201 ----------------DINAGDIETLLFTIFETPLHIAAC-YNEITLEVVNYLLSY------GVPINIKDVYGFTPLHYA 257 (480)
T ss_pred ----------------CccCCCCCCCcHHHHHhHHHHHHH-hCcCcHHHHHHHHHc------CCCCCCCCCCCCCHHHHH
Confidence 788888888 999999999 899 9999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhhcCC
Q 001971 863 RLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 863 ~~rGh~evveLL~~k~ak~~ 882 (988)
+..|+.+++++|.+++++..
T Consensus 258 ~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 258 VYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred HHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999988543
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=177.08 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=129.1
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+..|.+++|.++ -+.+..+..|++.+...... ..++|||+|+..|+.++|+.|+...++.+
T Consensus 27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~-------------d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn----- 88 (284)
T PHA02791 27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLL-------------ENEFPLHQAATLEDTKIVKILLFSGMDDS----- 88 (284)
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC-------------CCCCHHHHHHHCCCHHHHHHHHHCCCCCC-----
Confidence 457899999999 47777788888876421111 13689999999999999999998544321
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCC-hHHHHHHhhCC
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGL-TPIHIAAGKDG 827 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~-TPLHiAA~~~G 827 (988)
..+..|.||||+|+..|+.++|++|+++ |+ ++|..+..|+ ||||+||. .|
T Consensus 89 ----~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-------ga-----------------din~~~~~g~~TpL~~Aa~-~g 139 (284)
T PHA02791 89 ----QFDDKGNTALYYAVDSGNMQTVKLFVKK-------NW-----------------RLMFYGKTGWKTSFYHAVM-LN 139 (284)
T ss_pred ----CCCCCCCCHHHHHHHcCCHHHHHHHHHC-------CC-----------------CcCccCCCCCcHHHHHHHH-cC
Confidence 1345689999999999999999999999 77 7788888885 99999999 99
Q ss_pred CHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 828 SEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 828 ~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+.++|++|+++ +++. .| ..|.||||+|+.+||.+++++|++++++..
T Consensus 140 ~~eivk~LL~~------~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n 187 (284)
T PHA02791 140 DVSIVSYFLSE------IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 187 (284)
T ss_pred CHHHHHHHHhc------CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999998 4432 34 358999999999999999999999988754
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=168.75 Aligned_cols=171 Identities=10% Similarity=-0.032 Sum_probs=134.1
Q ss_pred hhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcC--chHHHHHHh
Q 001971 660 LEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHE--WCAVVKKLL 736 (988)
Q Consensus 660 le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g--~~aVVk~LL 736 (988)
.+|-.+.+...++.-+++|.++ .+.+..+..|+.... ..+ ....+|||+|+..+ +.++++.||
T Consensus 8 ~~~~~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~n---~~~-----------~~g~TpLh~a~~~~~~~~eiv~~Ll 73 (209)
T PHA02859 8 YDYNDFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKFVN---DCN-----------DLYETPIFSCLEKDKVNVEILKFLI 73 (209)
T ss_pred cccchhHHHHhhccCcHHHHHHHhCcHHHHHHHHHhhh---ccC-----------ccCCCHHHHHHHcCCCCHHHHHHHH
Confidence 4444444445667788899998 688888887775432 111 23578999999865 899999999
Q ss_pred hhhccccccCCCCCchhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCC
Q 001971 737 HILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGP 813 (988)
Q Consensus 737 ~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~ 813 (988)
+..++.+. . ....|.||||+|+.. ++.++|++||++ |+ ++|.+|.
T Consensus 74 ~~gadvn~----~----~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-------ga-----------------din~~d~ 121 (209)
T PHA02859 74 ENGADVNF----K----TRDNNLSALHHYLSFNKNVEPEILKILIDS-------GS-----------------SITEEDE 121 (209)
T ss_pred HCCCCCCc----c----CCCCCCCHHHHHHHhCccccHHHHHHHHHC-------CC-----------------CCCCcCC
Confidence 96543221 0 123588999998864 479999999999 88 8999999
Q ss_pred CCChHHHHHHh-hCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHH-HHHcCCHHHHHHHHHhhhcCC
Q 001971 814 AGLTPIHIAAG-KDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDY-ARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 814 ~G~TPLHiAA~-~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~-A~~rGh~evveLL~~k~ak~~ 882 (988)
.|.||||+|+. ..++.+++++|+++ |++++.+|..|.||||. |+..++.+++++|.+++++..
T Consensus 122 ~G~TpLh~a~~~~~~~~~iv~~Li~~------gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~ 186 (209)
T PHA02859 122 DGKNLLHMYMCNFNVRINVIKLLIDS------GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN 186 (209)
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHc------CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 99999999875 24789999999999 99999999999999995 677899999999999987644
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=184.50 Aligned_cols=193 Identities=17% Similarity=0.101 Sum_probs=152.7
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+..|+++|..........++.+++.+++....+..|.+++|..+. ..+..+.+|+.++...... -.
T Consensus 117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-----------d~ 185 (471)
T PHA03095 117 GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-----------DD 185 (471)
T ss_pred CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-----------CC
Confidence 467888877555566778888888888776667788999987763 2355566777666321111 12
Q ss_pred ccchHHHHHHHc--CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCH--HHHHHHhccCCCccccccC
Q 001971 715 RFKWLIEFSMDH--EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSR--PLVDLLLRFVPLEVSDRLG 790 (988)
Q Consensus 715 R~k~lL~~Ave~--g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~--eiVelLL~~~p~~~~~Ga~ 790 (988)
...++||+|+.. +...+++.|++..++.+ ..+..|.||||+|+..++. .++++|+.. |+
T Consensus 186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~---------~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-------g~- 248 (471)
T PHA03095 186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPA---------ATDMLGNTPLHSMATGSSCKRSLVLPLLIA-------GI- 248 (471)
T ss_pred CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc---------ccCCCCCCHHHHHHhcCCchHHHHHHHHHc-------CC-
Confidence 457899998864 78899999998654321 1355688999999999874 678888888 77
Q ss_pred ccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 791 SENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 791 ~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
++|.+|..|.||||+|+. .|+.+++++|++. ||+++.+|..|.||||+|+..||.++
T Consensus 249 ----------------din~~d~~g~TpLh~A~~-~~~~~~v~~LL~~------gad~n~~~~~g~tpl~~A~~~~~~~~ 305 (471)
T PHA03095 249 ----------------SINARNRYGQTPLHYAAV-FNNPRACRRLIAL------GADINAVSSDGNTPLSLMVRNNNGRA 305 (471)
T ss_pred ----------------CCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHhCCHHH
Confidence 899999999999999999 9999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 001971 871 IHLVQKKINKR 881 (988)
Q Consensus 871 veLL~~k~ak~ 881 (988)
+++|.++.++.
T Consensus 306 v~~LL~~~~~~ 316 (471)
T PHA03095 306 VRAALAKNPSA 316 (471)
T ss_pred HHHHHHhCCCH
Confidence 99999876543
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=185.85 Aligned_cols=196 Identities=11% Similarity=0.078 Sum_probs=121.7
Q ss_pred HHHHHHHhhhcCcchhhhhcCCcccHHHHHH----HHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCc
Q 001971 653 IRMLESALEFNRTDADVERFGKIDTKNQAMD----FIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEW 728 (988)
Q Consensus 653 I~~LE~~le~~a~~~~~~~~g~~~lh~~am~----fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~ 728 (988)
++.++-+++.|++....+..|.+++|.++.. .+..+.+|+.++......+ ....+|||+|+..++
T Consensus 89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d-----------~~g~tpL~~a~~~~~ 157 (489)
T PHA02798 89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD-----------KDGFTMLQVYLQSNH 157 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC-----------CCCCcHHHHHHHcCC
Confidence 5555556666655444445566666665542 3445555555553222222 123556666666655
Q ss_pred ---hHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcC----CHHHHHHHhccCCCccccccCccc------cc
Q 001971 729 ---CAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKN----SRPLVDLLLRFVPLEVSDRLGSEN------KA 795 (988)
Q Consensus 729 ---~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g----~~eiVelLL~~~p~~~~~Ga~~~~------~~ 795 (988)
.++++.|++.+++.+. ..+..+.||||.+++.+ +.+++++|+++ |+.... .+
T Consensus 158 ~~~~~vv~~Ll~~gadin~--------~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-------Ga~i~~~~~~~~~~ 222 (489)
T PHA02798 158 HIDIEIIKLLLEKGVDINT--------HNNKEKYDTLHCYFKYNIDRIDADILKLFVDN-------GFIINKENKSHKKK 222 (489)
T ss_pred cchHHHHHHHHHhCCCccc--------ccCcCCCcHHHHHHHhccccCCHHHHHHHHHC-------CCCcccCCccccch
Confidence 5666666654322110 01223556666665432 56666666666 332211 01
Q ss_pred cc-------cccccc------c---ccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHH
Q 001971 796 LV-------DGVHKG------F---LFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPE 859 (988)
Q Consensus 796 l~-------~~s~~~------y---~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPL 859 (988)
+. ...... + ..++|.+|..|.||||+||. .|+.+++++|++. ||++|++|..|.|||
T Consensus 223 ~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~-~~~~~~v~~LL~~------GAdin~~d~~G~TpL 295 (489)
T PHA02798 223 FMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS-HNNRKIFEYLLQL------GGDINIITELGNTCL 295 (489)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH-cCcHHHHHHHHHc------CCcccccCCCCCcHH
Confidence 00 000000 0 14789999999999999999 9999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhhhcC
Q 001971 860 DYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 860 h~A~~rGh~evveLL~~k~ak~ 881 (988)
|+|+..|+.++++.|.+++.+.
T Consensus 296 ~~A~~~~~~~iv~~lL~~~~~~ 317 (489)
T PHA02798 296 FTAFENESKFIFNSILNKKPNK 317 (489)
T ss_pred HHHHHcCcHHHHHHHHccCCCH
Confidence 9999999999999998876543
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=159.90 Aligned_cols=133 Identities=11% Similarity=0.105 Sum_probs=110.6
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCC----HHHHHHHhccCCCccccccCc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNS----RPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~----~eiVelLL~~~p~~~~~Ga~~ 791 (988)
.+++||+|+..|+.++|+.|+...... ..+... ...+..|.||||+|+..|+ .+++++|+.+ |+
T Consensus 21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~--~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-------ga-- 88 (169)
T PHA02741 21 GENFFHEAARCGCFDIIARFTPFIRGD--CHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-------GA-- 88 (169)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhccc--hhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-------CC--
Confidence 478999999999999999997643100 011111 1235568899999999999 5889999998 77
Q ss_pred cccccccccccccccCCccCCC-CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 792 ENKALVDGVHKGFLFRPDVIGP-AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
++|.++. .|.||||+|+. .++.+++++|+..+ +++++.+|..|.||||+|...|+.++
T Consensus 89 ---------------din~~~~~~g~TpLh~A~~-~~~~~iv~~Ll~~~-----g~~~~~~n~~g~tpL~~A~~~~~~~i 147 (169)
T PHA02741 89 ---------------DINAQEMLEGDTALHLAAH-RRDHDLAEWLCCQP-----GIDLHFCNADNKSPFELAIDNEDVAM 147 (169)
T ss_pred ---------------CCCCCCcCCCCCHHHHHHH-cCCHHHHHHHHhCC-----CCCCCcCCCCCCCHHHHHHHCCCHHH
Confidence 7888885 89999999999 99999999999742 89999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 001971 871 IHLVQKKINKR 881 (988)
Q Consensus 871 veLL~~k~ak~ 881 (988)
+++|+++.+..
T Consensus 148 v~~L~~~~~~~ 158 (169)
T PHA02741 148 MQILREIVATS 158 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=178.40 Aligned_cols=217 Identities=17% Similarity=0.032 Sum_probs=158.6
Q ss_pred CCcceeecchhh-hhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH-H-HHHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 638 TFFPFIVAEEDV-CSEIRMLESALEFNRTDADVERFGKIDTKNQAM-D-FIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 638 ~ffP~LVad~~i-CsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~-fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+..|++++.... -...+.++.+++.|+.....+..|.+++|.++. + ....+.+|++++......+ .
T Consensus 47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~-----------~ 115 (471)
T PHA03095 47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD-----------K 115 (471)
T ss_pred CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCC-----------C
Confidence 367887766443 236778888999998776666789999999994 5 4677778887774322222 2
Q ss_pred ccchHHHHHH--HcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcC--CHHHHHHHhccCCCccccccC
Q 001971 715 RFKWLIEFSM--DHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKN--SRPLVDLLLRFVPLEVSDRLG 790 (988)
Q Consensus 715 R~k~lL~~Av--e~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g--~~eiVelLL~~~p~~~~~Ga~ 790 (988)
..++|||+|+ ..++.++++.|++.+++.+ ..+..|.||||+|+..+ +.++|++|++++.+.... ..
T Consensus 116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~---------~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~ 185 (471)
T PHA03095 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVN---------ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DD 185 (471)
T ss_pred CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC---------ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CC
Confidence 3578999999 5568899999999654321 12445789999988866 678999999884332111 01
Q ss_pred ccccccccccc--cc----------cccCCccCCCCCChHHHHHHhhCCCH--HHHHHhhcCCCCCccccccccCCCCCC
Q 001971 791 SENKALVDGVH--KG----------FLFRPDVIGPAGLTPIHIAAGKDGSE--DVLDALTDDPGMVGIEAWKNARDSSGS 856 (988)
Q Consensus 791 ~~~~~l~~~s~--~~----------y~fdpN~~d~~G~TPLHiAA~~~G~~--eVV~lLL~~p~~vg~gAdvnarD~~G~ 856 (988)
.+.++++.... .. ...+|+.+|..|.||||+||. .|+. .++..|++. |+++|.+|..|.
T Consensus 186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~-~~~~~~~~v~~ll~~------g~din~~d~~g~ 258 (471)
T PHA03095 186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT-GSSCKRSLVLPLLIA------GISINARNRYGQ 258 (471)
T ss_pred CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh-cCCchHHHHHHHHHc------CCCCCCcCCCCC
Confidence 12234332211 11 125899999999999999999 7764 688899999 999999999999
Q ss_pred CHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 857 TPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 857 TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
||||+|+..|+.+++++|.+++++..
T Consensus 259 TpLh~A~~~~~~~~v~~LL~~gad~n 284 (471)
T PHA03095 259 TPLHYAAVFNNPRACRRLIALGADIN 284 (471)
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 99999999999999999999988753
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=181.04 Aligned_cols=195 Identities=12% Similarity=0.123 Sum_probs=116.3
Q ss_pred HHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcC--ch
Q 001971 653 IRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHE--WC 729 (988)
Q Consensus 653 I~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g--~~ 729 (988)
.+.++.+++.|++....+..|.+++|.+| .+....+.+|+.++......+ ...++|||+|+..+ ..
T Consensus 52 ~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d-----------~~g~TpLh~A~~~~~~~~ 120 (446)
T PHA02946 52 ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD-----------KQHKTPLYYLSGTDDEVI 120 (446)
T ss_pred HHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC-----------CCCCCHHHHHHHcCCchH
Confidence 34555666666655444556677777776 466666666666653222222 12356777766544 35
Q ss_pred HHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc------cccccccc--c
Q 001971 730 AVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE------NKALVDGV--H 801 (988)
Q Consensus 730 aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~------~~~l~~~s--~ 801 (988)
++++.|++.+++.+. ..+..|.|||| |+..++.+++++|++. |++.. ..|++... .
T Consensus 121 e~v~lLl~~Gadin~--------~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-------gad~~~~d~~G~t~Lh~A~~~~ 184 (446)
T PHA02946 121 ERINLLVQYGAKINN--------SVDEEGCGPLL-ACTDPSERVFKKIMSI-------GFEARIVDKFGKNHIHRHLMSD 184 (446)
T ss_pred HHHHHHHHcCCCccc--------ccCCCCCcHHH-HHHCCChHHHHHHHhc-------cccccccCCCCCCHHHHHHHhc
Confidence 666666665432211 01223445554 3344555555555554 22111 11221110 0
Q ss_pred cc----------cccCCccCCCCCChHHHHHHhhCC--CHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCC-H
Q 001971 802 KG----------FLFRPDVIGPAGLTPIHIAAGKDG--SEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH-Y 868 (988)
Q Consensus 802 ~~----------y~fdpN~~d~~G~TPLHiAA~~~G--~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh-~ 868 (988)
.. ...++|.+|..|.||||+||. .| +.+++++|+ . ++++|++|..|.||||+|+..++ .
T Consensus 185 ~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~-~~~~~~~iv~lLl-~------gadin~~d~~G~TpLh~A~~~~~~~ 256 (446)
T PHA02946 185 NPKASTISWMMKLGISPSKPDHDGNTPLHIVCS-KTVKNVDIINLLL-P------STDVNKQNKFGDSPLTLLIKTLSPA 256 (446)
T ss_pred CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-cCCCcHHHHHHHH-c------CCCCCCCCCCCCCHHHHHHHhCChH
Confidence 00 112788888999999999998 55 778888887 4 68899999999999999998887 4
Q ss_pred HHHHHHHHhhhcCC
Q 001971 869 SYIHLVQKKINKRP 882 (988)
Q Consensus 869 evveLL~~k~ak~~ 882 (988)
+++++|+.+++...
T Consensus 257 ~~~~~Ll~~g~~~~ 270 (446)
T PHA02946 257 HLINKLLSTSNVIT 270 (446)
T ss_pred HHHHHHHhCCCCCC
Confidence 78888888876543
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=179.93 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=116.0
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+.+|+++|... +....++.+++.|+.....+..|.+++|.++. +.+..+..|++++...... .-.
T Consensus 72 G~TpLh~Aa~~--g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~----------~d~ 139 (446)
T PHA02946 72 GNYPLHIASKI--NNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS----------VDE 139 (446)
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc----------cCC
Confidence 46788877655 34455677777777655556677888887652 1244455666655321110 011
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhcccccc---------------------------CCCCCchhhccCCCcHHHHHHH
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVS---------------------------LGEHPSLDLALTELGLLHRAVR 767 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd---------------------------~g~~~~l~~~l~G~TpLH~AVr 767 (988)
...+||+ |+..++.++++.|++..++.+.. .|... ...+..|.||||+|+.
T Consensus 140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~ 217 (446)
T PHA02946 140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCS 217 (446)
T ss_pred CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence 2344554 44445556666665543321100 00000 0123345555555555
Q ss_pred cC--CHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC-HHHHHHhhcCCCCCcc
Q 001971 768 KN--SRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS-EDVLDALTDDPGMVGI 844 (988)
Q Consensus 768 ~g--~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~-~eVV~lLL~~p~~vg~ 844 (988)
++ +.+++++|+. |+ ++|.+|..|.||||+|+. .++ .+++++|+++
T Consensus 218 ~~~~~~~iv~lLl~--------ga-----------------din~~d~~G~TpLh~A~~-~~~~~~~~~~Ll~~------ 265 (446)
T PHA02946 218 KTVKNVDIINLLLP--------ST-----------------DVNKQNKFGDSPLTLLIK-TLSPAHLINKLLST------ 265 (446)
T ss_pred cCCCcHHHHHHHHc--------CC-----------------CCCCCCCCCCCHHHHHHH-hCChHHHHHHHHhC------
Confidence 43 4555555552 22 789999999999999999 666 6899999998
Q ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 845 EAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 845 gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
++.++ +.| +++|+..++.+++++|..++.+
T Consensus 266 g~~~~-----~~~-~~~a~~~~~~~~~e~l~~~g~~ 295 (446)
T PHA02946 266 SNVIT-----DQT-VNICIFYDRDDVLEIINDKGKQ 295 (446)
T ss_pred CCCCC-----CcH-HHHHHHcCchHHHHHHHHcCcc
Confidence 76543 444 9999999999999999988754
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=187.89 Aligned_cols=228 Identities=18% Similarity=0.119 Sum_probs=161.1
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhh-cccccccccCCCCCCCCCcccc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLF-HRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLL-qr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+.++|+++|+-.--.|.+ ..+++.++...-.+..+-+++|+++ .+-..-+...+ +++...... . -+-..
T Consensus 153 ~~~TpLh~A~~~~~~E~~--k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~--i-----n~~~n 223 (929)
T KOG0510|consen 153 NGFTPLHLAARKNKVEAK--KELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH--I-----NFDNN 223 (929)
T ss_pred CCCchhhHHHhcChHHHH--HHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc--c-----ccccC
Confidence 458999999865455532 3356667765544456777888877 23222222222 344221111 1 13344
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhcccc-ccCCCC-----CchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGT-VSLGEH-----PSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDR 788 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~-vd~g~~-----~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~G 788 (988)
..++|||.|++.|+.+.++.+|+.++.+. +..+.. ...+.+.+|-||||+|+++|+.++|+.||..+.+..++.
T Consensus 224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn 303 (929)
T KOG0510|consen 224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN 303 (929)
T ss_pred CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence 56889999999999999999999776443 211110 011235668899999999999999999999954443333
Q ss_pred cCccccccccccccc------------cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccc---cCCC
Q 001971 789 LGSENKALVDGVHKG------------FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKN---ARDS 853 (988)
Q Consensus 789 a~~~~~~l~~~s~~~------------y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvn---arD~ 853 (988)
. .+..|++-++.-+ =.+..|..|-.|+||||+||. +||..|+++|++. ||..+ ..|.
T Consensus 304 ~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~-~gH~~v~qlLl~~------GA~~~~~~e~D~ 375 (929)
T KOG0510|consen 304 K-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK-SGHDRVVQLLLNK------GALFLNMSEADS 375 (929)
T ss_pred C-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh-cCHHHHHHHHHhc------Chhhhccccccc
Confidence 2 2335665543332 124567889999999999998 9999999999999 99887 5699
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 854 SGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 854 ~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+|.||||.|+++||.+.|++|...+++.
T Consensus 376 dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 376 DGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred CCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 9999999999999999999999999976
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=179.28 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=146.8
Q ss_pred HHHHHHHHhhhcCcchhhhhcCCcccHHHHH----HHHHHHhHhhcccccc-cccCCCCCCCCCccccccchHHHHHHHc
Q 001971 652 EIRMLESALEFNRTDADVERFGKIDTKNQAM----DFIHEIGWLFHRSQSK-SRLGHLDPNTDLFPLRRFKWLIEFSMDH 726 (988)
Q Consensus 652 EI~~LE~~le~~a~~~~~~~~g~~~lh~~am----~fL~EIGWLLqr~~~~-~~~~~~d~~~~l~qi~R~k~lL~~Ave~ 726 (988)
..+.++.+++.|++....+..|.+++|.++. +.+..+.+|++++... ...+ ....+|||+|+..
T Consensus 87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-----------~~g~tpLh~a~~~ 155 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN-----------SRGYNLLHMYLES 155 (494)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-----------CCCCCHHHHHHHh
Confidence 4567888999999876666778999997653 3566778888877432 1221 2458899999765
Q ss_pred --CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcC----CHHHHHHHhccCCCccccccCccc------c
Q 001971 727 --EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKN----SRPLVDLLLRFVPLEVSDRLGSEN------K 794 (988)
Q Consensus 727 --g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g----~~eiVelLL~~~p~~~~~Ga~~~~------~ 794 (988)
++.++|+.||+.+++.+. ..+..|+||||.|++.+ +.++|++||+. |++.+. .
T Consensus 156 ~~~~~~iv~~Ll~~Gadi~~--------~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-------Ga~vn~~~~~~~t 220 (494)
T PHA02989 156 FSVKKDVIKILLSFGVNLFE--------KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-------GVNIETNNNGSES 220 (494)
T ss_pred ccCCHHHHHHHHHcCCCccc--------cccccCCChHHHHHhcccccccHHHHHHHHhC-------CCCccccCCcccc
Confidence 588999999996553221 12456889999998765 89999999999 443222 1
Q ss_pred ccccccccc---------------cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHH
Q 001971 795 ALVDGVHKG---------------FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPE 859 (988)
Q Consensus 795 ~l~~~s~~~---------------y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPL 859 (988)
+++...... ...++|.+|..|+||||+||. .|+.++|++|++. ||++|++|..|.|||
T Consensus 221 ~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~-~~~~~~v~~LL~~------Gadin~~d~~G~TpL 293 (494)
T PHA02989 221 VLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAK-VDNYEAFNYLLKL------GDDIYNVSKDGDTVL 293 (494)
T ss_pred HHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHH-hcCHHHHHHHHHc------CCCccccCCCCCCHH
Confidence 221100000 014789999999999999999 9999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhh
Q 001971 860 DYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 860 h~A~~rGh~evveLL~~k~ 878 (988)
|+|+..|+.+++++|.+..
T Consensus 294 ~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 294 TYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred HHHHHcCCHHHHHHHHhcC
Confidence 9999999999999888754
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=186.67 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=110.7
Q ss_pred CCcceeecchhhhhHH-HHHHHHhhhcCcchhhhhcCCcccHHHHH-HH-HHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 638 TFFPFIVAEEDVCSEI-RMLESALEFNRTDADVERFGKIDTKNQAM-DF-IHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI-~~LE~~le~~a~~~~~~~~g~~~lh~~am-~f-L~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
+..|++.|... ..+ ..++.+++.++.....+..|.+++|.++. ++ ...+..|+..+......+ .
T Consensus 273 g~TpLh~Aa~~--~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d-----------~ 339 (682)
T PHA02876 273 KNTPLHHASQA--PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAAD-----------R 339 (682)
T ss_pred CCCHHHHHHhC--CCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcc-----------c
Confidence 36777776643 222 23455566666555445678888888883 42 444555555553222211 2
Q ss_pred ccchHHHHHHHc-CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc
Q 001971 715 RFKWLIEFSMDH-EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 715 R~k~lL~~Ave~-g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
...++||+|+.. ++.++++.|++..++.+. .+..|.||||+|+.+|+.++|++||++ |+
T Consensus 340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadin~---------~d~~G~TpLh~Aa~~~~~~iv~~Ll~~-------ga---- 399 (682)
T PHA02876 340 LYITPLHQASTLDRNKDIVITLLELGANVNA---------RDYCDKTPIHYAAVRNNVVIINTLLDY-------GA---- 399 (682)
T ss_pred CCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc---------CCCCCCCHHHHHHHcCCHHHHHHHHHC-------CC----
Confidence 346788888775 467788888775433211 244578888888888888888888888 55
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC-CHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG-HYSYIH 872 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG-h~evve 872 (988)
+++..+..|.||||+|++..+...++++|+++ |+++|.+|..|+||||+|+..| +.++++
T Consensus 400 -------------d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~------gadin~~d~~G~TpLh~Aa~~~~~~~iv~ 460 (682)
T PHA02876 400 -------------DIEALSQKIGTALHFALCGTNPYMSVKTLIDR------GANVNSKNKDLSTPLHYACKKNCKLDVIE 460 (682)
T ss_pred -------------CccccCCCCCchHHHHHHcCCHHHHHHHHHhC------CCCCCcCCCCCChHHHHHHHhCCcHHHHH
Confidence 44445555555555555422223445555555 5555555555555555555443 345555
Q ss_pred HHHHhhhc
Q 001971 873 LVQKKINK 880 (988)
Q Consensus 873 LL~~k~ak 880 (988)
+|.+++++
T Consensus 461 lLl~~Gad 468 (682)
T PHA02876 461 MLLDNGAD 468 (682)
T ss_pred HHHHCCCC
Confidence 55555443
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=161.19 Aligned_cols=177 Identities=14% Similarity=0.019 Sum_probs=134.2
Q ss_pred CCCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH-H--HHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 636 SSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM-D--FIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 636 ss~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~--fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
+..+.|++.|... ..+..++.+++... ..+..|.+++|.++. + .+..+.+|++++......+
T Consensus 19 ~~~~~pL~~A~~~--~~~~~vk~Li~~~n---~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~---------- 83 (209)
T PHA02859 19 YRYCNPLFYYVEK--DDIEGVKKWIKFVN---DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT---------- 83 (209)
T ss_pred hccCcHHHHHHHh--CcHHHHHHHHHhhh---ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC----------
Confidence 4557888887654 44445555555432 224568999999885 2 5777888888874322221
Q ss_pred ccccchHHHHHHHc---CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHH--cCCHHHHHHHhccCCCcccc
Q 001971 713 LRRFKWLIEFSMDH---EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVR--KNSRPLVDLLLRFVPLEVSD 787 (988)
Q Consensus 713 i~R~k~lL~~Ave~---g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr--~g~~eiVelLL~~~p~~~~~ 787 (988)
....++|||+|+.. ++.++++.|++..++.+ . .+..|.||||.|+. .++.+++++||++
T Consensus 84 ~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin----~-----~d~~G~TpLh~a~~~~~~~~~iv~~Li~~------- 147 (209)
T PHA02859 84 RDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT----E-----EDEDGKNLLHMYMCNFNVRINVIKLLIDS------- 147 (209)
T ss_pred CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC----C-----cCCCCCCHHHHHHHhccCCHHHHHHHHHc-------
Confidence 11357899998764 47999999998654322 1 34568999999987 4689999999999
Q ss_pred ccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC
Q 001971 788 RLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG 866 (988)
Q Consensus 788 Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG 866 (988)
|+ ++|.+|..|.||||.||...++.+++++|+++ |++++++|..|.||||+|..++
T Consensus 148 ga-----------------din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~------Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 148 GV-----------------SFLNKDFDNNNILYSYILFHSDKKIFDFLTSL------GIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred CC-----------------CcccccCCCCcHHHHHHHhcCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhhh
Confidence 87 89999999999999765438899999999999 9999999999999999999875
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=178.22 Aligned_cols=175 Identities=17% Similarity=0.079 Sum_probs=141.0
Q ss_pred HHHHHHHHhhhcCcchhhhhc-CCcccHHHHH-HHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCch
Q 001971 652 EIRMLESALEFNRTDADVERF-GKIDTKNQAM-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWC 729 (988)
Q Consensus 652 EI~~LE~~le~~a~~~~~~~~-g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~ 729 (988)
+...++.+++.|+.....+.. |.+++|.+|. +.+..+.+|+.++......+ ..+.+|||+|+..++.
T Consensus 146 ~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d-----------~~g~tpLh~A~~~~~~ 214 (477)
T PHA02878 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD-----------KTNNSPLHHAVKHYNK 214 (477)
T ss_pred HHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC-----------CCCCCHHHHHHHhCCH
Confidence 445778888888876655555 9999999994 77888888888774322222 2357899999999999
Q ss_pred HHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc-CCHHHHHHHhccCCCccccccCccccccccccccccccCC
Q 001971 730 AVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK-NSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRP 808 (988)
Q Consensus 730 aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~-g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdp 808 (988)
++++.||+.+++.+. .+..|.||||+|+.+ ++.++|++||++ |+ ++
T Consensus 215 ~iv~~Ll~~ga~in~---------~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-------ga-----------------dv 261 (477)
T PHA02878 215 PIVHILLENGASTDA---------RDKCGNTPLHISVGYCKDYDILKLLLEH-------GV-----------------DV 261 (477)
T ss_pred HHHHHHHHcCCCCCC---------CCCCCCCHHHHHHHhcCCHHHHHHHHHc-------CC-----------------CC
Confidence 999999996543221 345689999999976 789999999999 87 78
Q ss_pred ccCCC-CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC-CHHHHHHHHHhhh
Q 001971 809 DVIGP-AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG-HYSYIHLVQKKIN 879 (988)
Q Consensus 809 N~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG-h~evveLL~~k~a 879 (988)
|..+. .|.||||+|+ ++.+++++|+++ ||++|++|..|.||||+|+..+ +.+++++|..++.
T Consensus 262 n~~~~~~g~TpLh~A~---~~~~~v~~Ll~~------gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~ 325 (477)
T PHA02878 262 NAKSYILGLTALHSSI---KSERKLKLLLEY------GADINSLNSYKLTPLSSAVKQYLCINIGRILISNIC 325 (477)
T ss_pred CccCCCCCCCHHHHHc---cCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHH
Confidence 88875 7999999993 568999999999 9999999999999999999754 5678888877654
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=176.31 Aligned_cols=184 Identities=18% Similarity=0.142 Sum_probs=148.2
Q ss_pred CcceeecchhhhhHHHHHHHHhh-hcCcchhh--------hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCC
Q 001971 639 FFPFIVAEEDVCSEIRMLESALE-FNRTDADV--------ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNT 708 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le-~~a~~~~~--------~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~ 708 (988)
-+|++|+... +-.+..|.+++ .+++.++. .-.|.+++-.++ -++|..+.-|+.++.......+.
T Consensus 43 ~tPL~iaaRn--GH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T---- 116 (615)
T KOG0508|consen 43 GTPLLIAARN--GHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT---- 116 (615)
T ss_pred CCceeeehhc--CcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc----
Confidence 4899999976 44445577776 44443321 224667766666 69999999999998654433322
Q ss_pred CCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccc
Q 001971 709 DLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDR 788 (988)
Q Consensus 709 ~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~G 788 (988)
-.+||--||--|+.+|||+|++..++..+ .+..|.|.||+|+.+||.+|+++||+. |
T Consensus 117 -------NStPLraACfDG~leivKyLvE~gad~~I---------anrhGhTcLmIa~ykGh~~I~qyLle~-------g 173 (615)
T KOG0508|consen 117 -------NSTPLRAACFDGHLEIVKYLVEHGADPEI---------ANRHGHTCLMIACYKGHVDIAQYLLEQ-------G 173 (615)
T ss_pred -------CCccHHHHHhcchhHHHHHHHHcCCCCcc---------cccCCCeeEEeeeccCchHHHHHHHHh-------C
Confidence 24799999999999999999997665433 245588999999999999999999999 8
Q ss_pred cCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCH
Q 001971 789 LGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHY 868 (988)
Q Consensus 789 a~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ 868 (988)
+ ++|.++..|.|+||.+|. .|+.|||++|+.+ |+-+. +|..|.|||-.|+..||.
T Consensus 174 A-----------------Dvn~ks~kGNTALH~caE-sG~vdivq~Ll~~------ga~i~-~d~~GmtPL~~Aa~tG~~ 228 (615)
T KOG0508|consen 174 A-----------------DVNAKSYKGNTALHDCAE-SGSVDIVQLLLKH------GAKID-VDGHGMTPLLLAAVTGHT 228 (615)
T ss_pred C-----------------CcchhcccCchHHHhhhh-cccHHHHHHHHhC------Cceee-ecCCCCchHHHHhhhcch
Confidence 8 899999999999999999 9999999999999 77665 477799999999999999
Q ss_pred HHHHHHHH
Q 001971 869 SYIHLVQK 876 (988)
Q Consensus 869 evveLL~~ 876 (988)
++++.|..
T Consensus 229 ~iVe~L~~ 236 (615)
T KOG0508|consen 229 DIVERLLQ 236 (615)
T ss_pred HHHHHHhc
Confidence 99998883
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=155.36 Aligned_cols=130 Identities=11% Similarity=-0.031 Sum_probs=107.3
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHH---HHHHHhccCCCccccccCccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRP---LVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~e---iVelLL~~~p~~~~~Ga~~~~ 793 (988)
++.||.|+..+....++.+++.+.+...... ..+..|+||||+|+..|+.+ +|++|++. |+
T Consensus 21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-----~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-------Ga---- 84 (166)
T PHA02743 21 QNTFLRICRTGNIYELMEVAPFISGDGHLLH-----RYDHHGRQCTHMVAWYDRANAVMKIELLVNM-------GA---- 84 (166)
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-----ccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-------CC----
Confidence 5689999999998665555544332221111 13456899999999998865 48999999 77
Q ss_pred cccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhc-CCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTD-DPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~-~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
++|.++ ..|.||||+|+. .|+.+++++|++ . +++++.+|..|.||||+|+..++.+++
T Consensus 85 -------------din~~d~~~g~TpLh~A~~-~g~~~iv~~Ll~~~------gad~~~~d~~g~tpL~~A~~~~~~~iv 144 (166)
T PHA02743 85 -------------DINARELGTGNTLLHIAAS-TKNYELAEWLCRQL------GVNLGAINYQHETAYHIAYKMRDRRMM 144 (166)
T ss_pred -------------CCCCCCCCCCCcHHHHHHH-hCCHHHHHHHHhcc------CCCccCcCCCCCCHHHHHHHcCCHHHH
Confidence 889998 489999999999 999999999995 6 999999999999999999999999999
Q ss_pred HHHHHhhhcCC
Q 001971 872 HLVQKKINKRP 882 (988)
Q Consensus 872 eLL~~k~ak~~ 882 (988)
++|+.++++..
T Consensus 145 ~~Ll~~ga~~~ 155 (166)
T PHA02743 145 EILRANGAVCD 155 (166)
T ss_pred HHHHHcCCCCC
Confidence 99999988765
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=182.78 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=130.9
Q ss_pred hHHHHHHHHhhhc-Ccchhh-hhcCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHH
Q 001971 651 SEIRMLESALEFN-RTDADV-ERFGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMD 725 (988)
Q Consensus 651 sEI~~LE~~le~~-a~~~~~-~~~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave 725 (988)
.++..++.+++.+ ++.... ++.|.+++|.++. +.+..+.+|+.++......+ ....+|||+|+.
T Consensus 153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD-----------~~G~TPLH~Aa~ 221 (764)
T PHA02716 153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQN-----------NHLITPLHTYLI 221 (764)
T ss_pred CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCC-----------CCCCCHHHHHHH
Confidence 4566777777777 554443 5668888986542 12455667777664322222 235789999999
Q ss_pred cCc--hHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHH---HcCCHHHHHHHhccCCCccccccCccccc--cc-
Q 001971 726 HEW--CAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV---RKNSRPLVDLLLRFVPLEVSDRLGSENKA--LV- 797 (988)
Q Consensus 726 ~g~--~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AV---r~g~~eiVelLL~~~p~~~~~Ga~~~~~~--l~- 797 (988)
.|+ .++|+.||+.+++.+. ++..|+||||+|+ ..++.+++++|++..... +. ...+ +.
T Consensus 222 ~g~~~~eIVklLLe~GADVN~---------kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n---~~--~~~~~~L~~ 287 (764)
T PHA02716 222 TGNVCASVIKKIIELGGDMDM---------KCVNGMSPIMTYIINIDNINPEITNIYIESLDGN---KV--KNIPMILHS 287 (764)
T ss_pred cCCCCHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc---cc--ccchhhhHH
Confidence 885 4899999986553221 2445788888764 234445555444331000 00 0000 00
Q ss_pred --cccccc----------cccCCccCCCCCChHHHHHHh-hCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH
Q 001971 798 --DGVHKG----------FLFRPDVIGPAGLTPIHIAAG-KDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARL 864 (988)
Q Consensus 798 --~~s~~~----------y~fdpN~~d~~G~TPLHiAA~-~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~ 864 (988)
..+..+ ..-++|.+|..|+||||+|+. ..++.++|++|+++ ||+++++|..|+||||+|+.
T Consensus 288 ~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~------GADIN~kD~~G~TPLH~A~~ 361 (764)
T PHA02716 288 YITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY------GNDLNEPDNIGNTVLHTYLS 361 (764)
T ss_pred HHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc------CCCCccCCCCCCCHHHHHHH
Confidence 000000 012789999999999999865 25688999999999 99999999999999999875
Q ss_pred --------------cCCHHHHHHHHHhhhcCC
Q 001971 865 --------------RGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 865 --------------rGh~evveLL~~k~ak~~ 882 (988)
.++.+++++|.+++++..
T Consensus 362 ~lav~~~ld~~~~~~~~~eVVklLL~~GADIn 393 (764)
T PHA02716 362 MLSVVNILDPETDNDIRLDVIQCLISLGADIT 393 (764)
T ss_pred hhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence 378999999999998754
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-16 Score=153.71 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=103.6
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCH---HHHHHHhccCCCccccccCcc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSR---PLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~---eiVelLL~~~p~~~~~Ga~~~ 792 (988)
..+|||+|+..|+. +..++..... .+.........+..|.||||+|++.|+. +++++|+++ |+
T Consensus 17 g~tpLh~A~~~g~~--~~l~~~~~~~--~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-------ga--- 82 (154)
T PHA02736 17 GENILHYLCRNGGV--TDLLAFKNAI--SDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-------GA--- 82 (154)
T ss_pred CCCHHHHHHHhCCH--HHHHHHHHHh--cchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-------CC---
Confidence 57899999999973 3333221110 0000000112355689999999999986 468899999 77
Q ss_pred ccccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
++|.++ ..|.||||+|+. .|+.+++++|+.+. +++++.+|..|.||||+|+..|+.+++
T Consensus 83 --------------din~~~~~~g~T~Lh~A~~-~~~~~i~~~Ll~~~-----g~d~n~~~~~g~tpL~~A~~~~~~~i~ 142 (154)
T PHA02736 83 --------------DINGKERVFGNTPLHIAVY-TQNYELATWLCNQP-----GVNMEILNYAFKTPYYVACERHDAKMM 142 (154)
T ss_pred --------------CccccCCCCCCcHHHHHHH-hCCHHHHHHHHhCC-----CCCCccccCCCCCHHHHHHHcCCHHHH
Confidence 889888 589999999999 99999999999742 899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q 001971 872 HLVQKKINKR 881 (988)
Q Consensus 872 eLL~~k~ak~ 881 (988)
++|.+++++.
T Consensus 143 ~~Ll~~ga~~ 152 (154)
T PHA02736 143 NILRAKGAQC 152 (154)
T ss_pred HHHHHcCCCC
Confidence 9999988764
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=173.79 Aligned_cols=164 Identities=14% Similarity=0.008 Sum_probs=117.6
Q ss_pred cCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 672 FGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 672 ~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
.+.+.+|..+- +.+.-+.+|+.+++..... ...++||.|+..++.++|+.|+..+++. .+...
T Consensus 115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~-------------~~~t~lh~A~~~~~~eIVk~Lls~Ga~~-~n~~~ 180 (437)
T PHA02795 115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI-------------ECLNAYFRGICKKESSVVEFILNCGIPD-ENDVK 180 (437)
T ss_pred cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC-------------CCCCHHHHHHHcCcHHHHHHHHhcCCcc-ccccc
Confidence 34566666552 4555666666666432211 1135777777777777777777754421 10000
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS 828 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~ 828 (988)
.++ ....+.|++|.|+..++.++|++|+.+ |+ ++|.+|..|.||||+|+. .|+
T Consensus 181 -~~l-~~~~~~t~l~~a~~~~~~eIve~LIs~-------GA-----------------DIN~kD~~G~TpLh~Aa~-~g~ 233 (437)
T PHA02795 181 -LDL-YKIIQYTRGFLVDEPTVLEIYKLCIPY-------IE-----------------DINQLDAGGRTLLYRAIY-AGY 233 (437)
T ss_pred -chh-hhhhccchhHHHHhcCHHHHHHHHHhC-------cC-----------------CcCcCCCCCCCHHHHHHH-cCC
Confidence 000 112355777777777777777777777 66 899999999999999999 999
Q ss_pred HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC--------CHHHHHHHHHhhhcCC
Q 001971 829 EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG--------HYSYIHLVQKKINKRP 882 (988)
Q Consensus 829 ~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG--------h~evveLL~~k~ak~~ 882 (988)
.++|++|+++ ||++|++|..|.||||+|+.+| |.+++++|.+++++..
T Consensus 234 ~eiVelLL~~------GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 234 IDLVSWLLEN------GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred HHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 9999999999 9999999999999999999998 5799999999887554
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-16 Score=180.58 Aligned_cols=126 Identities=26% Similarity=0.292 Sum_probs=112.0
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.-++||.|+-++..+|+|+|++..++.+.--| ..+-||||+|+++|+..||++||++ ||
T Consensus 78 g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG--------~l~stPLHWAar~G~~~vv~lLlqh-------GA------ 136 (600)
T KOG0509|consen 78 GVTLLHWAAINNRLDVARYLISHGADVNAIGG--------VLGSTPLHWAARNGHISVVDLLLQH-------GA------ 136 (600)
T ss_pred CccceeHHHHcCcHHHHHHHHHcCCCccccCC--------CCCCCcchHHHHcCcHHHHHHHHHc-------CC------
Confidence 45799999999999999999997665332111 2256999999999999999999999 99
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+|+++|..|.||||+||. .|+.-+|-+|+.+ +++++.+|.+|+||||||+.+|+...+.+|.
T Consensus 137 -----------dpt~~D~~G~~~lHla~~-~~~~~~vayll~~------~~d~d~~D~~grTpLmwAaykg~~~~v~~LL 198 (600)
T KOG0509|consen 137 -----------DPTLKDKQGLTPLHLAAQ-FGHTALVAYLLSK------GADIDLRDNNGRTPLMWAAYKGFALFVRRLL 198 (600)
T ss_pred -----------CCceecCCCCcHHHHHHH-hCchHHHHHHHHh------cccCCCcCCCCCCHHHHHHHhcccHHHHHHH
Confidence 999999999999999999 9999999999999 8999999999999999999999998788888
Q ss_pred Hhhhc
Q 001971 876 KKINK 880 (988)
Q Consensus 876 ~k~ak 880 (988)
+.++.
T Consensus 199 ~f~a~ 203 (600)
T KOG0509|consen 199 KFGAS 203 (600)
T ss_pred Hhccc
Confidence 77653
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=182.02 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++|..|..|+||||+|+...++.+++.+|+++ |+++|.+|..|.||||+|+.+|+.+++++|.+++++..
T Consensus 333 din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~------gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 333 DVNAADRLYITPLHQASTLDRNKDIVITLLEL------GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402 (682)
T ss_pred CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 67888888888888888755678888888888 88888888888888888888888888888888876543
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-16 Score=191.44 Aligned_cols=95 Identities=29% Similarity=0.306 Sum_probs=90.4
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
...+.||||.||.+|+..+|++||++ |+ +++++++.|+||||.||. .|+.+|+.+
T Consensus 537 ~~r~~TpLh~A~~~g~v~~VkfLLe~-------gA-----------------dv~ak~~~G~TPLH~Aa~-~G~~~i~~L 591 (1143)
T KOG4177|consen 537 TGRGYTPLHVAVHYGNVDLVKFLLEH-------GA-----------------DVNAKDKLGYTPLHQAAQ-QGHNDIAEL 591 (1143)
T ss_pred cccccchHHHHHhcCCchHHHHhhhC-------Cc-----------------cccccCCCCCChhhHHHH-cChHHHHHH
Confidence 34577999999999999999999999 88 899999999999999999 999999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
|+++ ||++|+.|.+|.||||+|...|+++++++|...+++
T Consensus 592 Llk~------GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 592 LLKH------GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred HHHc------CCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 9999 999999999999999999999999999999988776
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=178.01 Aligned_cols=204 Identities=11% Similarity=0.091 Sum_probs=143.4
Q ss_pred CCcceeecc-hhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHH---HH-HhHhhcccccccccCCCCCCCCCc
Q 001971 638 TFFPFIVAE-EDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFI---HE-IGWLFHRSQSKSRLGHLDPNTDLF 711 (988)
Q Consensus 638 ~ffP~LVad-~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL---~E-IGWLLqr~~~~~~~~~~d~~~~l~ 711 (988)
+-.|+++|+ +..++-++.++.+++.|+.....+..|.+++|.++ .+.+ .+ +..|+...... + . .
T Consensus 32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~---n-~----~-- 101 (661)
T PHA02917 32 KNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS---N-I----N-- 101 (661)
T ss_pred CCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC---C-C----C--
Confidence 468999876 45667888999999999887666778999999988 4443 22 33454432110 1 1 1
Q ss_pred cccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHH--HcCCHHHHHHHhccCCCcccccc
Q 001971 712 PLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV--RKNSRPLVDLLLRFVPLEVSDRL 789 (988)
Q Consensus 712 qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AV--r~g~~eiVelLL~~~p~~~~~Ga 789 (988)
....++++|+..++.++|++||+.+++.+. ++..|+||||.|+ ..|+.++|++||++ |+
T Consensus 102 ---~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~---------~d~~g~T~L~~~~a~~~~~~eivklLi~~-------Ga 162 (661)
T PHA02917 102 ---DFNIFSYMKSKNVDVDLIKVLVEHGFDLSV---------KCENHRSVIENYVMTDDPVPEIIDLFIEN-------GC 162 (661)
T ss_pred ---CcchHHHHHhhcCCHHHHHHHHHcCCCCCc---------cCCCCccHHHHHHHccCCCHHHHHHHHHc-------CC
Confidence 112467889999999999999996554321 3456899999654 57899999999999 77
Q ss_pred CccccccccccccccccCCccCCCCCChHHHHHHhh----------CCCHHHHHHhhcCCCCCccccccccCCCCCCCHH
Q 001971 790 GSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGK----------DGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPE 859 (988)
Q Consensus 790 ~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~----------~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPL 859 (988)
+...+- .....+|.|+ +...+.+.||||+|+.. .++.++|++|+++ ||++|.+|.+|.|||
T Consensus 163 ~vn~~d--~~~~~g~~~~-~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~------Gadvn~~d~~G~TpL 233 (661)
T PHA02917 163 SVLYED--EDDEYGYAYD-DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH------GIKPSSIDKNYCTAL 233 (661)
T ss_pred Cccccc--cccccccccc-cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC------CCCcccCCCCCCcHH
Confidence 211000 0000111111 22234457999999751 3588999999999 999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHhhhc
Q 001971 860 DYARLRGHY--SYIHLVQKKINK 880 (988)
Q Consensus 860 h~A~~rGh~--evveLL~~k~ak 880 (988)
|+|+..||. +++++|.+ +++
T Consensus 234 h~A~~~g~~~~eivk~Li~-g~d 255 (661)
T PHA02917 234 QYYIKSSHIDIDIVKLLMK-GID 255 (661)
T ss_pred HHHHHcCCCcHHHHHHHHh-CCc
Confidence 999999995 79999975 554
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=178.94 Aligned_cols=191 Identities=15% Similarity=-0.027 Sum_probs=131.3
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH-HHH--HHHhHhhcccccccccCCCCCCCCCccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM-DFI--HEIGWLFHRSQSKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~fL--~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R 715 (988)
..|++.+....-..+..+|.+++.|+.....+..|.+++|.++. +.+ ..+..|+.++......+. .
T Consensus 178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~-----------~ 246 (764)
T PHA02716 178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV-----------N 246 (764)
T ss_pred CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC-----------C
Confidence 55666433222234566677777776655555667777777773 322 345566666543222221 2
Q ss_pred cchHHHH-------------------------------------HHHcCchHHHHHHhhhhccccccCCCCCchhhccCC
Q 001971 716 FKWLIEF-------------------------------------SMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTE 758 (988)
Q Consensus 716 ~k~lL~~-------------------------------------Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G 758 (988)
..+|||+ |+..|+.++|+.||+.+++. . .++..|
T Consensus 247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI----N-----~kD~~G 317 (764)
T PHA02716 247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL----H-----YKDSAG 317 (764)
T ss_pred CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce----e-----ccCCCC
Confidence 3445544 44556666777776643321 1 134568
Q ss_pred CcHHHHHHH--cCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhh-----------
Q 001971 759 LGLLHRAVR--KNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGK----------- 825 (988)
Q Consensus 759 ~TpLH~AVr--~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~----------- 825 (988)
.||||+|+. .++.++|++||+. |+ ++|.+|..|.||||+|+..
T Consensus 318 ~TPLH~Aaa~~~~~~eIVklLLe~-------GA-----------------DIN~kD~~G~TPLH~A~~~lav~~~ld~~~ 373 (764)
T PHA02716 318 RTCLHQYILRHNISTDIIKLLHEY-------GN-----------------DLNEPDNIGNTVLHTYLSMLSVVNILDPET 373 (764)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHc-------CC-----------------CCccCCCCCCCHHHHHHHhhhhhccccccc
Confidence 899999875 4578999999999 88 8999999999999998751
Q ss_pred --CCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHH----HHHcCCHHHHHHHHHhhh
Q 001971 826 --DGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDY----ARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 826 --~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~----A~~rGh~evveLL~~k~a 879 (988)
.++.++|++|+++ ||+++++|..|.||||. |...++.+++++|..+++
T Consensus 374 ~~~~~~eVVklLL~~------GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~ 427 (764)
T PHA02716 374 DNDIRLDVIQCLISL------GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV 427 (764)
T ss_pred cccChHHHHHHHHHC------CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence 3688999999999 99999999999999993 233578999999988754
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=179.08 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=118.5
Q ss_pred CCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCc
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~ 751 (988)
...+++.+| .+....+..+++++......+ ..+++|||+|+.+|+.++|+.||+..++.+
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d-----------~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-------- 585 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLKAKLDPDIGD-----------SKGRTPLHIAASKGYEDCVLVLLKHACNVH-------- 585 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------CCCCCHHHHHHHcChHHHHHHHHhcCCCCC--------
Confidence 345677777 466666777776664322222 235789999999999999999988544321
Q ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
..+..|.||||.|++.|+.++|++|++. ++ .. ....|.||||.||. .|+.++
T Consensus 586 -~~d~~G~TpL~~A~~~g~~~iv~~L~~~-------~~-----------------~~--~~~~~~~~L~~Aa~-~g~~~~ 637 (823)
T PLN03192 586 -IRDANGNTALWNAISAKHHKIFRILYHF-------AS-----------------IS--DPHAAGDLLCTAAK-RNDLTA 637 (823)
T ss_pred -CcCCCCCCHHHHHHHhCCHHHHHHHHhc-------Cc-----------------cc--CcccCchHHHHHHH-hCCHHH
Confidence 1245688999999999999999999877 33 11 12356789999999 899999
Q ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 832 LDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++|+++ |+++|++|.+|.||||+|+..||.+++++|.+++++..
T Consensus 638 v~~Ll~~------Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~ 682 (823)
T PLN03192 638 MKELLKQ------GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682 (823)
T ss_pred HHHHHHC------CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 9999998 89999999999999999999999999999998887654
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=166.91 Aligned_cols=179 Identities=16% Similarity=0.056 Sum_probs=138.5
Q ss_pred HHHHHHHHhhhcCcchhhhhcCCcccHHHHH-H--HHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcC-
Q 001971 652 EIRMLESALEFNRTDADVERFGKIDTKNQAM-D--FIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHE- 727 (988)
Q Consensus 652 EI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~--fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g- 727 (988)
.++.++.+++.|++.... ..|.+++|..+. . ....+..|++++......+ ...+|||.|+.++
T Consensus 15 ~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~------------~~~tpL~~a~~~~~ 81 (494)
T PHA02989 15 DKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG------------YIETPLCAVLRNRE 81 (494)
T ss_pred cHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC------------CCCCcHHHHHhccC
Confidence 456777888888865443 457777776552 2 4566778888775332221 1368999987654
Q ss_pred -----chHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccccccccc
Q 001971 728 -----WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENKALVDG 799 (988)
Q Consensus 728 -----~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~ 799 (988)
+.++|+.||+.+++.+. .+..|.||||.|+.. ++.++|++||++ |+
T Consensus 82 ~~~~~~~~iv~~Ll~~Gadin~---------~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-------Ga---------- 135 (494)
T PHA02989 82 ITSNKIKKIVKLLLKFGADINL---------KTFNGVSPIVCFIYNSNINNCDMLRFLLSK-------GI---------- 135 (494)
T ss_pred cchhhHHHHHHHHHHCCCCCCC---------CCCCCCcHHHHHHHhcccCcHHHHHHHHHC-------CC----------
Confidence 46799999997654221 245688999998865 689999999999 88
Q ss_pred cccccccCC-ccCCCCCChHHHHHHh-hCCCHHHHHHhhcCCCCCcccccccc-CCCCCCCHHHHHHHcC----CHHHHH
Q 001971 800 VHKGFLFRP-DVIGPAGLTPIHIAAG-KDGSEDVLDALTDDPGMVGIEAWKNA-RDSSGSTPEDYARLRG----HYSYIH 872 (988)
Q Consensus 800 s~~~y~fdp-N~~d~~G~TPLHiAA~-~~G~~eVV~lLL~~p~~vg~gAdvna-rD~~G~TPLh~A~~rG----h~evve 872 (988)
++ +..|..|+||||+|+. ..++.++|++|+++ ||+++. .|..|.||||+|...+ +.++++
T Consensus 136 -------din~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~------Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~ 202 (494)
T PHA02989 136 -------NVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF------GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIK 202 (494)
T ss_pred -------CcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc------CCCccccccccCCChHHHHHhcccccccHHHHH
Confidence 88 7899999999999875 24789999999999 999999 6889999999998764 899999
Q ss_pred HHHHhhhcCC
Q 001971 873 LVQKKINKRP 882 (988)
Q Consensus 873 LL~~k~ak~~ 882 (988)
+|.+++++..
T Consensus 203 ~Ll~~Ga~vn 212 (494)
T PHA02989 203 YLIKKGVNIE 212 (494)
T ss_pred HHHhCCCCcc
Confidence 9999998754
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=158.93 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=102.5
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
..+|+.|+..++.++++.||+.+++.+.. ... .+..|.||||+|++.++.+++++|+++ |+
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~----~~~-sd~~g~TpLh~Aa~~~~~eivklLL~~-------GA------- 94 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAP----FPL-SENSKTNPLIYAIDCDNDDAAKLLIRY-------GA------- 94 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCcccc----Ccc-cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-------
Confidence 56889999999999999999976543211 100 123588999999999999999999999 88
Q ss_pred ccccccccccCCccC-CCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVI-GPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~-d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|.. +..|.||||+|+. .|+.+++++|+++ ||+++.+|..|.||||+|+..++..++.++
T Consensus 95 ----------DVN~~~~~~g~TpLh~Aa~-~~~~eivklLL~~------GAdin~kd~~G~TpL~~A~~~~~~~~~~~~ 156 (300)
T PHA02884 95 ----------DVNRYAEEAKITPLYISVL-HGCLKCLEILLSY------GADINIQTNDMVTPIELALMICNNFLAFMI 156 (300)
T ss_pred ----------CcCcccCCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence 89986 4689999999999 9999999999999 999999999999999999987765554443
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-15 Score=166.01 Aligned_cols=188 Identities=18% Similarity=0.129 Sum_probs=142.1
Q ss_pred hhHHHHHHHHhhhcCcchhh-----hhcCCcccHHHH-HHHHHHHhHhhcccccccc---cCCCCCCCCCccccccchHH
Q 001971 650 CSEIRMLESALEFNRTDADV-----ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSR---LGHLDPNTDLFPLRRFKWLI 720 (988)
Q Consensus 650 CsEI~~LE~~le~~a~~~~~-----~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~---~~~~d~~~~l~qi~R~k~lL 720 (988)
-+-+..|..++..++..+-. ..+|.+++=.+| -+++..+.+|+.+.....- ..++| -..| ..-.||
T Consensus 14 ~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FD----ge~I-egappL 88 (615)
T KOG0508|consen 14 DGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFD----GETI-EGAPPL 88 (615)
T ss_pred hhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeC----Cccc-CCCchh
Confidence 34555555555544421111 124667776666 5777777777775532111 11111 1111 345688
Q ss_pred HHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccccc
Q 001971 721 EFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGV 800 (988)
Q Consensus 721 ~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s 800 (988)
-.|+-.||.+|||.|+...++ |+ .. ....-|||-.||..|+.++|++|+++ |+
T Consensus 89 WaAsaAGHl~vVk~L~~~ga~--VN--~t-----T~TNStPLraACfDG~leivKyLvE~-------ga----------- 141 (615)
T KOG0508|consen 89 WAASAAGHLEVVKLLLRRGAS--VN--DT-----TRTNSTPLRAACFDGHLEIVKYLVEH-------GA----------- 141 (615)
T ss_pred hHHhccCcHHHHHHHHHhcCc--cc--cc-----cccCCccHHHHHhcchhHHHHHHHHc-------CC-----------
Confidence 899999999999999997642 22 11 22244999999999999999999999 88
Q ss_pred ccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 801 HKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 801 ~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
||++.|..|.|.|||||. .|+.+|+++|++. |||+|+++..|.|+||.+++.||.+++++|.+.+++
T Consensus 142 ------d~~IanrhGhTcLmIa~y-kGh~~I~qyLle~------gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~ 208 (615)
T KOG0508|consen 142 ------DPEIANRHGHTCLMIACY-KGHVDIAQYLLEQ------GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK 208 (615)
T ss_pred ------CCcccccCCCeeEEeeec-cCchHHHHHHHHh------CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce
Confidence 999999999999999999 9999999999999 999999999999999999999999999999998886
Q ss_pred CC
Q 001971 881 RP 882 (988)
Q Consensus 881 ~~ 882 (988)
..
T Consensus 209 i~ 210 (615)
T KOG0508|consen 209 ID 210 (615)
T ss_pred ee
Confidence 54
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-15 Score=180.88 Aligned_cols=128 Identities=26% Similarity=0.250 Sum_probs=93.3
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
+.++||.|...||.++++.|++..+.. .+ ....+.++||.|...+...+++.|++. |+
T Consensus 474 G~T~Lhlaaq~Gh~~~~~llle~~~~~--------~~-~~~~~l~~lhla~~~~~v~~~~~l~~~-------ga------ 531 (1143)
T KOG4177|consen 474 GFTPLHLAAQEGHTEVVQLLLEGGAND--------NL-DAKKGLTPLHLAADEDTVKVAKILLEH-------GA------ 531 (1143)
T ss_pred cCcchhhhhccCCchHHHHhhhcCCcc--------Cc-cchhccchhhhhhhhhhHHHHHHHhhc-------CC------
Confidence 344555555555555555555422110 00 122244555555555555555555555 44
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+++.++..|.||||+|+. .|+.++|++|+++ ||+++++|+.|+||||.|+..||.+++++|.
T Consensus 532 -----------~v~~~~~r~~TpLh~A~~-~g~v~~VkfLLe~------gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl 593 (1143)
T KOG4177|consen 532 -----------NVDLRTGRGYTPLHVAVH-YGNVDLVKFLLEH------GADVNAKDKLGYTPLHQAAQQGHNDIAELLL 593 (1143)
T ss_pred -----------ceehhcccccchHHHHHh-cCCchHHHHhhhC------CccccccCCCCCChhhHHHHcChHHHHHHHH
Confidence 778899999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcCCC
Q 001971 876 KKINKRPN 883 (988)
Q Consensus 876 ~k~ak~~~ 883 (988)
+.++....
T Consensus 594 k~GA~vna 601 (1143)
T KOG4177|consen 594 KHGASVNA 601 (1143)
T ss_pred HcCCCCCc
Confidence 99987653
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-14 Score=174.10 Aligned_cols=172 Identities=14% Similarity=0.101 Sum_probs=141.7
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
-.|++.|.. -+....++.+++.+++....+..|++++|.+| .+...-+..|++++......+ ...+
T Consensus 526 ~~~L~~Aa~--~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d-----------~~G~ 592 (823)
T PLN03192 526 ASNLLTVAS--TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-----------ANGN 592 (823)
T ss_pred hhHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC-----------CCCC
Confidence 455555544 37788899999999887766788999999999 588888888888774322222 2358
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
+|||+|+..|+.++++.|++.... . ....+.++||.||.+|+.++|++||++ |+
T Consensus 593 TpL~~A~~~g~~~iv~~L~~~~~~--------~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-------Ga-------- 646 (823)
T PLN03192 593 TALWNAISAKHHKIFRILYHFASI--------S---DPHAAGDLLCTAAKRNDLTAMKELLKQ-------GL-------- 646 (823)
T ss_pred CHHHHHHHhCCHHHHHHHHhcCcc--------c---CcccCchHHHHHHHhCCHHHHHHHHHC-------CC--------
Confidence 899999999999999999874221 0 112355999999999999999999999 88
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCC-CCHHHHHHHc
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSG-STPEDYARLR 865 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G-~TPLh~A~~r 865 (988)
++|.+|.+|.||||+|+. .|+.++|++|+++ ||+++.+|..| .||++++...
T Consensus 647 ---------din~~d~~G~TpLh~A~~-~g~~~iv~~Ll~~------GAdv~~~~~~g~~t~~~l~~~~ 699 (823)
T PLN03192 647 ---------NVDSEDHQGATALQVAMA-EDHVDMVRLLIMN------GADVDKANTDDDFSPTELRELL 699 (823)
T ss_pred ---------CCCCCCCCCCCHHHHHHH-CCcHHHHHHHHHc------CCCCCCCCCCCCCCHHHHHHHH
Confidence 899999999999999999 9999999999999 99999999988 9999888654
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=166.61 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=135.8
Q ss_pred HHHHHHHhhhcCcchhhhhcCCcccHHHHH----HHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCc
Q 001971 653 IRMLESALEFNRTDADVERFGKIDTKNQAM----DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEW 728 (988)
Q Consensus 653 I~~LE~~le~~a~~~~~~~~g~~~lh~~am----~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~ 728 (988)
++.+.+++..+....+.+++|.+++|.+|. +.+..+..||.++......+ ....+|||+|+..|+
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~-----------~~g~TpL~~Aa~~g~ 80 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKN-----------WRQLTPLEEYTNSRH 80 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccC-----------CCCCCHHHHHHHcCC
Confidence 556666776566555457789999999752 56888888888875332222 235789999999999
Q ss_pred hHHHHHHhhhhcccc--ccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccccccccccc
Q 001971 729 CAVVKKLLHILLDGT--VSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLF 806 (988)
Q Consensus 729 ~aVVk~LL~~l~dg~--vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~f 806 (988)
.++++.+...+.+.. ++.. ...+++|.|+.+++.++|++||++ |+
T Consensus 81 ~~v~~~~~~~Ll~~~~~~n~~---------~~~~~~~~a~~~~~~e~vk~Ll~~-------Ga----------------- 127 (661)
T PHA02917 81 VKVNKDIAMALLEATGYSNIN---------DFNIFSYMKSKNVDVDLIKVLVEH-------GF----------------- 127 (661)
T ss_pred hhHHHHHHHHHHhccCCCCCC---------CcchHHHHHhhcCCHHHHHHHHHc-------CC-----------------
Confidence 776654444333211 1111 122678889999999999999999 88
Q ss_pred CCccCCCCCChHHHHHHh-hCCCHHHHHHhhcCCCCCccccccccCCC---CC-----------CCHHHHHHH-------
Q 001971 807 RPDVIGPAGLTPIHIAAG-KDGSEDVLDALTDDPGMVGIEAWKNARDS---SG-----------STPEDYARL------- 864 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~-~~G~~eVV~lLL~~p~~vg~gAdvnarD~---~G-----------~TPLh~A~~------- 864 (988)
++|.+|..|+||||+|+. ..|+.+||++|+++ ||++|.+|. .| .||||+|+.
T Consensus 128 din~~d~~g~T~L~~~~a~~~~~~eivklLi~~------Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~ 201 (661)
T PHA02917 128 DLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN------GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSES 201 (661)
T ss_pred CCCccCCCCccHHHHHHHccCCCHHHHHHHHHc------CCCccccccccccccccccccccccccHHHHHHhhcccccc
Confidence 999999999999997543 37899999999999 999987764 34 599999986
Q ss_pred ----cCCHHHHHHHHHhhhcCC
Q 001971 865 ----RGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 865 ----rGh~evveLL~~k~ak~~ 882 (988)
++|.+++++|++.+++..
T Consensus 202 ~~~~~~~~eiv~~Li~~Gadvn 223 (661)
T PHA02917 202 DTRAYVRPEVVKCLINHGIKPS 223 (661)
T ss_pred cccccCcHHHHHHHHHCCCCcc
Confidence 568999999999988755
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=125.51 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=77.8
Q ss_pred HHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCC
Q 001971 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGM 841 (988)
Q Consensus 762 LH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~ 841 (988)
||.||+.|+.+++++|++. +. +++. |.||||+|+. .|+.+++++|+++
T Consensus 1 L~~A~~~~~~~~~~~ll~~-------~~-----------------~~~~----~~~~l~~A~~-~~~~~~~~~Ll~~--- 48 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEK-------GA-----------------DINL----GNTALHYAAE-NGNLEIVKLLLEN--- 48 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHT-------TS-----------------TTTS----SSBHHHHHHH-TTTHHHHHHHHHT---
T ss_pred CHHHHHcCCHHHHHHHHHC-------cC-----------------CCCC----CCCHHHHHHH-cCCHHHHHHHHHh---
Confidence 8999999999999999998 44 4444 8999999999 9999999999999
Q ss_pred CccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 842 VGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 842 vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|++++.+|.+|+||||+|+..|+.+++++|.+++.+..
T Consensus 49 ---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 49 ---GADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVN 86 (89)
T ss_dssp ---TTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred ---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999987654
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-14 Score=155.41 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=113.9
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCC---CCc----------------------------hhhccCCCcHHHH
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE---HPS----------------------------LDLALTELGLLHR 764 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~---~~~----------------------------l~~~l~G~TpLH~ 764 (988)
++++||||+.+.+.+||+.||+..+.. ||... ..+ ......|.|+|++
T Consensus 268 GNTALHYsVSHaNF~VV~~LLDSgvC~-VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML 346 (452)
T KOG0514|consen 268 GNTALHYAVSHANFDVVSILLDSGVCD-VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML 346 (452)
T ss_pred CCeeeeeeecccchHHHHHHhccCccc-ccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence 588999999999999999999965431 11100 000 0011237799999
Q ss_pred HHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCcc
Q 001971 765 AVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGI 844 (988)
Q Consensus 765 AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~ 844 (988)
||..|..+||+.||.- |+ |+|++|.+|-|+|+.||. +||.|||++||..|
T Consensus 347 AVSHGr~d~vk~LLac-------gA-----------------dVNiQDdDGSTALMCA~E-HGhkEivklLLA~p----- 396 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLAC-------GA-----------------DVNIQDDDGSTALMCAAE-HGHKEIVKLLLAVP----- 396 (452)
T ss_pred hhhcCcHHHHHHHHHc-------cC-----------------CCccccCCccHHHhhhhh-hChHHHHHHHhccC-----
Confidence 9999999999999999 88 999999999999999999 99999999999998
Q ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 845 EAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 845 gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++|+...|.+|.|+|.+|-..||.+|.-||..+.+-+.
T Consensus 397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~~ 434 (452)
T KOG0514|consen 397 SCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIKR 434 (452)
T ss_pred cccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999988876544
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=140.89 Aligned_cols=120 Identities=23% Similarity=0.184 Sum_probs=103.3
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
.++..|++.+....|+.||..-++ .|+ .++.+|+||||+|+++|+.+||+.||.+ ||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an-~vN-------trD~D~YTpLHRAaYn~h~div~~ll~~-------gA-------- 121 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKAN-HVN-------TRDEDEYTPLHRAAYNGHLDIVHELLLS-------GA-------- 121 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccc-ccc-------ccccccccHHHHHHhcCchHHHHHHHHc-------cC--------
Confidence 578889999999999999984221 121 2567799999999999999999999999 88
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCC-HHHHHHHHH
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH-YSYIHLVQK 876 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh-~evveLL~~ 876 (988)
+++++...|+||||-|+. ..+.+|+-.|+.+ |||+||....-+||||+|+...+ ...+++|..
T Consensus 122 ---------n~~a~T~~GWTPLhSAck-WnN~~va~~LLqh------gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 122 ---------NKEAKTNEGWTPLHSACK-WNNFEVAGRLLQH------GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred ---------CcccccccCccchhhhhc-ccchhHHHHHHhc------cCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 899999999999999999 9999999999999 99999999999999999998654 455666654
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=158.06 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=109.0
Q ss_pred cchHHHHHHH--cCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc
Q 001971 716 FKWLIEFSMD--HEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 716 ~k~lL~~Ave--~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
.+++||+++. .|+.++|++||+++++.+. ..+.||||.|+..++.++|++|+.+ |++...
T Consensus 116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-----------~~~~t~lh~A~~~~~~eIVk~Lls~-------Ga~~~n 177 (437)
T PHA02795 116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-----------IECLNAYFRGICKKESSVVEFILNC-------GIPDEN 177 (437)
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-----------CCCCCHHHHHHHcCcHHHHHHHHhc-------CCcccc
Confidence 5889999999 8999999999997664322 1246999999999999999999999 551100
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
..+.+..+..+.||+|+|+. .++.+++++|+++ ||++|.+|..|.||||+|+..||.+++++
T Consensus 178 -----------~~~~~l~~~~~~t~l~~a~~-~~~~eIve~LIs~------GADIN~kD~~G~TpLh~Aa~~g~~eiVel 239 (437)
T PHA02795 178 -----------DVKLDLYKIIQYTRGFLVDE-PTVLEIYKLCIPY------IEDINQLDAGGRTLLYRAIYAGYIDLVSW 239 (437)
T ss_pred -----------cccchhhhhhccchhHHHHh-cCHHHHHHHHHhC------cCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence 00112223468899999999 9999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 001971 874 VQKKINKRP 882 (988)
Q Consensus 874 L~~k~ak~~ 882 (988)
|.+++++..
T Consensus 240 LL~~GAdIN 248 (437)
T PHA02795 240 LLENGANVN 248 (437)
T ss_pred HHHCCCCCC
Confidence 999998754
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=167.10 Aligned_cols=209 Identities=15% Similarity=0.026 Sum_probs=136.8
Q ss_pred CCccee-ecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCccc
Q 001971 638 TFFPFI-VAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPL 713 (988)
Q Consensus 638 ~ffP~L-Vad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi 713 (988)
+-.|++ .|... ......|.+++.++ .+..|.+++|.++. +.+.++-..+.....................
T Consensus 52 G~t~Lh~~A~~~--~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 125 (743)
T TIGR00870 52 GRSALFVAAIEN--ENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF 125 (743)
T ss_pred chhHHHHHHHhc--ChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccccc
Confidence 366887 54333 33444555666655 23468899998885 3343333332222110000000000111223
Q ss_pred cccchHHHHHHHcCchHHHHHHhhhhccccccCCCC-----CchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccc
Q 001971 714 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEH-----PSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDR 788 (988)
Q Consensus 714 ~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~-----~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~G 788 (988)
....+|||+|+.+|+.++|+.||+.+++.+...... ........|.||||.|+..|+.+++++|+++ |
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-------g 198 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED-------P 198 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC-------C
Confidence 457899999999999999999999876544221110 0001123477999999999999999999999 7
Q ss_pred cCccccccccccccccccCCccCCCCCChHHHHHHhhCC---------CHHHHHHhhcCCCCCcccccc----ccCCCCC
Q 001971 789 LGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDG---------SEDVLDALTDDPGMVGIEAWK----NARDSSG 855 (988)
Q Consensus 789 a~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G---------~~eVV~lLL~~p~~vg~gAdv----narD~~G 855 (988)
+ ++|.+|..|+||||+|+. .+ ...+.+++++... -..+. +..|.+|
T Consensus 199 a-----------------din~~d~~g~T~Lh~A~~-~~~~~~~~~~l~~~~~~~l~~ll~---~~~~~~el~~i~N~~g 257 (743)
T TIGR00870 199 A-----------------DILTADSLGNTLLHLLVM-ENEFKAEYEELSCQMYNFALSLLD---KLRDSKELEVILNHQG 257 (743)
T ss_pred c-----------------chhhHhhhhhHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHh---ccCChHhhhhhcCCCC
Confidence 7 899999999999999999 65 2345666665500 02233 6789999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 856 STPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 856 ~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
.||||+|+..||.+++++|.+...+
T Consensus 258 ~TPL~~A~~~g~~~l~~lLL~~~~~ 282 (743)
T TIGR00870 258 LTPLKLAAKEGRIVLFRLKLAIKYK 282 (743)
T ss_pred CCchhhhhhcCCccHHHHHHHHHHh
Confidence 9999999999999999999886443
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-14 Score=153.25 Aligned_cols=94 Identities=26% Similarity=0.296 Sum_probs=89.2
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
.-|..|||+|++.|+..+||.||.. |+ ++|..+....||||+||. +||.+||..|
T Consensus 32 dhgfsplhwaakegh~aivemll~r-------ga-----------------rvn~tnmgddtplhlaaa-hghrdivqkl 86 (448)
T KOG0195|consen 32 DHGFSPLHWAAKEGHVAIVEMLLSR-------GA-----------------RVNSTNMGDDTPLHLAAA-HGHRDIVQKL 86 (448)
T ss_pred ccCcchhhhhhhcccHHHHHHHHhc-------cc-----------------ccccccCCCCcchhhhhh-cccHHHHHHH
Confidence 3488999999999999999999999 88 899999999999999999 9999999999
Q ss_pred hcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 836 TDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
+.+ .||+|+.++.|.|||||||.-|...|++-|+..++.
T Consensus 87 l~~------kadvnavnehgntplhyacfwgydqiaedli~~ga~ 125 (448)
T KOG0195|consen 87 LSR------KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA 125 (448)
T ss_pred HHH------hcccchhhccCCCchhhhhhhcHHHHHHHHHhccce
Confidence 999 999999999999999999999999999999987763
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=161.42 Aligned_cols=201 Identities=15% Similarity=0.094 Sum_probs=102.0
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHHHHHHHH-hHhhcccccccccCCCCCCCCCccccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEI-GWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am~fL~EI-GWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
..|+.+|... +-...|..+++++++....++++.+++|.+|..-=.|. .-|++...-...++ .+..
T Consensus 122 ~aplh~A~~~--~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~-----------~~~~ 188 (929)
T KOG0510|consen 122 NAPLHLAADS--GNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSD-----------IDGN 188 (929)
T ss_pred cCchhhcccc--chHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCccc-----------CcCC
Confidence 4455665544 33456666667765554445667777777774322332 23333332111111 2345
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
+++|.|+..+..+..+..++ +.++..+..... .+..+.||||.||..|+.++++.+|+.... ++...
T Consensus 189 ~~iH~aa~s~s~e~mEi~l~---~~g~~r~~~in~-~~n~~~~pLhlAve~g~~e~lk~~L~n~~~----~a~~~----- 255 (929)
T KOG0510|consen 189 FPIHEAARSGSKECMEIFLP---EHGYERQTHINF-DNNEKATPLHLAVEGGDIEMLKMCLQNGKK----IADVQ----- 255 (929)
T ss_pred chHHHHHHhcchhhhhhhhc---cccchhhccccc-ccCCCCcchhhhhhcCCHHHHHHHHhCccc----cchhh-----
Confidence 66777777777777766665 111212222221 233467999999999999999999988321 11000
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
.++...-.--+|..|.+|.||||+||. +|+.+.|+.|+.. ||+++.+++++.||||.|+.+|++..++
T Consensus 256 ~~~~~q~kelv~~~d~dg~tpLH~a~r-~G~~~svd~Ll~~------Ga~I~~kn~d~~spLH~AA~yg~~ntv~ 323 (929)
T KOG0510|consen 256 LDAMQQEKELVNDEDNDGCTPLHYAAR-QGGPESVDNLLGF------GASINSKNKDEESPLHFAAIYGRINTVE 323 (929)
T ss_pred hHHHHHHHHHhhcccccCCchHHHHHH-cCChhHHHHHHHc------CCcccccCCCCCCchHHHHHcccHHHHH
Confidence 000000001234445555555555555 5555555555554 4555444444444444444444444443
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=166.16 Aligned_cols=196 Identities=19% Similarity=0.127 Sum_probs=124.2
Q ss_pred hHHHHHHHHhhh--cCcchhhhhcCCcccHHHH-H-HHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHc
Q 001971 651 SEIRMLESALEF--NRTDADVERFGKIDTKNQA-M-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDH 726 (988)
Q Consensus 651 sEI~~LE~~le~--~a~~~~~~~~g~~~lh~~a-m-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~ 726 (988)
+++..+...++. +.+....+..|++++|..| . +.+-.+..|+..+. .+ .-.+++||.|+..
T Consensus 28 g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~-----------~~G~T~Lh~A~~~ 92 (743)
T TIGR00870 28 GDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RG-----------AVGDTLLHAISLE 92 (743)
T ss_pred CCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC-----------CcChHHHHHHHhc
Confidence 556666666655 3333223467999999544 4 56666666666653 11 1247899999873
Q ss_pred CchHHHHHHhhhhccccccCCC-----CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccc
Q 001971 727 EWCAVVKKLLHILLDGTVSLGE-----HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVH 801 (988)
Q Consensus 727 g~~aVVk~LL~~l~dg~vd~g~-----~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~ 801 (988)
+...+..++..+.+...+.+. .........|.||||+|+.+|+.++|++||++ |++...+....
T Consensus 93 -~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-------GAdv~~~~~~~--- 161 (743)
T TIGR00870 93 -YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-------GASVPARACGD--- 161 (743)
T ss_pred -cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-------CCCCCcCcCCc---
Confidence 344455555544332211000 00011123589999999999999999999999 66321100000
Q ss_pred cccccCCc-cCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcC-----C----HHHH
Q 001971 802 KGFLFRPD-VIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRG-----H----YSYI 871 (988)
Q Consensus 802 ~~y~fdpN-~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rG-----h----~evv 871 (988)
.+..... .....|.||||+||+ .|+.+++++|+++ +||+|++|..|+||||+|+..+ + ..+.
T Consensus 162 -~~~~~~~~~~~~~g~tpL~~Aa~-~~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~ 233 (743)
T TIGR00870 162 -FFVKSQGVDSFYHGESPLNAAAC-LGSPSIVALLSED------PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMY 233 (743)
T ss_pred -hhhcCCCCCcccccccHHHHHHH-hCCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 0000000 112469999999999 9999999999999 9999999999999999999987 2 2344
Q ss_pred HHHHHhhhc
Q 001971 872 HLVQKKINK 880 (988)
Q Consensus 872 eLL~~k~ak 880 (988)
+++...+++
T Consensus 234 ~~l~~ll~~ 242 (743)
T TIGR00870 234 NFALSLLDK 242 (743)
T ss_pred HHHHHHHhc
Confidence 556555544
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-13 Score=157.16 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=103.1
Q ss_pred HHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc-----CCHHHHHHHhccCCCccccccCcccccc
Q 001971 722 FSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK-----NSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 722 ~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~-----g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
++...+..++|+.||+.+++.+. .+..|.||||.|+.. ++.++|++|+++ |+
T Consensus 44 l~~~~~~~~iv~~Ll~~Gadvn~---------~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-------Ga------- 100 (489)
T PHA02798 44 LQRDSPSTDIVKLFINLGANVNG---------LDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-------GA------- 100 (489)
T ss_pred HhCCCCCHHHHHHHHHCCCCCCC---------CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-------CC-------
Confidence 34455589999999997654221 234588999999864 678999999999 88
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCC---CHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCC---HHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDG---SEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH---YSY 870 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G---~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh---~ev 870 (988)
++|.+|..|+||||+|+. .+ +.+++++|+++ ||+++++|..|.||||+|+..|+ .++
T Consensus 101 ----------diN~~d~~G~TpLh~a~~-~~~~~~~~iv~~Ll~~------Gadvn~~d~~g~tpL~~a~~~~~~~~~~v 163 (489)
T PHA02798 101 ----------DINKKNSDGETPLYCLLS-NGYINNLEILLFMIEN------GADTTLLDKDGFTMLQVYLQSNHHIDIEI 163 (489)
T ss_pred ----------CCCCCCCCcCcHHHHHHH-cCCcChHHHHHHHHHc------CCCccccCCCCCcHHHHHHHcCCcchHHH
Confidence 899999999999999998 54 78999999999 99999999999999999999998 999
Q ss_pred HHHHHHhhhcC
Q 001971 871 IHLVQKKINKR 881 (988)
Q Consensus 871 veLL~~k~ak~ 881 (988)
+++|.+++++.
T Consensus 164 v~~Ll~~gadi 174 (489)
T PHA02798 164 IKLLLEKGVDI 174 (489)
T ss_pred HHHHHHhCCCc
Confidence 99999998864
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=120.36 Aligned_cols=89 Identities=25% Similarity=0.280 Sum_probs=77.3
Q ss_pred HHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccc
Q 001971 720 IEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDG 799 (988)
Q Consensus 720 L~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~ 799 (988)
||+|+++++.++++.|++...+ + +. |.||||+|+..|+.+++++|+++ |+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~--~----------~~-~~~~l~~A~~~~~~~~~~~Ll~~-------g~---------- 50 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGAD--I----------NL-GNTALHYAAENGNLEIVKLLLEN-------GA---------- 50 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTST--T----------TS-SSBHHHHHHHTTTHHHHHHHHHT-------TT----------
T ss_pred CHHHHHcCCHHHHHHHHHCcCC--C----------CC-CCCHHHHHHHcCCHHHHHHHHHh-------cc----------
Confidence 7999999999999999994321 1 11 67999999999999999999999 77
Q ss_pred cccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC
Q 001971 800 VHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD 852 (988)
Q Consensus 800 s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD 852 (988)
++|.+|..|+||||+|+. .|+.+++++|+++ |++++.+|
T Consensus 51 -------~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~------g~~~~~~n 89 (89)
T PF12796_consen 51 -------DINSQDKNGNTALHYAAE-NGNLEIVKLLLEH------GADVNIRN 89 (89)
T ss_dssp -------CTT-BSTTSSBHHHHHHH-TTHHHHHHHHHHT------TT-TTSS-
T ss_pred -------cccccCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcC
Confidence 889999999999999999 9999999999999 99999886
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-13 Score=134.11 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=84.7
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC----HH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS----ED 830 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~----~e 830 (988)
+..|.|+||+|++.|+.++|++|+..... ...|+ ++|.+|..|.||||+|+. .|+ .+
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~-~~~ga-----------------~in~~d~~g~T~Lh~A~~-~g~~~~~~~ 78 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRG-DCHAA-----------------ALNATDDAGQMCIHIAAE-KHEAQLAAE 78 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhcc-chhhh-----------------hhhccCCCCCcHHHHHHH-cCChHHHHH
Confidence 34588999999999999999998754100 00133 778999999999999999 888 58
Q ss_pred HHHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hhc
Q 001971 831 VLDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKK-INK 880 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k-~ak 880 (988)
++++|+++ |+++|.+|. .|.||||+|+..++.+++++|..+ +++
T Consensus 79 ii~~Ll~~------gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~ 124 (169)
T PHA02741 79 IIDHLIEL------GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID 124 (169)
T ss_pred HHHHHHHc------CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 99999999 999999995 999999999999999999999864 544
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-13 Score=141.00 Aligned_cols=124 Identities=23% Similarity=0.126 Sum_probs=99.6
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
++-+||++|+.+|+.++|++||+.+++.. + ..+...++|.+|++.|..+||++||.. +.
T Consensus 159 ~GfTpLiWAaa~G~i~vV~fLL~~GAdp~--------~-lgk~resALsLAt~ggytdiV~lLL~r-------~v----- 217 (296)
T KOG0502|consen 159 FGFTPLIWAAAKGHIPVVQFLLNSGADPD--------A-LGKYRESALSLATRGGYTDIVELLLTR-------EV----- 217 (296)
T ss_pred cCchHhHHHHhcCchHHHHHHHHcCCChh--------h-hhhhhhhhHhHHhcCChHHHHHHHHhc-------CC-----
Confidence 35678888888888888888888554321 1 122233888888888888888888888 44
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..|.+|.|||-+|+. .|+.++|+.|++. ||+++..|+.|.++++.|...|+. +|+.+
T Consensus 218 ------------dVNvyDwNGgTpLlyAvr-gnhvkcve~Ll~s------GAd~t~e~dsGy~~mdlAValGyr-~Vqqv 277 (296)
T KOG0502|consen 218 ------------DVNVYDWNGGTPLLYAVR-GNHVKCVESLLNS------GADVTQEDDSGYWIMDLAVALGYR-IVQQV 277 (296)
T ss_pred ------------CcceeccCCCceeeeeec-CChHHHHHHHHhc------CCCcccccccCCcHHHHHHHhhhH-HHHHH
Confidence 789999999999999999 9999999999999 999999999999999999999988 55655
Q ss_pred HHhhh
Q 001971 875 QKKIN 879 (988)
Q Consensus 875 ~~k~a 879 (988)
+++-+
T Consensus 278 ie~h~ 282 (296)
T KOG0502|consen 278 IEKHA 282 (296)
T ss_pred HHHHH
Confidence 55433
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=153.50 Aligned_cols=125 Identities=11% Similarity=-0.029 Sum_probs=75.5
Q ss_pred HHHHHHHcC---chHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCC----HHHHHHHhccCCCccccccCc
Q 001971 719 LIEFSMDHE---WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNS----RPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 719 lL~~Ave~g---~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~----~eiVelLL~~~p~~~~~Ga~~ 791 (988)
+|+.=.+.+ +.++|+.||+++++.+. ...|.||||+|+..++ .++|++||.+ |++.
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~----------k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-------Ga~~ 408 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCMLDNGATMDK----------TTDNNYPLHDYFVNNNNIVDVNVVRFIVEN-------NGHM 408 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHHHCCCCCCc----------CCCCCcHHHHHHHHcCCcchHHHHHHHHHc-------CCCc
Confidence 676666655 69999999997664321 1358899999998875 8999999998 5410
Q ss_pred cccccccccccccccCCccCCCCCChHHHH--HHhhCC---------CHHHHHHhhcCCCCCccccccccCCCCCCCHHH
Q 001971 792 ENKALVDGVHKGFLFRPDVIGPAGLTPIHI--AAGKDG---------SEDVLDALTDDPGMVGIEAWKNARDSSGSTPED 860 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~~d~~G~TPLHi--AA~~~G---------~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh 860 (988)
++|.+|..|.||||. +|...+ ..+++++|+++ ||++|++|..|.||||
T Consensus 409 ---------------dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~------GADINakD~~G~TPLh 467 (672)
T PHA02730 409 ---------------AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY------MDDIDMIDNENKTLLY 467 (672)
T ss_pred ---------------cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc------ccchhccCCCCCCHHH
Confidence 345555555555552 221011 11345555555 5555555555555555
Q ss_pred HHHHcCCHHHHHHHHHhhhcC
Q 001971 861 YARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 861 ~A~~rGh~evveLL~~k~ak~ 881 (988)
+|+..++.+++++|++++++.
T Consensus 468 ~Aa~~~~~eive~LI~~GAdI 488 (672)
T PHA02730 468 YAVDVNNIQFARRLLEYGASV 488 (672)
T ss_pred HHHHhCCHHHHHHHHHCCCCC
Confidence 555555555555555555543
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-13 Score=140.69 Aligned_cols=124 Identities=22% Similarity=0.219 Sum_probs=111.7
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
-.++.+++...+.+++..|.+..++. -+..|.|||.+|+++|++++|++||++ |+
T Consensus 130 ~s~~slsVhql~L~~~~~~~~n~VN~-----------~De~GfTpLiWAaa~G~i~vV~fLL~~-------GA------- 184 (296)
T KOG0502|consen 130 WSPLSLSVHQLHLDVVDLLVNNKVNA-----------CDEFGFTPLIWAAAKGHIPVVQFLLNS-------GA------- 184 (296)
T ss_pred CChhhHHHHHHHHHHHHHHhhccccC-----------ccccCchHhHHHHhcCchHHHHHHHHc-------CC-------
Confidence 35889999999999988777744321 245699999999999999999999999 99
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
+|++.++...|+|.+|.. .|..+||++|++. +.|+|..|-+|-|||-||++.||.++++.|+.
T Consensus 185 ----------dp~~lgk~resALsLAt~-ggytdiV~lLL~r------~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~ 247 (296)
T KOG0502|consen 185 ----------DPDALGKYRESALSLATR-GGYTDIVELLLTR------EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN 247 (296)
T ss_pred ----------ChhhhhhhhhhhHhHHhc-CChHHHHHHHHhc------CCCcceeccCCCceeeeeecCChHHHHHHHHh
Confidence 899999999999999999 9999999999999 99999999999999999999999999999999
Q ss_pred hhhcCC
Q 001971 877 KINKRP 882 (988)
Q Consensus 877 k~ak~~ 882 (988)
.+++..
T Consensus 248 sGAd~t 253 (296)
T KOG0502|consen 248 SGADVT 253 (296)
T ss_pred cCCCcc
Confidence 998753
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=155.14 Aligned_cols=128 Identities=12% Similarity=0.004 Sum_probs=105.9
Q ss_pred cchHHHHHHHcCc----hHHHHHHhhhhccccccCCCCCchhhccCCCcHHHH---HHHcC---------CHHHHHHHhc
Q 001971 716 FKWLIEFSMDHEW----CAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHR---AVRKN---------SRPLVDLLLR 779 (988)
Q Consensus 716 ~k~lL~~Ave~g~----~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~---AVr~g---------~~eiVelLL~ 779 (988)
.++|||+|+..+. .++|+.||..+++..++ .++..|.||||. |...+ ..+++++||.
T Consensus 378 G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN-------~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs 450 (672)
T PHA02730 378 NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN-------HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK 450 (672)
T ss_pred CCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc-------ccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh
Confidence 4789999988875 79999999965421121 134458899994 44332 2357999999
Q ss_pred cCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCC-CCCCH
Q 001971 780 FVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDS-SGSTP 858 (988)
Q Consensus 780 ~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~-~G~TP 858 (988)
+ |+ ++|++|..|.||||+||. .++.+++++|+++ ||++|++|. .|.||
T Consensus 451 ~-------GA-----------------DINakD~~G~TPLh~Aa~-~~~~eive~LI~~------GAdIN~~d~~~g~Ta 499 (672)
T PHA02730 451 Y-------MD-----------------DIDMIDNENKTLLYYAVD-VNNIQFARRLLEY------GASVNTTSRSIINTA 499 (672)
T ss_pred c-------cc-----------------chhccCCCCCCHHHHHHH-hCCHHHHHHHHHC------CCCCCCCCCcCCcCH
Confidence 9 88 899999999999999999 8999999999999 999999997 59999
Q ss_pred HHHHHHc--CCHHHHHHHHHhhhcC
Q 001971 859 EDYARLR--GHYSYIHLVQKKINKR 881 (988)
Q Consensus 859 Lh~A~~r--Gh~evveLL~~k~ak~ 881 (988)
||+|+.+ |+.+++++|++++++.
T Consensus 500 L~~Aa~~~~~~~eIv~~LLs~ga~i 524 (672)
T PHA02730 500 IQKSSYRRENKTKLVDLLLSYHPTL 524 (672)
T ss_pred HHHHHHhhcCcHHHHHHHHHcCCCH
Confidence 9999984 7999999999988754
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=128.62 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=86.7
Q ss_pred ccchHHHHHHHcCchHH---HHHHhhhhccccccCCCCCchhhc-cCCCcHHHHHHHcCCHHHHHHHhc-cCCCcccccc
Q 001971 715 RFKWLIEFSMDHEWCAV---VKKLLHILLDGTVSLGEHPSLDLA-LTELGLLHRAVRKNSRPLVDLLLR-FVPLEVSDRL 789 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aV---Vk~LL~~l~dg~vd~g~~~~l~~~-l~G~TpLH~AVr~g~~eiVelLL~-~~p~~~~~Ga 789 (988)
.++++||+|+..|+.++ ++.|+...++.+. .+ ..|.||||+|+..++.+++++|+. . |+
T Consensus 56 ~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~---------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~-------ga 119 (166)
T PHA02743 56 HGRQCTHMVAWYDRANAVMKIELLVNMGADINA---------RELGTGNTLLHIAASTKNYELAEWLCRQL-------GV 119 (166)
T ss_pred CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC---------CCCCCCCcHHHHHHHhCCHHHHHHHHhcc-------CC
Confidence 35889999999987654 7888875443211 22 358899999999999999999995 6 66
Q ss_pred CccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCC
Q 001971 790 GSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGST 857 (988)
Q Consensus 790 ~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~T 857 (988)
+++.++..|.||||+|+. .|+.+++++|+++ ||+++.+|..|..
T Consensus 120 -----------------d~~~~d~~g~tpL~~A~~-~~~~~iv~~Ll~~------ga~~~~~~~~~~~ 163 (166)
T PHA02743 120 -----------------NLGAINYQHETAYHIAYK-MRDRRMMEILRAN------GAVCDDPLSIGLS 163 (166)
T ss_pred -----------------CccCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcccCCcc
Confidence 889999999999999999 8999999999999 9999999988864
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=113.35 Aligned_cols=120 Identities=29% Similarity=0.298 Sum_probs=105.2
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
..+++|++|+..++.++++.|++..... ...+..|.++||.|+..++.+++++|++. |+
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~---------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-------~~----- 64 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLENGADV---------NAKDNDGRTPLHLAAKNGHLEIVKLLLEK-------GA----- 64 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCC---------CccCCCCCcHHHHHHHcCCHHHHHHHHHc-------CC-----
Confidence 4578999999999999999999854321 12345678999999999999999999999 54
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
.++..+..|.||+|+|+. .++.+++++|++. +.+.+..|..|.||+++|...++.+++++|
T Consensus 65 ------------~~~~~~~~~~~~l~~a~~-~~~~~~~~~L~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 65 ------------DVNARDKDGNTPLHLAAR-NGNLDVVKLLLKH------GADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred ------------CccccCCCCCCHHHHHHH-cCcHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 567778899999999999 8999999999999 888999999999999999999999999887
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=122.78 Aligned_cols=126 Identities=25% Similarity=0.190 Sum_probs=110.0
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCC-----HHHHHHHhccCCCccccccC
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNS-----RPLVDLLLRFVPLEVSDRLG 790 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~-----~eiVelLL~~~p~~~~~Ga~ 790 (988)
...+++.++..+...+++.|+...++. ...+..|.|+||+|+..++ .+++++||+. |+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-------g~~ 136 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADV---------NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-------GAD 136 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCc---------ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-------CCC
Confidence 467999999999999998888854432 1245678999999999999 9999999999 540
Q ss_pred ccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 791 SENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 791 ~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
...++.+|..|.||||+|+. .|+.+++++|++. +++++.+|..|.||+++|+..++.++
T Consensus 137 --------------~~~~~~~~~~g~tpl~~A~~-~~~~~~~~~ll~~------~~~~~~~~~~g~t~l~~a~~~~~~~~ 195 (235)
T COG0666 137 --------------LDVNNLRDEDGNTPLHWAAL-NGDADIVELLLEA------GADPNSRNSYGVTALDPAAKNGRIEL 195 (235)
T ss_pred --------------CCCccccCCCCCchhHHHHH-cCchHHHHHHHhc------CCCCcccccCCCcchhhhcccchHHH
Confidence 11566779999999999999 9999999999999 99999999999999999999999999
Q ss_pred HHHHHHhh
Q 001971 871 IHLVQKKI 878 (988)
Q Consensus 871 veLL~~k~ 878 (988)
+.++..++
T Consensus 196 ~~~l~~~~ 203 (235)
T COG0666 196 VKLLLDKG 203 (235)
T ss_pred HHHHHhcC
Confidence 99999976
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-12 Score=143.05 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=144.0
Q ss_pred hHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCch
Q 001971 651 SEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWC 729 (988)
Q Consensus 651 sEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~ 729 (988)
++....+.++..++.+...+.+|.+++|+.| .+++-.|-+|+.+.......+ ..+++|||.|+..+|.
T Consensus 51 ~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d-----------~e~wtPlhaaascg~~ 119 (527)
T KOG0505|consen 51 GDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQD-----------NEGWTPLHAAASCGYL 119 (527)
T ss_pred ccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccc-----------cccCCcchhhcccccH
Confidence 4555666777777777666889999999999 588888999988886544443 2368899999999999
Q ss_pred HHHHHHhhhhcccc-ccC--CCCCchhhccCCCcHHHHHHHcCCH-----------HHH---HHHhccCCCccccccCcc
Q 001971 730 AVVKKLLHILLDGT-VSL--GEHPSLDLALTELGLLHRAVRKNSR-----------PLV---DLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 730 aVVk~LL~~l~dg~-vd~--g~~~~l~~~l~G~TpLH~AVr~g~~-----------eiV---elLL~~~p~~~~~Ga~~~ 792 (988)
+++++|++++++.. ++. +-..++-.+..+.+.|-.++.+-.+ .|+ ...+.. |.
T Consensus 120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~-------G~--- 189 (527)
T KOG0505|consen 120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNA-------GA--- 189 (527)
T ss_pred HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhc-------cc---
Confidence 99999999876532 221 1111111111122222222222111 111 122223 44
Q ss_pred ccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
..++.+..|.|+||+||. .|..++.++|+.+ |.+++++|.+|+||||.|+.-|+.++++
T Consensus 190 --------------~~d~~~~rG~T~lHvAaa-~Gy~e~~~lLl~a------g~~~~~~D~dgWtPlHAAA~Wg~~~~~e 248 (527)
T KOG0505|consen 190 --------------ELDARHARGATALHVAAA-NGYTEVAALLLQA------GYSVNIKDYDGWTPLHAAAHWGQEDACE 248 (527)
T ss_pred --------------cccccccccchHHHHHHh-hhHHHHHHHHHHh------ccCcccccccCCCcccHHHHhhhHhHHH
Confidence 667777789999999999 9999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhcCCC---CCceeeeeCCC
Q 001971 873 LVQKKINKRPN---GGHVVVDICGV 894 (988)
Q Consensus 873 LL~~k~ak~~~---~~~v~v~ip~~ 894 (988)
+|..++++... .++..+++..+
T Consensus 249 lL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 249 LLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred HHHHhhcccchhhhcCCCCccchhh
Confidence 99999987653 44555555443
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=136.87 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=84.4
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccC----CCCCChHHHHHHhhCCCHHHHHHh
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVI----GPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~----d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
++||.|++.|+.++|++||++ |+ ++|.+ +..|.||||+||. .|+.+++++|
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~-------GA-----------------diN~~~~~sd~~g~TpLh~Aa~-~~~~eivklL 89 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKL-------GA-----------------DPEAPFPLSENSKTNPLIYAID-CDNDDAAKLL 89 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHC-------CC-----------------CccccCcccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence 578889999999999999999 88 78876 4589999999999 9999999999
Q ss_pred hcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 836 TDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++ ||++|+++ ..|.||||+|+..|+.+++++|..++++..
T Consensus 90 L~~------GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin 131 (300)
T PHA02884 90 IRY------GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN 131 (300)
T ss_pred HHc------CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 999 99999975 689999999999999999999999998754
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-12 Score=126.28 Aligned_cols=139 Identities=20% Similarity=0.161 Sum_probs=111.3
Q ss_pred HHHHHHhHhhcccc-cccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcH
Q 001971 683 DFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGL 761 (988)
Q Consensus 683 ~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~Tp 761 (988)
+-|.++..||.-.. ....++.- .-+|||-|+.+|+.+||+.||...++.. .+...|+||
T Consensus 74 nrl~eV~~lL~e~an~vNtrD~D-----------~YTpLHRAaYn~h~div~~ll~~gAn~~---------a~T~~GWTP 133 (228)
T KOG0512|consen 74 NRLTEVQRLLSEKANHVNTRDED-----------EYTPLHRAAYNGHLDIVHELLLSGANKE---------AKTNEGWTP 133 (228)
T ss_pred ccHHHHHHHHHhccccccccccc-----------cccHHHHHHhcCchHHHHHHHHccCCcc---------cccccCccc
Confidence 55666666665543 12223311 3689999999999999999998655322 235569999
Q ss_pred HHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCC
Q 001971 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGM 841 (988)
Q Consensus 762 LH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~ 841 (988)
||.||+-++.+++.+||.+ |+ ++|+...+..||||+||...+....+.+|+.++
T Consensus 134 LhSAckWnN~~va~~LLqh-------ga-----------------DVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dr-- 187 (228)
T KOG0512|consen 134 LHSACKWNNFEVAGRLLQH-------GA-----------------DVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDR-- 187 (228)
T ss_pred hhhhhcccchhHHHHHHhc-------cC-----------------cccccccccchhhHHhhcccchHHHHHHHhhcc--
Confidence 9999999999999999999 88 899999999999999999777788899999886
Q ss_pred CccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 842 VGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 842 vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
+..+-.++..+.||+++|++.+-..+
T Consensus 188 ---yi~pg~~nn~eeta~~iARRT~~s~~ 213 (228)
T KOG0512|consen 188 ---YIHPGLKNNLEETAFDIARRTSMSHY 213 (228)
T ss_pred ---ccChhhhcCccchHHHHHHHhhhhHH
Confidence 66777788999999999998865443
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-12 Score=150.12 Aligned_cols=122 Identities=22% Similarity=0.150 Sum_probs=109.3
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.-++||.|+-+|+..++++||++-+ ...+ .+..|++|||+|+..|+.++|++||.. +.
T Consensus 49 gfTalhha~Lng~~~is~llle~ea--------~ldl-~d~kg~~plhlaaw~g~~e~vkmll~q-------~d------ 106 (854)
T KOG0507|consen 49 GFTLLHHAVLNGQNQISKLLLDYEA--------LLDL-CDTKGILPLHLAAWNGNLEIVKMLLLQ-------TD------ 106 (854)
T ss_pred chhHHHHHHhcCchHHHHHHhcchh--------hhhh-hhccCcceEEehhhcCcchHHHHHHhc-------cc------
Confidence 3589999999999999999998421 1122 235699999999999999999999999 43
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
.+|+....|.||||+||+ +||.+|+.+|+.+ ++++-.+|..+.|+|+.|++.|..+++++|.
T Consensus 107 -----------~~na~~~e~~tplhlaaq-hgh~dvv~~Ll~~------~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll 168 (854)
T KOG0507|consen 107 -----------ILNAVNIENETPLHLAAQ-HGHLEVVFYLLKK------NADPFIRNNSKETVLDLASRFGRAEVVQMLL 168 (854)
T ss_pred -----------CCCcccccCcCccchhhh-hcchHHHHHHHhc------CCCccccCcccccHHHHHHHhhhhHHHHHHh
Confidence 679999999999999999 9999999999999 9999999999999999999999999999998
Q ss_pred Hh
Q 001971 876 KK 877 (988)
Q Consensus 876 ~k 877 (988)
.+
T Consensus 169 ~~ 170 (854)
T KOG0507|consen 169 QK 170 (854)
T ss_pred hh
Confidence 87
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-12 Score=134.18 Aligned_cols=109 Identities=23% Similarity=0.212 Sum_probs=94.9
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
-.|||+|+..|+.++|..||..++..++ .+...-||||+|+..||.++|+.||++ .+
T Consensus 35 fsplhwaakegh~aivemll~rgarvn~---------tnmgddtplhlaaahghrdivqkll~~-------ka------- 91 (448)
T KOG0195|consen 35 FSPLHWAAKEGHVAIVEMLLSRGARVNS---------TNMGDDTPLHLAAAHGHRDIVQKLLSR-------KA------- 91 (448)
T ss_pred cchhhhhhhcccHHHHHHHHhccccccc---------ccCCCCcchhhhhhcccHHHHHHHHHH-------hc-------
Confidence 4699999999999999999996543221 123344999999999999999999998 55
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHc
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 865 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~r 865 (988)
++|+.+..|.||||+|+- .|...|.+-|+.. ||-++..++.|.|||+.|.-.
T Consensus 92 ----------dvnavnehgntplhyacf-wgydqiaedli~~------ga~v~icnk~g~tpldkakp~ 143 (448)
T KOG0195|consen 92 ----------DVNAVNEHGNTPLHYACF-WGYDQIAEDLISC------GAAVNICNKKGMTPLDKAKPM 143 (448)
T ss_pred ----------ccchhhccCCCchhhhhh-hcHHHHHHHHHhc------cceeeecccCCCCchhhhchH
Confidence 899999999999999999 9999999999999 999999999999999998543
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-12 Score=123.71 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=76.1
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCH---HH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSE---DV 831 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~---eV 831 (988)
+..|.||||+||+.|+ ++++|+.. +... .......+..|..|.||||+|+. .|+. ++
T Consensus 14 d~~g~tpLh~A~~~g~--~~~l~~~~-------~~~~----------~~~~~~~~~~d~~g~t~Lh~a~~-~~~~~~~e~ 73 (154)
T PHA02736 14 DIEGENILHYLCRNGG--VTDLLAFK-------NAIS----------DENRYLVLEYNRHGKQCVHIVSN-PDKADPQEK 73 (154)
T ss_pred CCCCCCHHHHHHHhCC--HHHHHHHH-------HHhc----------chhHHHHHHhcCCCCEEEEeecc-cCchhHHHH
Confidence 4568999999999998 45555433 1100 00001234568899999999999 8876 46
Q ss_pred HHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hhc
Q 001971 832 LDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKK-INK 880 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k-~ak 880 (988)
+++|+++ |++++.+|. .|.||||+|+..|+.+++++|..+ +++
T Consensus 74 v~~Ll~~------gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d 118 (154)
T PHA02736 74 LKLLMEW------GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN 118 (154)
T ss_pred HHHHHHc------CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 8899999 999999984 999999999999999999999864 443
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=142.05 Aligned_cols=147 Identities=14% Similarity=0.030 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhcc
Q 001971 677 TKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLAL 756 (988)
Q Consensus 677 lh~~am~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l 756 (988)
.+.++.+||.+-|....+. .+ -..++.|+..++.++|+.|++.+++.+.. + ...
T Consensus 319 v~ieiIK~LId~Ga~~~r~------~~-------------~n~~~~Aa~~gn~eIVelLIs~GADIN~k----D---~~g 372 (631)
T PHA02792 319 VYINVIKCMIDEGATLYRF------KH-------------INKYFQKFDNRDPKVVEYILKNGNVVVED----D---DNI 372 (631)
T ss_pred ccHHHHHHHHHCCCccccC------Cc-------------chHHHHHHHcCCHHHHHHHHHcCCchhhh----c---CCC
Confidence 4557778888877653221 11 22578899999999999999976543211 0 111
Q ss_pred CCCcHHHHHHHcCCHH---HHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 757 TELGLLHRAVRKNSRP---LVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~e---iVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+.||||.|+..+..+ ++++|+.+ |+ ++|.+|..|.||||+|+. .++.++++
T Consensus 373 ~~~TpLh~A~~n~~~~v~~IlklLIs~-------GA-----------------DIN~kD~~G~TPLh~Aa~-~~n~eive 427 (631)
T PHA02792 373 INIMPLFPTLSIHESDVLSILKLCKPY-------ID-----------------DINKIDKHGRSILYYCIE-SHSVSLVE 427 (631)
T ss_pred CChhHHHHHHHhccHhHHHHHHHHHhc-------CC-----------------ccccccccCcchHHHHHH-cCCHHHHH
Confidence 2469999988776654 58889999 88 899999999999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHH---cCC-------HHHHHHHHHhhhc
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARL---RGH-------YSYIHLVQKKINK 880 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~---rGh-------~evveLL~~k~ak 880 (988)
+|+++ ||+++++|..|.||||+|.. +++ .+++++|++++.+
T Consensus 428 lLLs~------GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~ 478 (631)
T PHA02792 428 WLIDN------GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT 478 (631)
T ss_pred HHHHC------CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999976 233 4556666666543
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-11 Score=137.19 Aligned_cols=113 Identities=25% Similarity=0.258 Sum_probs=86.1
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCcc--ccccCcccccccccc--------cccc---cc---CCccCC-CCCChH
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEV--SDRLGSENKALVDGV--------HKGF---LF---RPDVIG-PAGLTP 818 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~--~~Ga~~~~~~l~~~s--------~~~y---~f---dpN~~d-~~G~TP 818 (988)
-.|.|+|||||...+.++|+.||+.+.+.- .+.+ +-+|+...+ .... +| ++|++- ..|.|+
T Consensus 266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA--GYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTA 343 (452)
T KOG0514|consen 266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA--GYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTA 343 (452)
T ss_pred CCCCeeeeeeecccchHHHHHHhccCcccccccccc--cccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchh
Confidence 348899999999999999999999853310 0000 001111100 0000 13 567654 479999
Q ss_pred HHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 819 IHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 819 LHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
|++|++ +|..++|++||.. |||+|.+|.+|.|+|.+|++.||.+|+++|+..
T Consensus 344 LMLAVS-HGr~d~vk~LLac------gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 344 LMLAVS-HGRVDMVKALLAC------GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred hhhhhh-cCcHHHHHHHHHc------cCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence 999999 9999999999998 999999999999999999999999999999875
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=105.22 Aligned_cols=92 Identities=29% Similarity=0.356 Sum_probs=85.1
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
..|.||||+|++.++.+++++|++. |. +.+..+..|.||||+|+. .+..+++++|
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~-------~~-----------------~~~~~~~~g~~~l~~a~~-~~~~~~~~~l 59 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLEN-------GA-----------------DVNAKDNDGRTPLHLAAK-NGHLEIVKLL 59 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHc-------CC-----------------CCCccCCCCCcHHHHHHH-cCCHHHHHHH
Confidence 4588999999999999999999999 54 447888899999999999 8999999999
Q ss_pred hcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 836 TDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
+++ +++++..|..|.||+|+|...++.+++++|..++
T Consensus 60 l~~------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~ 96 (126)
T cd00204 60 LEK------GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96 (126)
T ss_pred HHc------CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 999 8899999999999999999999999999999986
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.2e-11 Score=140.81 Aligned_cols=136 Identities=14% Similarity=0.025 Sum_probs=106.4
Q ss_pred HH-HHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHH-cCCHHHHHHHhccCCCccccccCccc---
Q 001971 719 LI-EFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVR-KNSRPLVDLLLRFVPLEVSDRLGSEN--- 793 (988)
Q Consensus 719 lL-~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr-~g~~eiVelLL~~~p~~~~~Ga~~~~--- 793 (988)
++ ..|..+++.++|+.|+..+++.+. .+..+.||||+|+. .++.++|++||+. ||+...
T Consensus 74 ~~~~~~s~n~~lElvk~LI~~GAdvN~---------~~n~~~~~l~ya~~~~~~~eivk~Ll~~-------Gad~~~~~~ 137 (631)
T PHA02792 74 IFEYLCSDNIDIELLKLLISKGLEINS---------IKNGINIVEKYATTSNPNVDVFKLLLDK-------GIPTCSNIQ 137 (631)
T ss_pred HHHHHHHhcccHHHHHHHHHcCCCccc---------ccCCCCcceeEeecCCCChHHHHHHHHC-------CCCcccccc
Confidence 44 456788999999999997654321 23346799999966 6999999999999 553211
Q ss_pred ---cccccc-------------cccccccCCccCCCCCChHHHHHHhhCC-------CHHHHHHhhcCCCCCcccccccc
Q 001971 794 ---KALVDG-------------VHKGFLFRPDVIGPAGLTPIHIAAGKDG-------SEDVLDALTDDPGMVGIEAWKNA 850 (988)
Q Consensus 794 ---~~l~~~-------------s~~~y~fdpN~~d~~G~TPLHiAA~~~G-------~~eVV~lLL~~p~~vg~gAdvna 850 (988)
+++.+. ....|.+..|..|..|.||||+|+. .+ +.+|+++|+++ ||+++.
T Consensus 138 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~-~~s~~~~~~~~~v~k~Li~~------g~~~~~ 210 (631)
T PHA02792 138 YGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII-TRSQDGYATSLDVINYLISH------EKEMRY 210 (631)
T ss_pred cCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh-hCCcccccCCHHHHHHHHhC------CCCcCc
Confidence 222111 2223445678899999999999999 77 79999999999 999999
Q ss_pred CCCCCCCHHHHHHHcC--CHHHHHHHHHh
Q 001971 851 RDSSGSTPEDYARLRG--HYSYIHLVQKK 877 (988)
Q Consensus 851 rD~~G~TPLh~A~~rG--h~evveLL~~k 877 (988)
+|..|.||||+|+.+. ..+++++|..-
T Consensus 211 ~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 211 YTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred cCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 9999999999999999 78899988764
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-11 Score=98.55 Aligned_cols=54 Identities=33% Similarity=0.527 Sum_probs=46.3
Q ss_pred CChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 815 G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
|+||||.|+. .|+.+++++|+++ ++++|.+|.+|.||||+|+.+||.+++++|+
T Consensus 1 g~t~lh~A~~-~g~~~~~~~Ll~~------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAAR-SGNLEIVKLLLEH------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHH-TT-HHHHHHHHHT------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHH-hCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999 9999999999999 9999999999999999999999999999884
|
... |
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-11 Score=101.37 Aligned_cols=49 Identities=37% Similarity=0.483 Sum_probs=33.2
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHH
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYA 862 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A 862 (988)
++|.+|..|.||||+||. .|+.++|++|++. +++++++|..|+||||+|
T Consensus 8 ~~n~~d~~G~T~LH~A~~-~g~~~~v~~Ll~~------g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 8 DVNAQDKYGNTPLHWAAR-YGHSEVVRLLLQN------GADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -TT---TTS--HHHHHHH-HT-HHHHHHHHHC------T--TT---TTS--HHHH-
T ss_pred CCcCcCCCCCcHHHHHHH-cCcHHHHHHHHHC------cCCCCCCcCCCCCHHHhC
Confidence 889999999999999999 9999999999988 999999999999999998
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=140.01 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=83.6
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
+.||.|+..|+.++|++||+. |+ ++|.+|..|+||||+|+. .|+.++|++|+++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~-------Ga-----------------din~~d~~G~TpLh~Aa~-~g~~eiv~~LL~~- 137 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTG-------GA-----------------DPNCRDYDGRTPLHIACA-NGHVQVVRVLLEF- 137 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHC-------CC-----------------CCCCcCCCCCcHHHHHHH-CCCHHHHHHHHHC-
Confidence 468999999999999999999 77 889999999999999999 9999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
||+++.+|..|.||||+|+..|+.+++++|..+
T Consensus 138 -----Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 138 -----GADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170 (664)
T ss_pred -----CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence 999999999999999999999999999999988
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=135.03 Aligned_cols=194 Identities=18% Similarity=0.106 Sum_probs=141.9
Q ss_pred hhhhHHHHHHHHhhhcCc------chhhhh---cCCcccHHHHH---HHHHHHhHhhcccccccccCCCCCCCCCccccc
Q 001971 648 DVCSEIRMLESALEFNRT------DADVER---FGKIDTKNQAM---DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 648 ~iCsEI~~LE~~le~~a~------~~~~~~---~g~~~lh~~am---~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R 715 (988)
+.+..+..|+.+...+.. +.+.++ .|.+-+|.+.+ +..+++.-.|-+...+-+-+. -..--.+
T Consensus 109 ~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~-----~~~eeY~ 183 (782)
T KOG3676|consen 109 DSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDI-----YTSEEYY 183 (782)
T ss_pred cccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhh-----hhhHhhc
Confidence 455677777777766642 233322 46677777764 555666655544422111111 1122345
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhcccccc-CCCC---Cch-hh---------ccCCCcHHHHHHHcCCHHHHHHHhccC
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVS-LGEH---PSL-DL---------ALTELGLLHRAVRKNSRPLVDLLLRFV 781 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd-~g~~---~~l-~~---------~l~G~TpLH~AVr~g~~eiVelLL~~~ 781 (988)
+.++||.|+.+.+.++|++||+..+|.+.. .|.- .+- .. .--|..||-+|+--++.++|++|+++
T Consensus 184 GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~- 262 (782)
T KOG3676|consen 184 GQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH- 262 (782)
T ss_pred CcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-
Confidence 788999999999999999999988764321 1110 000 00 11266999999999999999999999
Q ss_pred CCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccc--cccCCCCCCCHH
Q 001971 782 PLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAW--KNARDSSGSTPE 859 (988)
Q Consensus 782 p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAd--vnarD~~G~TPL 859 (988)
|| |||++|..|.|.||+-+. .-..++-++++++ +|+ ...++..|.|||
T Consensus 263 ------gA-----------------d~~aqDS~GNTVLH~lVi-~~~~~My~~~L~~------ga~~l~~v~N~qgLTPL 312 (782)
T KOG3676|consen 263 ------GA-----------------DPNAQDSNGNTVLHMLVI-HFVTEMYDLALEL------GANALEHVRNNQGLTPL 312 (782)
T ss_pred ------CC-----------------CCCccccCCChHHHHHHH-HHHHHHHHHHHhc------CCCccccccccCCCChH
Confidence 88 999999999999999999 7778899999999 888 889999999999
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 001971 860 DYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 860 h~A~~rGh~evveLL~~k 877 (988)
.+|+..|+.++.+.+.++
T Consensus 313 tLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 313 TLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHHHhhhHHHHHHHHHh
Confidence 999999999999877776
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-10 Score=137.25 Aligned_cols=134 Identities=21% Similarity=0.210 Sum_probs=110.9
Q ss_pred hHHHHHHHcCchHHHHHHhhhhcccc----ccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGT----VSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~----vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
+=|.-|+..+..+.|..||+.-.-+. ......+...++..|.|+||-||.+|+.+++++|+++ .+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-------ea---- 73 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-------EA---- 73 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-------hh----
Confidence 45677899999999999998532211 0011112223466799999999999999999999999 33
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
..+..|..|.+|||+||. .|+.++|++|+.+ ++.+|+....|.||||.|+++||.+++++
T Consensus 74 -------------~ldl~d~kg~~plhlaaw-~g~~e~vkmll~q------~d~~na~~~e~~tplhlaaqhgh~dvv~~ 133 (854)
T KOG0507|consen 74 -------------LLDLCDTKGILPLHLAAW-NGNLEIVKMLLLQ------TDILNAVNIENETPLHLAAQHGHLEVVFY 133 (854)
T ss_pred -------------hhhhhhccCcceEEehhh-cCcchHHHHHHhc------ccCCCcccccCcCccchhhhhcchHHHHH
Confidence 456777889999999999 9999999999999 88999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 001971 874 VQKKINKRP 882 (988)
Q Consensus 874 L~~k~ak~~ 882 (988)
|.+++++..
T Consensus 134 Ll~~~adp~ 142 (854)
T KOG0507|consen 134 LLKKNADPF 142 (854)
T ss_pred HHhcCCCcc
Confidence 999998765
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-10 Score=93.08 Aligned_cols=54 Identities=31% Similarity=0.404 Sum_probs=45.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhh
Q 001971 758 ELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALT 836 (988)
Q Consensus 758 G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL 836 (988)
|+||||+|++.|+.+++++|++. |. ++|.+|..|+||||+|+. .|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~-------~~-----------------din~~d~~g~t~lh~A~~-~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEH-------GA-----------------DINAQDEDGRTPLHYAAK-NGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHT-------TS-----------------GTT-B-TTS--HHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHC-------CC-----------------CCCCCCCCCCCHHHHHHH-ccCHHHHHHHC
Confidence 57999999999999999999999 66 899999999999999999 99999999986
|
... |
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.8e-10 Score=102.45 Aligned_cols=89 Identities=26% Similarity=0.259 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCC
Q 001971 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGM 841 (988)
Q Consensus 762 LH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~ 841 (988)
..+++++|..+-|+..... |. ++|.. .+|+||||+||- .|..+++++|+.-
T Consensus 6 ~~W~vkNG~~DeVk~~v~~-------g~-----------------nVn~~-~ggR~plhyAAD-~GQl~ilefli~i--- 56 (117)
T KOG4214|consen 6 VAWNVKNGEIDEVKQSVNE-------GL-----------------NVNEI-YGGRTPLHYAAD-YGQLSILEFLISI--- 56 (117)
T ss_pred HhhhhccCcHHHHHHHHHc-------cc-----------------cHHHH-hCCcccchHhhh-cchHHHHHHHHHh---
Confidence 4688999999999877766 44 56643 489999999999 9999999999998
Q ss_pred CccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 842 VGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 842 vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
||+++.+|+.|.|||--|...||.+.|++|.++++++-
T Consensus 57 ---GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt 94 (117)
T KOG4214|consen 57 ---GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT 94 (117)
T ss_pred ---ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc
Confidence 99999999999999999999999999999999999875
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=106.56 Aligned_cols=96 Identities=30% Similarity=0.372 Sum_probs=87.7
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC-----HH
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS-----ED 830 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~-----~e 830 (988)
..+.+++|.|+..+..+++.+|+.. |+ +++.++..|.||||+|+. .|+ .+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~-------~~-----------------~~~~~~~~g~t~l~~a~~-~~~~~~~~~~ 125 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLLAS-------GA-----------------DVNAKDADGDTPLHLAAL-NGNPPEGNIE 125 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHHHc-------CC-----------------CcccccCCCCcHHHHHHh-cCCcccchHH
Confidence 3466999999999999999999998 66 789999999999999999 999 99
Q ss_pred HHHHhhcCCCCCcccc---ccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 831 VLDALTDDPGMVGIEA---WKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 831 VV~lLL~~p~~vg~gA---dvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++++|++. |+ ..+.+|..|.||||+|+..|+.+++++|.+.+++..
T Consensus 126 ~~~~ll~~------g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~ 174 (235)
T COG0666 126 VAKLLLEA------GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN 174 (235)
T ss_pred HHHHHHHc------CCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc
Confidence 99999999 88 667779999999999999999999999999977654
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=130.47 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=95.0
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
...|+.|+..|+.++|+.||+..++. + ..+..|.||||+|+..|+.++|++||++ |+
T Consensus 83 ~~~L~~aa~~G~~~~vk~LL~~Gadi----n-----~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-------Ga------- 139 (664)
T PTZ00322 83 TVELCQLAASGDAVGARILLTGGADP----N-----CRDYDGRTPLHIACANGHVQVVRVLLEF-------GA------- 139 (664)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCC----C-----CcCCCCCcHHHHHHHCCCHHHHHHHHHC-------CC-------
Confidence 34688999999999999999864432 1 1345688999999999999999999999 88
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCC-CccccccccCCCCCCCHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGM-VGIEAWKNARDSSGSTPEDYAR 863 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~-vg~gAdvnarD~~G~TPLh~A~ 863 (988)
++|.+|..|.||||+|+. .|+.+++++|+++... ...+|+.+..+.+|.+|+..+.
T Consensus 140 ----------dvn~~d~~G~TpLh~A~~-~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 140 ----------DPTLLDKDGKTPLELAEE-NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred ----------CCCCCCCCCCCHHHHHHH-CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 899999999999999999 9999999999987222 3458889999998988877665
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=124.27 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=98.8
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~ 798 (988)
+|.-|+-.|-.++|+..+.-+-|. -..+..|+|+||-|+-.||.+||+|||++ |+
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~Dp---------SqpNdEGITaLHNAiCaghyeIVkFLi~~-------ga--------- 607 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDP---------SQPNDEGITALHNAICAGHYEIVKFLIEF-------GA--------- 607 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCC---------CCCCccchhHHhhhhhcchhHHHHHHHhc-------CC---------
Confidence 566677888899999887643221 11244599999999999999999999999 88
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHHHH--cCCHHHHHHHH
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYARL--RGHYSYIHLVQ 875 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A~~--rGh~evveLL~ 875 (988)
++|+.|.+|+||||.||+ .++.-|++.|.++ ||-+-|.. .++.||.+-.-. .|+....++|.
T Consensus 608 --------nVNa~DSdGWTPLHCAAS-CNnv~~ckqLVe~------GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 608 --------NVNAADSDGWTPLHCAAS-CNNVPMCKQLVES------GAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred --------cccCccCCCCchhhhhhh-cCchHHHHHHHhc------cceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence 999999999999999999 8999999999999 88887765 689999986543 47888888886
Q ss_pred Hhhh
Q 001971 876 KKIN 879 (988)
Q Consensus 876 ~k~a 879 (988)
..-.
T Consensus 673 ~vqe 676 (752)
T KOG0515|consen 673 GVQE 676 (752)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=125.08 Aligned_cols=93 Identities=24% Similarity=0.184 Sum_probs=83.9
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 759 LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 759 ~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
..+|.-|+-.|-.++|+..+.. -. ||...+..|+||||-|.| .||.+||++|++.
T Consensus 551 LaLLLDaaLeGEldlVq~~i~e-------v~-----------------DpSqpNdEGITaLHNAiC-aghyeIVkFLi~~ 605 (752)
T KOG0515|consen 551 LALLLDAALEGELDLVQRIIYE-------VT-----------------DPSQPNDEGITALHNAIC-AGHYEIVKFLIEF 605 (752)
T ss_pred HHHHHhhhhcchHHHHHHHHHh-------hc-----------------CCCCCCccchhHHhhhhh-cchhHHHHHHHhc
Confidence 3567889999999999988876 22 677778899999999999 9999999999999
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 839 PGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 839 p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
||++|+.|.+||||||+|+..++..+++.|.+.++-..
T Consensus 606 ------ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaavf 643 (752)
T KOG0515|consen 606 ------GANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVF 643 (752)
T ss_pred ------CCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEE
Confidence 99999999999999999999999999999999988665
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=114.07 Aligned_cols=126 Identities=24% Similarity=0.241 Sum_probs=107.2
Q ss_pred cccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCc
Q 001971 712 PLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 712 qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~ 791 (988)
++...+.+|.-++..|.++-...||..... ++ -.+..||++|.-|+.+|+.++|++||+. |+
T Consensus 8 qld~~~~~Lle~i~Kndt~~a~~LLs~vr~--vn-------~~D~sGMs~LahAaykGnl~~v~lll~~-------ga-- 69 (396)
T KOG1710|consen 8 QLDAPKSPLLEAIDKNDTEAALALLSTVRQ--VN-------QRDPSGMSVLAHAAYKGNLTLVELLLEL-------GA-- 69 (396)
T ss_pred cccchhhHHHHHHccCcHHHHHHHHHHhhh--hh-------ccCCCcccHHHHHHhcCcHHHHHHHHHh-------CC--
Confidence 334457899999999999999999984221 11 1355799999999999999999999999 88
Q ss_pred cccccccccccccccCCcc-CCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 792 ENKALVDGVHKGFLFRPDV-IGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~-~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
|+|. ++..+.||||+||. .|+.+|..+|++. ||.....+.-|+|+-..|+.-||++.
T Consensus 70 ---------------DvN~~qhg~~YTpLmFAAL-SGn~dvcrlllda------Ga~~~~vNsvgrTAaqmAAFVG~H~C 127 (396)
T KOG1710|consen 70 ---------------DVNDKQHGTLYTPLMFAAL-SGNQDVCRLLLDA------GARMYLVNSVGRTAAQMAAFVGHHEC 127 (396)
T ss_pred ---------------CcCcccccccccHHHHHHH-cCCchHHHHHHhc------cCccccccchhhhHHHHHHHhcchHH
Confidence 6663 45678999999999 9999999999999 99999999999999999999999999
Q ss_pred HHHHHHh
Q 001971 871 IHLVQKK 877 (988)
Q Consensus 871 veLL~~k 877 (988)
|..+-.+
T Consensus 128 V~iINN~ 134 (396)
T KOG1710|consen 128 VAIINNH 134 (396)
T ss_pred HHHHhcc
Confidence 8876544
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=126.35 Aligned_cols=141 Identities=21% Similarity=0.135 Sum_probs=107.6
Q ss_pred cchHHHHHHHc---CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 716 FKWLIEFSMDH---EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 716 ~k~lL~~Ave~---g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
++++||.|.-+ ++.++++.||+..-+- + ++ .-......|.|+||.|+.+.+.++|++||+. ||+..
T Consensus 143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~l-i--nd-~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-------gADV~ 211 (782)
T KOG3676|consen 143 GETLLHKALLNLSDGHNELARVLLEIFPKL-I--ND-IYTSEEYYGQSALHIAIVNRDAELVRLLLAA-------GADVH 211 (782)
T ss_pred hhhHHHHHHhcCchhHHHHHHHHHHHhHHH-h--hh-hhhhHhhcCcchHHHHHHhccHHHHHHHHHc-------CCchh
Confidence 68999999763 4668999999853210 1 11 1111244588999999999999999999999 77532
Q ss_pred ccccccccccccccCCccC------------CCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHH
Q 001971 793 NKALVDGVHKGFLFRPDVI------------GPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPED 860 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~------------d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh 860 (988)
+...|-=|.++-. =..|..||-+||| .++.+|+++|+++ |||++++|..|+|-||
T Consensus 212 ------aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC-~nq~eivrlLl~~------gAd~~aqDS~GNTVLH 278 (782)
T KOG3676|consen 212 ------ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAAC-TNQPEIVRLLLAH------GADPNAQDSNGNTVLH 278 (782)
T ss_pred ------hHhhccccCcccccccccccCCcceeeeccCchHHHHH-cCCHHHHHHHHhc------CCCCCccccCCChHHH
Confidence 2222222333322 1358899999999 8999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhhc
Q 001971 861 YARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 861 ~A~~rGh~evveLL~~k~ak 880 (988)
.-...-..+.-.++..++++
T Consensus 279 ~lVi~~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 279 MLVIHFVTEMYDLALELGAN 298 (782)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99988778888888888877
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-09 Score=131.87 Aligned_cols=196 Identities=15% Similarity=0.099 Sum_probs=148.7
Q ss_pred eeeecCCCCCCCcceeecchhhhhHHHHHHHHhhhcCcchh-hhhcCCcccH-------HHHHHHHHHHhHhhccccccc
Q 001971 628 IEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDAD-VERFGKIDTK-------NQAMDFIHEIGWLFHRSQSKS 699 (988)
Q Consensus 628 IEVE~~Glss~ffP~LVad~~iCsEI~~LE~~le~~a~~~~-~~~~g~~~lh-------~~am~fL~EIGWLLqr~~~~~ 699 (988)
||.-+ .-+|.|+|+|.-+ ..+..+|.++...+..++ .+.++.+.+- ..+.+.|+-.|..-.+. .
T Consensus 783 iehrd---kkgf~plImaata--gh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehr---n 854 (2131)
T KOG4369|consen 783 IEHRD---KKGFVPLIMAATA--GHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHR---N 854 (2131)
T ss_pred ccccc---cccchhhhhhccc--CchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcccccc---c
Confidence 45444 3459999998755 677888888877665442 2333333332 24455565555431111 1
Q ss_pred ccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhc
Q 001971 700 RLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLR 779 (988)
Q Consensus 700 ~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~ 779 (988)
+.| -+||.+|...|++.+|+.||..+.+.+..+| ...|..||.+|..+||.+.+..||+
T Consensus 855 vsD--------------ytPlsla~Sggy~~iI~~llS~GseInSrtg-------SklgisPLmlatmngh~~at~~ll~ 913 (2131)
T KOG4369|consen 855 VSD--------------YTPLSLARSGGYTKIIHALLSSGSEINSRTG-------SKLGISPLMLATMNGHQAATLSLLQ 913 (2131)
T ss_pred hhh--------------cCchhhhcCcchHHHHHHHhhcccccccccc-------cccCcchhhhhhhccccHHHHHHhc
Confidence 222 4699999999999999999998766554433 2348899999999999999999999
Q ss_pred cCCCccccccCccccccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCH
Q 001971 780 FVPLEVSDRLGSENKALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTP 858 (988)
Q Consensus 780 ~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TP 858 (988)
. |. ++|+.- .+.+|+|-+|.- .|..+||.+||.+ .|++..|-.+|.||
T Consensus 914 ~-------gs-----------------diNaqIeTNrnTaltla~f-qgr~evv~lLLa~------~anvehRaktgltp 962 (2131)
T KOG4369|consen 914 P-------GS-----------------DINAQIETNRNTALTLALF-QGRPEVVFLLLAA------QANVEHRAKTGLTP 962 (2131)
T ss_pred c-------cc-----------------hhccccccccccceeeccc-cCcchHHHHHHHH------hhhhhhhcccCCcc
Confidence 8 66 566533 456799999988 9999999999999 99999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhhcCCC
Q 001971 859 EDYARLRGHYSYIHLVQKKINKRPN 883 (988)
Q Consensus 859 Lh~A~~rGh~evveLL~~k~ak~~~ 883 (988)
|..++..|..+|=++|+.++++..+
T Consensus 963 lme~AsgGyvdvg~~li~~gad~na 987 (2131)
T KOG4369|consen 963 LMEMASGGYVDVGNLLIAAGADTNA 987 (2131)
T ss_pred cchhhcCCccccchhhhhccccccc
Confidence 9999999999999999999998763
|
|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-09 Score=95.87 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=85.6
Q ss_pred HHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccc
Q 001971 720 IEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDG 799 (988)
Q Consensus 720 L~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~ 799 (988)
..+++.+|..+-|+....... + ......|.+|||+|+-.|..+++++|+.. |+
T Consensus 6 ~~W~vkNG~~DeVk~~v~~g~--n--------Vn~~~ggR~plhyAAD~GQl~ilefli~i-------GA---------- 58 (117)
T KOG4214|consen 6 VAWNVKNGEIDEVKQSVNEGL--N--------VNEIYGGRTPLHYAADYGQLSILEFLISI-------GA---------- 58 (117)
T ss_pred HhhhhccCcHHHHHHHHHccc--c--------HHHHhCCcccchHhhhcchHHHHHHHHHh-------cc----------
Confidence 356677887777776655221 1 11345789999999999999999999999 88
Q ss_pred cccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHH
Q 001971 800 VHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYAR 863 (988)
Q Consensus 800 s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~ 863 (988)
+++.+|+.|.|||.-|.. .||.++|++|+.. ||+...+.-+|.|.+..+-
T Consensus 59 -------~i~~kDKygITPLLsAvw-EGH~~cVklLL~~------GAdrt~~~PdG~~~~eate 108 (117)
T KOG4214|consen 59 -------NIQDKDKYGITPLLSAVW-EGHRDCVKLLLQN------GADRTIHAPDGTALIEATE 108 (117)
T ss_pred -------ccCCccccCCcHHHHHHH-HhhHHHHHHHHHc------CcccceeCCCchhHHhhcc
Confidence 899999999999999998 9999999999999 9999999999988776553
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-09 Score=120.98 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhh
Q 001971 757 TELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALT 836 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL 836 (988)
++.-.+.+|++.|+...++-+.-. |. |.+.+|.+.+|+||+||. +|+++|+++|+
T Consensus 505 ~~~i~~~~aa~~GD~~alrRf~l~-------g~-----------------D~~~~DyD~RTaLHvAAa-EG~v~v~kfl~ 559 (622)
T KOG0506|consen 505 DTVINVMYAAKNGDLSALRRFALQ-------GM-----------------DLETKDYDDRTALHVAAA-EGHVEVVKFLL 559 (622)
T ss_pred cchhhhhhhhhcCCHHHHHHHHHh-------cc-----------------cccccccccchhheeecc-cCceeHHHHHH
Confidence 355789999999999988766555 55 788999999999999999 99999999999
Q ss_pred cCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 837 DDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 837 ~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
+.. +.+++.+|.||+|||+.|...+|.+++++|++...
T Consensus 560 ~~~-----kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 560 NAC-----KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred HHH-----cCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 974 88999999999999999999999999999998764
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-08 Score=117.07 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=91.9
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
-.+.-|++.+..+=|+.||.. |+ .||..+.+|.|+||-++. ..+.+||++|+++
T Consensus 42 a~~l~A~~~~d~~ev~~ll~~-------ga-----------------~~~~~n~DglTalhq~~i-d~~~e~v~~l~e~- 95 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLNR-------GA-----------------SPNLCNVDGLTALHQACI-DDNLEMVKFLVEN- 95 (527)
T ss_pred HHHHhccccccHHHHHHHhcc-------CC-----------------CccccCCccchhHHHHHh-cccHHHHHHHHHh-
Confidence 346678999999999999999 76 679999999999999999 9999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCCCCCceeeeeCCCCC
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVP 896 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~~~~~v~v~ip~~~~ 896 (988)
||++|+.|.+|+||||-|+--||..++++|+..+++.. ...-..++|..+.
T Consensus 96 -----ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~-avNsdg~~P~dl~ 146 (527)
T KOG0505|consen 96 -----GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLL-AVNSDGNMPYDLA 146 (527)
T ss_pred -----cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhh-hccCCCCCccccc
Confidence 99999999999999999999999999999999998765 3333445555443
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-08 Score=86.02 Aligned_cols=45 Identities=31% Similarity=0.337 Sum_probs=30.4
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIA 822 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiA 822 (988)
.+..|.||||+||++|+.++|++||++ |+ +++++|..|+||||+|
T Consensus 12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~-------g~-----------------d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 12 QDKYGNTPLHWAARYGHSEVVRLLLQN-------GA-----------------DPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TTS--HHHHHHHHT-HHHHHHHHHC-------T-------------------TT---TTS--HHHH-
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHC-------cC-----------------CCCCCcCCCCCHHHhC
Confidence 466799999999999999999999988 77 8999999999999998
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-08 Score=121.23 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=150.3
Q ss_pred eeeecCCCCCCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCC
Q 001971 628 IEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDP 706 (988)
Q Consensus 628 IEVE~~Glss~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~ 706 (988)
+|||.+-=+..=.++-+++-. ..-+..|.++..++....-+-...+++-.+. =++.+.|-.||..+.-...+.-.
T Consensus 814 a~veaQsdrtkdt~lSlacsg--gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgS-- 889 (2131)
T KOG4369|consen 814 ADVEAQSDRTKDTMLSLACSG--GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGS-- 889 (2131)
T ss_pred hhhhhhcccccCceEEEecCC--CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccccc--
Confidence 555654234445667677644 3445678888888877655555667777777 48999999999887422222211
Q ss_pred CCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccc
Q 001971 707 NTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVS 786 (988)
Q Consensus 707 ~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~ 786 (988)
. ..-.||++|.-+||.+.++.||+.+-+.+..+. ....|.|-+|+-.|..++|.+||.+..+.+
T Consensus 890 -----k--lgisPLmlatmngh~~at~~ll~~gsdiNaqIe--------TNrnTaltla~fqgr~evv~lLLa~~anve- 953 (2131)
T KOG4369|consen 890 -----K--LGISPLMLATMNGHQAATLSLLQPGSDINAQIE--------TNRNTALTLALFQGRPEVVFLLLAAQANVE- 953 (2131)
T ss_pred -----c--cCcchhhhhhhccccHHHHHHhcccchhccccc--------cccccceeeccccCcchHHHHHHHHhhhhh-
Confidence 1 134599999999999999999986544332211 113367777777777777777776622210
Q ss_pred cccCcccccccccccccccc----------CCcc--CCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCC
Q 001971 787 DRLGSENKALVDGVHKGFLF----------RPDV--IGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSS 854 (988)
Q Consensus 787 ~Ga~~~~~~l~~~s~~~y~f----------dpN~--~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~ 854 (988)
.-+-.+-+||...++.+|+- |.|+ .-....|+|-|+|. .||...|.+|+.. .|-+..+++.
T Consensus 954 hRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~-kGh~kfv~~lln~------~atv~v~Nkk 1026 (2131)
T KOG4369|consen 954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPAN-KGHTKFVPKLLNG------DATVRVPNKK 1026 (2131)
T ss_pred hhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecC-CCchhhhHHhhCC------ccceecccCC
Confidence 01111123444445555521 2221 11234578888888 8888888888887 7888889999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 855 GSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 855 G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|.|||++|+..|+...+++|..+.++..
T Consensus 1027 G~T~Lwla~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen 1027 GCTVLWLASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred CCcccchhccCCccccchHHhhcccChh
Confidence 9999999999999999999999988643
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-08 Score=110.29 Aligned_cols=85 Identities=34% Similarity=0.405 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCC-CCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 761 LLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGP-AGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 761 pLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
-||..||.++.+..--||.. || ++|..++ .|.||||+||. .|...-+++|.=+
T Consensus 136 QLhasvRt~nlet~LRll~l-------GA-----------------~~N~~hpekg~TpLHvAAk-~Gq~~Q~ElL~vY- 189 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSL-------GA-----------------QANFFHPEKGNTPLHVAAK-AGQILQAELLAVY- 189 (669)
T ss_pred HHHHHhhcccHHHHHHHHHc-------cc-----------------ccCCCCcccCCchhHHHHh-ccchhhhhHHhhc-
Confidence 59999999999998888888 88 6777665 48999999999 9999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
|||+++.|.+|+||++||+..||.++.+-|.+
T Consensus 190 -----GAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 190 -----GADPGAQDSSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred -----cCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999886554
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-07 Score=96.69 Aligned_cols=93 Identities=23% Similarity=0.194 Sum_probs=83.5
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 759 LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 759 ~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
..+|.-|+.+|+.+-...||.-. - .+|..|+.|+|+|..||- .|+.++|++|++.
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~v-------r-----------------~vn~~D~sGMs~LahAay-kGnl~~v~lll~~ 67 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTV-------R-----------------QVNQRDPSGMSVLAHAAY-KGNLTLVELLLEL 67 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHh-------h-----------------hhhccCCCcccHHHHHHh-cCcHHHHHHHHHh
Confidence 47899999999999999888761 1 579999999999999999 9999999999999
Q ss_pred CCCCccccccccC-CCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 839 PGMVGIEAWKNAR-DSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 839 p~~vg~gAdvnar-D~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|||+|.. +..+.||||+|+..|+.+|..+|...+++..
T Consensus 68 ------gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~ 106 (396)
T KOG1710|consen 68 ------GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMY 106 (396)
T ss_pred ------CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccc
Confidence 9999975 6899999999999999999999999887643
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-06 Score=101.39 Aligned_cols=94 Identities=26% Similarity=0.153 Sum_probs=79.3
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
.-|..|+...+...+-+||.+ |... ..+-...+.+|+||||+||. .|++.+.++|+-+
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAh-------g~~~-------------e~~~t~~~~~grt~LHLa~~-~gnVvl~QLLiWy- 683 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAH-------GSRE-------------EVNETCGEGDGRTALHLAAR-KGNVVLAQLLIWY- 683 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------cCch-------------hhhccccCCCCcchhhhhhh-hcchhHHHHHHHh-
Confidence 457889998999999999988 4310 00112345678999999999 8999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
|+|+-++|..|.|+|.||+..|.-+++.+|+..+--
T Consensus 684 -----g~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 684 -----GVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCP 719 (749)
T ss_pred -----CccceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence 999999999999999999999999999999998753
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-06 Score=64.73 Aligned_cols=33 Identities=42% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCC
Q 001971 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDS 853 (988)
Q Consensus 814 ~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~ 853 (988)
+|+||||+||. .|+.+++++|+++ ||+++++|+
T Consensus 1 dG~TpLh~A~~-~~~~~~v~~Ll~~------ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQ-RGHPDIVKLLLKH------GADINARDN 33 (33)
T ss_dssp TSBBHHHHHHH-TTCHHHHHHHHHT------TSCTTCBCT
T ss_pred CcccHHHHHHH-HHHHHHHHHHHHC------cCCCCCCCC
Confidence 58999999999 9999999999999 999999884
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-06 Score=96.43 Aligned_cols=90 Identities=24% Similarity=0.230 Sum_probs=75.1
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
-|||+++...+.+-.+.+|.... +. .++.+|..|+||||+|+. -|+.+.+++|+.+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~-----~~-----------------~id~~D~~g~TpLhlAV~-Lg~~~~a~~Ll~a- 77 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKV-----SL-----------------VIDRRDPPGRTPLHLAVR-LGHVEAARILLSA- 77 (560)
T ss_pred cccchhhhccchhhHHHHHhhhh-----hc-----------------eeccccCCCCccHHHHHH-hcCHHHHHHHHhc-
Confidence 35999998877665554444311 22 578899999999999999 8999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
||++..+|+.|+||||.|+.+|+..++..|+.+.
T Consensus 78 -----~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 78 -----GADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL 111 (560)
T ss_pred -----CCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999999999999999999888777664
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.5e-05 Score=95.50 Aligned_cols=284 Identities=18% Similarity=0.205 Sum_probs=157.3
Q ss_pred CCceeEEeceeeEecCCceEEEEEeeccCCCCceEEEEecCcccceehhcccccccc-CccccccceEEee--ecCCCcc
Q 001971 546 NYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVD-GFKELDELQCVNF--SCSIPAV 622 (988)
Q Consensus 546 ~~p~i~~V~P~a~~ag~~~~~~v~G~NL~~p~~rllc~~~GkYl~~e~~~~~~~~~~-~~~~~~ei~~~~~--~~~~P~~ 622 (988)
..-.|.-++|=+.-....+.+.|.|+-=....--.-|.|++.-...|... +|.- .+-..++-..++| .|. .
T Consensus 403 qlf~I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq---~GVLrC~~P~h~~G~V~l~V~c~---~ 476 (975)
T KOG0520|consen 403 QLFTITDFSPEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQ---EGVLRCYAPPHEPGVVNLQVTCR---I 476 (975)
T ss_pred ceeeeeccCcccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhh---cceeeeecCccCCCeEEEEEEec---c
Confidence 33458889999999999999999998333344556777776554444432 2310 0001122222222 222 1
Q ss_pred CCCceeeeecCCCCCCCcceeecch--h---hhhHHHHHHHHhh---hc-CcchhhhhcC-Ccc--cHHHHHHHHHHHhH
Q 001971 623 TGRGFIEIEDHGFSSTFFPFIVAEE--D---VCSEIRMLESALE---FN-RTDADVERFG-KID--TKNQAMDFIHEIGW 690 (988)
Q Consensus 623 ~G~~fIEVE~~Glss~ffP~LVad~--~---iCsEI~~LE~~le---~~-a~~~~~~~~g-~~~--lh~~am~fL~EIGW 690 (988)
.|-..-|+-.-.|+...-+.+=... + .-+....||.... .. .+..-++..+ .-. +-.-++.+++++..
T Consensus 477 ~~~~~se~ref~~~~~~~~~~d~~s~~d~~~~~sl~~rl~~~~~r~~~~~~s~~~~~n~~~~~~~~l~skv~~l~~~~~~ 556 (975)
T KOG0520|consen 477 SGLACSEVREFAYLVQPSQQIDKLSWEDFLFQMSLLHRLETMLNRKQSILSSKPSTENTSDAESGNLASKVVHLLNEWAY 556 (975)
T ss_pred cceeeeeehheeecccCcccccccccccchhhhHHHHHHHHHHHHhHhHhhccCCccccccccchhHHHHHHHHHHHHHH
Confidence 2222222221111111111111110 1 1112222222222 00 0000011111 111 12222466666666
Q ss_pred -hhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcC
Q 001971 691 -LFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKN 769 (988)
Q Consensus 691 -LLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g 769 (988)
++..+.. .. ..+.-.|..++||++++.++.-++.++++- ....+.+.+.++..-+|+ |..+
T Consensus 557 r~~~~~~~-----~~----~~~~~~r~~lllhL~a~~lyawLie~~~e~--------~~~~~~eld~d~qgV~hf-ca~l 618 (975)
T KOG0520|consen 557 RLLKSISE-----NL----SSSVNFRDMLLLHLLAELLYAWLIEKVIEW--------AGSGDLELDRDGQGVIHF-CAAL 618 (975)
T ss_pred HHHhhHhh-----hc----cccCCCcchHHHHHHHHHhHHHHHHHHhcc--------cccCchhhcccCCChhhH-hhhc
Confidence 5554421 11 123334668899999999999888888873 011222345556778888 5556
Q ss_pred CHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccc
Q 001971 770 SRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKN 849 (988)
Q Consensus 770 ~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvn 849 (988)
+.+.+-+|+.+. |. .+|++|..|+||||+|+. .|++.++..|.+--...|.--|++
T Consensus 619 g~ewA~ll~~~~------~~-----------------ai~i~D~~G~tpL~wAa~-~G~e~l~a~l~~lga~~~~~tdps 674 (975)
T KOG0520|consen 619 GYEWAFLPISAD------GV-----------------AIDIRDRNGWTPLHWAAF-RGREKLVASLIELGADPGAVTDPS 674 (975)
T ss_pred CCceeEEEEeec------cc-----------------ccccccCCCCcccchHhh-cCHHHHHHHHHHhccccccccCCC
Confidence 667666676662 44 689999999999999999 999999999987511112222344
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 850 ARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 850 arD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
..+-.|.|+-+.|...||..+.-+|.++
T Consensus 675 ~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 675 PETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CCCCCCCchhhhhhcccccchHHHHhhh
Confidence 4455799999999999999999998887
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=93.21 Aligned_cols=97 Identities=27% Similarity=0.327 Sum_probs=85.7
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
..+-.++||+|++.|+.+||+++|++.|.. -.|+.|..|.|+||-||+ .++..|..+
T Consensus 896 ~~~~~sllh~a~~tg~~eivkyildh~p~e----------------------lld~~de~get~lhkaa~-~~~r~vc~~ 952 (1004)
T KOG0782|consen 896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSE----------------------LLDMADETGETALHKAAC-QRNRAVCQL 952 (1004)
T ss_pred CcchhhHHHHHHhcCChHHHHHHHhcCCHH----------------------HHHHHhhhhhHHHHHHHH-hcchHHHHH
Confidence 334458999999999999999999996542 346677899999999999 899999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
|.+. ||..-..|..|.||-.-|.+.|..+.+.+|..+.+-
T Consensus 953 lvda------gasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~y 992 (1004)
T KOG0782|consen 953 LVDA------GASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY 992 (1004)
T ss_pred HHhc------chhheecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence 9999 999999999999999999999999999999887553
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-06 Score=62.08 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=26.1
Q ss_pred CCChHHHHHHhhCCCHHHHHHhhcCCCCCcccccccc
Q 001971 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNA 850 (988)
Q Consensus 814 ~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvna 850 (988)
+|+||||+||. .|+.++|++|+++ |||+|+
T Consensus 1 ~G~T~Lh~A~~-~g~~e~v~~Ll~~------gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAAS-NGNIEIVKYLLEH------GADVNA 30 (30)
T ss_pred CCCCHHHHHHH-hCCHHHHHHHHHc------CCCCCC
Confidence 48899999999 8999999999998 888874
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=95.06 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~ 798 (988)
-...|+++|....|++.|+.......+++..+. -|.++||.|+.+.+.+++++||+.
T Consensus 28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-----lGr~al~iai~nenle~~eLLl~~------------------ 84 (822)
T KOG3609|consen 28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-----LGRLALHIAIDNENLELQELLLDT------------------ 84 (822)
T ss_pred HHHHHHHcCChHHHHHHHHhccccccchhccCh-----HhhhceecccccccHHHHHHHhcC------------------
Confidence 445789999999999999865443344444333 388999999999999999999998
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCc----cccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVG----IEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg----~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
.... .-+|-+|.. .|..++|++|+.++...+ .+....+.-.-+.||+-+|+..+|+||+++|
T Consensus 85 --------~~~~-----gdALL~aI~-~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~L 150 (822)
T KOG3609|consen 85 --------SSEE-----GDALLLAIA-VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCL 150 (822)
T ss_pred --------cccc-----chHHHHHHH-HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHH
Confidence 2222 237888988 899999999999853221 1122234445688999999999999999999
Q ss_pred HHhhhcCC
Q 001971 875 QKKINKRP 882 (988)
Q Consensus 875 ~~k~ak~~ 882 (988)
++|++..+
T Consensus 151 l~kg~~i~ 158 (822)
T KOG3609|consen 151 LTRGHCIP 158 (822)
T ss_pred HHcCCCCC
Confidence 99987765
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.6e-05 Score=98.27 Aligned_cols=87 Identities=29% Similarity=0.324 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhh
Q 001971 757 TELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALT 836 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL 836 (988)
.|-++||.|+..+...++++||.+ |+ ++|..|..|+||||.+.. .|+...+.+|+
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~-------ga-----------------~vn~~d~~g~~plh~~~~-~g~~~~~~~ll 709 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQN-------GA-----------------DVNALDSKGRTPLHHATA-SGHTSIACLLL 709 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhc-------CC-----------------cchhhhccCCCcchhhhh-hcccchhhhhc
Confidence 467999999999999999999999 88 899999999999999999 99999999999
Q ss_pred cCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 837 DDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 837 ~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++ +|+.++.|.+|.+|+++|....|.+++-++
T Consensus 710 ~~------~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 710 KR------GADPNAFDPDGKLPLDIAMEAANADIVLLL 741 (785)
T ss_pred cc------cccccccCccCcchhhHHhhhccccHHHHH
Confidence 98 999999999999999999888666665444
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.7e-05 Score=95.40 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=62.2
Q ss_pred CccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 808 pN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
.|+.|..|+|+||+|++ .|..++++.|+.+ |++++.+| +.|+||||-|..+||++.+-+|.++++
T Consensus 45 anikD~~GR~alH~~~S-~~k~~~l~wLlqh------Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~ 110 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVS-ENKNSFLRWLLQH------GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR 110 (1267)
T ss_pred hhHHHhhccceeeeeec-cchhHHHHHHHhc------CceeeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence 68999999999999999 9999999999999 99999999 479999999999999999999999976
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=75.73 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIE-AWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~g-AdvnarD~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
++|++|..|+|||+.||+ .|+.++|.+|+.+ | ||+.+.|..|.+.+.+|-+.|+.+++++|.+...
T Consensus 4 ~in~rD~fgWTalmcaa~-eg~~eavsyllgr------g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAM-EGSNEAVSYLLGR------GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CccchhhhcchHHHHHhh-hcchhHHHHHhcc------CcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence 789999999999999999 9999999999999 8 9999999999999999999999999999998743
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.2e-05 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcc
Q 001971 757 TELGLLHRAVRKNSRPLVDLLLRF 780 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~eiVelLL~~ 780 (988)
.|+||||+|+.+|+.++|++||++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ 24 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKH 24 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHC
Confidence 378999999999999999999999
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.4e-05 Score=91.36 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=73.0
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCC-CCChHHHHHHhhCCCHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGP-AGLTPIHIAAGKDGSEDVL 832 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV 832 (988)
++..|.|+||.|+..|..++++.||.+ |+ +++.+|. .|.||||-|.- .|+.|++
T Consensus 48 kD~~GR~alH~~~S~~k~~~l~wLlqh-------Gi-----------------dv~vqD~ESG~taLHRaiy-yG~idca 102 (1267)
T KOG0783|consen 48 KDRYGRTALHIAVSENKNSFLRWLLQH-------GI-----------------DVFVQDEESGYTALHRAIY-YGNIDCA 102 (1267)
T ss_pred HHhhccceeeeeeccchhHHHHHHHhc-------Cc-----------------eeeeccccccchHhhHhhh-hchHHHH
Confidence 355689999999999999999999999 87 7888885 69999999999 9999999
Q ss_pred HHhhcCCCCCccccccccCCCCCCCHHHHHHH
Q 001971 833 DALTDDPGMVGIEAWKNARDSSGSTPEDYARL 864 (988)
Q Consensus 833 ~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~ 864 (988)
-+||.+ |+....+|++|..||..-++
T Consensus 103 ~lLL~~------g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 103 SLLLSK------GRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred HHHHhc------CCceEEecccCCCHHHHHhh
Confidence 999999 99999999999999987665
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcc
Q 001971 758 ELGLLHRAVRKNSRPLVDLLLRF 780 (988)
Q Consensus 758 G~TpLH~AVr~g~~eiVelLL~~ 780 (988)
|+||||+|++.|+.++|++||++
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~ 24 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEH 24 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHc
Confidence 78999999999999999999999
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0003 Score=81.43 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=77.0
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
.+-+.+-||-++..|+.++.-.||..+++.+.- ....|.||||.|++.|..--+|+|+-| ||
T Consensus 130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~--------hpekg~TpLHvAAk~Gq~~Q~ElL~vY-------GA--- 191 (669)
T KOG0818|consen 130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFF--------HPEKGNTPLHVAAKAGQILQAELLAVY-------GA--- 191 (669)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcccccCCC--------CcccCCchhHHHHhccchhhhhHHhhc-------cC---
Confidence 344677899999999999999999876654421 122477999999999999999999999 99
Q ss_pred ccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhc
Q 001971 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD 837 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~ 837 (988)
||++.|..|+||+-+|-. .||.++.+-|++
T Consensus 192 --------------D~~a~d~~GmtP~~~AR~-~gH~~laeRl~e 221 (669)
T KOG0818|consen 192 --------------DPGAQDSSGMTPVDYARQ-GGHHELAERLVE 221 (669)
T ss_pred --------------CCCCCCCCCCcHHHHHHh-cCchHHHHHHHH
Confidence 899999999999999988 899888766654
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=83.99 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred hHHHHHHHc-CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 718 WLIEFSMDH-EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 718 ~lL~~Ave~-g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.+||.++-. ++-.+.+.|+.. +...++. .+..|.||||.||+-|+...++.||.+ |+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~-~~~~id~-------~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-------~A------- 79 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAK-VSLVIDR-------RDPPGRTPLHLAVRLGHVEAARILLSA-------GA------- 79 (560)
T ss_pred cccchhhhccchhhHHHHHhhh-hhceecc-------ccCCCCccHHHHHHhcCHHHHHHHHhc-------CC-------
Confidence 468888544 566666666654 3333332 345578999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
++-.++..|+||||.|++ .|+.+++..++.+
T Consensus 80 ----------dv~~kN~~gWs~L~EAv~-~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 80 ----------DVSIKNNEGWSPLHEAVS-TGNEQIITEVLRH 110 (560)
T ss_pred ----------CccccccccccHHHHHHH-cCCHHHHHHHHHH
Confidence 788899999999999999 8999888777665
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00032 Score=82.41 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=69.2
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~ 798 (988)
-|.-|+.......+-+||.++-...++ .+. ..-+|.|+||+|++.|++.+.++|+=| |+
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~----~t~-~~~~grt~LHLa~~~gnVvl~QLLiWy-------g~--------- 685 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVN----ETC-GEGDGRTALHLAARKGNVVLAQLLIWY-------GV--------- 685 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhh----ccc-cCCCCcchhhhhhhhcchhHHHHHHHh-------Cc---------
Confidence 345565555577777777754322222 111 233578999999999999999999977 77
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
|+-++|..|+|||.+|-. .|..+++++|+.+
T Consensus 686 --------dv~~rda~g~t~l~yar~-a~sqec~d~llq~ 716 (749)
T KOG0705|consen 686 --------DVMARDAHGRTALFYARQ-AGSQECIDVLLQY 716 (749)
T ss_pred --------cceecccCCchhhhhHhh-cccHHHHHHHHHc
Confidence 888999999999999999 9999999999998
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00033 Score=87.10 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=75.6
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
...||++||+++..+..-+++.|+++. |- .++.-|.+|.--+|++|. ++.+..-+
T Consensus 571 ~~r~~lllhL~a~~lyawLie~~~e~~------~~-----------------~~~eld~d~qgV~hfca~--lg~ewA~l 625 (975)
T KOG0520|consen 571 NFRDMLLLHLLAELLYAWLIEKVIEWA------GS-----------------GDLELDRDGQGVIHFCAA--LGYEWAFL 625 (975)
T ss_pred CCcchHHHHHHHHHhHHHHHHHHhccc------cc-----------------CchhhcccCCChhhHhhh--cCCceeEE
Confidence 456899999999999999999999871 11 334555566667788766 55666555
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
|...- +..++.+|..|+||||+|+.+||..++..|.+.++..
T Consensus 626 l~~~~-----~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~ 667 (975)
T KOG0520|consen 626 PISAD-----GVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADP 667 (975)
T ss_pred EEeec-----ccccccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence 55431 7788999999999999999999999999999877654
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00027 Score=81.57 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=71.3
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~ 798 (988)
.++||+..|..+.++.++-.+.+-. -++.+..|+||.|+..|++++|++||+.. +.
T Consensus 509 ~~~~aa~~GD~~alrRf~l~g~D~~---------~~DyD~RTaLHvAAaEG~v~v~kfl~~~~------kv--------- 564 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQGMDLE---------TKDYDDRTALHVAAAEGHVEVVKFLLNAC------KV--------- 564 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHhccccc---------ccccccchhheeecccCceeHHHHHHHHH------cC---------
Confidence 5788999998888877665333211 13556779999999999999999999873 22
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
+|+.+|..|+|||--|-. -+|.+|+++|-+.
T Consensus 565 --------~~~~kDRw~rtPlDdA~~-F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 565 --------DPDPKDRWGRTPLDDAKH-FKHKEVVKLLEEA 595 (622)
T ss_pred --------CCChhhccCCCcchHhHh-cCcHHHHHHHHHH
Confidence 899999999999999999 8999999999876
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.001 Score=77.90 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+.-++|++..|-||+||. .|+.+||++++++ |..--.++.|++|.|.||-|+..++..|.++|...++...
T Consensus 891 ~ll~~~~~~~sllh~a~~-tg~~eivkyildh----~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ 961 (1004)
T KOG0782|consen 891 SLLIQGPDHCSLLHYAAK-TGNGEIVKYILDH----GPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR 961 (1004)
T ss_pred ceEeeCcchhhHHHHHHh-cCChHHHHHHHhc----CCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe
Confidence 455788899999999999 9999999999998 2234467889999999999999999999999999988654
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0034 Score=71.23 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=53.0
Q ss_pred hHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 817 TPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 817 TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
--|..|+. .|..+.|+.|++. |.++|++|.+..+||.+|+..||..++++|.+.|+
T Consensus 38 ~elceacR-~GD~d~v~~LVet------gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA 93 (516)
T KOG0511|consen 38 GELCEACR-AGDVDRVRYLVET------GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA 93 (516)
T ss_pred HHHHHHhh-cccHHHHHHHHHh------CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence 35888888 9999999999998 99999999999999999999999999999999987
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0045 Score=76.14 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=67.7
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
++.+|+.|+++.+.+++..||+.-. ..| .+|..|+..|..++||+||.+. + ++..+..
T Consensus 62 Gr~al~iai~nenle~~eLLl~~~~---------------~~g-dALL~aI~~~~v~~VE~ll~~~-~----~~~~~~~- 119 (822)
T KOG3609|consen 62 GRLALHIAIDNENLELQELLLDTSS---------------EEG-DALLLAIAVGSVPLVELLLVHF-V----DAPYLER- 119 (822)
T ss_pred hhhceecccccccHHHHHHHhcCcc---------------ccc-hHHHHHHHHHHHHHHHHHHhcc-c----ccchhcc-
Confidence 3669999999999999999998421 114 7888999999999999999982 1 2211000
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
..+..+..|. -+.|||.+||. .++.||+++|++.
T Consensus 120 --~~d~~~~~ft------~ditPliLAAh-~NnyEil~~Ll~k 153 (822)
T KOG3609|consen 120 --SGDANSPHFT------PDITPLMLAAH-LNNFEILQCLLTR 153 (822)
T ss_pred --ccccCcccCC------CCccHHHHHHH-hcchHHHHHHHHc
Confidence 1222233344 45799999999 8999999999986
|
|
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0064 Score=71.06 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=66.4
Q ss_pred HHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCcccccccc
Q 001971 771 RPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNA 850 (988)
Q Consensus 771 ~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvna 850 (988)
...+++|.++ ++ ..+|.|.|...+.---|+||+||. .|...+|.+||+. ++|+.+
T Consensus 404 p~~ie~lken-------~l-----------sgnf~~~pe~~~~ltsT~LH~aa~-qg~~k~v~~~Lee------g~Dp~~ 458 (591)
T KOG2505|consen 404 PDSIEALKEN-------LL-----------SGNFDVTPEANDYLTSTFLHYAAA-QGARKCVKYFLEE------GCDPST 458 (591)
T ss_pred hhHHHHHHhc-------CC-----------cccccccccccccccchHHHHHHh-cchHHHHHHHHHh------cCCchh
Confidence 4567888877 33 356778888888888899999999 9999999999999 999999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 851 RDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 851 rD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
+|..|.||+.++. +.+|-..++..-
T Consensus 459 kd~~Grtpy~ls~---nkdVk~~F~a~~ 483 (591)
T KOG2505|consen 459 KDGAGRTPYSLSA---NKDVKSIFIARR 483 (591)
T ss_pred cccCCCCcccccc---cHHHHHHHHHHH
Confidence 9999999999987 666666555543
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=66.24 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 759 LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 759 ~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
..-|+.|+|.|+.+.|+.|++. |. ++|+.|.....||.+|.. .||++||++|+++
T Consensus 37 f~elceacR~GD~d~v~~LVet-------gv-----------------nVN~vD~fD~spL~lAsL-cGHe~vvklLLen 91 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVET-------GV-----------------NVNAVDRFDSSPLYLASL-CGHEDVVKLLLEN 91 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHh-------CC-----------------CcchhhcccccHHHHHHH-cCcHHHHHHHHHc
Confidence 3569999999999999999998 77 899999999999999999 9999999999999
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHcC
Q 001971 839 PGMVGIEAWKNARDSSGSTPEDYARLRG 866 (988)
Q Consensus 839 p~~vg~gAdvnarD~~G~TPLh~A~~rG 866 (988)
||--.--.-+|. ==||++.+.
T Consensus 92 ------GAiC~rdtf~G~-RC~YgaLnd 112 (516)
T KOG0511|consen 92 ------GAICSRDTFDGD-RCHYGALND 112 (516)
T ss_pred ------CCcccccccCcc-hhhhhhhhH
Confidence 764332223454 345666643
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.006 Score=76.16 Aligned_cols=89 Identities=25% Similarity=0.253 Sum_probs=73.3
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
.....++||.|+..+|..++..||+.+++ ++ . .+..|.+|||.+...|+...+.+|++. |+
T Consensus 653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn------~-~d~~g~~plh~~~~~g~~~~~~~ll~~-------~a--- 713 (785)
T KOG0521|consen 653 LCIGCSLLHVAVGTGDSGAVELLLQNGAD--VN------A-LDSKGRTPLHHATASGHTSIACLLLKR-------GA--- 713 (785)
T ss_pred hhcccchhhhhhccchHHHHHHHHhcCCc--ch------h-hhccCCCcchhhhhhcccchhhhhccc-------cc---
Confidence 34457899999999999999999996543 11 1 344578999999999999999999998 88
Q ss_pred ccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
++++.+++|.+||++|... .+.+++-+|
T Consensus 714 --------------~~~a~~~~~~~~l~~a~~~-~~~d~~~l~ 741 (785)
T KOG0521|consen 714 --------------DPNAFDPDGKLPLDIAMEA-ANADIVLLL 741 (785)
T ss_pred --------------cccccCccCcchhhHHhhh-ccccHHHHH
Confidence 8999999999999999884 666665544
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.038 Score=37.00 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=16.9
Q ss_pred CChHHHHHHhhCCCHHHHHHhhcC
Q 001971 815 GLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 815 G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
|.||||+|+. .|+.+++++|+++
T Consensus 2 ~~~~l~~~~~-~~~~~~~~~ll~~ 24 (30)
T smart00248 2 GRTPLHLAAE-NGNLEVVKLLLDK 24 (30)
T ss_pred CCCHHHHHHH-cCCHHHHHHHHHc
Confidence 5677777777 6777777777766
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.13 Score=54.47 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+..|+|+|+.|+..|+.+.|.+||.. |+. .|-+.|..|++++.+|-. .|+.++|.
T Consensus 8 rD~fgWTalmcaa~eg~~eavsyllgr-------g~a----------------~vgv~d~ssldaaqlaek-~g~~~fvh 63 (223)
T KOG2384|consen 8 RDAFGWTALMCAAMEGSNEAVSYLLGR-------GVA----------------FVGVTDESSLDAAQLAEK-GGAQAFVH 63 (223)
T ss_pred hhhhcchHHHHHhhhcchhHHHHHhcc-------Ccc----------------cccccccccchHHHHHHh-cChHHHHH
Confidence 356699999999999999999999999 732 788999999999999998 99999999
Q ss_pred HhhcC
Q 001971 834 ALTDD 838 (988)
Q Consensus 834 lLL~~ 838 (988)
.|.+.
T Consensus 64 ~lfe~ 68 (223)
T KOG2384|consen 64 SLFEN 68 (223)
T ss_pred HHHHH
Confidence 99886
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.22 Score=33.13 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 854 SGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 854 ~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
.|.||+|+|+..++.+++++|++.+.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 478999999999999999999987653
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.14 Score=60.36 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=57.0
Q ss_pred hHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCC
Q 001971 729 CAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRP 808 (988)
Q Consensus 729 ~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdp 808 (988)
.+.|..|.+.++.++.+.... ..+..--|+||+|+..|..++|..||+. |+ ||
T Consensus 404 p~~ie~lken~lsgnf~~~pe---~~~~ltsT~LH~aa~qg~~k~v~~~Lee-------g~-----------------Dp 456 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPE---ANDYLTSTFLHYAAAQGARKCVKYFLEE-------GC-----------------DP 456 (591)
T ss_pred hhHHHHHHhcCCccccccccc---ccccccchHHHHHHhcchHHHHHHHHHh-------cC-----------------Cc
Confidence 445667777776666443211 1122234999999999999999999999 76 89
Q ss_pred ccCCCCCChHHHHHHhhCCCHHHHHHhhc
Q 001971 809 DVIGPAGLTPIHIAAGKDGSEDVLDALTD 837 (988)
Q Consensus 809 N~~d~~G~TPLHiAA~~~G~~eVV~lLL~ 837 (988)
-+.|..|+||..+++- .||-..++.
T Consensus 457 ~~kd~~Grtpy~ls~n----kdVk~~F~a 481 (591)
T KOG2505|consen 457 STKDGAGRTPYSLSAN----KDVKSIFIA 481 (591)
T ss_pred hhcccCCCCccccccc----HHHHHHHHH
Confidence 9999999999999875 466555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 988 | ||||
| 1ul4_A | 94 | Solution Structure Of The Dna-Binding Domain Of Squ | 2e-26 | ||
| 1wj0_A | 60 | Solution Structure Of The Dna-Binding Domain Of Squ | 3e-24 | ||
| 1ul5_A | 88 | Solution Structure Of The Dna-binding Domain Of Squ | 1e-17 |
| >pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 | Back alignment and structure |
|
| >pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60 | Back alignment and structure |
|
| >pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-40
Identities = 57/91 (62%), Positives = 70/91 (76%)
Query: 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQ 201
GSS +CQV+ C AD+ AK YHRRHKVCE+H+KAS + + QRFCQQCSRFH LQ
Sbjct: 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62
Query: 202 EFDEGKRSCRRRLAGHNKRRRKTNPDAVANG 232
EFDE KRSCRRRLAGHN+RRRK++ ++ +
Sbjct: 63 EFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93
|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 6e-38
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDE 205
S A CQV DC AD+S K YH+RH+VC + AS ++ +R+CQQC +FH+L +FDE
Sbjct: 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61
Query: 206 GKRSCRRRLAGHNKRRRKTNPDAVANG 232
GKRSCRR+L HN RR++ D
Sbjct: 62 GKRSCRRKLERHNNRRKRKPVDKGGVA 88
|
| >1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 8e-33
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
S CQV++CGADLS KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 8e-07
Identities = 88/608 (14%), Positives = 170/608 (27%), Gaps = 182/608 (29%)
Query: 435 DRIVFKLFGKEPNDFPL-VLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEE- 492
D V K+ D P +L + +D + S + +R + L + E ++
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQEEMVQKF 82
Query: 493 ----LCCDLTFSLSRLLDLSND-SFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNY 547
L + F +S + S T ++ R + +YN V R Y
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQPY 137
Query: 548 SKI----LSVKP------------------IAVPASERAQ-FFVKGI---NLGRSAT--- 578
K+ L ++P + V S + Q I NL +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 579 ------RLLCAVEGKYM------------VQEATHEL---------------LDDVDGFK 605
+LL ++ + + EL L +V +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---Q 254
Query: 606 ELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRT 665
N SC I +T R F ++ D + I + ++
Sbjct: 255 NAKAWNAFNLSCKI-LLTTR-FKQVTD-----------FLSAATTTHISLDHHSMTLTPD 301
Query: 666 DADVERFGK-IDTKNQ--------------AM------DFIHEI-GWL------FHRSQS 697
+ K +D + Q ++ D + W
Sbjct: 302 EV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 698 KSRLGHLDPNTDLFPLRR-FKWLIEFSMDHEWCAVVK---KLLHILLDGTVSLGEHPSLD 753
S L L+P R+ F L F LL ++ + +
Sbjct: 361 SS-LNVLEPAE----YRKMFDRLSVFPPS------AHIPTILLSLIWFDVIK--SDVMVV 407
Query: 754 LA-LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFR---PD 809
+ L + L+ + ++++ + + L ++ EN+ +H+ + P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLEL-------KVKLENEY---ALHRSIVDHYNIPK 457
Query: 810 VIGPAGLTPI--------HIA-----AGKDGSEDVLDALTDDPGMVG--IEAWKNARDSS 854
L P HI + + D + I A ++S
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 855 GSTPEDYARLRGHYSYI--------HLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQ-N 905
GS +L+ + YI LV ++ P ++ +++ +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI----CSKYTDLLRIALM 573
Query: 906 NESTASFE 913
E A FE
Sbjct: 574 AEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 8e-06
Identities = 79/548 (14%), Positives = 166/548 (30%), Gaps = 171/548 (31%)
Query: 206 GKRSCRRRLAGH---NKRRRKTNPDAV-----ANGSSPNNDQTSGYLLISLLRILSNMHS 257
GK + +A + + + + N +SP +L LL + +
Sbjct: 162 GK-TW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWT 214
Query: 258 SRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE--HQDML----NERTSAGNSEVV 311
SRSD ++ L H ++ + LL+ +++ L N + N++
Sbjct: 215 SRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCLLVLLNVQ----NAKAW 259
Query: 312 QAFLANGQGCP----TPFRQQLNATVSEMPQQVSLPHDARGAEDQDGN--VAQ-IKMNNF 364
AF C T F+Q + + +SL H + + + + +
Sbjct: 260 NAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 365 DLNDVYIDSDDGTEDVERSPVPANL-GTSSIDCPS----WVRQDSQQSSPPQTSGNSDSA 419
DL E + +P ++ S D + W + + T+ S
Sbjct: 317 DLPR---------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSL 363
Query: 420 SAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPL---VLRAQILDWLSHSPSDMESYIRPGC 476
+ P+ R +F P + +L ++ W SD+ +
Sbjct: 364 NVLEPA--------EYRKMFDRLSVFPPSAHIPTILL--SLI-WFDVIKSDVMV-VVNKL 411
Query: 477 VILTIYLRQAEAAWEELCCDLTFSL-SRLLDL----SNDSFWTSGWVYARVQHQIAFI-- 529
++ +Q + T S+ S L+L N+ H+ +
Sbjct: 412 HKYSLVEKQP--------KESTISIPSIYLELKVKLENE----------YALHRS-IVDH 452
Query: 530 YNGQVVLDTS--LPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGK 587
YN D+ +PP + Y +G
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF---------------YSH------IG------------- 478
Query: 588 YMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIE--IEDHGFSSTFFPFIVA 645
+ ++ E + + F+ + ++F F+E I + I+
Sbjct: 479 HHLKNI--EHPERMTLFRMV----FLDFR----------FLEQKIRHDSTAWNASGSIL- 521
Query: 646 EEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKS--RLGH 703
+ +++ + + N D ER N +DF+ +I S+ R+
Sbjct: 522 --NTLQQLKFYKPYICDN--DPKYERL-----VNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 704 LDPNTDLF 711
+ + +F
Sbjct: 573 MAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 68/478 (14%), Positives = 128/478 (26%), Gaps = 170/478 (35%)
Query: 585 EGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHG---FSSTFFP 641
E +Y ++ D F + NF C +++D S
Sbjct: 13 EHQYQYKDILSVFEDA---FVD-------NFDCK----------DVQDMPKSILSKEEID 52
Query: 642 FIVAEEDVCSEIRMLESALEFNRTDADVERF-GKIDTKNQAMDFIHEIGWLFHRSQSKSR 700
I+ +D S L L + + V++F ++ N +L +++ R
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRIN--------YKFLMSPIKTEQR 103
Query: 701 LGHLDP--NTDLF-----------------PLRRFK-------WLIEFSMDHEWCAVV-- 732
P T ++ + R + L+E + +
Sbjct: 104 ----QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGV 158
Query: 733 ----KKLL----------HILLDGTV---SLGEHPSLDLALTELGLLHRAVRKNSRPLVD 775
K + +D + +L S + L L L + N D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 776 LLLRFVPLEVSD------RLGSE---NKALV--DGVH-----KGFLFR------------ 807
+ L + RL L+ V F
Sbjct: 219 HSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 808 PDVIGPAGLTPI---HIAAG--KDGSEDVL-------------DALTDDP---GMVG--- 843
D + A T I H + D + +L + LT +P ++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 844 ------IEAWK--------NARDSSGS--TPEDYARLRGHYSYIHLVQK--KI------- 878
+ WK +SS + P +Y R + + + I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPPSAHIPTILLSL 394
Query: 879 ---NKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKL 933
+ + VVV+ ++ +KQ EST S ++ N H+ +
Sbjct: 395 IWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 35/162 (21%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPA---GLTP 818
LH A+ + + LV LL+ EN A V G F+ P G P
Sbjct: 105 LHIAIERRNMTLVTLLV-------------ENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 819 IHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878
+ +AA ++ L + A +ARDS G+T + K
Sbjct: 152 LSLAACT-NQLAIVKFLLQNSWQ---PADISARDSVGNTVLHALVEVADN---TVDNTKF 204
Query: 879 NKRPNGGH--VVVDICGVVPDSNIYQKQNNESTASFEIGQTP 918
+ + + I N + G TP
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEI---TNRK-------GLTP 236
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/133 (25%), Positives = 45/133 (33%), Gaps = 21/133 (15%)
Query: 730 AVVKKLLHILLDGTVSLGEHPSLDLALTELGL--LHRAVRKNSRPLVDLLLRFVPLEVSD 787
A + LL I D + G LH A+ K S V LL+
Sbjct: 60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV--------- 110
Query: 788 RLGSENKALVDGVHKGFLFRPDVIGPA--GLTPIHIAAGKDGSEDVLDALTDDPGMVGIE 845
EN A V G F+ G P+ +AA DV+ L ++P
Sbjct: 111 ----ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA-CTKQWDVVTYLLENPHQ---P 162
Query: 846 AWKNARDSSGSTP 858
A A DS G+T
Sbjct: 163 ASLEATDSLGNTV 175
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 25/130 (19%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
L+ +VR L LL + +D + +G L +
Sbjct: 248 LYLSVRAAMVLLTKELL-----QKTDVFLIQACPYHNGTT------VLPDRVVWLDFVPA 296
Query: 822 AAGKDGSEDVLDALTDDPGMVGIE--AWKNARDSSGSTPEDYARLRGHYSYIH-LVQK-- 876
AA ++VL L E ++G+ + + + +
Sbjct: 297 AA-DPSKQEVLQLL--------QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347
Query: 877 KINKRPNGGH 886
+ R
Sbjct: 348 PVRTRSRSRA 357
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 37/163 (22%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPA---GLTP 818
LH A+ + + V+LL+ E A V +G F+P G G P
Sbjct: 97 LHIAIERRCKHYVELLV-------------EKGADVHAQARGRFFQPKDEGGYFYFGELP 143
Query: 819 IHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878
+ +AA ++ LT++ +A +DS G+T L H +
Sbjct: 144 LSLAA-CTNQPHIVHYLTENGHK---QADLRRQDSRGNTV-----L--HALVAIADNTRE 192
Query: 879 NKRPNGGHVVVDIC---GVVPDSNIYQKQNNESTASFEIGQTP 918
N + + + + PD+N+ NN+ G +P
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNND-------GLSP 228
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 31/109 (28%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
LH A K +V LLL A D + +
Sbjct: 144 LHAAAWKGYADIVQLLL-------------AKGARTDLRNI-----------EKKLAFDM 179
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870
A +L G +A + ++ ++ + L H+ +
Sbjct: 180 ATNA-ACASLLKKK------QGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
LH A ++ + + L +N+ V+G+ K G T ++
Sbjct: 77 LHEAAKRGNLSWLRECL-------------DNRVGVNGLDKA-----------GSTALYW 112
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867
A G +D+++ L P N ++ G T A +G+
Sbjct: 113 AC-HGGHKDIVEMLFTQPN-----IELNQQNKLGDTALHAAAWKGY 152
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 31/122 (25%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
LH A + LV LL +++A V+ K G +P+H
Sbjct: 315 LHVASHYGNIKLVKFLL-------------QHQADVNAKTKL-----------GYSPLHQ 350
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881
AA + G D++ L + A N S G+TP A+ G+ S +++ ++
Sbjct: 351 AAQQ-GHTDIVTLL------LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403
Query: 882 PN 883
Sbjct: 404 SF 405
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
L S V LL E A +D H+ GLT +H+
Sbjct: 80 LLFVAGLGSDKCVRLLA-------------EAGADLD--HRDMRG--------GLTALHM 116
Query: 822 AAGKDGSEDVLDALTDDPGMVGIE--AWKNARDSSGSTPEDYARLRGH 867
AAG +V++AL +E A D G T + AR
Sbjct: 117 AAGY-VRPEVVEAL--------VELGADIEVEDERGLTALELAREILK 155
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 9e-04
Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 27/131 (20%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
A + L + A V+ K + + G T +
Sbjct: 109 FMEAAVYGKVKALKFLY-------------KRGANVNLRRKTKE-DQERLRKGGATALMD 154
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK----- 876
AA K G +VL L D+ G A NA D+ G +A L S + +
Sbjct: 155 AAEK-GHVEVLKILLDEMG-----ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 877 --KINKRPNGG 885
+N R G
Sbjct: 209 GADVNVRGERG 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 988 | |||
| 1ul4_A | 94 | SPL4, squamosa promoter binding protein-like 4; tr | 100.0 | |
| 1ul5_A | 88 | SPL7, squamosa promoter binding protein-like 7; tr | 100.0 | |
| 1wj0_A | 60 | Squamosa promoter-binding protein-like 12; DNA-bin | 99.94 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.89 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.89 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.87 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.87 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.86 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.86 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.86 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.86 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.86 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.86 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.86 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.86 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.86 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.86 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.85 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.85 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.85 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.85 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.85 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.85 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.84 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.84 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.84 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.84 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.84 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.84 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.84 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.84 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.84 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.83 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.83 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.83 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.83 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.83 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.83 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.83 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.83 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.83 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.83 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.83 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.83 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.82 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.82 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.82 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.81 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.81 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.81 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.81 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.81 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.8 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.8 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.8 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.8 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.8 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.8 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.8 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.8 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.8 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.79 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.79 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.79 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.79 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.79 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.79 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.79 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.79 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.79 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.79 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.79 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.78 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.78 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.78 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.78 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.78 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.77 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.77 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.77 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.77 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.77 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.75 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.75 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.75 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.74 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.74 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.74 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.73 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.73 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.73 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.72 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.71 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.69 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.67 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.67 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.67 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.66 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.63 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.63 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.63 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.61 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.61 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.59 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.58 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.57 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.56 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.55 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.54 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.54 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.51 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.44 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.37 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.32 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.32 |
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=292.19 Aligned_cols=90 Identities=63% Similarity=1.073 Sum_probs=80.5
Q ss_pred CCCCCCCCceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCcccccccCccchHHHHHhhhhhh
Q 001971 141 GGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKR 220 (988)
Q Consensus 141 ~~~~~~~~~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd~~krsCr~~L~~hn~r 220 (988)
++++++.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcC
Q 001971 221 RRKTNPDAVA 230 (988)
Q Consensus 221 rr~~~~~~~~ 230 (988)
|||+++++..
T Consensus 82 RRk~~~~~~~ 91 (94)
T 1ul4_A 82 RRKSSGESGP 91 (94)
T ss_dssp CCSCCCC---
T ss_pred hccCCCCcCC
Confidence 9999998764
|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=281.12 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.5
Q ss_pred CCCceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCcccccccCccchHHHHHhhhhhhhccCC
Q 001971 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (988)
Q Consensus 146 ~~~~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd~~krsCr~~L~~hn~rrr~~~ 225 (988)
+.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 001971 226 PDA 228 (988)
Q Consensus 226 ~~~ 228 (988)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 775
|
| >1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-29 Score=208.98 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCccccccc
Q 001971 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (988)
Q Consensus 146 ~~~~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd 204 (988)
+.++|||+||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=203.04 Aligned_cols=155 Identities=23% Similarity=0.209 Sum_probs=127.7
Q ss_pred cHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhc
Q 001971 677 TKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLA 755 (988)
Q Consensus 677 lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~ 755 (988)
+..+| .+.+..+.+||+++......+ ...+++|++|+..++..+++.||+..++.+ ..+
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-----------~~g~t~l~~a~~~~~~~~~~~ll~~gad~~---------~~d 67 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASD-----------SDGRTPLHHAAENGHKEVVKLLISKGADVN---------AKD 67 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcC-----------CCCCCHHHHHHHcCCHHHHHHHHhcccchh---------hhc
Confidence 44455 466667777777764322222 235889999999999999999998654321 134
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
..|+||||+|++.|+.++|++||++ |+ ++|.+|..|+||||+||. .|+.++|++|
T Consensus 68 ~~g~TpLh~A~~~g~~~~v~~Ll~~-------ga-----------------dvn~~d~~G~TpLh~A~~-~g~~~~v~~L 122 (169)
T 4gpm_A 68 SDGRTPLHHAAENGHKEVVKLLISK-------GA-----------------DVNAKDSDGRTPLHHAAE-NGHKEVVKLL 122 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHC-------cC-----------------CCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence 5689999999999999999999999 88 899999999999999999 9999999999
Q ss_pred hcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 836 TDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++ ||+++.+|.+|+||||+|+.+|+.+++++|+++|++..
T Consensus 123 l~~------gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 123 ISK------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 999 99999999999999999999999999999999999875
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=209.97 Aligned_cols=202 Identities=18% Similarity=0.101 Sum_probs=162.4
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCc---chhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRT---DADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~---~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
.+..|+++|... +.+..++.+++.++. ....+..|.+++|.+| .+.+..+.+|++++......+
T Consensus 8 ~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~---------- 75 (282)
T 1oy3_D 8 DGDTALHLAVIH--QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE---------- 75 (282)
T ss_dssp TCCCHHHHHHHT--TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC----------
T ss_pred CCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------
Confidence 347888887764 777888888887776 2233567899999999 588999999999875322222
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCC--------------------------------------CCchhh
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE--------------------------------------HPSLDL 754 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~--------------------------------------~~~l~~ 754 (988)
....+|||+|+..++.++++.|++...+....... ......
T Consensus 76 -~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 1oy3_D 76 -RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154 (282)
T ss_dssp -TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred -CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence 23578999999999999999999865431110000 000112
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCC-CChHHHHHHhhCCCHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPA-GLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~-G~TPLHiAA~~~G~~eVV~ 833 (988)
+..|.||||+|++.|+.++|++||++ |+ ++|..+.. |.||||+|+. .|+.++|+
T Consensus 155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-------g~-----------------~~~~~~~~~g~tpL~~A~~-~~~~~~v~ 209 (282)
T 1oy3_D 155 NYDGHTPLHVAVIHKDAEMVRLLRDA-------GA-----------------DLNKPEPTCGRTPLHLAVE-AQAASVLE 209 (282)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHH-------TC-----------------CTTCCCTTTCCCHHHHHHH-TTCHHHHH
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCCCCCCCCcCHHHHHHH-cCCHHHHH
Confidence 44688999999999999999999999 77 78888754 9999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+|+++ |++++.+|..|.||||+|+.+|+.+++++|.+++++..
T Consensus 210 ~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 210 LLLKA------GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252 (282)
T ss_dssp HHHHT------TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred HHHHc------CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence 99999 99999999999999999999999999999999998755
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=196.01 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=162.0
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccc-cccccCCCCCCCCCccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~R 715 (988)
+..|+++|... ..+..++.+++.++.....+..|.+++|.++ .+.+..+.||+++.. .... ....
T Consensus 25 g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----------~~~~ 91 (223)
T 2f8y_A 25 GETALHLAARY--SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-----------RMHD 91 (223)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC-----------CCTT
T ss_pred CCchHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-----------CCCC
Confidence 46788887654 6788899999988876655678899999999 588888999988763 1111 1123
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..++.++++.|++..++.+ ..+..|.||||+|+..|+.++|++||++ |+
T Consensus 92 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 149 (223)
T 2f8y_A 92 GTTPLILAARLAVEGMLEDLINSHADVN---------AVDDLGKSALHWAAAVNNVDAAVVLLKN-------GA------ 149 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTT---------CBCTTSCBHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCCCc---------CcCCCCCcHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 5789999999999999999999644321 1244588999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+.+||.+++++|.
T Consensus 150 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 211 (223)
T 2f8y_A 150 -----------NKDMQNNREETPLFLAAR-EGSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLLD 211 (223)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCcCCCCcCHHHHHHH-cCCHHHHHHHHHc------CCCCccccccCCCHHHHHHHhcchHHHHHHH
Confidence 889999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcCC
Q 001971 876 KKINKRP 882 (988)
Q Consensus 876 ~k~ak~~ 882 (988)
++++...
T Consensus 212 ~~g~~~~ 218 (223)
T 2f8y_A 212 EYNLVRS 218 (223)
T ss_dssp HTTCSSC
T ss_pred HcCCCcc
Confidence 9988654
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=201.67 Aligned_cols=189 Identities=17% Similarity=0.126 Sum_probs=158.2
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccc-cccccCCCCCCCCCcccc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~ 714 (988)
.+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+.+..+.+|+++.. .... ...
T Consensus 56 ~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----------~~~ 122 (253)
T 1yyh_A 56 TGETALHLAARY--SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-----------RMH 122 (253)
T ss_dssp TSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-----------CCT
T ss_pred CCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-----------cCC
Confidence 347898887654 6778888999988876655678999999999 588888889988763 1111 112
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..++.++++.|++..++.+ ..+..|.||||+|++.|+.++|++||++ |+
T Consensus 123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------ga----- 181 (253)
T 1yyh_A 123 DGTTPLILAARLAVEGMLEDLINSHADVN---------AVDDLGKSALHWAAAVNNVDAAVVLLKN-------GA----- 181 (253)
T ss_dssp TCCCHHHHHHHHTCSSHHHHHHHTTCCTT---------CBCTTSCBHHHHHHHHTCHHHHHHHHHT-------TC-----
T ss_pred CCCcHHHHHHHcChHHHHHHHHHcCCCCC---------CcCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----
Confidence 35789999999999999999999654321 1244588999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|.+|..|.||||+|+. .|+.+++++|+++ ||+++.+|..|.||||+|+.+||.+++++|
T Consensus 182 ------------~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 182 ------------NKDMQNNREETPLFLAAR-EGSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp ------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCCcCCCCCCHHHHHHH-CCCHHHHHHHHHc------CCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred HHhh
Q 001971 875 QKKI 878 (988)
Q Consensus 875 ~~k~ 878 (988)
....
T Consensus 243 ~~~~ 246 (253)
T 1yyh_A 243 DLEH 246 (253)
T ss_dssp HC--
T ss_pred HHHh
Confidence 8764
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=191.86 Aligned_cols=188 Identities=18% Similarity=0.125 Sum_probs=152.8
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcC-cchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNR-TDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a-~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
..|++.|... +.+..++.++..+. .....+..|.+++|.+| .+.+..+.||++++......+ ...
T Consensus 6 ~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~~g 72 (201)
T 3hra_A 6 VGALLEAANQ--RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-----------SIS 72 (201)
T ss_dssp TTHHHHHHHT--TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------TTS
T ss_pred ccHHHHHHHh--ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------CCC
Confidence 5566665543 77888888887766 33333567899999999 588889999998874322222 235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccc-cCccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDR-LGSENKA 795 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~G-a~~~~~~ 795 (988)
.++||+|+..++.++++.|++.. ..+.. ..+..|.||||+|++.|+.++|++||++ | +
T Consensus 73 ~t~l~~A~~~~~~~~~~~Ll~~~---~~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~------ 131 (201)
T 3hra_A 73 DSPYLYAGAQGRTEILAYMLKHA---TPDLN-----KHNRYGGNALIPAAEKGHIDNVKLLLED-------GRE------ 131 (201)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHS---CCCTT-----CCCTTSCCSHHHHHHTTCHHHHHHHHHH-------CCC------
T ss_pred CCHHHHHHHcCCHHHHHHHHhcc---Ccccc-----cccCCCCcHHHHHHHcCCHHHHHHHHHc-------CCC------
Confidence 78999999999999999999632 11111 1344588999999999999999999999 5 4
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCC-----HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS-----EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~-----~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
++|..|..|.||||+|+. .+. .+++++|+++ |++++.+|..|.||||+|+..|+.++
T Consensus 132 -----------~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 132 -----------DIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMEN------GADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred -----------CcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHC------CCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 789999999999999999 787 8999999999 99999999999999999999999999
Q ss_pred HHHHHHhh
Q 001971 871 IHLVQKKI 878 (988)
Q Consensus 871 veLL~~k~ 878 (988)
+++|.+++
T Consensus 194 ~~~Ll~~G 201 (201)
T 3hra_A 194 SKILAQYN 201 (201)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhcC
Confidence 99998764
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=193.63 Aligned_cols=196 Identities=19% Similarity=0.167 Sum_probs=158.5
Q ss_pred CCcceeecchhhhhHHHHHHHHhh----hcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALE----FNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le----~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
+..|+++|... +.+..++.+++ .+......+..|.+++|.++ .+.+..+.||++++......+
T Consensus 9 g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------- 76 (241)
T 1k1a_A 9 GDTPLHIAVVQ--GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---------- 76 (241)
T ss_dssp TCCHHHHHHHT--TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------
T ss_pred CCcHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC----------
Confidence 46788887654 55666666665 45544444567899999999 588888999998774322222
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
....++||+|+..++.++++.|++......++... .+..|.||||+|++.|+.+++++|+++ |+
T Consensus 77 -~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-----~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~--- 140 (241)
T 1k1a_A 77 -RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-----RNYDGLTALHVAVNTECQETVQLLLER-------GA--- 140 (241)
T ss_dssp -TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-----CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC---
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-----cCcCCCcHHHHHHHcCCHHHHHHHHHc-------CC---
Confidence 23578999999999999999999976533322221 245688999999999999999999999 76
Q ss_pred ccccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
+++..+ ..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++
T Consensus 141 --------------~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v 199 (241)
T 1k1a_A 141 --------------DIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLV 199 (241)
T ss_dssp --------------CTTCCCTTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred --------------CcccccccCCCcHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 778888 789999999999 9999999999999 999999999999999999999999999
Q ss_pred HHHHHhhhcCC
Q 001971 872 HLVQKKINKRP 882 (988)
Q Consensus 872 eLL~~k~ak~~ 882 (988)
++|.+++++..
T Consensus 200 ~~Ll~~ga~~~ 210 (241)
T 1k1a_A 200 RTLVRSGADSS 210 (241)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHhcCCCCC
Confidence 99999887643
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=201.39 Aligned_cols=195 Identities=15% Similarity=0.109 Sum_probs=139.8
Q ss_pred CCcceeecchhh-----------hhHHHHHHHHhhhcCcchhh-hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCC
Q 001971 638 TFFPFIVAEEDV-----------CSEIRMLESALEFNRTDADV-ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHL 704 (988)
Q Consensus 638 ~ffP~LVad~~i-----------CsEI~~LE~~le~~a~~~~~-~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~ 704 (988)
+..|+++|...- -..+..++.+++.+...... +..|.+++|.+| .+.+..+.+|++++......+
T Consensus 10 g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-- 87 (253)
T 1yyh_A 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-- 87 (253)
T ss_dssp ------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--
T ss_pred CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--
Confidence 467777765421 23667788888877765432 567899999999 588888999998874322222
Q ss_pred CCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCc
Q 001971 705 DPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLE 784 (988)
Q Consensus 705 d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~ 784 (988)
....++||+|+..++.++++.|++.... +. ...+..|.||||+|++.|+.++|++||++
T Consensus 88 ---------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---- 146 (253)
T 1yyh_A 88 ---------NMGRTPLHAAVSADAQGVFQILIRNRAT---DL-----DARMHDGTTPLILAARLAVEGMLEDLINS---- 146 (253)
T ss_dssp ---------TTSCCHHHHHHHHTCHHHHHHHHHSTTS---CT-----TCCCTTCCCHHHHHHHHTCSSHHHHHHHT----
T ss_pred ---------CCCCCHHHHHHHcCCHHHHHHHHHcCCC---Cc-----cccCCCCCcHHHHHHHcChHHHHHHHHHc----
Confidence 2357899999999999999999985321 11 11345688999999999999999999999
Q ss_pred cccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH
Q 001971 785 VSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARL 864 (988)
Q Consensus 785 ~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~ 864 (988)
|+ ++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus 147 ---g~-----------------~~~~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~~A~~ 199 (253)
T 1yyh_A 147 ---HA-----------------DVNAVDDLGKSALHWAAA-VNNVDAAVVLLKN------GANKDMQNNREETPLFLAAR 199 (253)
T ss_dssp ---TC-----------------CTTCBCTTSCBHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHH
T ss_pred ---CC-----------------CCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHH
Confidence 77 889999999999999999 9999999999999 99999999999999999999
Q ss_pred cCCHHHHHHHHHhhhcCC
Q 001971 865 RGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 865 rGh~evveLL~~k~ak~~ 882 (988)
.|+.+++++|.+++++..
T Consensus 200 ~~~~~~v~~Ll~~ga~~~ 217 (253)
T 1yyh_A 200 EGSYETAKVLLDHFANRD 217 (253)
T ss_dssp HTCHHHHHHHHHTTCCTT
T ss_pred CCCHHHHHHHHHcCCCcc
Confidence 999999999999987643
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=193.66 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=161.3
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R 715 (988)
++..|+++|... +.+..++.+++.+......+..|.+++|.++ -+.+..+.||++++......+ ..
T Consensus 10 ~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~~ 76 (237)
T 3b7b_A 10 NKRSPLHAAAEA--GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-----------AE 76 (237)
T ss_dssp CSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC-----------TT
T ss_pred CCCCHHHHHHHc--CcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-----------CC
Confidence 346788877654 6778889999988876655678899999999 488888999998774322222 23
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..++.++++.|++... .+.. ..+..|.||||+|++.|+.+++++|+++ |+
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~---~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------ 135 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQ---MDVN-----CQDDGGWTPMIWATEYKHVDLVKLLLSK-------GS------ 135 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTC---CCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCC---CCcc-----cCCCCCCCHHHHHHHcCCHHHHHHHHHC-------CC------
Confidence 4789999999999999999998531 1111 1244588999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+++..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 136 -----------~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 197 (237)
T 3b7b_A 136 -----------DINIRDNEENICLHWAAF-SGCVDIAEILLAA------KCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197 (237)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-HCCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCccCCCCCCHHHHHHH-CCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH
Confidence 789999999999999999 8999999999999 9999999999999999999999999999999
Q ss_pred HhhhcC
Q 001971 876 KKINKR 881 (988)
Q Consensus 876 ~k~ak~ 881 (988)
+++++.
T Consensus 198 ~~gad~ 203 (237)
T 3b7b_A 198 SRDSDV 203 (237)
T ss_dssp TTTCCT
T ss_pred HcCCCC
Confidence 988764
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=195.86 Aligned_cols=189 Identities=15% Similarity=0.085 Sum_probs=111.3
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcch-hhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDA-DVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~-~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
-.|++.|.. .+.+..++.+++...... ..+..|.+++|.+| -+.+..+.||++++......+ ...
T Consensus 7 ~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g 73 (231)
T 3aji_A 7 NIMICNLAY--SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-----------DAG 73 (231)
T ss_dssp SSHHHHHHH--HTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-----------TTS
T ss_pred cchHHHHHH--hCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-----------CCC
Confidence 344444333 355666666665443321 12345666777666 466666666666653222211 123
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..++.++++.|++..++.+. .+..|.||||+|++.|+.+++++|++. |+
T Consensus 74 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------- 130 (231)
T 3aji_A 74 WSPLHIAASAGXDEIVKALLVKGAHVNA---------VNQNGCTPLHYAASKNRHEIAVMLLEG-------GA------- 130 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred CCHHHHHHHcCHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-------
Confidence 5677777777777777777665432110 123456777777777777777777766 55
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
+++..+..|.||||+|+. .|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|.+
T Consensus 131 ----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 131 ----------NPDAKDHYDATAMHRAAA-KGNLKMVHILLFY------KASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp ----------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CCCCcCCCCCcHHHHHHH-cCCHHHHHHHHhc------CCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 556666666666666666 6666666666666 66666666666666666666666666666666
Q ss_pred hhhc
Q 001971 877 KINK 880 (988)
Q Consensus 877 k~ak 880 (988)
++++
T Consensus 194 ~ga~ 197 (231)
T 3aji_A 194 QGAS 197 (231)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6654
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=192.76 Aligned_cols=196 Identities=18% Similarity=0.103 Sum_probs=158.6
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchh-hhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDAD-VERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~-~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
.+|++.|... +.+..++.+++.+..... .+..|.+++|.++ .+.+..+.||++++...... ...-...
T Consensus 3 ~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--------~~~~~~g 72 (228)
T 2dzn_A 3 NYPLHQACME--NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD--------DYPDDSG 72 (228)
T ss_dssp CCHHHHHHHT--TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGG--------GCCCTTS
T ss_pred ccHHHHHHHh--CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc--------ccCCCCC
Confidence 4577766544 778888888887765543 4567899999999 58888899998887321111 1112245
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..++.++++.|++......++ ..+..|.||||+|++.|+.+++++|+++ |+
T Consensus 73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------- 131 (228)
T 2dzn_A 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLN-------KITNQGVTCLHLAVGKKWFEVSQFLIEN-------GA------- 131 (228)
T ss_dssp CCHHHHHHHHCCHHHHHHHHSSSSCCCTT-------CCCTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCcccc-------cCCcCCCCHHHHHHHcCCHhHHHHHHHc-------CC-------
Confidence 78999999999999999999864221111 1244588999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccc-cccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIE-AWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~g-AdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|.+|..|.||||+|+. .|+.+++++|+++ + ++++.+|..|.||||+|+..|+.+++++|.
T Consensus 132 ----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 132 ----------SVRIKDKFNQIPLHRAAS-VGSLKLIELLCGL------GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp ----------CSCCCCTTSCCHHHHHHH-TTCHHHHHHHHTT------TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ----------CccccCCCCCCHHHHHHH-cCCHHHHHHHHhc------CcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 889999999999999999 9999999999999 7 999999999999999999999999999999
Q ss_pred -HhhhcCC
Q 001971 876 -KKINKRP 882 (988)
Q Consensus 876 -~k~ak~~ 882 (988)
+++++..
T Consensus 195 ~~~ga~~~ 202 (228)
T 2dzn_A 195 EKYGAEYD 202 (228)
T ss_dssp HHHCCCSC
T ss_pred HhcCCCCC
Confidence 7777643
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=191.81 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=160.3
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R 715 (988)
.+..|+++|... +.+..++.+++.+......+..|.+++|.++ .+.+..+.||++++......+ ..
T Consensus 39 ~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~~ 105 (231)
T 3aji_A 39 DSRTALHWACSA--GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN-----------QN 105 (231)
T ss_dssp TSCCHHHHHHHH--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------TT
T ss_pred CCCCHHHHHHHc--CcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC-----------CC
Confidence 347788887654 6788888899888766655678899999999 578888889988774322222 23
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..++.++++.|++..++.+ ..+..|.||||+|++.|+.++|++|+++ |+
T Consensus 106 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 163 (231)
T 3aji_A 106 GCTPLHYAASKNRHEIAVMLLEGGANPD---------AKDHYDATAMHRAAAKGNLKMVHILLFY-------KA------ 163 (231)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC---------CcCCCCCcHHHHHHHcCCHHHHHHHHhc-------CC------
Confidence 5789999999999999999998644321 1244588999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|.+|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..++.+++++|.
T Consensus 164 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 164 -----------STNIQDTEGNTPLHLACD-EERVEEAKFLVTQ------GASIYIENKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp -----------CSCCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred -----------CccccCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence 889999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred Hhhhc
Q 001971 876 KKINK 880 (988)
Q Consensus 876 ~k~ak 880 (988)
++++.
T Consensus 226 ~~~a~ 230 (231)
T 3aji_A 226 GEEAS 230 (231)
T ss_dssp HHHHC
T ss_pred ccccc
Confidence 98764
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=184.78 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=136.6
Q ss_pred cCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
.|.+++|.+| .+.+..+.++++.+......+ ....++||+|+..++.++++.|++..++.+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD-----------EEGFTPLMWAAAHGQIAVVEFLLQNGADPQL------ 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC-----------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------
Confidence 3678899988 588888888888764322222 2357899999999999999999996443211
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
.+..|.||||+|+..|+.++|++|+++ |+ ++|..|..|.||||+|+. .|+.+
T Consensus 65 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~ 116 (167)
T 3v31_A 65 ---LGKGRESALSLACSKGYTDIVKMLLDC-------GV-----------------DVNEYDWNGGTPLLYAVH-GNHVK 116 (167)
T ss_dssp ---CCTTCCCHHHHHHHHTCHHHHHHHHHH-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHH
T ss_pred ---cCCCCCcHHHHHHHcCCHHHHHHHHHC-------CC-----------------CCCcCCCCCCCHHHHHHH-cCCHH
Confidence 244588999999999999999999999 77 889999999999999999 99999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++.+..
T Consensus 117 ~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 117 CVKMLLES------GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999987654
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=184.61 Aligned_cols=158 Identities=19% Similarity=0.130 Sum_probs=135.1
Q ss_pred CcccHHHH-HHHHHHHhHhhccccc-ccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCc
Q 001971 674 KIDTKNQA-MDFIHEIGWLFHRSQS-KSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751 (988)
Q Consensus 674 ~~~lh~~a-m~fL~EIGWLLqr~~~-~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~ 751 (988)
.+++|.+| .+.+..+.+++.+... ....+ ....++||+|+..++.++|+.|++..++.+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------- 64 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-----------ERGFTPLIWASAFGEIETVRFLLEWGADPHI------- 64 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-------
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCC-----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-------
Confidence 56788888 5888889999887642 11111 2357899999999999999999997543221
Q ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
.+..|.||||+|+..|+.++|++|+++ |+ ++|..|..|.||||+|+. .|+.++
T Consensus 65 --~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~ 117 (172)
T 3v30_A 65 --LAKERESALSLASTGGYTDIVGLLLER-------DV-----------------DINIYDWNGGTPLLYAVR-GNHVKC 117 (172)
T ss_dssp --CCTTCCCHHHHHHHTTCHHHHHHHHTT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHH
T ss_pred --hcccCCCHHHHHHHCCCHHHHHHHHHc-------CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHH
Confidence 234588999999999999999999999 77 789999999999999999 999999
Q ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 832 LDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 118 v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 118 VEALLAR------GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHc------CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999999999999999988755
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=208.38 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=109.5
Q ss_pred ccchHHHHHHHcC--chHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 715 RFKWLIEFSMDHE--WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 715 R~k~lL~~Ave~g--~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
...++||+|+..| +.++|+.||+..++.+. .+..|.||||+|++.|+.++|++||++ |++
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~---------~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------g~~-- 198 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTA---------KDKADETPLMRAMEFRNREALDLMMDT-------VPS-- 198 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHH-------CSC--
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc---------cCCCCCCHHHHHHHcCCHHHHHHHHhc-------ccc--
Confidence 3567888888888 88888888886443211 244578999999999999999999988 541
Q ss_pred ccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
....++|..|..|.||||+||. .|+.++|++|+++ ||+++.+|..|.||||+|+..||.++++
T Consensus 199 ----------~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~ 261 (364)
T 3ljn_A 199 ----------KSSLRLDYANKQGNSHLHWAIL-INWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTK 261 (364)
T ss_dssp ----------SSSCCTTCCCTTCCCTTHHHHT-TTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHH
T ss_pred ----------cccccccccCCCCCcHHHHHHH-cCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHhChHHHHH
Confidence 0111489999999999999999 9999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhc
Q 001971 873 LVQKKINK 880 (988)
Q Consensus 873 LL~~k~ak 880 (988)
+|.+++++
T Consensus 262 ~Ll~~~~~ 269 (364)
T 3ljn_A 262 ELLQKTDV 269 (364)
T ss_dssp HHHHHSCH
T ss_pred HHHHcCCc
Confidence 99998764
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=199.56 Aligned_cols=201 Identities=20% Similarity=0.189 Sum_probs=165.0
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.+| .+.+..+.||++++......+ ...
T Consensus 58 g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-----------~~g 124 (351)
T 3utm_A 58 KSTPLHLAAGY--NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-----------LWQ 124 (351)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTC
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC-----------CCC
Confidence 47899887755 7788899999998877666678999999999 588889999998874322222 235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhcccccc-CCCCC--------------------------------------------c
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVS-LGEHP--------------------------------------------S 751 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd-~g~~~--------------------------------------------~ 751 (988)
.++||+|+..++.++++.|++..++.+.. ..... .
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 78999999999999999999976654321 10000 0
Q ss_pred hhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC
Q 001971 752 LDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS 828 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~ 828 (988)
......|.||||+|+.. +..+++++|++. |+ ++|.++..|.||||+|+. .|+
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~g~ 259 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRK-------GA-----------------NVNEKNKDFMTPLHVAAE-RAH 259 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-------TC-----------------CTTCCCTTCCCHHHHHHH-TTC
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-------CC-----------------CcCCcCCCCCCHHHHHHH-cCC
Confidence 01234578999999999 558999999999 77 889999999999999999 999
Q ss_pred HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 829 EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 829 ~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
.++|++|+++ |+++|.+|..|.||||+|+..||.+++++|.+++++..
T Consensus 260 ~~~v~~Ll~~------ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 260 NDVMEVLHKH------GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307 (351)
T ss_dssp HHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 9999999999 99999999999999999999999999999999988643
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=200.23 Aligned_cols=198 Identities=13% Similarity=-0.013 Sum_probs=152.1
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcC----cchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNR----TDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a----~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
+..|+++|... +.+..++.+++.+. .....+..|.+++|.+| .+.+..+.+|++++......+
T Consensus 8 g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------- 75 (236)
T 1ikn_D 8 GDSFLHLAIIH--EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD---------- 75 (236)
T ss_dssp CCCTTHHHHHT--TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC----------
T ss_pred CCchhHHHHHc--CChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------
Confidence 35666665533 33333444444333 22223456899999999 588888999998774322222
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
....++||+|+..++.++++.|++...+.... . .....+..|.||||+|++.|+.++|++||++ |+
T Consensus 76 -~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~--- 141 (236)
T 1ikn_D 76 -FRGNTPLHLACEQGCLASVGVLTQSCTTPHLH--S-ILKATNYNGHTCLHLASIHGYLGIVELLVSL-------GA--- 141 (236)
T ss_dssp -TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS--C-GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-------TC---
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHhcccchhHH--H-HhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC---
Confidence 23578999999999999999999965432110 0 0111344588999999999999999999999 77
Q ss_pred ccccccccccccccCCccCCC-CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIGP-AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
++|..+. .|.||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|+.+|+.+++
T Consensus 142 --------------~~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 142 --------------DVNAQEPCNGRTALHLAVD-LQNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp --------------CTTCCCTTTCCCHHHHHHH-TTCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred --------------CCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCcccCCCCCHHHHHHccCchHHH
Confidence 8898987 99999999999 9999999999999 999999999999999999999999999
Q ss_pred HHHHHhhhcCC
Q 001971 872 HLVQKKINKRP 882 (988)
Q Consensus 872 eLL~~k~ak~~ 882 (988)
++|.+++++..
T Consensus 201 ~~Ll~~ga~~~ 211 (236)
T 1ikn_D 201 QQLGQLTLENL 211 (236)
T ss_dssp HHHHTTSCGGG
T ss_pred HHHHHcchhhh
Confidence 99999988643
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=182.50 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=130.3
Q ss_pred CCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCc
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~ 751 (988)
..+++|.+| .+.+..+.+|++++......+ ...+++||+|+. ++.++++.|++..++.+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------- 65 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQN-----------GFGRTALQVMKL-GNPEIARRLLLRGANPDL------- 65 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC-----------TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-------
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccC-----------ccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-------
Confidence 346778888 588888999988763222211 235789999999 999999999996443211
Q ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
.+..|.||||+|++.|+.++|++|+++ |+ ++|.+|..|.||||+|+. .|+.++
T Consensus 66 --~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~ 118 (162)
T 1ihb_A 66 --KDRTGFAVIHDAARAGFLDTLQTLLEF-------QA-----------------DVNIEDNEGNLPLHLAAK-EGHLRV 118 (162)
T ss_dssp --CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHH
T ss_pred --CCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCCcCCCCCCHHHHHHH-cCCHHH
Confidence 244688999999999999999999999 77 889999999999999999 999999
Q ss_pred HHHhhcCCCCCccccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 832 LDALTDDPGMVGIEAW-KNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 832 V~lLL~~p~~vg~gAd-vnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
+++|+++ +++ ++.+|..|.||||+|+..|+.+++++|.+++++
T Consensus 119 v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 119 VEFLVKH------TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHH------SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHc------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999 887 699999999999999999999999999999874
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=188.26 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=134.9
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+..|.+++|.+| .+.+..+.+|++++......+ ....++||+|+..++.++++.|++..++.+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----- 95 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-----------IEGSTALIWAVKNNRLGIAEKLLSKGSNVN----- 95 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-----
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc-----------ccCccHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence 346899999999 577778888888763211111 235789999999999999999999654321
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS 828 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~ 828 (988)
..+..|.||||+|+..|+.++|++|+++ |+ ++|..|..|.||||+|+. .|+
T Consensus 96 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~ 146 (192)
T 2rfm_A 96 ----TKDFSGKTPLMWSIIFGYSEMSYFLLEH-------GA-----------------NVNDRNLEGETPLIVASK-YGR 146 (192)
T ss_dssp ----CCCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CSSCCCTTCCCHHHHHHH-HTC
T ss_pred ----CCCCCCCcHHHHHHHcCCHHHHHHHHHC-------CC-----------------CCCCCCCCCCCHHHHHHH-cCC
Confidence 1244588999999999999999999999 77 889999999999999999 999
Q ss_pred HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 829 EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 829 ~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.+.+
T Consensus 147 ~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 147 SEIVKKLLEL------GADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 9999999999 9999999999999999999999999999998875
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=199.45 Aligned_cols=195 Identities=14% Similarity=0.039 Sum_probs=140.6
Q ss_pred HHHHhhhcCcchhhh----hcCCcccHHHHH----HHHHHHhHhhcccccccccCC-CCCCCCCccccccchHHHHHHHc
Q 001971 656 LESALEFNRTDADVE----RFGKIDTKNQAM----DFIHEIGWLFHRSQSKSRLGH-LDPNTDLFPLRRFKWLIEFSMDH 726 (988)
Q Consensus 656 LE~~le~~a~~~~~~----~~g~~~lh~~am----~fL~EIGWLLqr~~~~~~~~~-~d~~~~l~qi~R~k~lL~~Ave~ 726 (988)
|+.+++.+......+ ..|.+++|.+++ +.+..+.+|+..+........ .+.... ..-....++||+|+..
T Consensus 25 l~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~ 103 (260)
T 3jxi_A 25 LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR-DVYYRGQTALHIAIER 103 (260)
T ss_dssp HHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC-CSSEESBCHHHHHHHT
T ss_pred HHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc-ccccCCCCHHHHHHHc
Confidence 444444665544333 558999998883 555566666665421000000 000000 1112568899999999
Q ss_pred CchHHHHHHhhhhccccccCC-CC----CchhhccCCCcHHHHHHHcCCHHHHHHHhc---cCCCccccccCcccccccc
Q 001971 727 EWCAVVKKLLHILLDGTVSLG-EH----PSLDLALTELGLLHRAVRKNSRPLVDLLLR---FVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 727 g~~aVVk~LL~~l~dg~vd~g-~~----~~l~~~l~G~TpLH~AVr~g~~eiVelLL~---~~p~~~~~Ga~~~~~~l~~ 798 (988)
|+.++|++||+..++.+.... .. .....+..|.||||+|+..|+.++|++||+ + |+
T Consensus 104 g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-------ga--------- 167 (260)
T 3jxi_A 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK-------QA--------- 167 (260)
T ss_dssp TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC-------CC---------
T ss_pred CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc-------CC---------
Confidence 999999999997654332100 00 000011458899999999999999999999 6 77
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCC---------HHHHHHhhcCCCCCcccccc-------ccCCCCCCCHHHHH
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGS---------EDVLDALTDDPGMVGIEAWK-------NARDSSGSTPEDYA 862 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~---------~eVV~lLL~~p~~vg~gAdv-------narD~~G~TPLh~A 862 (988)
++|.+|..|+||||+|+. .|+ .+++++|+++ ||++ +.+|..|.||||+|
T Consensus 168 --------~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A 232 (260)
T 3jxi_A 168 --------DLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPLMMA 232 (260)
T ss_dssp --------CTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred --------CCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHHHHH
Confidence 899999999999999998 666 6999999999 9999 78999999999999
Q ss_pred HHcCCHHHHHHHHHhhhcCC
Q 001971 863 RLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 863 ~~rGh~evveLL~~k~ak~~ 882 (988)
+..||.+++++|.+++.+..
T Consensus 233 ~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhCCCcc
Confidence 99999999999999988654
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=200.49 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=137.8
Q ss_pred cceeecchhhhhHHHHHHHHhhhcCcch--------hhhhcCCcccHHHH-HHHH-HHHhHhhcccccccccCCCCCCCC
Q 001971 640 FPFIVAEEDVCSEIRMLESALEFNRTDA--------DVERFGKIDTKNQA-MDFI-HEIGWLFHRSQSKSRLGHLDPNTD 709 (988)
Q Consensus 640 fP~LVad~~iCsEI~~LE~~le~~a~~~--------~~~~~g~~~lh~~a-m~fL-~EIGWLLqr~~~~~~~~~~d~~~~ 709 (988)
-|++.|.. .+.+..++.+++.++.+. ..+..+.++++.++ .+.. ..+..|+.++......+
T Consensus 13 ~~L~~A~~--~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d------- 83 (269)
T 4b93_B 13 EKLLRAVA--DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS------- 83 (269)
T ss_dssp HHHHHHHH--TTCHHHHHHHHTCC----------------------------------------CCCCTTCCC-------
T ss_pred hHHHHHHH--cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-------
Confidence 45555443 377888888888776432 11335677888777 3333 34566666654222221
Q ss_pred CccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcccccc
Q 001971 710 LFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRL 789 (988)
Q Consensus 710 l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga 789 (988)
..+.+|||+|+..|+.++|++||+..++.. ..+..|.||||+|+..++.+++++||++ |+
T Consensus 84 ----~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~---------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-------g~ 143 (269)
T 4b93_B 84 ----QDGSSPLHVAALHGRADLIPLLLKHGANAG---------ARNADQAVPLHLACQQGHFQVVKCLLDS-------NA 143 (269)
T ss_dssp ----TTSCCHHHHHHHTTCTTHHHHHHHTTCCTT---------CCCTTCCCHHHHHHHHTCHHHHHHHHHT-------TC
T ss_pred ----CCCCCHHHHHHHcCcHHHHHHHHhcCCCcC---------ccCCCCCCccccccccChHHHHHHHHHC-------CC
Confidence 235789999999999999999998654321 1244688999999999999999999999 77
Q ss_pred CccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHH
Q 001971 790 GSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYS 869 (988)
Q Consensus 790 ~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~e 869 (988)
++|.+|..|+||||+|+. .|+.++|++|+++ ||++|.+|..|.||||+|+..|+.+
T Consensus 144 -----------------~~n~~d~~g~TpL~~A~~-~g~~~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~ 199 (269)
T 4b93_B 144 -----------------KPNKKDLSGNTPLIYACS-GGHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVF 199 (269)
T ss_dssp -----------------CSCCCCTTCCCHHHHHHH-TTCGGGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred -----------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCccccCCCcHHHHHHHcCCHH
Confidence 899999999999999999 9999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhhhcCCC---CCceeeeeC
Q 001971 870 YIHLVQKKINKRPN---GGHVVVDIC 892 (988)
Q Consensus 870 vveLL~~k~ak~~~---~~~v~v~ip 892 (988)
++++|.+++++... .+...+.++
T Consensus 200 ~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 200 VVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 99999999886432 334444444
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-21 Score=196.79 Aligned_cols=196 Identities=15% Similarity=0.036 Sum_probs=143.8
Q ss_pred HHHHHhhhcCcchh----hhhcCCcccHHHHH----HHHHHHhHhhcccccccccCC-CCCCCCCccccccchHHHHHHH
Q 001971 655 MLESALEFNRTDAD----VERFGKIDTKNQAM----DFIHEIGWLFHRSQSKSRLGH-LDPNTDLFPLRRFKWLIEFSMD 725 (988)
Q Consensus 655 ~LE~~le~~a~~~~----~~~~g~~~lh~~am----~fL~EIGWLLqr~~~~~~~~~-~d~~~~l~qi~R~k~lL~~Ave 725 (988)
.|+.+++.+..... .+..|.+++|.+|. +.+..+.+|++++........ .+... ...-....++||+|+.
T Consensus 21 ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~ 99 (256)
T 2etb_A 21 LLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC-TDEFYQGHSALHIAIE 99 (256)
T ss_dssp HHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC-CSTTTTTCCHHHHHHH
T ss_pred HHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc-ccccccCCCHHHHHHH
Confidence 45666666665544 45678999999984 566666666665532111100 00000 0011246889999999
Q ss_pred cCchHHHHHHhhhhccccccCCC-C---CchhhccCCCcHHHHHHHcCCHHHHHHHhc---cCCCccccccCcccccccc
Q 001971 726 HEWCAVVKKLLHILLDGTVSLGE-H---PSLDLALTELGLLHRAVRKNSRPLVDLLLR---FVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 726 ~g~~aVVk~LL~~l~dg~vd~g~-~---~~l~~~l~G~TpLH~AVr~g~~eiVelLL~---~~p~~~~~Ga~~~~~~l~~ 798 (988)
.|+.++|+.||+..++.+..... . .....+..|.||||+|++.|+.++|++||+ + |+
T Consensus 100 ~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~-------ga--------- 163 (256)
T 2etb_A 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ-------PA--------- 163 (256)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC-------CC---------
T ss_pred cCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc-------CC---------
Confidence 99999999999976543221000 0 000001138899999999999999999999 6 77
Q ss_pred ccccccccCCccCCCCCChHHHHHHhh-CCCHH-------HHHHhhcCCCCCcccccc-------ccCCCCCCCHHHHHH
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGK-DGSED-------VLDALTDDPGMVGIEAWK-------NARDSSGSTPEDYAR 863 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~-~G~~e-------VV~lLL~~p~~vg~gAdv-------narD~~G~TPLh~A~ 863 (988)
++|.+|..|+||||+|+.. .++.+ +|++|+++ ||++ +.+|..|.||||+|+
T Consensus 164 --------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 164 --------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM------GARLCPTVQLEEISNHQGLTPLKLAA 229 (256)
T ss_dssp --------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred --------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc------CCCcccccccccccCCCCCCHHHHHH
Confidence 8999999999999999973 57777 99999999 9999 999999999999999
Q ss_pred HcCCHHHHHHHHHhhhcC
Q 001971 864 LRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 864 ~rGh~evveLL~~k~ak~ 881 (988)
..||.+++++|.+++.+.
T Consensus 230 ~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 230 KEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhCCCCC
Confidence 999999999999998753
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=190.39 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=143.2
Q ss_pred HhhhcCcchhh-hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHh
Q 001971 659 ALEFNRTDADV-ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLL 736 (988)
Q Consensus 659 ~le~~a~~~~~-~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL 736 (988)
+++.+...... +..|.+++|.+| .+.+..+.||++++......+ ....++||+|+..++.++++.|+
T Consensus 10 Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-----------NMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp TEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC-----------CCCCCHHHHHHHcCCHHHHHHHH
Confidence 44444443322 467899999999 588888999998774322221 23578999999999999999999
Q ss_pred hhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCC
Q 001971 737 HILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGL 816 (988)
Q Consensus 737 ~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~ 816 (988)
+.... +. ...+..|.||||+|++.++.++|++|+++ |+ ++|..+..|.
T Consensus 79 ~~~~~---~~-----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~-----------------~~~~~~~~g~ 126 (223)
T 2f8y_A 79 RNRAT---DL-----DARMHDGTTPLILAARLAVEGMLEDLINS-------HA-----------------DVNAVDDLGK 126 (223)
T ss_dssp HBTTS---CT-----TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCBCTTSC
T ss_pred HcCCC---Cc-----ccCCCCCCcHHHHHHHhCcHHHHHHHHHc-------CC-----------------CCcCcCCCCC
Confidence 85321 11 11245688999999999999999999999 77 7899999999
Q ss_pred hHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 817 TPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 817 TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 127 t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 127 SALHWAAA-VNNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185 (223)
T ss_dssp BHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred cHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 99999999 9999999999999 99999999999999999999999999999999987643
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=190.34 Aligned_cols=202 Identities=17% Similarity=0.137 Sum_probs=160.8
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+.+..+.||++++........... .........
T Consensus 72 g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-~~~~~~~~g 148 (285)
T 1wdy_A 72 GATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE-DQERLRKGG 148 (285)
T ss_dssp CCCHHHHHHHH--TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH-HHHHTTCCC
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH-HHHhhccCC
Confidence 46788876644 6677888888888776655667899999998 4778888888887743222211000 000002235
Q ss_pred chHHHHHHHcCchHHHHHHhhh-hccccccCCCCCchhhccCCCcHHHHHHHcCC----HHHHHHHhccCCCccccccCc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHI-LLDGTVSLGEHPSLDLALTELGLLHRAVRKNS----RPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~-l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~----~eiVelLL~~~p~~~~~Ga~~ 791 (988)
.++||+|+..++.++++.|++. .++ .. ..+..|.||||+|+..++ .+++++|+++ |+
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~-----~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-------g~-- 210 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDEMGAD----VN-----ACDNMGRNALIHALLSSDDSDVEAITHLLLDH-------GA-- 210 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTSCCC----TT-----CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-------TC--
T ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCC----CC-----ccCCCCCCHHHHHHHccccchHHHHHHHHHHc-------CC--
Confidence 6899999999999999999984 322 11 124458899999999999 9999999999 77
Q ss_pred cccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhc-CCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 792 ENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD-DPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~-~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
++|.++..|.||||+|+. .|+.++|++|++ . +++++.+|..|.||||+|+..|+.++
T Consensus 211 ---------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~~------g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 211 ---------------DVNVRGERGKTPLILAVE-KKHLGLVQRLLEQE------HIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp ---------------CSSCCCTTSCCHHHHHHH-TTCHHHHHHHHHSS------SCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ---------------CCCCcCCCCCcHHHHHHH-cCCHHHHHHHHhcc------CCCccccCCCCCcHHHHHHHcCcHHH
Confidence 889999999999999999 999999999999 6 99999999999999999999999999
Q ss_pred HHHHHHhhhcCC
Q 001971 871 IHLVQKKINKRP 882 (988)
Q Consensus 871 veLL~~k~ak~~ 882 (988)
+++|.+++++..
T Consensus 269 ~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 269 AELLCKRGASTD 280 (285)
T ss_dssp HHHHHHHSSCSC
T ss_pred HHHHHHcCCCCC
Confidence 999999998865
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=181.07 Aligned_cols=155 Identities=19% Similarity=0.114 Sum_probs=130.3
Q ss_pred CCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCc
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~ 751 (988)
+.+.++.+| .+.+..+.||+.++......+ ....++||+|+..++.++++.|++..++.+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 74 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAED-----------ASGWTPLHLAAFNGHLEIVEVLLKNGADVN-------- 74 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--------
Confidence 455777777 588888888888764222221 235789999999999999999999643311
Q ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
..+..|.||||+|+..|+.++|++|+++ |+ ++|..|..|.||||+|+. .|+.++
T Consensus 75 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~ 128 (169)
T 2y1l_E 75 -AVDHAGMTPLRLAALFGHLEIVEVLLKN-------GA-----------------DVNANDMEGHTPLHLAAM-FGHLEI 128 (169)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHH
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHH
Confidence 1244588999999999999999999999 77 789999999999999999 999999
Q ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 832 LDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
+++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++
T Consensus 129 v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 129 VEVLLKN------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999 9999999999999999999999999999998764
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=197.43 Aligned_cols=192 Identities=11% Similarity=-0.004 Sum_probs=161.4
Q ss_pred CCCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccc
Q 001971 636 SSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLR 714 (988)
Q Consensus 636 ss~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~ 714 (988)
.++..|+++|... +.+..++.+++.+......+..|.+++|.+| .+.+..+.||++++......+ .
T Consensus 57 ~~g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-----------~ 123 (285)
T 3d9h_A 57 VSDWSPMHEAAIH--GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-----------A 123 (285)
T ss_dssp CCSCCHHHHHHHT--TCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC-----------T
T ss_pred ccCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC-----------C
Confidence 3457898887654 6788899999988766555678999999999 488888999998864322222 2
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..++.++|+.|++..++.. ....|.||||+|++.|+.++|++||++ |+
T Consensus 124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------g~----- 181 (285)
T 3d9h_A 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQ----------PESDLASPIHEAARRGHVECVNSLIAY-------GG----- 181 (285)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCSS----------CSCTTSCHHHHHHHHTCHHHHHHHHHT-------TC-----
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHHHHHC-------CC-----
Confidence 35789999999999999999999654321 122378999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..|..|.||||+|+. .|+.++|++|+++ |++++. |..|.||||+|+..|+.+++++|
T Consensus 182 ------------~~~~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~-~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 182 ------------NIDHKISHLGTPLYLACE-NQQRACVKKLLES------GADVNQ-GKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp ------------CTTCCBTTTBCHHHHHHH-TTCHHHHHHHHHT------TCCTTC-CBTTBCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCCcCCCCCCHHHHHHH-cCcHHHHHHHHHC------CCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Confidence 789999999999999999 9999999999999 999995 99999999999999999999999
Q ss_pred HHhhhcCC
Q 001971 875 QKKINKRP 882 (988)
Q Consensus 875 ~~k~ak~~ 882 (988)
.+++++..
T Consensus 242 l~~gad~~ 249 (285)
T 3d9h_A 242 MDFGADTQ 249 (285)
T ss_dssp HHTTCCTT
T ss_pred HHCCCCCC
Confidence 99987643
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=195.24 Aligned_cols=194 Identities=17% Similarity=0.094 Sum_probs=154.5
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+....+.||+.+.... ..+. ...-...
T Consensus 46 g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~----~~~~---~~~~~~g 116 (241)
T 1k1a_A 46 RQTPLHLAVIT--TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG----TLDL---EARNYDG 116 (241)
T ss_dssp SCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT----SCCT---TCCCTTS
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----cccc---cccCcCC
Confidence 46788887654 6777888999988876655678899999999 47788888888876310 0010 0112245
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..++.++++.|++..++.+. .....|.||||+|++.|+.++|++||++ |+
T Consensus 117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------- 174 (241)
T 1k1a_A 117 LTALHVAVNTECQETVQLLLERGADIDA--------VDIKSGRSPLIHAVENNSLSMVQLLLQH-------GA------- 174 (241)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTC--------CCTTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCccc--------ccccCCCcHHHHHHHcCCHHHHHHHHHc-------CC-------
Confidence 7899999999999999999996543211 1124588999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+.+|+.++++.|..
T Consensus 175 ----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 175 ----------NVNAQMYSGSSALHSASG-RGLLPLVRTLVRS------GADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp ----------CTTCBCTTSCBHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred ----------CCCCcCCCCCCHHHHHHH-cCCHHHHHHHHhc------CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 889999999999999999 9999999999999 99999999999999999999999999998887
Q ss_pred hhh
Q 001971 877 KIN 879 (988)
Q Consensus 877 k~a 879 (988)
+.+
T Consensus 238 ~~a 240 (241)
T 1k1a_A 238 RPA 240 (241)
T ss_dssp ---
T ss_pred CCC
Confidence 653
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=208.25 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=161.6
Q ss_pred CCCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccc
Q 001971 637 STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 637 s~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R 715 (988)
.+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+.+..+.||+.+......... .-..
T Consensus 165 ~g~TpL~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------~d~~ 234 (373)
T 2fo1_E 165 DENTPLMLAVLA--RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE--------LDRN 234 (373)
T ss_dssp TSCCHHHHHHHH--TCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC--------CCTT
T ss_pred CCCCHHHHHHHc--ChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh--------cCCC
Confidence 347898887654 6778889999998876656678999999999 5888889999887621011111 1123
Q ss_pred cchHHHHHHHcC---chHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcc
Q 001971 716 FKWLIEFSMDHE---WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSE 792 (988)
Q Consensus 716 ~k~lL~~Ave~g---~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~ 792 (988)
..++||+|+..+ +.++++.|++..++.+..... .....+..|.||||+|++.|+.++|++||++. |+
T Consensus 235 g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~--- 304 (373)
T 2fo1_E 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA-RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK------GS--- 304 (373)
T ss_dssp SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG-GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS------CC---
T ss_pred CCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc-ccCcccccCCCHHHHHHHhCCHHHHHHHHHhc------CC---
Confidence 578999999998 899999999976553321100 00112456889999999999999999999872 35
Q ss_pred ccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 793 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 793 ~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
++|.+|..|.||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|+.+||.++++
T Consensus 305 --------------~~n~~d~~g~TpL~~A~~-~g~~~iv~~Ll~~------gad~~~~d~~g~t~l~~A~~~g~~~iv~ 363 (373)
T 2fo1_E 305 --------------NKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQ------GASVEAVDATDHTARQLAQANNHHNIVD 363 (373)
T ss_dssp --------------CTTCCCTTCCCHHHHHHH-HTCHHHHHHHHHT------TCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred --------------CccCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCccCCCCCCCCHHHHHHHcCCHHHHH
Confidence 889999999999999999 9999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhcC
Q 001971 873 LVQKKINKR 881 (988)
Q Consensus 873 LL~~k~ak~ 881 (988)
+|.++++++
T Consensus 364 ~Ll~~~a~~ 372 (373)
T 2fo1_E 364 IFDRCRPER 372 (373)
T ss_dssp HHHTTC---
T ss_pred HHHhcCccc
Confidence 999987654
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=185.30 Aligned_cols=126 Identities=25% Similarity=0.237 Sum_probs=114.3
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.+.|+.|++.|+.++|+.||+.+++.+. .+..|.||||+|+..++.+++++||+. |+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~---------~d~~g~t~l~~a~~~~~~~~~~~ll~~-------ga------- 61 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNA---------SDSDGRTPLHHAAENGHKEVVKLLISK-------GA------- 61 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCC---------cCCCCCCHHHHHHHcCCHHHHHHHHhc-------cc-------
Confidence 4579999999999999999996553221 245689999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|.+|..|+||||+|+. .|+.++|++|+++ ||++|.+|.+|+||||+|+..|+.+++++|.+
T Consensus 62 ----------d~~~~d~~g~TpLh~A~~-~g~~~~v~~Ll~~------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 62 ----------DVNAKDSDGRTPLHHAAE-NGHKEVVKLLISK------GADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124 (169)
T ss_dssp ----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------chhhhccCCCCHHHHHHH-cCCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999 9999999999999 99999999999999999999999999999999
Q ss_pred hhhcCC
Q 001971 877 KINKRP 882 (988)
Q Consensus 877 k~ak~~ 882 (988)
++++..
T Consensus 125 ~gad~~ 130 (169)
T 4gpm_A 125 KGADVN 130 (169)
T ss_dssp TTCCTT
T ss_pred cCCCcc
Confidence 987643
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=177.67 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=123.2
Q ss_pred cccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchh
Q 001971 675 IDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLD 753 (988)
Q Consensus 675 ~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~ 753 (988)
++++.+| .+.+..+.||++++.... .-....++||+|+..|+.++++.|++..++.+ .
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------~ 62 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---------A 62 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---------C
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------C
Confidence 3456666 466777777777663111 11235789999999999999999998644321 1
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+..|.||||+|++.|+.++|++|+++ |+ ++|.+|..|.||||+|+. .|+.++++
T Consensus 63 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~v~ 117 (153)
T 1awc_B 63 RTKVDRTPLHMAASEGHANIVEVLLKH-------GA-----------------DVNAKDMLKMTALHWATE-HNHQEVVE 117 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHc-------CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHHHH
Confidence 244588999999999999999999999 77 889999999999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+|+++ |++++.+|..|.||||+|+..|+.+++++|+
T Consensus 118 ~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 118 LLIKY------GADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp HHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred HHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 99999 9999999999999999999999999999873
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=197.60 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=141.8
Q ss_pred hhhhHHHHHHHHhhhcCc--chhhhhcCCcccHHHH-HHHHHHHhHhhcccc-cccccCCCCCCCCCccccccchHHHHH
Q 001971 648 DVCSEIRMLESALEFNRT--DADVERFGKIDTKNQA-MDFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLRRFKWLIEFS 723 (988)
Q Consensus 648 ~iCsEI~~LE~~le~~a~--~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~R~k~lL~~A 723 (988)
.+...+..++..++.... ....+..|.+++|.+| .+.+..+.+|+.++. ..... .....++||+|
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~~g~tpL~~a 152 (276)
T 4hbd_A 84 LVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-----------NRAGYSPIMLT 152 (276)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-----------CTTSCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-----------CCCCCCHHHHH
Confidence 344455555555443322 1112456889999988 578888888888774 21111 22357899999
Q ss_pred H-----HcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccccc
Q 001971 724 M-----DHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVD 798 (988)
Q Consensus 724 v-----e~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~ 798 (988)
+ ..++.++++.|++...... ..+..|.||||+|++.|+.++|++||++ |+
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~---------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-------ga--------- 207 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINA---------KASQAGQTALMLAVSHGRVDVVKALLAC-------EA--------- 207 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTC---------CCTTTCCCHHHHHHHTTCHHHHHHHHHT-------TC---------
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCcc---------ccCCCCCCHHHHHHHcCCHHHHHHHHhC-------CC---------
Confidence 8 6688889999888542111 1244588999999999999999999999 88
Q ss_pred ccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhc-CCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 799 GVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD-DPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 799 ~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~-~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
++|.+|..|+||||+|+. .|+.++|++|++ . |++++.+|..|.||||+|+..|+.+++++|.++
T Consensus 208 --------d~n~~d~~G~TpLh~A~~-~g~~~iv~~Ll~~~------gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 208 --------DVNVQDDDGSTALMCACE-HGHKEIAGLLLAVP------SCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp --------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHTST------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred --------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHhcC------CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 899999999999999999 999999999999 6 999999999999999999999999999999988
Q ss_pred hh
Q 001971 878 IN 879 (988)
Q Consensus 878 ~a 879 (988)
.+
T Consensus 273 ~~ 274 (276)
T 4hbd_A 273 MN 274 (276)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=204.58 Aligned_cols=187 Identities=18% Similarity=0.191 Sum_probs=111.6
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
..|+++|... ..+..++.+++.++.....+..|.+++|.++ .+.+..+.||+.++...... .....
T Consensus 213 ~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~~g~ 279 (437)
T 1n11_A 213 YTPLHIAAKQ--NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-----------NKSGL 279 (437)
T ss_dssp CCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-----------CTTCC
T ss_pred CCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-----------CCCCC
Confidence 4455544432 4455555555555544333445566666666 35555556665544211111 11235
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
++||+|+..++.++++.|++..++.+. .+..|.||||+|++.|+.++|++||++ |+
T Consensus 280 t~L~~A~~~~~~~~~~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga-------- 335 (437)
T 1n11_A 280 TPLHLVAQEGHVPVADVLIKHGVMVDA---------TTRMGYTPLHVASHYGNIKLVKFLLQH-------QA-------- 335 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTC---------CCSSCCCHHHHHHHSSCSHHHHHHHHT-------TC--------
T ss_pred CHHHHHHHcCCHHHHHHHHhCCccCCC---------CCCCCCCHHHHHHHcCcHHHHHHHHhc-------CC--------
Confidence 566666666666666666664332110 123456666666666666666666666 55
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
++|.+|..|.||||+|+. .|+.++|++|+++ ||+++.+|.+|.||||+|+..|+.+++++|...
T Consensus 336 ---------d~n~~~~~g~t~L~~A~~-~g~~~iv~~Ll~~------ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 336 ---------DVNAKTKLGYSPLHQAAQ-QGHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp ---------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------CCCCCCCCCCCHHHHHHH-CChHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 667777777777777777 7777777777777 777777777777777777777777777777655
Q ss_pred h
Q 001971 878 I 878 (988)
Q Consensus 878 ~ 878 (988)
.
T Consensus 400 ~ 400 (437)
T 1n11_A 400 T 400 (437)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=186.95 Aligned_cols=176 Identities=18% Similarity=0.106 Sum_probs=136.4
Q ss_pred CCcccHHHH-HHHHHHHhHhhcc-cccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHR-SQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr-~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
|.+++|.+| .+.+..+.+|+.+ +......+ ....++||+|+..|+.++|+.|++...+.... .
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~-----------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~ 67 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-----------AMGETALHIAALYDNLEAAMVLMEAAPELVFE----P 67 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----C
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC-----------CCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----c
Confidence 678899999 5888889999887 43222221 23578999999999999999999975542110 0
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
....+..|.||||+|+..|+.++|++||++ |++... ......+.+.++..|..|.||||+|+. .|+.+
T Consensus 68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~~~~----~~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~ 135 (232)
T 2rfa_A 68 MTSELYEGQTALHIAVINQNVNLVRALLAR-------GASVSA----RATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEE 135 (232)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-------TCCTTC----CCCSGGGSCCTTCSCCCCSSHHHHHHH-HTCHH
T ss_pred ccccCCCCcCHHHHHHHcCCHHHHHHHHhC-------CCCCCc----ccCCcceeecccccccCCCCHHHHHHH-cCCHH
Confidence 011344688999999999999999999999 552111 011122344566677799999999999 99999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH----HHHHHhhhcC
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI----HLVQKKINKR 881 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv----eLL~~k~ak~ 881 (988)
+|++|+++ |++++.+|..|.||||+|+..|+.+++ ++|.+++++.
T Consensus 136 ~v~~Ll~~------ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 136 IVRLLIEH------GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHT------TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 99999999 999999999999999999999999998 7777777643
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=203.94 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=161.6
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... ..+..++.+++.++.....+..|.+++|.++ .+.+..+.||++.+......+ ...
T Consensus 179 g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-----------~~g 245 (437)
T 1n11_A 179 GLTPLHVAVHH--NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-----------VQG 245 (437)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTC
T ss_pred CCCHHHHHHHc--CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------CCC
Confidence 36788776644 5677888888888766555567899999999 588888899998875322222 134
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..|+.++|+.|++..++.+. .+..|.||||+|++.|+.+++++|+++ |+
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------- 302 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANGNL---------GNKSGLTPLHLVAQEGHVPVADVLIKH-------GV------- 302 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTC---------CCTTCCCHHHHHHHHTCHHHHHHHHHH-------TC-------
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHhC-------Cc-------
Confidence 7899999999999999999986543221 244588999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..+..|+||||+|+. .|+.++|++|+++ |+++|.+|..|.||||+|+.+||.+++++|.+
T Consensus 303 ----------~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 303 ----------MVDATTRMGYTPLHVASH-YGNIKLVKFLLQH------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp ----------CTTCCCSSCCCHHHHHHH-SSCSHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------cCCCCCCCCCCHHHHHHH-cCcHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 889999999999999999 9999999999999 99999999999999999999999999999999
Q ss_pred hhhcCC
Q 001971 877 KINKRP 882 (988)
Q Consensus 877 k~ak~~ 882 (988)
++++..
T Consensus 366 ~ga~~~ 371 (437)
T 1n11_A 366 NGASPN 371 (437)
T ss_dssp TTCCSC
T ss_pred CcCCCC
Confidence 988654
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=194.82 Aligned_cols=207 Identities=14% Similarity=0.056 Sum_probs=148.3
Q ss_pred CcceeecchhhhhHHHHHHHHhh----hcCcchh----hhhcCCcccHHHHH----HHHHHHhHhhcccccccc----cC
Q 001971 639 FFPFIVAEEDVCSEIRMLESALE----FNRTDAD----VERFGKIDTKNQAM----DFIHEIGWLFHRSQSKSR----LG 702 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le----~~a~~~~----~~~~g~~~lh~~am----~fL~EIGWLLqr~~~~~~----~~ 702 (988)
..|++.|... +.+..++.+++ .+....+ .+..|.+++|.+|. +.+..+.+|++++..... ..
T Consensus 14 ~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~ 91 (273)
T 2pnn_A 14 RRSIFDAVAQ--SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN 91 (273)
T ss_dssp HHHHHHHHHT--TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHc--CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence 5677766543 44444444443 3332221 14578999999985 677777777776531000 00
Q ss_pred CCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC-----CCchhhccCCCcHHHHHHHcCCHHHHHHH
Q 001971 703 HLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE-----HPSLDLALTELGLLHRAVRKNSRPLVDLL 777 (988)
Q Consensus 703 ~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~-----~~~l~~~l~G~TpLH~AVr~g~~eiVelL 777 (988)
.. . ...-....++||+|+..|+.++|++||+..++.+..... ......+..|.||||+|++.|+.++|++|
T Consensus 92 ~~---~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 92 AS---Y-TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp CC---C-CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred cc---c-ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 00 0 001124678999999999999999999976543321000 00000112588999999999999999999
Q ss_pred hc---cCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC---------HHHHHHhhcCCCCCccc
Q 001971 778 LR---FVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS---------EDVLDALTDDPGMVGIE 845 (988)
Q Consensus 778 L~---~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~---------~eVV~lLL~~p~~vg~g 845 (988)
|+ + |+ ++|.+|..|+||||+|+. .|+ .+++++|+++ |
T Consensus 168 l~~~~~-------ga-----------------d~~~~d~~g~tpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~------g 216 (273)
T 2pnn_A 168 LQNSWQ-------PA-----------------DISARDSVGNTVLHALVE-VADNTVDNTKFVTSMYNEILIL------G 216 (273)
T ss_dssp HHCSSC-------CC-----------------CTTCCCTTSCCHHHHHHH-HCCSCHHHHHHHHHHHHHHHHH------H
T ss_pred HhcccC-------CC-----------------CceeeCCCCCcHHHHHHH-ccCcchhHHHHHHHHHHHHHHh------h
Confidence 99 6 77 899999999999999999 787 7999999999 9
Q ss_pred cccc-------cCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 846 AWKN-------ARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 846 Advn-------arD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++++ .+|..|.||||+|+..||.+++++|.+++++-+
T Consensus 217 a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 9997 499999999999999999999999999999543
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-21 Score=178.90 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=113.1
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..++.++|+.||+..++.+ ..+..|.||||+|+. |+.++|++||++ |+
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-------g~----- 68 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAGADPN---------ALNRFGRRPIQVMMM-GSAQVAELLLLH-------GA----- 68 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCCTTCCTTTTTSTT-SCHHHHHHHHHH-------TC-----
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCcC---------CcCCCCCCHHHHHHc-CCHHHHHHHHHC-------CC-----
Confidence 45789999999999999999999643311 124568899999999 999999999999 77
Q ss_pred ccccccccccccCCccCCCC-CChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPA-GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~-G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
++|.+|.. |.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++
T Consensus 69 ------------~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 69 ------------EPNCADPATLTRPVHDAAR-EGFLDTLVVLHRA------GARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp ------------CSSCCBTTTTBCHHHHHHH-HTCHHHHHHHHHT------CCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred ------------CCCCcCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 88999999 9999999999 9999999999999 99999999999999999999999999999
Q ss_pred HHHhhhc
Q 001971 874 VQKKINK 880 (988)
Q Consensus 874 L~~k~ak 880 (988)
|.+++++
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9999874
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-21 Score=204.21 Aligned_cols=183 Identities=17% Similarity=0.099 Sum_probs=134.9
Q ss_pred CcceeecchhhhhHH-HHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 639 FFPFIVAEEDVCSEI-RMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 639 ffP~LVad~~iCsEI-~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
..|++.+.. +... ..++.+++.|++....+..|.+++|.+| .+.+..+.+|+.++......+ ...
T Consensus 53 ~t~L~~a~~--~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~-----------~~g 119 (269)
T 4b93_B 53 CHPLCQCPK--CAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN-----------ADQ 119 (269)
T ss_dssp ------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC-----------TTC
T ss_pred CCHHHHHHH--hCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC-----------CCC
Confidence 566665542 2332 3566777888776555678999999999 477888888888774322221 235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++|++|+..++.++++.||+..++.+ . .+..|+||||+||+.|+.++|++||++ |+
T Consensus 120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~n----~-----~d~~g~TpL~~A~~~g~~~~v~~Ll~~-------ga------- 176 (269)
T 4b93_B 120 AVPLHLACQQGHFQVVKCLLDSNAKPN----K-----KDLSGNTPLIYACSGGHHELVALLLQH-------GA------- 176 (269)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSC----C-----CCTTCCCHHHHHHHTTCGGGHHHHHHT-------TC-------
T ss_pred CCccccccccChHHHHHHHHHCCCCCC----C-----CCCCCCCHHHHHHHCCCHHHHHHHHHC-------CC-------
Confidence 789999999999999999999654321 1 345689999999999999999999999 88
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..+..|.||||+||. .|+.++|++|+++ ||+++++|..|+||||+|+.+++ ++++|+.
T Consensus 177 ----------dvn~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~~ 237 (269)
T 4b93_B 177 ----------SINASNNKGNTALHEAVI-EKHVFVVELLLLH------GASVQVLNKRQRTAVDCAEQNSK--IMELLQV 237 (269)
T ss_dssp ----------CTTCBCTTSCBHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCSGGGSCTTCH--HHHHTTC
T ss_pred ----------CCCccccCCCcHHHHHHH-cCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHhCCc--HHHHHHH
Confidence 899999999999999999 9999999999999 99999999999999999987664 5555543
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=174.53 Aligned_cols=124 Identities=22% Similarity=0.153 Sum_probs=111.7
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..|+.++|+.|++..++.+ . .+..|.||||+|+..|+.++|++||++ |+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~----~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~----- 71 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVN----A-----KDEYGLTPLYLATAHGHLEIVEVLLKN-------GA----- 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTT----C-----CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCC----C-----cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----
Confidence 46889999999999999999999644311 1 244588999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|
T Consensus 72 ------------~~~~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 72 ------------DVNAVDAIGFTPLHLAAF-IGHLEIAEVLLKH------GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp ------------CTTCCCTTCCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCcCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred HHhh
Q 001971 875 QKKI 878 (988)
Q Consensus 875 ~~k~ 878 (988)
.+++
T Consensus 133 l~~G 136 (136)
T 2jab_A 133 QKLN 136 (136)
T ss_dssp HHC-
T ss_pred HHcC
Confidence 8764
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=181.05 Aligned_cols=157 Identities=19% Similarity=0.140 Sum_probs=124.9
Q ss_pred cCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
.+.+++|.++ .+.+..+.+++..... . . ...-.+..++||+|+..++.++++.|++..++.+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~----~-~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------- 69 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSV----N-C-----RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH------- 69 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTT----T-C-----CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCC----C-c-----cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-------
Confidence 3456778888 5888888888875421 0 0 0111234689999999999999999998644321
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
..+..|.||||+|++.|+.++|++|+++ |+ ++|..|..|.||||+|+. .|+.+
T Consensus 70 --~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~ 122 (165)
T 3twr_A 70 --AKDKGGLVPLHNACSYGHYEVAELLVKH-------GA-----------------VVNVADLWKFTPLHEAAA-KGKYE 122 (165)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCCTTCCCHHHHHHH-TTCHH
T ss_pred --ccCCCCCCHHHHHHHcCcHHHHHHHHhC-------CC-----------------CCCCcCCCCCCHHHHHHH-cCCHH
Confidence 1244588999999999999999999998 77 788899999999999999 89999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
++++|+++ |++++.+|..|.||||+|+. |+.+++++|.++++
T Consensus 123 ~v~~Ll~~------ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 123 ICKLLLQH------GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHT------TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHHHHHc------CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999 99999999999999999876 89999999988764
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=186.35 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=155.5
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhccccc-ccccCCCCCCCCCccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQS-KSRLGHLDPNTDLFPLRR 715 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~-~~~~~~~d~~~~l~qi~R 715 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+.+..+.||+.++.. ... .-..
T Consensus 44 g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-----------~~~~ 110 (237)
T 3b7b_A 44 QRTPLMEAAEN--NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-----------QDDG 110 (237)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTC-----------CCTT
T ss_pred CCCHHHHHHHh--CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCccc-----------CCCC
Confidence 46788887654 6788889999988876655677899999999 5888889999887621 111 1123
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..++.++++.|++..++.+. .+..|.||||+|++.|+.+++++|+++ |+
T Consensus 111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------ 168 (237)
T 3b7b_A 111 GWTPMIWATEYKHVDLVKLLLSKGSDINI---------RDNEENICLHWAAFSGCVDIAEILLAA-------KC------ 168 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHHHHHCCHHHHHHHHTT-------TC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCc---------cCCCCCCHHHHHHHCCCHHHHHHHHHc-------CC------
Confidence 57899999999999999999996543211 244588999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+...+..|.
T Consensus 169 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 169 -----------DLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSR------DSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred -----------CCCCcCCCCCCHHHHHHH-hCCHhHHHHHHHc------CCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999 9999999999999 9999999999999999999999987666555
Q ss_pred Hhh
Q 001971 876 KKI 878 (988)
Q Consensus 876 ~k~ 878 (988)
+.+
T Consensus 231 ~~l 233 (237)
T 3b7b_A 231 KAL 233 (237)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.5e-20 Score=165.85 Aligned_cols=125 Identities=27% Similarity=0.283 Sum_probs=112.7
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.+++||+|+..++.++++.|++...+.+ . .+..|.||||+|+..++.+++++|++. |+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----~-----~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~------ 59 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN----A-----KDKNGRTPLHLAARNGHLEVVKLLLEA-------GA------ 59 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTT----C-----CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC------
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCC----C-----cCCCCCcHHHHHHHcCcHHHHHHHHHc-------CC------
Confidence 3679999999999999999999654321 1 234588999999999999999999999 76
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+++..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 60 -----------~~~~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 121 (126)
T 1n0r_A 60 -----------DVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEA------GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121 (126)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCcccCCCCCcHHHHHHH-cChHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 788999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred Hhhhc
Q 001971 876 KKINK 880 (988)
Q Consensus 876 ~k~ak 880 (988)
+++++
T Consensus 122 ~~Gad 126 (126)
T 1n0r_A 122 EAGAY 126 (126)
T ss_dssp HHTCC
T ss_pred HcCCC
Confidence 99864
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=188.78 Aligned_cols=189 Identities=17% Similarity=0.095 Sum_probs=139.1
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+..|.+++|.+| .+.+..+.+|+.++....... ..-....+|||+|+..|+.++|+.||+..++.+.
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---- 73 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV---- 73 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGG--------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC----
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----
Confidence 457899999999 588888888887764211111 1112357899999999999999999996543221
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccC------------ccccccccc-----------cccccc
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLG------------SENKALVDG-----------VHKGFL 805 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~------------~~~~~l~~~-----------s~~~y~ 805 (988)
.+..|.||||+|++.|+.++|++|+++.+....+... ....++... ....+.
T Consensus 74 -----~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (282)
T 1oy3_D 74 -----AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148 (282)
T ss_dssp -----CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred -----CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhh
Confidence 2446889999999999999999999984321000000 000000000 011123
Q ss_pred cCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 806 FRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 806 fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
.++|..+..|.||||+|+. .|+.++|++|+++ |++++.+|. .|.||||+|+..|+.+++++|.+++++..
T Consensus 149 ~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 219 (282)
T 1oy3_D 149 LQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219 (282)
T ss_dssp GGTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred hcCCCcCCCCcCHHHHHHH-cCCHHHHHHHHHc------CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 4688899999999999999 9999999999999 999999996 49999999999999999999999987643
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=193.70 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=155.4
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
-.|++.|... +.+..++.+++.++.....+..|.+++|.+| .+.+..+.||+.++......+ ....
T Consensus 41 ~t~l~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-----------~~g~ 107 (299)
T 1s70_B 41 GAVFLAACSS--GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-----------NEGW 107 (299)
T ss_dssp HHHHHHHHHH--TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTSC
T ss_pred ccHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------CCCC
Confidence 4566665544 7888999999988876655678999999999 488888999998874322222 2357
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc----
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN---- 793 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~---- 793 (988)
+|||+|+..|+.++|+.||+..++.+. .+..|.||||+|+..++.++++.|+... |.+...
T Consensus 108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~g~t~l~~A~~~~~~~~~~~ll~~~------~~~~~~~~~~ 172 (299)
T 1s70_B 108 IPLHAAASCGYLDIAEYLISQGAHVGA---------VNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKE 172 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHCCSHHHHHHHHHHHHHH------TCCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCC---------cCCCCCCHHHHHHhcchHHHHHHHHhhc------CCCchhhhhh
Confidence 899999999999999999996543211 2445789999999999888888777531 110000
Q ss_pred ---------cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH
Q 001971 794 ---------KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARL 864 (988)
Q Consensus 794 ---------~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~ 864 (988)
..+.... .......+..|.||||+||. .|+.++|++|+++ |++++.+|..|.||||+|+.
T Consensus 173 ~~~~~~~~~~~~l~~~----~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------g~d~~~~d~~g~tpL~~A~~ 241 (299)
T 1s70_B 173 EERIMLRDARQWLNSG----HINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAH 241 (299)
T ss_dssp HHHHHHHHHHHHHHHT----CCCCCCCTTTCCCHHHHHHH-HTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHH
T ss_pred hhhHHHHHHHHHHhcc----CcchhhhcCCCCCHHHHHHH-CCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHh
Confidence 0000000 01233456778999999998 8999999999988 89999999999999999999
Q ss_pred cCCHHHHHHHHHhhhcCCC---CCceeeeeC
Q 001971 865 RGHYSYIHLVQKKINKRPN---GGHVVVDIC 892 (988)
Q Consensus 865 rGh~evveLL~~k~ak~~~---~~~v~v~ip 892 (988)
.|+.+++++|.+++++... .+...+++.
T Consensus 242 ~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 9999999999998876432 334444444
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=179.47 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=132.8
Q ss_pred CCcccHHHH-HHHHHHHhHhhccccc-ccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQS-KSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~-~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
+..+++.+| .+.+..+.++++.... ... .-....++||+|+..++.++|+.|++..++.+.
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------ 67 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQ-----------GDDHGFSPLHWACREGRSAVVEMLIMRGARINV------ 67 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTC-----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccc-----------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC------
Confidence 446777777 5888888888887421 111 112357899999999999999999996543211
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
.+..|.||||+|+..|+.++|++||++ |+ ++|..|..|.||||+|+. .|+.+
T Consensus 68 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~d~~g~t~L~~A~~-~~~~~ 119 (179)
T 3f6q_A 68 ---MNRGDDTPLHLAASHGHRDIVQKLLQY-------KA-----------------DINAVNEHGNVPLHYACF-WGQDQ 119 (179)
T ss_dssp ---CCTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHH
T ss_pred ---cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCccCCCCCCHHHHHHH-cCCHH
Confidence 244588999999999999999999999 77 889999999999999999 99999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++++|+++ |++++.+|..|.||||+|+..++.+++++|.+++++..
T Consensus 120 ~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 120 VAEDLVAN------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp HHHHHHHT------TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHC------CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999 99999999999999999999999999999999988764
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=182.37 Aligned_cols=200 Identities=14% Similarity=0.029 Sum_probs=159.9
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.++.++.+++.++.....+..|.+++|.++ .+.+..+.+|++++......+ ...
T Consensus 39 g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~~g 105 (285)
T 1wdy_A 39 GWTPLHNAVQM--SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD-----------FYG 105 (285)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-----------TTC
T ss_pred CCcHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-----------ccc
Confidence 36788887654 6778888899988876655678899999999 588888899988774322222 235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCc-hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS-LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~-l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.++||+|+..++.++++.|++..++.+........ ...+..|.||||+|++.|+.++|++|++.. |+
T Consensus 106 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~------~~------ 173 (285)
T 1wdy_A 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM------GA------ 173 (285)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS------CC------
T ss_pred CCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc------CC------
Confidence 78999999999999999999976543321110000 001455889999999999999999999862 44
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCC----HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS----EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 871 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~----~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evv 871 (988)
++|..+..|.||||+|+. .|+ .+++++|+++ |++++.+|..|.||||+|+..|+.+++
T Consensus 174 -----------~~~~~~~~g~t~l~~a~~-~~~~~~~~~i~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 174 -----------DVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-CSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred -----------CCCccCCCCCCHHHHHHH-ccccchHHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 789999999999999999 888 8999999999 999999999999999999999999999
Q ss_pred HHHHH-hhhc
Q 001971 872 HLVQK-KINK 880 (988)
Q Consensus 872 eLL~~-k~ak 880 (988)
++|.+ ++++
T Consensus 236 ~~Ll~~~g~~ 245 (285)
T 1wdy_A 236 QRLLEQEHIE 245 (285)
T ss_dssp HHHHHSSSCC
T ss_pred HHHHhccCCC
Confidence 99998 5443
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=186.51 Aligned_cols=135 Identities=21% Similarity=0.097 Sum_probs=113.2
Q ss_pred ccchHHHHHHHc---CchHHHHHHhhhhccccc-c--CCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccc
Q 001971 715 RFKWLIEFSMDH---EWCAVVKKLLHILLDGTV-S--LGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDR 788 (988)
Q Consensus 715 R~k~lL~~Ave~---g~~aVVk~LL~~l~dg~v-d--~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~G 788 (988)
...++||+|+.. |+.++|+.||+..++.+. + .... ....+..|.||||+|++.|+.++|++||++ |
T Consensus 42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------g 113 (256)
T 2etb_A 42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ-CTDEFYQGHSALHIAIEKRSLQCVKLLVEN-------G 113 (256)
T ss_dssp TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC-CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-------T
T ss_pred CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc-cccccccCCCHHHHHHHcCCHHHHHHHHHc-------C
Confidence 458899999999 999999999998765431 1 0000 001234589999999999999999999999 6
Q ss_pred cCccccccccccccccccCCccCCCC-------------CChHHHHHHhhCCCHHHHHHhhc---CCCCCccccccccCC
Q 001971 789 LGSENKALVDGVHKGFLFRPDVIGPA-------------GLTPIHIAAGKDGSEDVLDALTD---DPGMVGIEAWKNARD 852 (988)
Q Consensus 789 a~~~~~~l~~~s~~~y~fdpN~~d~~-------------G~TPLHiAA~~~G~~eVV~lLL~---~p~~vg~gAdvnarD 852 (988)
+ ++|..+.. |.||||+|+. .|+.++|++|++ + |+++|.+|
T Consensus 114 a-----------------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~~~~------ga~~n~~d 169 (256)
T 2etb_A 114 A-----------------DVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQ------PASLEATD 169 (256)
T ss_dssp C-----------------CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH-TTCHHHHHHHHHCSSC------CCCTTCCC
T ss_pred C-----------------CCCcccccccccccccccccCCCCHHHHHHH-cCCHHHHHHHHhcccc------CCCcCccC
Confidence 6 55665554 9999999999 999999999999 7 99999999
Q ss_pred CCCCCHHHHHHH--cCCHH-------HHHHHHHhhhcC
Q 001971 853 SSGSTPEDYARL--RGHYS-------YIHLVQKKINKR 881 (988)
Q Consensus 853 ~~G~TPLh~A~~--rGh~e-------vveLL~~k~ak~ 881 (988)
..|.||||+|+. .++.+ ++++|.+++++.
T Consensus 170 ~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 170 SLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 999999999999 88988 999999998876
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=179.94 Aligned_cols=127 Identities=23% Similarity=0.218 Sum_probs=111.3
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..|+.++|+.||+..++.+ . .+..|.||||+|+ .|+.++|++||++ |+
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----~-----~~~~g~t~L~~A~-~~~~~~v~~Ll~~-------g~----- 68 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPN----A-----PNSYGRRPIQVMM-MGSARVAELLLLH-------GA----- 68 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTT----C-----CCSSSCCTTTSSC-TTCHHHHHHHHTT-------TC-----
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCC----C-----CCCCCCCHHHHHH-cCCHHHHHHHHHc-------CC-----
Confidence 45789999999999999999998644311 1 2446889999996 9999999999999 77
Q ss_pred ccccccccccccCCccCCCCCCh-HHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLT-PIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~T-PLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
++|.+|..|.| |||+|+. .|+.++|++|+++ |++++.+|..|.||||+|+..|+.+++++
T Consensus 69 ------------~~~~~d~~g~ttpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~v~~ 129 (156)
T 1bi7_B 69 ------------EPNCADPATLTRPVHDAAR-EGFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARY 129 (156)
T ss_dssp ------------CCCCCCTTTCCCHHHHHHH-HTCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred ------------CCCCcCCCCCcHHHHHHHH-CCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence 88999999999 9999999 9999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 001971 874 VQKKINKRP 882 (988)
Q Consensus 874 L~~k~ak~~ 882 (988)
|.+++++..
T Consensus 130 Ll~~ga~~~ 138 (156)
T 1bi7_B 130 LRAAAGGTR 138 (156)
T ss_dssp HSSCC----
T ss_pred HHHcCCCCC
Confidence 999988654
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-20 Score=195.10 Aligned_cols=190 Identities=15% Similarity=0.056 Sum_probs=152.7
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++..... +|.+++|.+| .+.+..+.+|++++......+ ...
T Consensus 31 g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-----------~~g 95 (285)
T 3kea_A 31 GHSASYYAIAD--NNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFD-----------DKG 95 (285)
T ss_dssp SCCHHHHHHHT--TCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC-----------TTS
T ss_pred CCCHHHHHHHc--CCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-----------CCC
Confidence 46788887654 7778888899887765432 5889999998 478888888888764322222 235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCC-CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTE-LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G-~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.+|||+|+..|+.++|+.|++..++.+. .+..| .||||+|+..|+.++|++|+++ |+
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 153 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMF---------YGKTGWKTSFYHAVMLNDVSIVSYFLSE-------IP------ 153 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGG---------CSSSGGGSHHHHHHHTTCHHHHHHHHTT-------SC------
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCc---------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-------CC------
Confidence 7899999999999999999997553221 23446 6999999999999999999999 44
Q ss_pred cccccccccccCCccCCC-CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCH-HHHHHHcCCHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGP-AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTP-EDYARLRGHYSYIHL 873 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TP-Lh~A~~rGh~evveL 873 (988)
+ ..+. .|.||||+|+. .|+.++|++|+++ |++++.+|..|.|| ||+|+..|+.+++++
T Consensus 154 -----------~--~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------gad~n~~~~~g~t~~L~~A~~~~~~~~v~~ 213 (285)
T 3kea_A 154 -----------S--TFDLAILLSCIHITIK-NGHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDIEMLQA 213 (285)
T ss_dssp -----------T--TCCCSTHHHHHHHHHH-TTCHHHHHHHHHH------HHHTCTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred -----------c--cccccCCccHHHHHHH-cChHHHHHHHHHc------CCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence 2 2233 89999999999 9999999999999 99999999999998 999999999999999
Q ss_pred HHHhhhcCCCC
Q 001971 874 VQKKINKRPNG 884 (988)
Q Consensus 874 L~~k~ak~~~~ 884 (988)
|.+++++....
T Consensus 214 Ll~~gad~~~~ 224 (285)
T 3kea_A 214 LFKYDINIYSA 224 (285)
T ss_dssp HTTSCBCSTTT
T ss_pred HHHcCCCCCCC
Confidence 99998876533
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=170.50 Aligned_cols=150 Identities=23% Similarity=0.252 Sum_probs=123.2
Q ss_pred cccHHHH-HHHHHHHhHhhcccc-cccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCch
Q 001971 675 IDTKNQA-MDFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752 (988)
Q Consensus 675 ~~lh~~a-m~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l 752 (988)
+++|.+| .+.+..+.+++++.. ..... .....++||+ +..|+.++++.|++..++.+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-----------~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-------- 63 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-----------NRFGKTALQV-MMFGSTAIALELLKQGASPNV-------- 63 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-----------CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC--------
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCcccc-----------CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC--------
Confidence 4567777 577888888887721 11111 1235789999 999999999999996443211
Q ss_pred hhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHH
Q 001971 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVL 832 (988)
Q Consensus 753 ~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV 832 (988)
.+..|.||||+|++.|+.++|++|+++ |+ ++|.+|..|.||||+|+. .|+.+++
T Consensus 64 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~v 117 (156)
T 1bd8_A 64 -QDTSGTSPVHDAARTGFLDTLKVLVEH-------GA-----------------DVNVPDGTGALPIHLAVQ-EGHTAVV 117 (156)
T ss_dssp -CCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CSCCCCTTSCCHHHHHHH-HTCHHHH
T ss_pred -cCCCCCCHHHHHHHcCcHHHHHHHHHc-------CC-----------------CCCCcCCCCCcHHHHHHH-hChHHHH
Confidence 244688999999999999999999999 77 889999999999999999 9999999
Q ss_pred HHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 833 DALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 833 ~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
++|+++ ++++.+|..|.||||+|+..|+.+++++|.++
T Consensus 118 ~~Ll~~-------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 118 SFLAAE-------SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHTT-------SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHhc-------cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999975 68899999999999999999999999999875
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=187.09 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=130.6
Q ss_pred cCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
.+.+++|.+| .+.+..+.+|+.++......+ ....++||+|+..|+.++|+.||+..++.+.
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------ 101 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYAN-----------VDGLTALHQACIDDNVDMVKFLVENGANINQ------ 101 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-----------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-----------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------
Confidence 4567788888 588999999998774322222 2357899999999999999999996543211
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
.+..|.||||+|+..|+.++|++||++ |+ +++..+..|.||||+|+. .|+.+
T Consensus 102 ---~~~~g~tpL~~A~~~g~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~l~~A~~-~~~~~ 153 (299)
T 1s70_B 102 ---PDNEGWIPLHAAASCGYLDIAEYLISQ-------GA-----------------HVGAVNSEGDTPLDIAEE-EAMEE 153 (299)
T ss_dssp ---CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHCCS-HHHHH
T ss_pred ---CCCCCCcHHHHHHHcCCHHHHHHHHhC-------CC-----------------CCCCcCCCCCCHHHHHHh-cchHH
Confidence 244588999999999999999999999 77 789999999999999999 89999
Q ss_pred HHHHhhcCCCCCccccccc--------------------------cCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 831 VLDALTDDPGMVGIEAWKN--------------------------ARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvn--------------------------arD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++.|+... +++++ ..|..|.||||+|+..|+.+++++|.+++++..
T Consensus 154 ~~~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~ 226 (299)
T 1s70_B 154 LLQNEVNRQ-----GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226 (299)
T ss_dssp HHHHHHHHH-----TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred HHHHHHhhc-----CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 998877642 33332 367899999999999999999999999887543
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=192.02 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=152.8
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.++ .+.+..+.+|++++..... ....
T Consensus 92 g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~g 157 (285)
T 3d9h_A 92 HVSPLHEACLG--GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------------ESDL 157 (285)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC------------SCTT
T ss_pred CCCHHHHHHHC--CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC------------CCCC
Confidence 47888887654 6677888899988876656678999999999 5888888999887642111 1125
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..|+.++++.|++..++.+ ..+..|.||||+|++.|+.++|++||++ |+
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------ga------- 214 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNID---------HKISHLGTPLYLACENQQRACVKKLLES-------GA------- 214 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTT---------CCBTTTBCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCC---------CcCCCCCCHHHHHHHcCcHHHHHHHHHC-------CC-------
Confidence 789999999999999999999654321 1345688999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|. +..|.||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|+ ++.+++++|.+
T Consensus 215 ----------~~~~-~~~g~t~L~~A~~-~~~~~~v~~Ll~~------gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~ 274 (285)
T 3d9h_A 215 ----------DVNQ-GKGQDSPLHAVVR-TASEELACLLMDF------GADTQAKNAEGKRPVELVP--PESPLAQLFLE 274 (285)
T ss_dssp ----------CTTC-CBTTBCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHH
T ss_pred ----------CCCC-CCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHhc--CccHHHHHHHH
Confidence 6774 8899999999999 9999999999999 9999999999999999999 56789999988
Q ss_pred h-hhcCC
Q 001971 877 K-INKRP 882 (988)
Q Consensus 877 k-~ak~~ 882 (988)
+ +++.+
T Consensus 275 ~~~a~l~ 281 (285)
T 3d9h_A 275 REGASLP 281 (285)
T ss_dssp HC-----
T ss_pred hhccCCC
Confidence 8 55543
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=179.27 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=144.2
Q ss_pred CcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccc
Q 001971 639 FFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 639 ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
.+|++.|. ..+.++.++.+++.+......+..|.+++|.++ .+.+..+.||++++....... .....
T Consensus 10 ~~~l~~A~--~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~~~~ 77 (240)
T 3eu9_A 10 TWDIVKAT--QYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG----------GDLNS 77 (240)
T ss_dssp GCCHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB----------TTTTB
T ss_pred chHHHHHH--HcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc----------CCcCC
Confidence 34555433 346777778788777665544566788888887 477777788877764211111 01135
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
++||+|+..++.++++.|++..++.+. .+..|.||||+|++.|+.+++++|+++..+..... ..+.++++
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~ 147 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSL---------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QNGMTPLM 147 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHH
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcc---------cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC-CCCCcHHH
Confidence 788888888888888888876433211 23346788888888888888888888732211000 00113333
Q ss_pred cccccc-----------cccCCccCCC-CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHc
Q 001971 798 DGVHKG-----------FLFRPDVIGP-AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 865 (988)
Q Consensus 798 ~~s~~~-----------y~fdpN~~d~-~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~r 865 (988)
.+...+ +..++|..+. .|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+.+
T Consensus 148 ~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~ 220 (240)
T 3eu9_A 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEA------GANVDAQNIKGESALDLAKQR 220 (240)
T ss_dssp HHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHH-HTCHHHHHHHHHH------TCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHc
Confidence 322111 1236777776 89999999999 8999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcC
Q 001971 866 GHYSYIHLVQKKINKR 881 (988)
Q Consensus 866 Gh~evveLL~~k~ak~ 881 (988)
|+.+++++|.+++++.
T Consensus 221 ~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 221 KNVWMINHLQEARQAK 236 (240)
T ss_dssp TCHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHhhhcc
Confidence 9999999999887654
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=169.91 Aligned_cols=125 Identities=21% Similarity=0.145 Sum_probs=113.3
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
+.++|+.|+..|+.++|+.|++...+.. .+..|.||||+|+..|+.++|++|+++ |+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 58 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT----------TDWLGTSPLHLAAQYGHFSTTEVLLRA-------GV------ 58 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC----------CCTTCCCHHHHHHHHTCHHHHHHHHTT-------TC------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 3679999999999999999999654211 244588999999999999999999998 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 59 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 120 (153)
T 1awc_B 59 -----------SRDARTKVDRTPLHMAAS-EGHANIVEVLLKH------GADVNAKDMLKMTALHWATEHNHQEVVELLI 120 (153)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-HTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCCCCCCCCHHHHHHH-cChHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 789999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcC
Q 001971 876 KKINKR 881 (988)
Q Consensus 876 ~k~ak~ 881 (988)
+++++.
T Consensus 121 ~~ga~~ 126 (153)
T 1awc_B 121 KYGADV 126 (153)
T ss_dssp HTTCCT
T ss_pred HcCCCc
Confidence 998764
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=170.95 Aligned_cols=129 Identities=23% Similarity=0.206 Sum_probs=113.7
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++|+.|+..|+.++++.|++.. ..+. ...+..|.||||+|++.|+.++|++||++ |+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~---~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~----- 66 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQ---SVNC-----RDIEGRQSTPLHFAAGYNRVSVVEYLLQH-------GA----- 66 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTT---TTTC-----CCTTTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-----
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcC---CCCc-----cccccCCCCHHHHHHHcChHHHHHHHHhc-------CC-----
Confidence 3478999999999999999999842 1111 11244578999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|
T Consensus 67 ------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 127 (165)
T 3twr_A 67 ------------DVHAKDKGGLVPLHNACS-YGHYEVAELLVKH------GAVVNVADLWKFTPLHEAAAKGKYEICKLL 127 (165)
T ss_dssp ------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCccCCCCCCHHHHHHH-cCcHHHHHHHHhC------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred HHhhhcCC
Q 001971 875 QKKINKRP 882 (988)
Q Consensus 875 ~~k~ak~~ 882 (988)
.+++++..
T Consensus 128 l~~ga~~~ 135 (165)
T 3twr_A 128 LQHGADPT 135 (165)
T ss_dssp HHTTCCTT
T ss_pred HHcCCCCc
Confidence 99877543
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=189.09 Aligned_cols=178 Identities=17% Similarity=0.071 Sum_probs=131.9
Q ss_pred hhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHc---CchHHHHHHhhhhcccc
Q 001971 668 DVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDH---EWCAVVKKLLHILLDGT 743 (988)
Q Consensus 668 ~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~---g~~aVVk~LL~~l~dg~ 743 (988)
+.+..|.+++|.+| .+.+..+.+|++....... ...+ .....-....++||+|+.. |+.++|+.||+..++..
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~--~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKK-RLTD--SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCC-CTTS--GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhccc-ccCC--cccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 34567889999988 4666666666653210000 0000 0001122468899999987 99999999999875422
Q ss_pred -----ccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCC-----
Q 001971 744 -----VSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGP----- 813 (988)
Q Consensus 744 -----vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~----- 813 (988)
++... ...+..|.||||+|++.|+.++|++||++ |+ ++|..+.
T Consensus 85 ~~~~~i~~~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-------ga-----------------~~~~~~~~~~~~ 137 (273)
T 2pnn_A 85 SLKQFVNASY---TDSYYKGQTALHIAIERRNMTLVTLLVEN-------GA-----------------DVQAAANGDFFK 137 (273)
T ss_dssp CHHHHHTCCC---CSTTTTTCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCBCSGGGS
T ss_pred chhHHhhccc---ccccCCCCCHHHHHHHcCCHHHHHHHHHC-------CC-----------------CcCccccccccc
Confidence 11111 01234688999999999999999999999 66 4555554
Q ss_pred ---------CCChHHHHHHhhCCCHHHHHHhhc---CCCCCccccccccCCCCCCCHHHHHHHcCC---------HHHHH
Q 001971 814 ---------AGLTPIHIAAGKDGSEDVLDALTD---DPGMVGIEAWKNARDSSGSTPEDYARLRGH---------YSYIH 872 (988)
Q Consensus 814 ---------~G~TPLHiAA~~~G~~eVV~lLL~---~p~~vg~gAdvnarD~~G~TPLh~A~~rGh---------~evve 872 (988)
.|.||||+|+. .|+.++|++|++ + |++++.+|..|.||||+|+..|+ .++++
T Consensus 138 ~~~~~~~~~~g~tpL~~A~~-~g~~~~v~~Ll~~~~~------gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~ 210 (273)
T 2pnn_A 138 KTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQNSWQ------PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210 (273)
T ss_dssp SCSSSCCCCSCBSHHHHHHH-TTCHHHHHHHHHCSSC------CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHH-cCCHHHHHHHHhcccC------CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence 79999999999 999999999999 7 99999999999999999999998 89999
Q ss_pred HHHHhhhcCC
Q 001971 873 LVQKKINKRP 882 (988)
Q Consensus 873 LL~~k~ak~~ 882 (988)
+|.+++++..
T Consensus 211 ~Ll~~ga~~n 220 (273)
T 2pnn_A 211 EILILGAKLH 220 (273)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhhhhcc
Confidence 9999988754
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-19 Score=177.01 Aligned_cols=185 Identities=16% Similarity=0.075 Sum_probs=119.6
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
++.+.++++.+| .+.+..+.||++++......+ ....++||+|+..++.++|+.|++...+....
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~-----------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--- 71 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD-----------KENVTLLHWAAINNRIDLVKYYISKGAIVDQL--- 71 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCC-----------CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh---
Confidence 345678899988 588889999998774322221 23578999999999999999999976432211
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccc----------cccCCccCCCCCChH
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKG----------FLFRPDVIGPAGLTP 818 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~----------y~fdpN~~d~~G~TP 818 (988)
....|.||||+|+..|+.++|++|++++.+.... ...+.++++.+...+ ...+++..+..|.||
T Consensus 72 -----~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 145 (240)
T 3eu9_A 72 -----GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145 (240)
T ss_dssp -----BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred -----cCCcCCChhHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence 1234789999999999999999999983221000 000112333322211 113556666666666
Q ss_pred HHHHHhhCCCHHHHHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 819 IHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 819 LHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
||+|+...+..+++++|++. +++++..|. .|.||||+|+..|+.+++++|.+++++
T Consensus 146 l~~a~~~~~~~~~~~~L~~~------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 202 (240)
T 3eu9_A 146 LMWAAYRTHSVDPTRLLLTF------NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202 (240)
T ss_dssp HHHHHHHCCSSTTHHHHHHT------TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHhCChHHHHHHHHhc------CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666523335666666666 666666665 677777777777777777777666554
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=171.37 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=112.2
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.++||+|+..|+.++++.||+...+ .....+..|.||||+|++.|+.++|++||++ |+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------- 60 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDN--------LVNKPDERGFTPLIWASAFGEIETVRFLLEW-------GA------- 60 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSG--------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-------TC-------
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcc--------cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-------
Confidence 4589999999999999999985321 0111245688999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..+..|.||||+|+. .|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|.+
T Consensus 61 ----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 61 ----------DPHILAKERESALSLAST-GGYTDIVGLLLER------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123 (172)
T ss_dssp ----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CchhhcccCCCHHHHHHH-CCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 889999999999999999 9999999999999 99999999999999999999999999999999
Q ss_pred hhhcCC
Q 001971 877 KINKRP 882 (988)
Q Consensus 877 k~ak~~ 882 (988)
++++..
T Consensus 124 ~ga~~~ 129 (172)
T 3v30_A 124 RGADLT 129 (172)
T ss_dssp TTCCTT
T ss_pred cCCCcc
Confidence 876543
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=186.45 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=114.2
Q ss_pred cCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
.|.+++|.++ .+....+..++.++..... . ....++||+|+..|+.++|+.||+..++.+ .
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-----------~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----~-- 65 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----------N-PLPLALLLDSSLEGEFDLVQRIIYEVDDPS----L-- 65 (239)
T ss_dssp ---------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC----C--
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc-----------C-chhhHHHHHHHHcCCHHHHHHHHHcCCCCC----C--
Confidence 4678888888 5666677777776632111 0 124689999999999999999998654221 1
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
.+..|.||||+|+..|+.++|++||++ |+ ++|.+|..|+||||+|+. .|+.+
T Consensus 66 ---~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga-----------------~~~~~d~~g~tpL~~A~~-~~~~~ 117 (239)
T 1ycs_B 66 ---PNDEGITALHNAVCAGHTEIVKFLVQF-------GV-----------------NVNAADSDGWTPLHCAAS-CNNVQ 117 (239)
T ss_dssp ---CCTTSCCHHHHHHHHTCHHHHHHHHHH-------TC-----------------CTTCCCTTCCCHHHHHHH-TTCHH
T ss_pred ---cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCccCCCCCCHHHHHHH-cCCHH
Confidence 245688999999999999999999999 77 899999999999999999 99999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCC-CHHHHH--HHcCCHHHHHHHHHhhhcCC
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGS-TPEDYA--RLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~-TPLh~A--~~rGh~evveLL~~k~ak~~ 882 (988)
+|++|+++ |++++.+|..|. ||||+| +..||.+++++|..++++..
T Consensus 118 ~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 118 VCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166 (239)
T ss_dssp HHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence 99999999 999999998887 999999 78899999999999988765
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=193.70 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=163.8
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+..|+++|... +.+..++.+++.++.....+..|.+++|.+| .+.+..+.+|+.++... .....
T Consensus 20 g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~g 84 (364)
T 3ljn_A 20 NMEKIHVAARK--GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-------------SLWHG 84 (364)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-------------CCBTT
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-------------cccCC
Confidence 36788877654 8888999999998876666778999999999 58889999999887411 11235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCC------C------CchhhccCCCcHHHHHHHcC--CHHHHHHHhccCC
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE------H------PSLDLALTELGLLHRAVRKN--SRPLVDLLLRFVP 782 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~------~------~~l~~~l~G~TpLH~AVr~g--~~eiVelLL~~~p 782 (988)
.++||+|+..|+.++|+.||+...+.+.+... . .....+..|.||||+|+..| +.++|++||++
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-- 162 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-- 162 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--
Confidence 78999999999999999999974321111000 0 00013456889999999999 99999999999
Q ss_pred CccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccc-----cccCCCCCCC
Q 001971 783 LEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAW-----KNARDSSGST 857 (988)
Q Consensus 783 ~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAd-----vnarD~~G~T 857 (988)
|+ ++|..|..|.||||+|+. .|+.++|++|+++ +++ ++.+|..|.|
T Consensus 163 -----ga-----------------~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~------g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 163 -----GA-----------------SPTAKDKADETPLMRAME-FRNREALDLMMDT------VPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp -----TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHH------CSCSSSCCTTCCCTTCCC
T ss_pred -----CC-----------------CCcccCCCCCCHHHHHHH-cCCHHHHHHHHhc------ccccccccccccCCCCCc
Confidence 77 899999999999999999 9999999999998 888 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 858 PEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 858 PLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|||+|+..||.+++++|.+++++..
T Consensus 214 ~L~~A~~~g~~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 214 HLHWAILINWEDVAMRFVEMGIDVN 238 (364)
T ss_dssp TTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999987653
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=174.90 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=132.0
Q ss_pred CCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCc
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPS 751 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~ 751 (988)
|.+++|.+| .+.+..+.+++++...... ..-....++||+|+..|+.++++.|++...+.++.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------ 65 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLL----------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD------ 65 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGG------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccc----------cCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc------
Confidence 457888888 5778888888887632111 11123578999999999999999999965322211
Q ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 752 LDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 752 l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
...+..|.||||+|+..|+.++|++|+++ |.. .+++..+..|.||||+|+. .|+.++
T Consensus 66 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~~---------------~~~~~~~~~g~t~L~~A~~-~~~~~~ 122 (228)
T 2dzn_A 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDR-------PLK---------------PDLNKITNQGVTCLHLAVG-KKWFEV 122 (228)
T ss_dssp GCCCTTSCCHHHHHHHHCCHHHHHHHHSS-------SSC---------------CCTTCCCTTCCCHHHHHHH-TTCHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhC-------CCC---------------cccccCCcCCCCHHHHHHH-cCCHhH
Confidence 01245688999999999999999999998 520 1788899999999999999 999999
Q ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 832 LDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
+++|+++ |++++.+|..|.||||+|+..|+.+++++|.+++
T Consensus 123 ~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 123 SQFLIEN------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999 9999999999999999999999999999999987
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-19 Score=175.09 Aligned_cols=127 Identities=17% Similarity=0.046 Sum_probs=114.4
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.+++||+|+..|+.++++.|++...+.+. .+..|.||||+|++.|+.++|++|+++ |+
T Consensus 35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 92 (192)
T 2rfm_A 35 NRTPLMVACMLGMENAIDKLVENFDKLED---------KDIEGSTALIWAVKNNRLGIAEKLLSK-------GS------ 92 (192)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHHHCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHH-------TC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccc---------ccccCccHHHHHHHcCCHHHHHHHHHC-------CC------
Confidence 47899999999999999999997543211 244588999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 93 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 154 (192)
T 2rfm_A 93 -----------NVNTKDFSGKTPLMWSII-FGYSEMSYFLLEH------GANVNDRNLEGETPLIVASKYGRSEIVKKLL 154 (192)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred -----------CCCCCCCCCCcHHHHHHH-cCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 789999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcCC
Q 001971 876 KKINKRP 882 (988)
Q Consensus 876 ~k~ak~~ 882 (988)
+++++..
T Consensus 155 ~~ga~~~ 161 (192)
T 2rfm_A 155 ELGADIS 161 (192)
T ss_dssp HTTCCTT
T ss_pred HCCCCCC
Confidence 9876643
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=186.88 Aligned_cols=173 Identities=17% Similarity=0.102 Sum_probs=101.0
Q ss_pred hhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhh-hccccccC
Q 001971 669 VERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHI-LLDGTVSL 746 (988)
Q Consensus 669 ~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~-l~dg~vd~ 746 (988)
.+..|.+++|.++ .+.+..+.+++.++........... ..........+|||+|+..|+.++|++||+. .++.+
T Consensus 121 ~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~-~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n--- 196 (337)
T 4g8k_A 121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE-DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--- 196 (337)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT---
T ss_pred hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc-ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC---
Confidence 3456889999988 4777788888887754332221110 0112223467899999999999999999963 23211
Q ss_pred CCCCchhhccCCCcHHHHHHHcCC----HHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHH
Q 001971 747 GEHPSLDLALTELGLLHRAVRKNS----RPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIA 822 (988)
Q Consensus 747 g~~~~l~~~l~G~TpLH~AVr~g~----~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiA 822 (988)
. .+..|.|+||.++..++ ..++++||++ |+ ++|.+|..|+||||+|
T Consensus 197 -~-----~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-------ga-----------------d~n~~d~~g~t~L~~a 246 (337)
T 4g8k_A 197 -A-----CDNMGRNALIHALLSSDDSDVEAITHLLLDH-------GA-----------------DVNVRGERGKTPLILA 246 (337)
T ss_dssp -C-----CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-------TC-----------------CTTCCCGGGCCHHHHH
T ss_pred -c-----cCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-------CC-----------------CCCCcCCCCCCHHHHH
Confidence 1 12335566655554332 2455666665 55 5555555555555555
Q ss_pred HhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 823 AGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 823 A~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+. .|+.++|++|++.. ++++|++|.+|+||||+|+..||.++|++|++++++.
T Consensus 247 ~~-~~~~~~v~~Ll~~~-----~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 247 VE-KKHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp HH-TTCHHHHHHHHTST-----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred HH-hhhhHHHHHHHHhc-----CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 55 55555555555432 4555555555555555555555555555555555543
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=171.83 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=133.4
Q ss_pred cCCcccHHHH-HHHHHHHhHhhccccc-ccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQS-KSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEH 749 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~-~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~ 749 (988)
.+.+++|.+| .+.+..+.++|.+... .... -....++||+|+..++.++|+.|++..++.+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-----------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----- 67 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEV-----------DTEGNTPLNIAVHNNDIEIAKALIDRGADINL----- 67 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-----------CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-----------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----
Confidence 4567888888 5888888888877631 1111 12357899999999999999999996543221
Q ss_pred CchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCH
Q 001971 750 PSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSE 829 (988)
Q Consensus 750 ~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~ 829 (988)
.+..|.||||+|+..|+.++|++|++.. ++ +++..+..|.||||+|+. .|+.
T Consensus 68 ----~~~~g~t~l~~A~~~~~~~~~~~Ll~~~------~~-----------------~~~~~~~~g~t~L~~A~~-~~~~ 119 (201)
T 3hra_A 68 ----QNSISDSPYLYAGAQGRTEILAYMLKHA------TP-----------------DLNKHNRYGGNALIPAAE-KGHI 119 (201)
T ss_dssp ----CCTTSCCHHHHHHHTTCHHHHHHHHHHS------CC-----------------CTTCCCTTSCCSHHHHHH-TTCH
T ss_pred ----CCCCCCCHHHHHHHcCCHHHHHHHHhcc------Cc-----------------ccccccCCCCcHHHHHHH-cCCH
Confidence 2445889999999999999999999652 44 788999999999999999 9999
Q ss_pred HHHHHhhcCCCCCccc-cccccCCCCCCCHHHHHHHcCC-----HHHHHHHHHhhhcCC
Q 001971 830 DVLDALTDDPGMVGIE-AWKNARDSSGSTPEDYARLRGH-----YSYIHLVQKKINKRP 882 (988)
Q Consensus 830 eVV~lLL~~p~~vg~g-AdvnarD~~G~TPLh~A~~rGh-----~evveLL~~k~ak~~ 882 (988)
+++++|+++ + ++++.+|..|.||||+|+..++ .+++++|.+++++..
T Consensus 120 ~~v~~Ll~~------g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 120 DNVKLLLED------GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHH------CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHc------CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 999999999 7 9999999999999999999988 999999999987643
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=169.89 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=113.7
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++|+.|+..|+.++|+.|++..++.+ ..+..|.||||+|++.|+.++|++||++ |+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 71 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVN---------AEDASGWTPLHLAAFNGHLEIVEVLLKN-------GA------ 71 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT---------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCC---------CCCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 4679999999999999999999654321 1244688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 72 -----------~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 133 (169)
T 2y1l_E 72 -----------DVNAVDHAGMTPLRLAAL-FGHLEIVEVLLKN------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133 (169)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCccCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 789999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcC
Q 001971 876 KKINKR 881 (988)
Q Consensus 876 ~k~ak~ 881 (988)
+++++.
T Consensus 134 ~~g~~~ 139 (169)
T 2y1l_E 134 KNGADV 139 (169)
T ss_dssp HTTCCT
T ss_pred HcCCCC
Confidence 987654
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=183.19 Aligned_cols=206 Identities=16% Similarity=0.057 Sum_probs=149.9
Q ss_pred ceeecchhhhhHHHHHHHHhhh-cCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccch
Q 001971 641 PFIVAEEDVCSEIRMLESALEF-NRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKW 718 (988)
Q Consensus 641 P~LVad~~iCsEI~~LE~~le~-~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~ 718 (988)
|++.|. ..+.+..++.++.. +......+..|.+++|.+| .+.+..+.||++++......+ ....+
T Consensus 27 ~L~~A~--~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g~t 93 (351)
T 3utm_A 27 ELLEAA--RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD-----------KGGLV 93 (351)
T ss_dssp HHHHHH--HHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTCCC
T ss_pred hHHHHH--HcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-----------CCCCc
Confidence 444433 34677777777764 2232233567899999999 588999999998874322222 23578
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc----
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK---- 794 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~---- 794 (988)
|||+|+..|+.++|+.|++..++.+. .+..|.||||+|++.|+.++|++||++ |+++...
T Consensus 94 ~L~~A~~~g~~~iv~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~~~~~~~~g 157 (351)
T 3utm_A 94 PLHNACSYGHYEVTELLLKHGACVNA---------MDLWQFTPLHEAASKNRVEVCSLLLSH-------GADPTLVNCHG 157 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTCCCHHHHHHHTTCHHHHHHHHHT-------TCCTTCCCTTS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHHc-------CCCCccccCCC
Confidence 99999999999999999996543211 244588999999999999999999998 4422211
Q ss_pred --cccccccc---------------------c----------cccCCccCCCCCChHHHHHHhhC---CCHHHHHHhhcC
Q 001971 795 --ALVDGVHK---------------------G----------FLFRPDVIGPAGLTPIHIAAGKD---GSEDVLDALTDD 838 (988)
Q Consensus 795 --~l~~~s~~---------------------~----------y~fdpN~~d~~G~TPLHiAA~~~---G~~eVV~lLL~~ 838 (988)
++...... . ........+..|.||||+|+. . +..+++++|+++
T Consensus 158 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~-~~~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA-SLHPKRKQVAELLLRK 236 (351)
T ss_dssp CCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHH-CCSTTHHHHHHHHHHT
T ss_pred CcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHH-HhCccHHHHHHHHHHc
Confidence 11100000 0 000112355789999999999 7 557999999999
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 839 PGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 839 p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|++++.+|..|.||||+|+.+|+.+++++|.+++++..
T Consensus 237 ------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n 274 (351)
T 3utm_A 237 ------GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274 (351)
T ss_dssp ------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ------CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999987643
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=182.68 Aligned_cols=172 Identities=14% Similarity=-0.001 Sum_probs=132.2
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+..|.+++|.+| .+.+..+.+|+...... ..+ ++ ..-....+|||+|+..++.++|+.||+..++.+.
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~--~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---- 73 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGD----LAF--LN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---- 73 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC---------CCC--CC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC----
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhcc----HHH--hh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----
Confidence 457899999999 46666677776654210 000 00 1222467899999999999999999986443211
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS 828 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~ 828 (988)
.+..|.||||+|++.|+.++|++|++. |+.+ .+....+..+..|.||||+|+. .|+
T Consensus 74 -----~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~~~~-----------~~~~~~~~~~~~g~t~L~~A~~-~~~ 129 (236)
T 1ikn_D 74 -----RDFRGNTPLHLACEQGCLASVGVLTQS-------CTTP-----------HLHSILKATNYNGHTCLHLASI-HGY 129 (236)
T ss_dssp -----CCTTCCCHHHHHHHHTCHHHHHHHHHS-------TTTT-----------SSSCGGGCCCTTCCCHHHHHHH-TTC
T ss_pred -----cCCCCCCHHHHHHHcCCHHHHHHHHhc-------ccch-----------hHHHHhhccCCCCCCHHHHHHH-cCC
Confidence 244688999999999999999999998 4310 1111357788899999999999 999
Q ss_pred HHHHHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 829 EDVLDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 829 ~eVV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
.++|++|+++ |++++.+|. .|.||||+|+..|+.+++++|.+++++..
T Consensus 130 ~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 178 (236)
T 1ikn_D 130 LGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178 (236)
T ss_dssp HHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHc------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999 999999998 99999999999999999999999987643
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-19 Score=170.05 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=113.1
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..|+.++++.|++...+ ++ ..+..|.||||+|++.|+.++|++||++ |+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~--~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 60 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENV--IN-------HTDEEGFTPLMWAAAHGQIAVVEFLLQN-------GA------ 60 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSC--TT-------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCC--cC-------CCCCCCCCHHHHHHHCCCHHHHHHHHHc-------CC------
Confidence 36799999999999999999986432 11 1244688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..+..|.||||+|+. .|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|.
T Consensus 61 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 122 (167)
T 3v31_A 61 -----------DPQLLGKGRESALSLACS-KGYTDIVKMLLDC------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122 (167)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-HTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCcCCCCCcHHHHHHH-cCCHHHHHHHHHC------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 789999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcC
Q 001971 876 KKINKR 881 (988)
Q Consensus 876 ~k~ak~ 881 (988)
+++++.
T Consensus 123 ~~g~~~ 128 (167)
T 3v31_A 123 ESGADP 128 (167)
T ss_dssp HTTCCT
T ss_pred HcCCCC
Confidence 987654
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=171.90 Aligned_cols=127 Identities=23% Similarity=0.208 Sum_probs=112.0
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
+.++|+.|+..|+.++|+.||+... .+.. ..+..|.||||+|++.|+.++|++||+. |+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~---~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 63 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTE---NDLN-----QGDDHGFSPLHWACREGRSAVVEMLIMR-------GA------ 63 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTT---SCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCc---cccc-----ccCCCCCCHHHHHHHcCcHHHHHHHHHc-------CC------
Confidence 3568999999999999999998421 1111 1345688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|.||||+|+. .|+.++|++|+++ |++++.+|..|.||||+|+..|+.+++++|.
T Consensus 64 -----------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 64 -----------RINVMNRGDDTPLHLAAS-HGHRDIVQKLLQY------KADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 889999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcC
Q 001971 876 KKINKR 881 (988)
Q Consensus 876 ~k~ak~ 881 (988)
+++++.
T Consensus 126 ~~ga~~ 131 (179)
T 3f6q_A 126 ANGALV 131 (179)
T ss_dssp HTTCCS
T ss_pred HCCCCc
Confidence 988764
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=183.27 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=112.2
Q ss_pred cchHHHHHH---HcCchHHHHHHhhhhcccccc---CCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcccccc
Q 001971 716 FKWLIEFSM---DHEWCAVVKKLLHILLDGTVS---LGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRL 789 (988)
Q Consensus 716 ~k~lL~~Av---e~g~~aVVk~LL~~l~dg~vd---~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga 789 (988)
.+++||+|+ ..|+.++|+.||+..++.... .+. .....+..|.||||+|+..|+.++|++||++ |+
T Consensus 46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga 117 (260)
T 3jxi_A 46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS-PFRDVYYRGQTALHIAIERRCKHYVELLVEK-------GA 117 (260)
T ss_dssp CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC-CBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-------TC
T ss_pred CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc-cccccccCCCCHHHHHHHcCCHHHHHHHHhC-------CC
Confidence 678999999 779999999999986542210 000 0011233688999999999999999999999 76
Q ss_pred CccccccccccccccccCCccCC--------------CCCChHHHHHHhhCCCHHHHHHhhc---CCCCCccccccccCC
Q 001971 790 GSENKALVDGVHKGFLFRPDVIG--------------PAGLTPIHIAAGKDGSEDVLDALTD---DPGMVGIEAWKNARD 852 (988)
Q Consensus 790 ~~~~~~l~~~s~~~y~fdpN~~d--------------~~G~TPLHiAA~~~G~~eVV~lLL~---~p~~vg~gAdvnarD 852 (988)
++|..+ ..|.||||+||. .|+.++|++|++ + |++++.+|
T Consensus 118 -----------------~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~-~g~~~~v~~Ll~~~~~------ga~~~~~d 173 (260)
T 3jxi_A 118 -----------------DVHAQARGRFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTENGHK------QADLRRQD 173 (260)
T ss_dssp -----------------CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH-TTCHHHHHHHHHCSSC------CCCTTCCC
T ss_pred -----------------CcCccccccccCcccccccccCCCCHHHHHHH-cCCHHHHHHHHhcccc------CCCCcccC
Confidence 566665 689999999999 999999999999 7 99999999
Q ss_pred CCCCCHHHHHHHcCC---------HHHHHHHHHhhhcC
Q 001971 853 SSGSTPEDYARLRGH---------YSYIHLVQKKINKR 881 (988)
Q Consensus 853 ~~G~TPLh~A~~rGh---------~evveLL~~k~ak~ 881 (988)
..|.||||+|+..|+ .+++++|.+++++.
T Consensus 174 ~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp TTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 999999999999888 79999999998875
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=170.16 Aligned_cols=125 Identities=20% Similarity=0.156 Sum_probs=112.1
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
.+.++|+.|+..|+.++++.||+..++. . ..+..|.||||+|+. |+.++|++|++. |+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~----~-----~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-------g~----- 61 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV----N-----AQNGFGRTALQVMKL-GNPEIARRLLLR-------GA----- 61 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT----T-----CCCTTSCCHHHHCCS-SCHHHHHHHHHT-------TC-----
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc----c-----ccCccCccHHHHHHc-CcHHHHHHHHHc-------CC-----
Confidence 3578999999999999999999854321 1 124458899999999 999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..+..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|
T Consensus 62 ------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 122 (162)
T 1ihb_A 62 ------------NPDLKDRTGFAVIHDAAR-AGFLDTLQTLLEF------QADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122 (162)
T ss_dssp ------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred HHhhhc
Q 001971 875 QKKINK 880 (988)
Q Consensus 875 ~~k~ak 880 (988)
.+++++
T Consensus 123 l~~g~~ 128 (162)
T 1ihb_A 123 VKHTAS 128 (162)
T ss_dssp HHHSCC
T ss_pred HHccCC
Confidence 999775
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=190.97 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=144.5
Q ss_pred HHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHh
Q 001971 658 SALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLL 736 (988)
Q Consensus 658 ~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL 736 (988)
.+++.+++....+..|.+++|.+| -+.+..+.||+.++......+ ....++||+|+..|+.++|+.||
T Consensus 151 ~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~-----------~~g~t~L~~A~~~g~~~~v~~Ll 219 (373)
T 2fo1_E 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-----------KSERSALHQAAANRDFGMMVYML 219 (373)
T ss_dssp HHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-----------TTCCCHHHHHHHTTCHHHHHHHT
T ss_pred HHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC-----------CCCCCHHHHHHHCCCHHHHHHHH
Confidence 345677766655678999999999 588889999998875322222 23578999999999999999999
Q ss_pred hhhccccccCCCCCchhhccCCCcHHHHHHHcC---CHHHHHHHhccCCCccccccCccccccccccccccccCCccCCC
Q 001971 737 HILLDGTVSLGEHPSLDLALTELGLLHRAVRKN---SRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGP 813 (988)
Q Consensus 737 ~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g---~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~ 813 (988)
+..... .+.. ..+..|.||||+|+..+ +.++|++|+++ |++... ......+..|.
T Consensus 220 ~~~~~~-~~~~-----~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-------g~~~~~---------~~~~~~~~~d~ 277 (373)
T 2fo1_E 220 NSTKLK-GDIE-----ELDRNGMTALMIVAHNEGRDQVASAKLLVEK-------GAKVDY---------DGAARKDSEKY 277 (373)
T ss_dssp TSHHHH-HTTS-----CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-------TCCSSC---------CSGGGTSSSSC
T ss_pred hcCccc-cChh-----hcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-------CCCccc---------ccccccCcccc
Confidence 854100 1111 12456889999999998 89999999999 551100 00012345788
Q ss_pred CCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 814 ~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
.|.||||+||. .|+.++|++|+++. +++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 278 ~g~t~Lh~A~~-~g~~~~v~~Ll~~~-----~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 278 KGRTALHYAAQ-VSNMPIVKYLVGEK-----GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340 (373)
T ss_dssp CCCCTHHHHHS-SCCHHHHHHHHHHS-----CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred cCCCHHHHHHH-hCCHHHHHHHHHhc-----CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 99999999999 99999999999871 49999999999999999999999999999999987643
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=170.34 Aligned_cols=126 Identities=25% Similarity=0.220 Sum_probs=108.4
Q ss_pred cccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc
Q 001971 714 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 714 ~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
....++||+|+..|+.++++.||+..++.+ ..+..|.||||+|+..|+.++|++|+++ |+
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~---- 67 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPN---------VKDHAGWTPLHEACNHGHLKVVELLLQH-------KA---- 67 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSC---------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------cCCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC----
Confidence 346889999999999999999999644321 1244688999999999999999999999 77
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..++.+++++
T Consensus 68 -------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~ 127 (137)
T 3c5r_A 68 -------------LVNTTGYQNDSPLHDAAK-NGHVDIVKLLLSY------GASRNAVNIFGLRPVDYTDDESMKSLLLL 127 (137)
T ss_dssp -------------CTTCCCGGGCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred -------------cccCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhccHHHHHhh
Confidence 789999999999999999 9999999999999 99999999999999999999999998888
Q ss_pred HHHhhh
Q 001971 874 VQKKIN 879 (988)
Q Consensus 874 L~~k~a 879 (988)
|.+...
T Consensus 128 l~~~~~ 133 (137)
T 3c5r_A 128 PEKNES 133 (137)
T ss_dssp C-----
T ss_pred cccccc
Confidence 876643
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=154.42 Aligned_cols=92 Identities=30% Similarity=0.373 Sum_probs=87.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhc
Q 001971 758 ELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD 837 (988)
Q Consensus 758 G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~ 837 (988)
|+||||+|++.|+.++|++||+. |+ ++|.+|..|.||||+|+. .|+.+++++|++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~n~~d~~g~t~L~~A~~-~~~~~~v~~Ll~ 56 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-------GA-----------------DVNAKDKNGRTPLHLAAR-NGHLEVVKLLLE 56 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCcccCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence 78999999999999999999999 77 889999999999999999 999999999999
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 838 DPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 838 ~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
+ |++++.+|..|.||||+|+..|+.+++++|.+++++
T Consensus 57 ~------ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 57 A------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp T------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred c------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9 999999999999999999999999999999998763
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=182.81 Aligned_cols=140 Identities=22% Similarity=0.162 Sum_probs=119.0
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
-..|+.|+..+....++.|+...++..... .....+..|.||||+|++. |+.++|++||++ |+
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~---~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-------ga---- 196 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI---PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-------SG---- 196 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC---CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-------CS----
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhc---cccccccCCCCcchHHHHhcccchHHHHHHHHHC-------CC----
Confidence 468999999999999999998655422110 0001244588999999999 899999999999 88
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
++|.+|..|+||||+||. .|+.++|++|+++ ||+++++|..|.||||+|+..||.+++++
T Consensus 197 -------------~in~~d~~g~TpLh~A~~-~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 256 (278)
T 1dcq_A 197 -------------NLDKQTGKGSTALHYCCL-TDNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEEL 256 (278)
T ss_dssp -------------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -------------CccccCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCccCCCCCHHHHHHHcCCHHHHHH
Confidence 899999999999999999 9999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCCCCCceeeee
Q 001971 874 VQKKINKRPNGGHVVVDI 891 (988)
Q Consensus 874 L~~k~ak~~~~~~v~v~i 891 (988)
|.++++++. +.|..+.+
T Consensus 257 Ll~~ga~~~-~~~~~v~~ 273 (278)
T 1dcq_A 257 LTQALSGRF-NSHVHVEY 273 (278)
T ss_dssp HHHHHTTCC-CSSCCCCC
T ss_pred HHHcCCCCC-Ccceeeec
Confidence 999998765 55555543
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=160.30 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=101.2
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..|+.++++.|++...+.+ ..+..|.||||+|+..|+.++|++||++ |+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~------ 64 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDVN---------RTLEGGRKPLHYAADCGQLEILEFLLLK-------GA------ 64 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTT---------SCCTTSSCHHHHHHHTTCHHHHHHHHTT-------TC------
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcC---------ccCCCCCcHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 4789999999999999999999643211 1244688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|.+|..|.||||+|+. .|+.++|++|+++ |++++.+|..|.||||+|. +.++.++|
T Consensus 65 -----------~~~~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~---~~~~~~ll 122 (123)
T 3aaa_C 65 -----------DINAPDKHHITPLLSAVY-EGHVSCVKLLLSK------GADKTVKGPDGLTAFEATD---NQAIKALL 122 (123)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred -----------CCCcCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence 889999999999999999 9999999999999 9999999999999999994 45555554
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=164.42 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=109.7
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
|..++|++|+..|+.++++.||+. .. .+.. ..+..|.||||+ +..|+.++|++|+++ |+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~-~~--~~~~-----~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-------g~----- 59 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHR-EL--VHPD-----ALNRFGKTALQV-MMFGSTAIALELLKQ-------GA----- 59 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHT-TC--CCTT-----CCCTTSCCHHHH-SCTTCHHHHHHHHHT-------TC-----
T ss_pred CcchHHHHHHHhCCHHHHHHHHHh-hC--cCcc-----ccCCCCCcHHHH-HHcCCHHHHHHHHHC-------CC-----
Confidence 346899999999999999999985 21 1111 124458899999 999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL 874 (988)
++|..|..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|
T Consensus 60 ------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 120 (156)
T 1bd8_A 60 ------------SPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQEGHTAVVSFL 120 (156)
T ss_dssp ------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ------------CCCCcCCCCCCHHHHHHH-cCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHhChHHHHHHH
Confidence 889999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred HHh
Q 001971 875 QKK 877 (988)
Q Consensus 875 ~~k 877 (988)
.++
T Consensus 121 l~~ 123 (156)
T 1bd8_A 121 AAE 123 (156)
T ss_dssp HTT
T ss_pred Hhc
Confidence 987
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=183.11 Aligned_cols=158 Identities=16% Similarity=0.073 Sum_probs=134.5
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+..|.+++|.+| .+.+..+.+|+.++...... ...+|||+|+..|+.++|+.|++..++.+.
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---- 90 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-------------ENEFPLHQAATLEDTKIVKILLFSGLDDSQ---- 90 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC-------------TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC----
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----
Confidence 567899999999 58888999999887422111 147899999999999999999996543211
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCC-ChHHHHHHhhCC
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAG-LTPIHIAAGKDG 827 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G-~TPLHiAA~~~G 827 (988)
.+..|.||||+|+..|+.++|++||++ |+ ++|..+..| .||||+|+. .|
T Consensus 91 -----~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga-----------------~~~~~~~~g~~t~L~~A~~-~~ 140 (285)
T 3kea_A 91 -----FDDKGNTALYYAVDSGNMQTVKLFVKK-------NW-----------------RLMFYGKTGWKTSFYHAVM-LN 140 (285)
T ss_dssp -----CCTTSCCHHHHHHHTTCHHHHHHHHHH-------CG-----------------GGGGCSSSGGGSHHHHHHH-TT
T ss_pred -----cCCCCCcHHHHHHHcCCHHHHHHHHhc-------CC-----------------CCCccCCCCCCCHHHHHHH-cC
Confidence 244688999999999999999999999 77 889999999 899999999 99
Q ss_pred CHHHHHHhhcCCCCCccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 828 SEDVLDALTDDPGMVGIEAWKNARDS-SGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 828 ~~eVV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+.+++++|+++ ++++ .|. .|.||||+|+..|+.+++++|.+++++..
T Consensus 141 ~~~~v~~Ll~~------g~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 141 DVSIVSYFLSE------IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp CHHHHHHHHTT------SCTT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhC------CCcc--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 99999999999 7766 343 89999999999999999999999988754
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=169.74 Aligned_cols=110 Identities=24% Similarity=0.145 Sum_probs=98.1
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..|+.++++.||+ ..+ ++ . .+..|.||||+|+..|+.++|++||++ |+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~--~-----~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------ga----- 100 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRD--VD--A-----VDENGRTALLFVAGLGSDKCVRLLAEA-------GA----- 100 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSC--TT--C-----CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCC--CC--C-----cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----
Confidence 45789999999999999999998 322 22 1 244688999999999999999999999 77
Q ss_pred ccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHc
Q 001971 795 ALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 865 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~r 865 (988)
++|..+ ..|.||||+|+. .|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 101 ------------~~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 101 ------------DLDHRDMRGGLTALHMAAG-YVRPEVVEALVEL------GADIEVEDERGLTALELAREI 153 (183)
T ss_dssp ------------CTTCCCSSSSCCHHHHHHH-TTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHH
T ss_pred ------------CCCcCCCCCCCCHHHHHHh-cCcHHHHHHHHHc------CCCCcCCCCCCCCHHHHHHHh
Confidence 788888 899999999999 9999999999999 999999999999999999876
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=174.60 Aligned_cols=128 Identities=8% Similarity=-0.069 Sum_probs=110.5
Q ss_pred ccchHHHHHHHcCch----HHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCC------HHHHHHHhccCCCc
Q 001971 715 RFKWLIEFSMDHEWC----AVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNS------RPLVDLLLRFVPLE 784 (988)
Q Consensus 715 R~k~lL~~Ave~g~~----aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~------~eiVelLL~~~p~~ 784 (988)
..++|||+|+..++. ++|++||+.+++.+. .+..|+||||+|+..++ .++|++||++
T Consensus 37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~---------~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~---- 103 (186)
T 3t8k_A 37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKS---------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK---- 103 (186)
T ss_dssp HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC---------CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC---------CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC----
Confidence 357899999999975 489999996554221 24568999999999987 6889999999
Q ss_pred cccccCccccccccccccccccCCccCCCCCC-hHHHHHHhhCCC-----HHHHHHhhc-CCCCCccccccccCCCCCCC
Q 001971 785 VSDRLGSENKALVDGVHKGFLFRPDVIGPAGL-TPIHIAAGKDGS-----EDVLDALTD-DPGMVGIEAWKNARDSSGST 857 (988)
Q Consensus 785 ~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~-TPLHiAA~~~G~-----~eVV~lLL~-~p~~vg~gAdvnarD~~G~T 857 (988)
|+ ++|.+|..|. ||||+|+. .+. .+++++|++ + ||+++.+|..|.|
T Consensus 104 ---Ga-----------------din~~d~~g~ttpLh~A~~-~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~T 156 (186)
T 3t8k_A 104 ---GA-----------------DITALYKPYKIVVFKNIFN-YFVDENEMIPLYKLIFSQS------GLQLLIKDKWGLT 156 (186)
T ss_dssp ---TC-----------------CSSSCBGGGTBCTTGGGGG-CCSCHHHHHHHHHHHHTST------TCCTTCCCTTSCC
T ss_pred ---CC-----------------CCCccCCCcCchHHHHHHH-cCCChhhHHHHHHHHHHhc------CCCCcccCCCCCC
Confidence 88 8999999999 99999998 554 469999999 8 9999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 858 PEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 858 PLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|||+|+..|+.+++++|...+.+..
T Consensus 157 pL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 157 ALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998876543
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=178.03 Aligned_cols=127 Identities=19% Similarity=0.100 Sum_probs=114.7
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..|+.++|+.||+..++.+. .+..|.||||+|+..|+.++|++||++ |+
T Consensus 21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------~d~~g~tpLh~A~~~g~~~~v~~Ll~~-------ga------ 78 (229)
T 2vge_A 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQ---------PNEEGITALHNAICGANYSIVDFLITA-------GA------ 78 (229)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSSCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred hhHHHHHHHHcCCHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHHC-------CC------
Confidence 46799999999999999999996543211 245688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHH--HHcCCHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYA--RLRGHYSYIH 872 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A--~~rGh~evve 872 (988)
++|..|..|.||||+|+. .|+.++|++|+++ |++++.+| ..|.||||+| +..|+.++++
T Consensus 79 -----------~~n~~d~~g~tpLh~A~~-~g~~~~v~~Ll~~------ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~ 140 (229)
T 2vge_A 79 -----------NVNSPDSHGWTPLHCAAS-CNDTVICMALVQH------GAAIFATTLSDGATAFEKCDPYREGYADCAT 140 (229)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHTT------TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred -----------CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence 899999999999999999 9999999999999 99999997 6999999999 9999999999
Q ss_pred HHHHhhhcCC
Q 001971 873 LVQKKINKRP 882 (988)
Q Consensus 873 LL~~k~ak~~ 882 (988)
+|.+++++..
T Consensus 141 ~Ll~~ga~~~ 150 (229)
T 2vge_A 141 YLADVEQSMG 150 (229)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHcCCCcc
Confidence 9999988764
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=177.94 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=90.0
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||.|+..+...+++.||+..++.+. ...++||||.|++.|+.++|++||+. |+
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----------~~~~~t~L~~A~~~g~~~~v~~Ll~~-------g~------ 61 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF----------NPLPLALLLDSSLEGEFDLVQRIIYE-------VD------ 61 (239)
T ss_dssp ------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-------TS------
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCccc----------CchhhHHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 57899999999999999999996543221 23478999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|+||||+||. .|+.++|++|+++ |+++|.+|..|.||||+|+..||.+++++|.
T Consensus 62 -----------~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll 123 (239)
T 1ycs_B 62 -----------DPSLPNDEGITALHNAVC-AGHTEIVKFLVQF------GVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123 (239)
T ss_dssp -----------SCCCCCTTSCCHHHHHHH-HTCHHHHHHHHHH------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 889999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcCC
Q 001971 876 KKINKRP 882 (988)
Q Consensus 876 ~k~ak~~ 882 (988)
+++++..
T Consensus 124 ~~ga~~~ 130 (239)
T 1ycs_B 124 ESGAAVF 130 (239)
T ss_dssp HTTCCTT
T ss_pred HcCCCcc
Confidence 9988654
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=175.56 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=105.8
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
..++||+|+..|+.++|+.||+..++.+ ..+..|.||||+|+..|+.++|++||++. |+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~------g~------ 131 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVN---------GLDKAGSTALYWACHGGHKDIVEMLFTQP------NI------ 131 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTT---------CCCTTSCCHHHHHHHTTCHHHHHHHTTST------TC------
T ss_pred cccccccccccCcHHHHHHHHhCCCCcc---------ccCCCCCCHHHHHHHcCCHHHHHHHHcCC------CC------
Confidence 4679999999999999999999544311 12456899999999999999999999872 55
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|.+|..|.||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|+..|+.+++++|.
T Consensus 132 -----------~~~~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~ 193 (222)
T 3ehr_A 132 -----------ELNQQNKLGDTALHAAAW-KGYADIVQLLLAK------GARTDLRNIEKKLAFDMATNAACASLLKKKQ 193 (222)
T ss_dssp -----------CCCCCCTTSCCHHHHHHH-HTCHHHHHHHHHH------TCCSCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred -----------CccccCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCccccCCCCCHHHHhcchhHHHHHHHHh
Confidence 789999999999999999 9999999999999 9999999999999999999999999999998
Q ss_pred HhhhcCC
Q 001971 876 KKINKRP 882 (988)
Q Consensus 876 ~k~ak~~ 882 (988)
.+++...
T Consensus 194 ~~~~~~~ 200 (222)
T 3ehr_A 194 GTDAVRT 200 (222)
T ss_dssp -------
T ss_pred ccchhhh
Confidence 8877543
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=178.38 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=128.3
Q ss_pred CCcccHHHH-HHHHHHHhHhhccccc--ccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCC
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQS--KSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEH 749 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~--~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~ 749 (988)
.+..+|.++ .+.+..+..++.+... ....+ ....+|||+|+..|+.++|+.||+..+. +..
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d-----------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~---~~~-- 139 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIAD-----------SNGNTALHYSVSHANFPVVQQLLDSGVC---KVD-- 139 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHHTSCC---CTT--
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC-----------CCCCCHHHHHHHCCCHHHHHHHHHCCCC---cCC--
Confidence 455667777 4777777777655321 11111 2357899999999999999999996431 111
Q ss_pred CchhhccCCCcHHHHHH-----HcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHh
Q 001971 750 PSLDLALTELGLLHRAV-----RKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAG 824 (988)
Q Consensus 750 ~~l~~~l~G~TpLH~AV-----r~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~ 824 (988)
..+..|.||||+|+ ..++.++|++|++. |+ .++..+..|.||||+||.
T Consensus 140 ---~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~tpLh~A~~ 192 (276)
T 4hbd_A 140 ---KQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-------GN-----------------INAKASQAGQTALMLAVS 192 (276)
T ss_dssp ---CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-------SC-----------------TTCCCTTTCCCHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-------CC-----------------CccccCCCCCCHHHHHHH
Confidence 13456899999999 77899999999999 66 677888899999999999
Q ss_pred hCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH-hhhcC
Q 001971 825 KDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK-KINKR 881 (988)
Q Consensus 825 ~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~-k~ak~ 881 (988)
.|+.++|++|+++ ||++|.+|..|.||||+|+..|+.+++++|.+ ++++.
T Consensus 193 -~g~~~~v~~Ll~~------gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~ 243 (276)
T 4hbd_A 193 -HGRVDVVKALLAC------EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI 243 (276)
T ss_dssp -TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred -cCCHHHHHHHHhC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence 9999999999999 99999999999999999999999999999998 66553
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=176.19 Aligned_cols=125 Identities=22% Similarity=0.164 Sum_probs=110.4
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
...++||+|+..|+.++|+.||+ ..+ ++ . .+..|.||||+|+..|+.++|++||++ |+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~--~-----~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------ga----- 101 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRD--VD--A-----VDENGRTALLFVAGLGSDKCVRLLAEA-------GA----- 101 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCC--TT--C-----BCTTSCBHHHHHHHHTCHHHHHHHHHT-------TC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCC--CC--C-----cCCCCCCHHHHHHHCCCHHHHHHHHHc-------CC-----
Confidence 45789999999999999999998 332 11 1 345689999999999999999999999 77
Q ss_pred ccccccccccccCCccCC-CCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHH----------
Q 001971 795 ALVDGVHKGFLFRPDVIG-PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYAR---------- 863 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d-~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~---------- 863 (988)
++|..+ ..|.||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|+
T Consensus 102 ------------~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------ga~~~~~d~~g~t~l~~A~~~~~~~~~~~ 162 (244)
T 3ui2_A 102 ------------DLDHRDMRGGLTALHMAAG-YVRPEVVEALVEL------GADIEVEDERGLTALELAREILKTTPKGN 162 (244)
T ss_dssp ------------CTTCCCSSSCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHHTTCCCSS
T ss_pred ------------CCCcCCCCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCCCCCCCcHHHHHHHHHhccCCCC
Confidence 888888 889999999999 9999999999999 9999999999999999998
Q ss_pred ------HcCCHHHHHHHHHhhhc
Q 001971 864 ------LRGHYSYIHLVQKKINK 880 (988)
Q Consensus 864 ------~rGh~evveLL~~k~ak 880 (988)
..||.+++++|.++..+
T Consensus 163 ~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 163 PMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHcChHHHHHHHHHhccc
Confidence 66899999999987544
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=177.04 Aligned_cols=205 Identities=15% Similarity=0.024 Sum_probs=146.9
Q ss_pred cceeecchhhhhHHHHHHHHhhhcCcchhh-hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCC-----------
Q 001971 640 FPFIVAEEDVCSEIRMLESALEFNRTDADV-ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDP----------- 706 (988)
Q Consensus 640 fP~LVad~~iCsEI~~LE~~le~~a~~~~~-~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~----------- 706 (988)
.|++.|.+. +.+..++.+++.|++.... ++.|.+++|.+| .+.+..+.+||+++......+....
T Consensus 27 t~L~~Av~~--g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 27 HLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred hHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 455554443 6677777777777654332 235677787777 4666667777766643222211100
Q ss_pred ------------CCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCC-CchhhccCCCcHHHHHHHcCCHHH
Q 001971 707 ------------NTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEH-PSLDLALTELGLLHRAVRKNSRPL 773 (988)
Q Consensus 707 ------------~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~-~~l~~~l~G~TpLH~AVr~g~~ei 773 (988)
.+. ..-....++|++|+..++.++++.|++..++.+...... .....+..|.||||+|+++|+.++
T Consensus 105 ~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 105 VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp HHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred chhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 011 122345789999999999999999999776544321111 111234568899999999999999
Q ss_pred HHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCC----HHHHHHhhcCCCCCccccccc
Q 001971 774 VDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS----EDVLDALTDDPGMVGIEAWKN 849 (988)
Q Consensus 774 VelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~----~eVV~lLL~~p~~vg~gAdvn 849 (988)
|++||+.. |+ ++|..|..|.||||.++. .+. ..|+++|+++ ||++|
T Consensus 184 v~~LL~~~------ga-----------------d~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~------gad~n 233 (337)
T 4g8k_A 184 LKILLDEM------GA-----------------DVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDH------GADVN 233 (337)
T ss_dssp HHHHHHHS------CC-----------------CTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHT------TCCTT
T ss_pred HHHHHhcc------CC-----------------CcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHC------CCCCC
Confidence 99999641 66 899999999999998876 332 4689999999 99999
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 850 ARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 850 arD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
.+|..|.||||+|+..|+.+++++|...
T Consensus 234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 234 VRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp CCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred CcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 9999999999999999999999988764
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-18 Score=181.69 Aligned_cols=184 Identities=15% Similarity=-0.017 Sum_probs=132.9
Q ss_pred hHHHHHHHHhhhcCcchhhh-----------------hcCCcccHHHHHHHHHHHhHhhc-ccccccccCCCCCCCCCcc
Q 001971 651 SEIRMLESALEFNRTDADVE-----------------RFGKIDTKNQAMDFIHEIGWLFH-RSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 651 sEI~~LE~~le~~a~~~~~~-----------------~~g~~~lh~~am~fL~EIGWLLq-r~~~~~~~~~~d~~~~l~q 712 (988)
..+..++.+++.+....... .......|.++.+.+.++.-+|- .+..... ..
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~----------~~ 127 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI----------PV 127 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCS----------CC
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCccc----------cc
Confidence 78888888888776543210 00111124455666666654443 3321111 01
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCC---HHHHHHHhccCCCcccccc
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNS---RPLVDLLLRFVPLEVSDRL 789 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~---~eiVelLL~~~p~~~~~Ga 789 (988)
-....+|||+|+..|+.++|++||+..++.+ ..+..|+||||+|+..|+ .++++.||++ +.
T Consensus 128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n---------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~-------~~ 191 (327)
T 1sw6_A 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL---------YGDNMGESCLVKAVKSVNNYDSGTFEALLDY-------LY 191 (327)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH-------HG
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---------CcCCCCCCHHHHHHHhcccccHHHHHHHHHh-------hh
Confidence 2246889999999999999999999654322 134568999999999998 6888888888 42
Q ss_pred CccccccccccccccccCCccCCCCCChHHHHHHhh---CCCHHHHHHhhcCCCCCcccc--------------------
Q 001971 790 GSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGK---DGSEDVLDALTDDPGMVGIEA-------------------- 846 (988)
Q Consensus 790 ~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~---~G~~eVV~lLL~~p~~vg~gA-------------------- 846 (988)
. ++|.+|..|+||||+|+.. .|+.+++++|++. ++
T Consensus 192 ~----------------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~------~~~~~~~~~~~~i~~~~~~~g~ 249 (327)
T 1sw6_A 192 P----------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI------LMGWIVKKQNRPIQSGTNEKES 249 (327)
T ss_dssp G----------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH------HHHHHHHGGGCCEEEC------
T ss_pred c----------------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH------HHHHHhcccchHHHhhhhcccC
Confidence 1 6889999999999999962 5899999999876 32
Q ss_pred -------------------------ccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 847 -------------------------WKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 847 -------------------------dvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++|.+|..|+||||+|+..||.+++++|++++++..
T Consensus 250 ~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~ 310 (327)
T 1sw6_A 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310 (327)
T ss_dssp ----------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred CcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 588999999999999999999999999999988754
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=177.28 Aligned_cols=131 Identities=24% Similarity=0.183 Sum_probs=114.0
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
.++|+.|+..++..+|+.||+..++.+... .....+..|.||||+||+. |+.++|++||++ |+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-------ga---- 217 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPL---PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-------GG---- 217 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCE---ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-------SS----
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccC---CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-------CC----
Confidence 467999999999999999998654322100 0001245688999999997 899999999999 77
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveL 873 (988)
++|.+|..|.||||+|+. .|+.++|++|+++ ||+++++|..|.||||+|+..|+.+++++
T Consensus 218 -------------dvn~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~~~~~iv~~ 277 (301)
T 2b0o_E 218 -------------HLDAKAADGNTALHYAAL-YNQPDCLKLLLKG------RALVGTVNEAGETALDIARKKHHKECEEL 277 (301)
T ss_dssp -------------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCCSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred -------------CCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 899999999999999999 9999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcC
Q 001971 874 VQKKINKR 881 (988)
Q Consensus 874 L~~k~ak~ 881 (988)
|++++++.
T Consensus 278 Ll~~ga~~ 285 (301)
T 2b0o_E 278 LEQAQAGT 285 (301)
T ss_dssp HHHHHHHT
T ss_pred HHHhcCCC
Confidence 99999874
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-18 Score=182.47 Aligned_cols=185 Identities=13% Similarity=0.073 Sum_probs=131.9
Q ss_pred HHHHhhhcCcchh-hhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCc---hH
Q 001971 656 LESALEFNRTDAD-VERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEW---CA 730 (988)
Q Consensus 656 LE~~le~~a~~~~-~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~---~a 730 (988)
++.+++.+..... .+..|.+++|.+| .+.+..+.+|++++......+ ....+|||+|+..|+ .+
T Consensus 113 ~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d-----------~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-----------NMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp HHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-----------TTCCCHHHHHHHSSHHHHTT
T ss_pred HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC-----------CCCCCHHHHHHHhcccccHH
Confidence 3445555565544 4678999999999 588899999999885433332 235789999999998 78
Q ss_pred HHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHH----cCCHHHHHHHhccCCCcc-------------ccccCc--
Q 001971 731 VVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVR----KNSRPLVDLLLRFVPLEV-------------SDRLGS-- 791 (988)
Q Consensus 731 VVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr----~g~~eiVelLL~~~p~~~-------------~~Ga~~-- 791 (988)
+++.|++.+.. .++ ..+..|+||||+|++ .|+.++|++||+...... ..|+++
T Consensus 182 ~~~~ll~~~~~-~~~-------~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 253 (327)
T 1sw6_A 182 TFEALLDYLYP-CLI-------LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253 (327)
T ss_dssp CHHHHHHHHGG-GGG-------EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred HHHHHHHhhhc-ccc-------CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc
Confidence 88888887632 111 135568999999999 899999999997611000 001100
Q ss_pred ----cccccccccccccc--cCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHc
Q 001971 792 ----ENKALVDGVHKGFL--FRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 865 (988)
Q Consensus 792 ----~~~~l~~~s~~~y~--fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~r 865 (988)
+.+|++......++ .++|.+|..|+||||+||. .|+.++|++|+++ ||+++++|..|+||||+|+.+
T Consensus 254 ~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDY------GADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp ------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH-HCCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTCC-
T ss_pred ccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhc
Confidence 01222221110110 1589999999999999999 9999999999999 999999999999999999876
Q ss_pred C
Q 001971 866 G 866 (988)
Q Consensus 866 G 866 (988)
|
T Consensus 327 g 327 (327)
T 1sw6_A 327 E 327 (327)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=180.66 Aligned_cols=126 Identities=20% Similarity=0.090 Sum_probs=112.0
Q ss_pred chHHHHHHHc-CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 717 KWLIEFSMDH-EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 717 k~lL~~Ave~-g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.++||.|+.. ++.++|+.||+..++.+.. . ....|.||||+|+..|+.++|++||++ |+
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~----~---~~~~g~TpLh~Aa~~g~~~iv~~LL~~-------Ga------ 259 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWV----N---GGQDNATPLIQATAANSLLACEFLLQN-------GA------ 259 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCC----C---TTTTCCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCcc----c---cccCCCCHHHHHHHCCCHHHHHHHHHc-------CC------
Confidence 4699999999 9999999999965543211 1 124588999999999999999999999 87
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..|..|+||||+|+. .|+.++|++|+++ ||+++++|.+|.||||+|+..||.+++++|.
T Consensus 260 -----------dvn~~d~~G~TpLh~A~~-~g~~~~v~~LL~~------Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl 321 (368)
T 3jue_A 260 -----------NVNQADSAGRGPLHHATI-LGHTGLACLFLKR------GADLGARDSEGRDPLTIAMETANADIVTLLR 321 (368)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------CCCCCCCCCCCHHHHHHH-cCcHHHHHHHHHC------cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 899999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred Hhhhc
Q 001971 876 KKINK 880 (988)
Q Consensus 876 ~k~ak 880 (988)
..+.+
T Consensus 322 ~~~~~ 326 (368)
T 3jue_A 322 LAKMR 326 (368)
T ss_dssp HHHC-
T ss_pred HcCCC
Confidence 87643
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-17 Score=146.50 Aligned_cols=97 Identities=28% Similarity=0.335 Sum_probs=91.2
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+..|.||||+|++.|+.+++++||+. |+ ++|..|..|.||||+|+. .|+.++++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~-----------------~~~~~d~~g~t~L~~A~~-~~~~~~~~ 59 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-------GA-----------------DVNARSKDGNTPLHLAAK-NGHAEIVK 59 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-------TC-----------------CSSCCCSSSCCTTHHHHT-TTCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCCcCCCCCCHHHHHHH-cCcHHHHH
Confidence 355689999999999999999999999 76 789999999999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+|+++ |++++.+|..|.||||+|+..|+.+++++|.+++++.
T Consensus 60 ~Ll~~------g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 101 (115)
T 2l6b_A 60 LLLAK------GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101 (115)
T ss_dssp HHTTT------TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH
T ss_pred HHHHc------CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 99999 9999999999999999999999999999999998764
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=148.53 Aligned_cols=98 Identities=29% Similarity=0.330 Sum_probs=91.6
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+..|.||||+|++.|+.++|++||+. |+ ++|..|..|.||||+|+. .|+.++++
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~~~ 60 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-------GS-----------------DPNVKDHAGWTPLHEACN-HGHLKVVE 60 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CSCCCCTTSCCHHHHHHH-TTCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCcCCCCCCCHHHHHHH-cCCHHHHH
Confidence 355689999999999999999999999 77 789999999999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+|+++ +++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 61 ~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 103 (137)
T 3c5r_A 61 LLLQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103 (137)
T ss_dssp HHHHT------TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHc------CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999 99999999999999999999999999999999877643
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=145.54 Aligned_cols=94 Identities=23% Similarity=0.140 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhh
Q 001971 757 TELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALT 836 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL 836 (988)
.+.||||+|++.|+.++|++||+. |+ ++|..|..|.||||+|+. .|+.+++++|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~-------~~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll 60 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAK-------GE-----------------DVNRTLEGGRKPLHYAAD-CGQLEILEFLL 60 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTSCCTTSSCHHHHHHH-TTCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-------CC-----------------CcCccCCCCCcHHHHHHH-cCCHHHHHHHH
Confidence 367999999999999999999998 66 789999999999999999 99999999999
Q ss_pred cCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 837 DDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 837 ~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
++ |++++.+|..|.||||+|+..|+.+++++|.+++++.
T Consensus 61 ~~------g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 99 (123)
T 3aaa_C 61 LK------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99 (123)
T ss_dssp TT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred Hc------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99 9999999999999999999999999999999987754
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-17 Score=154.51 Aligned_cols=141 Identities=17% Similarity=0.073 Sum_probs=102.2
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
.+.+.+++|.+| .+.+..+.||++++......+ ...+++||+|+ .++.++++.||+..++.+.
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~---- 72 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPN-----------SYGRRPIQVMM-MGSARVAELLLLHGAEPNC---- 72 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC----
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------CCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC----
Confidence 356789999999 688999999998774322222 23578999985 8999999999996543211
Q ss_pred CCchhhccCCCc-HHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCC
Q 001971 749 HPSLDLALTELG-LLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDG 827 (988)
Q Consensus 749 ~~~l~~~l~G~T-pLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G 827 (988)
.+..|.| |||+|++.|+.++|++||++ |+ ++|.+|..|.||||+|+. .|
T Consensus 73 -----~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-------ga-----------------~~~~~d~~g~tpl~~A~~-~~ 122 (156)
T 1bi7_B 73 -----ADPATLTRPVHDAAREGFLDTLVVLHRA-------GA-----------------RLDVRDAWGRLPVDLAEE-LG 122 (156)
T ss_dssp -----CCTTTCCCHHHHHHHHTCHHHHHHHHHH-------TC-----------------CSSCCCTTCCCHHHHHHH-HT
T ss_pred -----cCCCCCcHHHHHHHHCCCHHHHHHHHHc-------CC-----------------CCcccCCCCCCHHHHHHH-hC
Confidence 2445778 99999999999999999999 77 899999999999999999 89
Q ss_pred CHHHHHHhhcCCCCCccccccccCCCCCCCHHHHH
Q 001971 828 SEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYA 862 (988)
Q Consensus 828 ~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A 862 (988)
+.+++++|+++ ||+++.+|..|.||.+-+
T Consensus 123 ~~~~v~~Ll~~------ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 123 HRDVARYLRAA------AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHSSC------C-----------------
T ss_pred HHHHHHHHHHc------CCCCCccCcCcCcccccC
Confidence 99999999999 999999999999998743
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-16 Score=141.80 Aligned_cols=90 Identities=24% Similarity=0.229 Sum_probs=84.4
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
+..|.|+||+|+..|+.++|++||+. |+ ++|.+|..|.||||+|+. .|+.+++++
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-------g~-----------------~i~~~d~~g~tpLh~A~~-~~~~~~v~~ 75 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMAN-------GA-----------------DVAAKDKNGSTPLHLAAR-NGHLEVVKL 75 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTCCCHHHHHHH-TTCHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCccCCCCCCHHHHHHH-cCCHHHHHH
Confidence 44578999999999999999999999 77 789999999999999999 999999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
|+++ |++++.+|..|.||||+|+..|+.+++++|+
T Consensus 76 Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L~ 110 (110)
T 2zgd_A 76 LLEA------GADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110 (110)
T ss_dssp HHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred HHHc------CCCccccccCCCcHHHHHHHcCCHHHHHHhC
Confidence 9999 9999999999999999999999999999873
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=145.69 Aligned_cols=95 Identities=24% Similarity=0.248 Sum_probs=89.2
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
..+.||||+||+.|+.++|++||+. |+ ++|..|..|.||||+|+. .|+.+++++|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~L 66 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN-------GA-----------------DVNAKDEYGLTPLYLATA-HGHLEIVEVL 66 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc-------CC-----------------CCCCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence 3467999999999999999999999 76 789999999999999999 9999999999
Q ss_pred hcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 836 TDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+++ |++++.+|..|.||||+|+..|+.+++++|.+++++.
T Consensus 67 l~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 106 (136)
T 2jab_A 67 LKN------GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106 (136)
T ss_dssp HHT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHc------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999 9999999999999999999999999999999987654
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-17 Score=161.89 Aligned_cols=124 Identities=9% Similarity=-0.089 Sum_probs=105.0
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCH----HHHHHHhccCCCccccccCccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSR----PLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~----eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
+.|+.|+..|+.+.++.++.... + .. .+..|.||||+|+..++. ++|++||+. |+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~----~-----~~-~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-------Ga---- 66 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY----E-----DK-ESVLKSNILYDVLRNNNDEARYKISMFLINK-------GA---- 66 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS----S-----CH-HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-------TC----
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc----c-----cc-cccCCCCHHHHHHHcCCcchHHHHHHHHHHC-------CC----
Confidence 57899999999999999987421 1 11 124588999999999985 599999999 88
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCC------HHHHHHhhcCCCCCccccccccCCCCCC-CHHHHHHHcC
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGS------EDVLDALTDDPGMVGIEAWKNARDSSGS-TPEDYARLRG 866 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~------~eVV~lLL~~p~~vg~gAdvnarD~~G~-TPLh~A~~rG 866 (988)
++|.+|..|+||||+|+. .|+ .++|++|+++ ||++|++|..|. ||||+|+..+
T Consensus 67 -------------dvn~~d~~g~TpLh~a~~-~~~~~~~~~~~iv~~Ll~~------Gadin~~d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 67 -------------DIKSRTKEGTTLFFPLFQ-GGGNDITGTTELCKIFLEK------GADITALYKPYKIVVFKNIFNYF 126 (186)
T ss_dssp -------------CSSCCCTTCCCTHHHHHH-HCTTCHHHHHHHHHHHHHT------TCCSSSCBGGGTBCTTGGGGGCC
T ss_pred -------------CCCCCCCCCCcHHHHHHH-cCCcchhhHHHHHHHHHHC------CCCCCccCCCcCchHHHHHHHcC
Confidence 899999999999999999 676 5789999999 999999999999 9999999954
Q ss_pred -----CHHHHHHHHH-hhhcCC
Q 001971 867 -----HYSYIHLVQK-KINKRP 882 (988)
Q Consensus 867 -----h~evveLL~~-k~ak~~ 882 (988)
+.+++++|.+ ++++..
T Consensus 127 ~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 127 VDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp SCHHHHHHHHHHHHTSTTCCTT
T ss_pred CChhhHHHHHHHHHHhcCCCCc
Confidence 4568999988 777654
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=146.51 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=89.2
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
+..|.||||+|++.|+.++|++||+. |+ ++|.+|..|+||||+|+. |+.+++++
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~--~~~~~v~~ 62 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEA-------GA-----------------DPNALNRFGRRPIQVMMM--GSAQVAEL 62 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CTTCCCTTCCTTTTTSTT--SCHHHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHc-------CC-----------------CcCCcCCCCCCHHHHHHc--CCHHHHHH
Confidence 45688999999999999999999999 77 889999999999999998 99999999
Q ss_pred hhcCCCCCccccccccCCCC-CCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 835 LTDDPGMVGIEAWKNARDSS-GSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~-G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
|+++ +++++.+|.. |.||||+|+..|+.+++++|.+++++.
T Consensus 63 Ll~~------g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 104 (136)
T 1d9s_A 63 LLLH------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104 (136)
T ss_dssp HHHH------TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC
T ss_pred HHHC------CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999 9999999999 999999999999999999999987654
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=157.60 Aligned_cols=97 Identities=22% Similarity=0.133 Sum_probs=90.9
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
...+.||||+|++.|+.++|++||+. |+ ++|..|..|+||||+|+. .|+.++|++
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-------g~-----------------~~~~~d~~g~tpLh~A~~-~g~~~~v~~ 72 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKE-------MN-----------------DPSQPNEEGITALHNAIC-GANYSIVDF 72 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHH-------SS-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhc-------CC-----------------CCCCCCCCCCCHHHHHHH-cCCHHHHHH
Confidence 44577999999999999999999999 77 889999999999999999 999999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|+++ |+++|.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 73 Ll~~------ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 114 (229)
T 2vge_A 73 LITA------GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114 (229)
T ss_dssp HHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred HHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 9999 99999999999999999999999999999999987643
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=136.95 Aligned_cols=93 Identities=30% Similarity=0.371 Sum_probs=87.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhc
Q 001971 758 ELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD 837 (988)
Q Consensus 758 G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~ 837 (988)
|.||||+|++.|+.++|++|++. |+ +++..+..|.||||+|+. .|+.+++++|++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-------~~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~ 56 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA-------GA-----------------DVNAKDKNGRTPLHLAAR-NGHLEVVKLLLE 56 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH-------TC-----------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHH
T ss_pred CccHHHHHHHcCcHHHHHHHHHc-------CC-----------------CCCCcCCCCCcHHHHHHH-cCcHHHHHHHHH
Confidence 78999999999999999999998 66 788899999999999999 999999999999
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 838 DPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 838 ~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+ +++++.+|..|.||||+|+..|+.+++++|.+++++.
T Consensus 57 ~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 94 (126)
T 1n0r_A 57 A------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94 (126)
T ss_dssp T------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred c------CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence 9 9999999999999999999999999999999987653
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=151.57 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=90.3
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
..|.||||+|++.|+.++|++||+. |+ ++|..|..|+||||+|+. .|+.++|++|
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~-------g~-----------------~~~~~~~~g~t~L~~A~~-~~~~~~v~~L 125 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDN-------RV-----------------GVNGLDKAGSTALYWACH-GGHKDIVEML 125 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhC-------CC-----------------CccccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence 3477999999999999999999998 77 889999999999999999 9999999999
Q ss_pred hcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 836 TDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
+++. +++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 126 l~~~-----g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 167 (222)
T 3ehr_A 126 FTQP-----NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167 (222)
T ss_dssp TTST-----TCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC
T ss_pred HcCC-----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 9874 89999999999999999999999999999999987643
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=137.18 Aligned_cols=105 Identities=24% Similarity=0.188 Sum_probs=91.3
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
..+++||+|+..++.++++.|++..++.+ . .+..|.||||+|+..|+.++|++||++ |+
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----~-----~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~----- 66 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVN----A-----RSKDGNTPLHLAAKNGHAEIVKLLLAK-------GA----- 66 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTTTCCSS----C-----CCSSSCCTTHHHHTTTCHHHHHHHTTT-------TC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC----C-----cCCCCCCHHHHHHHcCcHHHHHHHHHc-------CC-----
Confidence 45789999999999999999998644311 1 244688999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHH
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPE 859 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPL 859 (988)
++|.+|..|.||||+|+. .|+.+++++|+++ ||++|.+|..|.||-
T Consensus 67 ------------~~~~~d~~g~tpl~~A~~-~~~~~~~~~Ll~~------ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 67 ------------DVNARSKDGNTPEHLAKK-NGHHEIVKLLDAK------GADVNARSWGSSHHH 112 (115)
T ss_dssp ------------CTTCCCTTCCCTTHHHHT-TTCHHHHHHHHTT------SSSHHHHSCCCC---
T ss_pred ------------CCcccCCCCCCHHHHHHH-CCCHHHHHHHHHc------CCCCCcCCccccccc
Confidence 789999999999999999 9999999999999 999999999999985
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-16 Score=177.27 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=121.3
Q ss_pred CCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhcccc-ccCCCCC
Q 001971 673 GKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGT-VSLGEHP 750 (988)
Q Consensus 673 g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~-vd~g~~~ 750 (988)
+.+++|.+| .+.+..+.+|+.++......+ ....+..+|||+|+..|+.++|++|++..++.. ++
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~--------~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~----- 158 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVK--------VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM----- 158 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH-----
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH--------HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-----
Confidence 468999999 699999999998874110000 111245779999999999999999999643210 01
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCcc--CCCCCChHHHHHH-hhCC
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDV--IGPAGLTPIHIAA-GKDG 827 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~--~d~~G~TPLHiAA-~~~G 827 (988)
. .... .||||+|+++|+.++|++||++ |+ +++. .|..|.||||+|| . .|
T Consensus 159 -i-~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-------ga-----------------~~~~~~~d~~g~TpL~~Aa~~-~G 210 (376)
T 2aja_A 159 -I-QAEN-YHAFRLAAENGHLHVLNRLCEL-------AP-----------------TEATAMIQAENYYAFRWAAVG-RG 210 (376)
T ss_dssp -H-SHHH-HHHHHHHHHTTCHHHHHHHHHS-------CG-----------------GGHHHHHHHHHHHHHHHHHST-TC
T ss_pred -c-CCCC-CCHHHHHHHCCCHHHHHHHHHc-------CC-----------------ccchhccCCCCCCHHHHHHHH-CC
Confidence 1 0112 6999999999999999999999 76 5565 7788999999999 8 99
Q ss_pred CHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 828 SEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 828 ~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+.+||++|+++ |++ |.||||+|+..||.+++++|.+++++.
T Consensus 211 ~~eiv~~Ll~~------ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 211 HHNVINFLLDC------PVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp CHHHHHHHTTS------HHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence 99999999998 653 899999999999999999999998754
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-15 Score=161.75 Aligned_cols=143 Identities=14% Similarity=-0.020 Sum_probs=104.1
Q ss_pred cccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHc---CchHHHHHHhhhhccccccCCCCC
Q 001971 675 IDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDH---EWCAVVKKLLHILLDGTVSLGEHP 750 (988)
Q Consensus 675 ~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~---g~~aVVk~LL~~l~dg~vd~g~~~ 750 (988)
.+++.++ .+.+..+-+++..+......- .....-....++||+|+.. ++.++|++||+..++.+ .
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn----~-- 221 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPL-----PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD----A-- 221 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCE-----ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT----C--
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccC-----CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC----C--
Confidence 3467776 466666777776653211100 0000123468899999987 89999999999754321 1
Q ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHH
Q 001971 751 SLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSED 830 (988)
Q Consensus 751 ~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~e 830 (988)
.+..|.||||+|+..|+.++|++||++ |+ ++|.+|..|.||||+|+. .|+.+
T Consensus 222 ---~d~~G~TpLh~A~~~g~~~~v~~Ll~~-------ga-----------------d~~~~d~~G~TpL~~A~~-~~~~~ 273 (301)
T 2b0o_E 222 ---KAADGNTALHYAALYNQPDCLKLLLKG-------RA-----------------LVGTVNEAGETALDIARK-KHHKE 273 (301)
T ss_dssp ---CCTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CCSCCCTTSCCHHHHHHH-HTCHH
T ss_pred ---CCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----------------CCCCcCCCCCCHHHHHHH-cCCHH
Confidence 245689999999999999999999999 88 899999999999999999 99999
Q ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCH
Q 001971 831 VLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHY 868 (988)
Q Consensus 831 VV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ 868 (988)
++++|+++ +++ .|.||||+|+..||.
T Consensus 274 iv~~Ll~~------ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 274 CEELLEQA------QAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHH------HHH------TTSSCCC--------
T ss_pred HHHHHHHh------cCC------CCCChhHHHHhcCCc
Confidence 99999998 776 589999999999874
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=127.87 Aligned_cols=89 Identities=26% Similarity=0.259 Sum_probs=78.6
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.+++||+|+..++.++++.|++..++.+ . .+..|.||||+|+..|+.++|++|+++ |+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n----~-----~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------ga------ 59 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN----A-----KDKNGRTPLHLAARNGHLEVVKLLLEA-------GA------ 59 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT----C-----CCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc----c-----cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC------
Confidence 3689999999999999999999654321 1 245688999999999999999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
++|.+|..|.||||+|+. .|+.+++++|+++
T Consensus 60 -----------~~~~~d~~g~t~l~~A~~-~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 60 -----------DVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEA 90 (93)
T ss_dssp -----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT
T ss_pred -----------CCCccCCCCCCHHHHHHH-cCCHHHHHHHHHc
Confidence 889999999999999999 9999999999998
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-16 Score=172.99 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=102.5
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
+++||+|+..|+.++|+.|++....... ... .+..+.||||+|++.|+.++|++|+++ |++..
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~----~~~--~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-------gad~~---- 155 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEI----VKV--IQAENYQAFRLAAENGHLHVLNRLCEL-------APTEI---- 155 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSS----CC----CHHHHHHHHHHHHTTCHHHHHHHHHS-------CTTTH----
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHH----HHH--hccCCCCHHHHHHHcCCHHHHHHHHhC-------CCCcc----
Confidence 5899999999999999999986431100 000 122366899999999999999999999 54100
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCcccccccc--CCCCCCCHHHHHH-HcCCHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNA--RDSSGSTPEDYAR-LRGHYSYIHL 873 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvna--rD~~G~TPLh~A~-~rGh~evveL 873 (988)
.++..+.+ .||||+||. .|+.+||++|+++ |++++. +|..|.||||+|+ ..||.+++++
T Consensus 156 ----------~~~i~~~~-~TpLh~Aa~-~G~~eiv~~Ll~~------ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~ 217 (376)
T 2aja_A 156 ----------MAMIQAEN-YHAFRLAAE-NGHLHVLNRLCEL------APTEATAMIQAENYYAFRWAAVGRGHHNVINF 217 (376)
T ss_dssp ----------HHHHSHHH-HHHHHHHHH-TTCHHHHHHHHHS------CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred ----------ccccCCCC-CCHHHHHHH-CCCHHHHHHHHHc------CCccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence 02333333 999999999 9999999999999 999988 8999999999999 9999999999
Q ss_pred HHHhhhc
Q 001971 874 VQKKINK 880 (988)
Q Consensus 874 L~~k~ak 880 (988)
|.++++.
T Consensus 218 Ll~~ga~ 224 (376)
T 2aja_A 218 LLDCPVM 224 (376)
T ss_dssp HTTSHHH
T ss_pred HHhCCCc
Confidence 9987653
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=143.33 Aligned_cols=94 Identities=20% Similarity=0.115 Sum_probs=87.2
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
..|.||||+|++.|+.++|++||+. + ++|..|..|+||||+|+. .|+.++|++|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~~--------~-----------------~~~~~d~~g~t~L~~A~~-~~~~~~v~~L 95 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLED--------R-----------------DVDAVDENGRTALLFVAG-LGSDKCVRLL 95 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTT--------S-----------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhc--------C-----------------CCCCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence 3577999999999999999999973 1 788999999999999999 9999999999
Q ss_pred hcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 836 TDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 836 L~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
+++ |++++.+| ..|.||||+|+..|+.+++++|.+++++.
T Consensus 96 l~~------ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 136 (183)
T 3deo_A 96 AEA------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136 (183)
T ss_dssp HHT------TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHc------CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC
Confidence 999 99999999 89999999999999999999999998764
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=148.83 Aligned_cols=94 Identities=20% Similarity=0.120 Sum_probs=87.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhh
Q 001971 757 TELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALT 836 (988)
Q Consensus 757 ~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL 836 (988)
.|.||||+|++.|+.++|++||+. + ++|.+|..|+||||+|+. .|+.++|++|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~~--------~-----------------~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll 97 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLED--------R-----------------DVDAVDENGRTALLFVAG-LGSDKCVRLLA 97 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTTT--------C-----------------CTTCBCTTSCBHHHHHHH-HTCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHcC--------C-----------------CCCCcCCCCCCHHHHHHH-CCCHHHHHHHH
Confidence 477999999999999999999973 2 789999999999999999 99999999999
Q ss_pred cCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 837 DDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 837 ~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
++ |+++|.+| ..|.||||+|+..||.+++++|.+++++..
T Consensus 98 ~~------ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 138 (244)
T 3ui2_A 98 EA------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138 (244)
T ss_dssp HT------TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred Hc------CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99 99999999 889999999999999999999999987643
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=146.88 Aligned_cols=94 Identities=24% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCcHHHHHHHc-CCHHHHHHHhccCCCccccccCccccccccccccccccCCccCC--CCCChHHHHHHhhCCCHHHHHH
Q 001971 758 ELGLLHRAVRK-NSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIG--PAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 758 G~TpLH~AVr~-g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d--~~G~TPLHiAA~~~G~~eVV~l 834 (988)
+.|+||.|++. ++.++|++||+. |+ ++|..+ ..|.||||+|+. .|+.++|++
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~-------Ga-----------------dvn~~~~~~~g~TpLh~Aa~-~g~~~iv~~ 253 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAH-------GA-----------------DVNWVNGGQDNATPLIQATA-ANSLLACEF 253 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHT-------TC-----------------CTTCCCTTTTCCCHHHHHHH-TTCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHc-------CC-----------------CCCccccccCCCCHHHHHHH-CCCHHHHHH
Confidence 44899999999 999999999999 77 788887 899999999999 999999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|+++ ||++|.+|..|.||||+|+..||.+++++|++++++..
T Consensus 254 LL~~------Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~ 295 (368)
T 3jue_A 254 LLQN------GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295 (368)
T ss_dssp HHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHc------CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC
Confidence 9999 99999999999999999999999999999999987653
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=136.76 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=86.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhC---CCHHHHHH
Q 001971 758 ELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKD---GSEDVLDA 834 (988)
Q Consensus 758 G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~---G~~eVV~l 834 (988)
..++||.|++.|+.+.|..|+.. |++. ...+.++..+..|+||||+||. . |+.++|++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~-------g~~~-----------~~~~~l~~~~~~g~t~Lh~A~~-~~~~~~~~~v~~ 190 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYAD-------GVDL-----------TEKIPLANGHEPDETALHLAVR-SVDRTSLHIVDF 190 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------TCCT-----------TSBCCCSSCSSTTCBHHHHHHH-HCCTTTHHHHHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHh-------hcch-----------hhhccccccccCCCCcchHHHH-hcccchHHHHHH
Confidence 34799999999999999999998 5411 1111255668899999999999 7 89999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|+++ ||++|.+|..|.||||+|+..||.+++++|.+++++..
T Consensus 191 Ll~~------ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 232 (278)
T 1dcq_A 191 LVQN------SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232 (278)
T ss_dssp HHHH------CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHC------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999 99999999999999999999999999999999987654
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=116.50 Aligned_cols=87 Identities=21% Similarity=0.129 Sum_probs=76.3
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
.+.++||+|+..|+.++++.|++..++.+ . .+..|.||||+|+..|+.++|++||++ |+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~----~-----~d~~g~tpLh~A~~~~~~~~v~~Ll~~-------ga----- 81 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVA----A-----KDKNGSTPLHLAARNGHLEVVKLLLEA-------GA----- 81 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTT----C-----CCTTCCCHHHHHHHTTCHHHHHHHHHT-------TC-----
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCC----c-----cCCCCCCHHHHHHHcCCHHHHHHHHHc-------CC-----
Confidence 46889999999999999999998643211 1 244688999999999999999999999 77
Q ss_pred ccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHh
Q 001971 795 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDAL 835 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lL 835 (988)
++|.+|..|.||||+|+. .|+.+++++|
T Consensus 82 ------------~~~~~d~~g~tpl~~A~~-~~~~~~~~~L 109 (110)
T 2zgd_A 82 ------------DVXAQDKFGKTAFDISID-NGNEDLAEIL 109 (110)
T ss_dssp ------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred ------------CccccccCCCcHHHHHHH-cCCHHHHHHh
Confidence 889999999999999999 9999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 988 | ||||
| d1ul4a_ | 81 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 3e-45 | |
| d1ul5a_ | 86 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 4e-45 | |
| d1wj0a_ | 58 | g.72.1.1 (A:) Squamosa-promoter binding-like prote | 7e-33 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 2e-04 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 0.003 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 0.001 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 0.002 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 0.002 |
| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 4, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 154 bits (392), Expect = 3e-45
Identities = 54/79 (68%), Positives = 65/79 (82%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
+CQV+ C AD+ AK YHRRHKVCE+H+KAS + + QRFCQQCSRFH LQEFDE KR
Sbjct: 3 LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 62
Query: 209 SCRRRLAGHNKRRRKTNPD 227
SCRRRLAGHN+RRRK++ +
Sbjct: 63 SCRRRLAGHNERRRKSSGE 81
|
| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 7, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 154 bits (392), Expect = 4e-45
Identities = 42/81 (51%), Positives = 56/81 (69%)
Query: 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK 207
A CQV DC AD+S K YH+RH+VC + AS ++ +R+CQQC +FH+L +FDEGK
Sbjct: 2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61
Query: 208 RSCRRRLAGHNKRRRKTNPDA 228
RSCRR+L HN RR++ D
Sbjct: 62 RSCRRKLERHNNRRKRKPVDK 82
|
| >d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58 | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa-promoter binding-like protein 12, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 118 bits (298), Expect = 7e-33
Identities = 45/56 (80%), Positives = 51/56 (91%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
CQV++CGADLS KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 3 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 762 LHRAVRKNSRPLVDLLLR------------FVPLEVSDRLGSENKALVDGVHKGFLFRPD 809
LH ++ P+ D+L++ + PL V+ G+ H+ +
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327
Query: 810 VIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYS 869
G +P+H AA + G D++ L + A N S G+TP A+ G+ S
Sbjct: 328 ---KLGYSPLHQAAQQ-GHTDIVTLL------LKNGASPNEVSSDGTTPLAIAKRLGYIS 377
Query: 870 YIHLVQKKINKRPN 883
+++ ++
Sbjct: 378 VTDVLKVVTDETSF 391
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 0.003
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 31/112 (27%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHI 821
LH A P+V LL + A P+V TP+H+
Sbjct: 4 LHVASFMGHLPIVKNLL-------------QRGA-----------SPNVSNVKVETPLHM 39
Query: 822 AAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
AA + G +V L + +A NA+ TP A GH + + L
Sbjct: 40 AA-RAGHTEVAKYLLQN------KAKVNAKAKDDQTPLHCAARIGHTNMVKL 84
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 0.001
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 20/126 (15%)
Query: 762 LHRAVRKNSRPLVDLLLRFVPLEVS--DRLG---------SENKALVDGVHKGFLFR--- 807
L A K ++ +LL + +V+ D +G S + + V+ + L
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867
+V G G TP+ +A K ++ L + N DS G T A
Sbjct: 212 VNVRGERGKTPLILAVEK-KHLGLVQRLLEQEH-----IEINDTDSDGKTALLLAVELKL 265
Query: 868 YSYIHL 873
L
Sbjct: 266 KKIAEL 271
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 38.9 bits (89), Expect = 0.002
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TPI +AA ++G +V+ L + A A D++ T A+ H++ + +
Sbjct: 221 GKTPIMLAA-QEGRIEVVMYL------IQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273
Query: 875 QK 876
+
Sbjct: 274 DR 275
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/197 (13%), Positives = 51/197 (25%), Gaps = 29/197 (14%)
Query: 667 ADVERFGK-IDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMD 725
++ ++ L D +I S
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190
Query: 726 HEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV 785
A K L IL+ V P + + + +++ L
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------- 243
Query: 786 SDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIE 845
L +++ G T ++IAA + G+ ++DAL +
Sbjct: 244 ---LKWIIANMLNAQDS-----------NGDTCLNIAA-RLGNISIVDAL------LDYG 282
Query: 846 AWKNARDSSGSTPEDYA 862
A + SG P D+
Sbjct: 283 ADPFIANKSGLRPVDFG 299
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 988 | |||
| d1ul5a_ | 86 | Squamosa promoter binding protein-like 7, DNA-bind | 100.0 | |
| d1ul4a_ | 81 | Squamosa promoter binding protein-like 4, DNA-bind | 100.0 | |
| d1wj0a_ | 58 | Squamosa-promoter binding-like protein 12, DNA-bin | 99.94 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.85 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.81 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.8 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.79 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.77 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.77 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.76 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.75 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.75 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.74 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.74 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.74 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.74 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.73 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.73 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.72 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.66 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.66 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.66 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.6 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.59 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.59 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.57 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.57 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.56 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.52 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.51 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.48 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.47 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.4 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.38 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.34 |
| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 7, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.9e-38 Score=279.76 Aligned_cols=83 Identities=51% Similarity=0.950 Sum_probs=81.0
Q ss_pred CceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCcccccccCccchHHHHHhhhhhhhccCCCC
Q 001971 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD 227 (988)
Q Consensus 148 ~~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd~~krsCr~~L~~hn~rrr~~~~~ 227 (988)
++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||.||||++++
T Consensus 2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~ 81 (86)
T d1ul5a_ 2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD 81 (86)
T ss_dssp CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcC
Q 001971 228 AVA 230 (988)
Q Consensus 228 ~~~ 230 (988)
+.+
T Consensus 82 ~~g 84 (86)
T d1ul5a_ 82 KGG 84 (86)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
|
| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 4, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=8.4e-38 Score=275.14 Aligned_cols=80 Identities=68% Similarity=1.174 Sum_probs=78.3
Q ss_pred CceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCcccccccCccchHHHHHhhhhhhhccCCCC
Q 001971 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD 227 (988)
Q Consensus 148 ~~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd~~krsCr~~L~~hn~rrr~~~~~ 227 (988)
.+||||||++||+.+|+||+||+|||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||.||||+++|
T Consensus 2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~ 81 (81)
T d1ul4a_ 2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE 81 (81)
T ss_dssp CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa-promoter binding-like protein 12, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=3.4e-29 Score=207.25 Aligned_cols=56 Identities=80% Similarity=1.441 Sum_probs=55.5
Q ss_pred ceeccCCchhhccChhhhccccchhhhcCcceeeeCCcchhhhhhhccCccccccc
Q 001971 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (988)
Q Consensus 149 ~Cqv~gC~~~l~~~k~y~~R~~vC~~H~ka~~v~~~G~~~RfCQqC~rfh~l~eFd 204 (988)
+||||||++||+.+|+|||||||||.|+||++|+++|++|||||||+|||+|+|||
T Consensus 3 ~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD 58 (58)
T d1wj0a_ 3 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58 (58)
T ss_dssp ECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred eeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999998
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=3.2e-21 Score=195.05 Aligned_cols=201 Identities=18% Similarity=0.105 Sum_probs=156.7
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhh---hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADV---ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPL 713 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~---~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi 713 (988)
+.+|+++|... .....++.+++.+++...+ +..|.+++|.+| .+.+..+.+|+.++......+
T Consensus 9 G~t~Lh~A~~~--~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d----------- 75 (255)
T d1oy3d_ 9 GDTALHLAVIH--QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE----------- 75 (255)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-----------
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccc-----------
Confidence 37899998866 5666778888887764433 357899999999 588888888888764322222
Q ss_pred cccchHHHHHHHcCchHHHHHHhhhhccccccCCC-----------------------------C---------Cchhhc
Q 001971 714 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE-----------------------------H---------PSLDLA 755 (988)
Q Consensus 714 ~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~-----------------------------~---------~~l~~~ 755 (988)
...++||++|+..++.++++.|++.......+... . .....+
T Consensus 76 ~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d 155 (255)
T d1oy3d_ 76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155 (255)
T ss_dssp TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc
Confidence 23578999999999999999998753221110000 0 000123
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCc-cCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 756 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPD-VIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 756 l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN-~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
..|.||||+||+.++.++|++||+. |+ +++ ..+..|.||||+|+. .|+.++|++
T Consensus 156 ~~g~TpLh~A~~~~~~~~v~~Ll~~-------~~-----------------~~~~~~~~~g~TpL~~A~~-~~~~~~v~~ 210 (255)
T d1oy3d_ 156 YDGHTPLHVAVIHKDAEMVRLLRDA-------GA-----------------DLNKPEPTCGRTPLHLAVE-AQAASVLEL 210 (255)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHH-------TC-----------------CTTCCCTTTCCCHHHHHHH-TTCHHHHHH
T ss_pred ccCcccccccccccccccccchhcc-------cc-----------------ccccccccccccccccccc-ccHHHHHHH
Confidence 4588999999999999999999998 54 333 456789999999999 999999999
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|+++ ||+++.+|..|.||||+|+..||.+++++|.++||+.+
T Consensus 211 Ll~~------gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~ 252 (255)
T d1oy3d_ 211 LLKA------GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252 (255)
T ss_dssp HHHT------TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred HHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence 9999 99999999999999999999999999999999999765
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.9e-19 Score=180.08 Aligned_cols=189 Identities=16% Similarity=0.117 Sum_probs=139.0
Q ss_pred eeecchhhhhHHHHHHHHhhhcCcch-hhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchH
Q 001971 642 FIVAEEDVCSEIRMLESALEFNRTDA-DVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWL 719 (988)
Q Consensus 642 ~LVad~~iCsEI~~LE~~le~~a~~~-~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~l 719 (988)
+|+...+..+.++.+...+.....+. ..+..|.+++|.+| .+....+-+++........ ......++
T Consensus 5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-----------~~~~~~~~ 73 (223)
T d1uoha_ 5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----------KDDAGWSP 73 (223)
T ss_dssp SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-----------CCTTCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-----------cccccccc
Confidence 45666677788888988876554333 33667999999999 4666666666555532111 11223678
Q ss_pred HHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccc
Q 001971 720 IEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDG 799 (988)
Q Consensus 720 L~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~ 799 (988)
++.++..++.++++.|++...+. . ..+..|.||||+|+..|+.+++++|+++ |+
T Consensus 74 ~~~~~~~~~~~i~~~Ll~~~~d~----~-----~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-------g~---------- 127 (223)
T d1uoha_ 74 LHIAASAGRDEIVKALLGKGAQV----N-----AVNQNGCTPLHYAASKNRHEIAVMLLEG-------GA---------- 127 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT----T-----CCCTTCCCHHHHHHHHTCHHHHHHHHHT-------TC----------
T ss_pred ccccccccccchhHHHhccCcee----E-----eeCCCCCchhhHHHHcCCHHHHHHHHHC-------CC----------
Confidence 99999999999999999854321 1 1355688999999999999999999998 66
Q ss_pred cccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 001971 800 VHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKIN 879 (988)
Q Consensus 800 s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~a 879 (988)
++|.++..|.||||+|+. .++.+++++|++. +++++.+|..|+||||+|+..|+.+++++|.++++
T Consensus 128 -------d~~~~~~~~~t~L~~a~~-~~~~~~~~~L~~~------~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga 193 (223)
T d1uoha_ 128 -------NPDAKDHYEATAMHRAAA-KGNLKMIHILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 193 (223)
T ss_dssp -------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred -------CCCCcCCCCCccchhhhh-cCCcchhhhhccc------cceeeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence 677777777788887777 7777777777777 77777777778888888887777788777777766
Q ss_pred cC
Q 001971 880 KR 881 (988)
Q Consensus 880 k~ 881 (988)
+.
T Consensus 194 d~ 195 (223)
T d1uoha_ 194 SI 195 (223)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-19 Score=182.61 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=145.0
Q ss_pred CCcceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCcccccc
Q 001971 638 TFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRF 716 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~ 716 (988)
+.+|++.|... +.+..++.+++...........+.+..+.++ .+.+..+.+|+.++...... ....
T Consensus 37 G~TpLh~Aa~~--g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~-----------d~~g 103 (223)
T d1uoha_ 37 SRTALHWACSA--GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV-----------NQNG 103 (223)
T ss_dssp SCCHHHHHHHH--TCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-----------CTTC
T ss_pred CCCHHHHHHHh--hhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEee-----------CCCC
Confidence 37899998865 4445566666666554444445566666666 45666777777766322111 2235
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.+|||+|+..++.++++.|++..++.+ ..+..|.||||+|+..++.+++++|+.. |.
T Consensus 104 ~tpL~~A~~~~~~e~~~~Ll~~g~d~~---------~~~~~~~t~L~~a~~~~~~~~~~~L~~~-------~~------- 160 (223)
T d1uoha_ 104 CTPLHYAASKNRHEIAVMLLEGGANPD---------AKDHYEATAMHRAAAKGNLKMIHILLYY-------KA------- 160 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT---------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-------
T ss_pred CchhhHHHHcCCHHHHHHHHHCCCCCC---------CcCCCCCccchhhhhcCCcchhhhhccc-------cc-------
Confidence 789999999999999999998654321 1345688999999999999999999988 66
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..|..|.||||+||. .|+.++|++|+++ ||+++.+|.+|+||||+|+ .||.+++++|++
T Consensus 161 ----------~i~~~d~~g~TpL~~Aa~-~g~~~~v~~LL~~------Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~ 222 (223)
T d1uoha_ 161 ----------STNIQDTEGNTPLHLACD-EERVEEAKLLVSQ------GASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222 (223)
T ss_dssp ----------CSCCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred ----------eeeeccCCCCceeccccc-cCcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence 889999999999999999 9999999999999 9999999999999999995 699999998864
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=9.1e-19 Score=170.72 Aligned_cols=136 Identities=23% Similarity=0.169 Sum_probs=111.4
Q ss_pred HHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHc---CCHHHHHHHhccCCCccccccCccccc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENKA 795 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~---g~~eiVelLL~~~p~~~~~Ga~~~~~~ 795 (988)
.|+.|+..+....+..++...++..... .....+..|.||||+|++. ++.++|++||++ |+
T Consensus 9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-------ga------ 72 (154)
T d1dcqa1 9 SLCEAVKTRDIFGLLQAYADGVDLTEKI---PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-------SG------ 72 (154)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSBC---CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-------CS------
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCcCCCC---CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-------CC------
Confidence 5778888888888777776544322111 0111234588999999984 678999999999 77
Q ss_pred cccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 796 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 796 l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|.+|..|+||||+|+. .|+.++|++|+++ ||+++.+|.+|.||||+|+.+||.+++++|.
T Consensus 73 -----------din~~d~~g~TpLh~A~~-~~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~ 134 (154)
T d1dcqa1 73 -----------NLDKQTGKGSTALHYCCL-TDNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLT 134 (154)
T ss_dssp -----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------Chhhhhhhhccccccccc-ccccccccccccc------CccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999 9999999999999 9999999999999999999999999999999
Q ss_pred HhhhcCCCCCceee
Q 001971 876 KKINKRPNGGHVVV 889 (988)
Q Consensus 876 ~k~ak~~~~~~v~v 889 (988)
+.++.+. ..+..+
T Consensus 135 ~~~~~~~-~~~~~~ 147 (154)
T d1dcqa1 135 QALSGRF-NSHVHV 147 (154)
T ss_dssp HHHTTCC-CSSCCC
T ss_pred HhCCCCC-Ccchhh
Confidence 9987765 444443
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.9e-19 Score=167.92 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=105.1
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
..+||+|+.+|+.++|+.||+..++.+. .+..|.||||+|+ .|+.++|++||++ |+
T Consensus 4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~---------~~~~g~t~l~~a~-~g~~~~v~~Ll~~-------ga------- 59 (125)
T d1bi7b_ 4 ADWLATAAARGRVEEVRALLEAGANPNA---------PNSYGRRPIQVMM-MGSARVAELLLLH-------GA------- 59 (125)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTC---------CCSSSCCTTTSSC-TTCHHHHHHHHTT-------TC-------
T ss_pred hhHHHHHHHCCCHHHHHHHHHcCCcccc---------ccccccccccccc-ccccccccccccc-------cc-------
Confidence 4689999999999999999996543221 2456889999875 7999999999999 77
Q ss_pred ccccccccccCCccCCCCCC-hHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGL-TPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~-TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
++|..+..|. ||||+|+. .|+.++|++|+++ |++++.+|..|+||||+|++.||.+++++|.
T Consensus 60 ----------~~~~~~~~~~~~~L~~A~~-~g~~~~v~~Ll~~------ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll 122 (125)
T d1bi7b_ 60 ----------EPNCADPATLTRPVHDAAR-EGFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARYLR 122 (125)
T ss_dssp ----------CCCCCCTTTCCCHHHHHHH-HTCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred ----------ccccccccccccccccccc-ccccccccccccc------ccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 7888888876 69999999 9999999999999 9999999999999999999999999999986
Q ss_pred H
Q 001971 876 K 876 (988)
Q Consensus 876 ~ 876 (988)
.
T Consensus 123 s 123 (125)
T d1bi7b_ 123 A 123 (125)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=9.9e-19 Score=173.80 Aligned_cols=189 Identities=18% Similarity=0.107 Sum_probs=95.5
Q ss_pred cceeecchhhhhHHHHHHHHhhhcCcc-hhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccc
Q 001971 640 FPFIVAEEDVCSEIRMLESALEFNRTD-ADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFK 717 (988)
Q Consensus 640 fP~LVad~~iCsEI~~LE~~le~~a~~-~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k 717 (988)
+|++.|... +.+..++.+++....+ ...+..|.+++|.+| -+....+.||+++.......+.. -....
T Consensus 2 ~pLh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~--------~~~~~ 71 (229)
T d1ixva_ 2 YPLHQACME--NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------DDSGW 71 (229)
T ss_dssp CHHHHHHHH--TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCC--------CTTSC
T ss_pred HhHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccc--------ccccc
Confidence 466665543 5566666666543322 222456788888887 36677777777765322211111 11234
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
+++++++..+..++++.++......... .....+.|+|+.++..++.+++++|+.. |.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~l~~~-------~~-------- 129 (229)
T d1ixva_ 72 TPFHIACSVGNLEVVKSLYDRPLKPDLN-------KITNQGVTCLHLAVGKKWFEVSQFLIEN-------GA-------- 129 (229)
T ss_dssp CHHHHHHHHTCHHHHHHHHSSSSCCCTT-------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TC--------
T ss_pred cccccccccccccccccccccccccccc-------ccccccccccccccccchhhhhhhhhhh-------cc--------
Confidence 5666666666666666655533211110 0122244555555555555555555554 22
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~ 875 (988)
+.+..+..|.||||+|+. .|+.+++++|++.. ..+++.+|.+|+||||+|+.+|+.+++++|.
T Consensus 130 ---------~~~~~~~~g~t~l~~a~~-~~~~~~~~~Ll~~~-----~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll 192 (229)
T d1ixva_ 130 ---------SVRIKDKFNQIPLHRAAS-VGSLKLIELLCGLG-----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 192 (229)
T ss_dssp ---------CSCCCCTTSCCHHHHHHH-HTCHHHHHHHHTTT-----CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ---------cccccCCCCCCccchhhh-cccccccccccccc-----cccccccccccCCchhhhcccccHHHHHHHH
Confidence 334444455555555555 45555555555441 2344555555555555555555555555444
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.1e-19 Score=166.31 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=107.7
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
.+|+.|+..|+.++|+.|++..++.+. .+..|+||||+|+..|+.+++++|+++ |+
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~---------~d~~g~t~Lh~A~~~~~~~~~~~ll~~-------g~-------- 58 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIYEVDDPSL---------PNDEGITALHNAVCAGHTEIVKFLVQF-------GV-------- 58 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTSTTSSCCC---------CCTTSCCHHHHHHHHTCHHHHHHHHHH-------TC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCccc---------ccccccccccccccccccccccccccc-------cc--------
Confidence 589999999999999999996543221 345689999999999999999999999 77
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCC-CCCCHHHHH--HHcCCHHHHHHH
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDS-SGSTPEDYA--RLRGHYSYIHLV 874 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~-~G~TPLh~A--~~rGh~evveLL 874 (988)
++|.+|.+|+||||+|+. .|+.++|++|+++ ||+++++|. .|.||+++| ...||.+++++|
T Consensus 59 ---------~~~~~d~~g~tpLh~A~~-~g~~~~v~~Ll~~------ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L 122 (130)
T d1ycsb1 59 ---------NVNAADSDGWTPLHCAAS-CNNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122 (130)
T ss_dssp ---------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred ---------ccccccccCcccccccch-hhHHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence 889999999999999999 9999999999999 999999885 699998776 567999999999
Q ss_pred HHhhhc
Q 001971 875 QKKINK 880 (988)
Q Consensus 875 ~~k~ak 880 (988)
.....+
T Consensus 123 ~~~~~~ 128 (130)
T d1ycsb1 123 YGVQEK 128 (130)
T ss_dssp HHHHHH
T ss_pred HhHHHh
Confidence 887654
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.8e-18 Score=174.61 Aligned_cols=188 Identities=16% Similarity=0.071 Sum_probs=136.4
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCC
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE 748 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~ 748 (988)
+++|.+++|.+| -+....+-+|+.++......+ .+....+||||+|+..|+.++|++||+..++.+
T Consensus 6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~--------~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~----- 72 (255)
T d1oy3d_ 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------LQNDLGQTALHLAAILGEASTVEKLYAAGAGVL----- 72 (255)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGG--------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-----
T ss_pred CcCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc--------CcCCCCCCccchHHhhccccccccccccccccc-----
Confidence 467999999999 477778888887664211111 122335789999999999999999999654321
Q ss_pred CCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccc------------c-----------ccccccccc
Q 001971 749 HPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA------------L-----------VDGVHKGFL 805 (988)
Q Consensus 749 ~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~------------l-----------~~~s~~~y~ 805 (988)
..+..|.||||+|+..++.+++++|++.......+........ . .......+.
T Consensus 73 ----~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (255)
T d1oy3d_ 73 ----VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148 (255)
T ss_dssp ----CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred ----ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcC
Confidence 1345688999999999999999999987422110000000000 0 000111223
Q ss_pred cCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccC-CCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 806 FRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNAR-DSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 806 fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnar-D~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
.+.|.++..|.||||+|+. .|+.++|++|++. +++.+.. +..|.||||+|++.|+.+++++|.+++++.
T Consensus 149 ~~in~~d~~g~TpLh~A~~-~~~~~~v~~Ll~~------~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi 218 (255)
T d1oy3d_ 149 LQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218 (255)
T ss_dssp GGTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccccccccCccccccccc-ccccccccchhcc------cccccccccccccccccccccccHHHHHHHHHHCCCCC
Confidence 5678899999999999999 9999999999998 8887764 678999999999999999999999987654
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.6e-18 Score=181.03 Aligned_cols=64 Identities=27% Similarity=0.349 Sum_probs=61.2
Q ss_pred CCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 807 RPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 807 dpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
++|.+|..|+||||+|+. .|+.++|++|+++ ||++|++|.+|.||||+|+++||.++|++|...
T Consensus 322 ~in~~d~~G~T~Lh~A~~-~g~~~iv~~Ll~~------GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~ 385 (408)
T d1n11a_ 322 DVNAKTKLGYSPLHQAAQ-QGHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385 (408)
T ss_dssp CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 789999999999999999 9999999999999 999999999999999999999999999998554
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.9e-19 Score=166.65 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=95.5
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
.+||++|+.+|+.++|+.|++..++.+ . .+..|+||||+|+..|+.+++++|+++ |+
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n----~-----~~~~g~t~lh~A~~~~~~~~~~~ll~~-------g~------- 59 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVAKGEDVN----R-----TLEGGRKPLHYAADCGQLEILEFLLLK-------GA------- 59 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTCCCC----C-----CSSSSCCTTHHHHHHSTTTHHHHHHHS-------SC-------
T ss_pred ChHHHHHHHCCCHHHHHHHHHhhhccc----c-----ccccccccccccccccccccccccccc-------cc-------
Confidence 369999999999999999998654321 1 245688999999999999999999999 77
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYAR 863 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~ 863 (988)
++|.+|..|+||||+|+. .|+.++|++|+++ ||+++.+|..|.||||+|.
T Consensus 60 ----------din~~d~~g~tpLh~A~~-~~~~~~v~~Ll~~------Gad~~~~d~~G~t~l~~a~ 109 (118)
T d1myoa_ 60 ----------DINAPDKHHITPLLSAVY-EGHVSCVKLLLSK------GADKTVKGPDGLTALEATD 109 (118)
T ss_dssp ----------TTTCCSSSCSCHHHHHHT-TTCCHHHHHHHTT------CCCSSSSSSSTCCCCCTCS
T ss_pred ----------eeeecccccccchhhhhh-cCchhhhhhhhcc------cccceeeCCCCCCHHHHHh
Confidence 889999999999999999 9999999999999 9999999999999999984
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.75 E-value=1.5e-18 Score=178.54 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=66.4
Q ss_pred cceeecchhhhhHHHHHHHHhhhcCcchhhhhcCCcccHHHHH-HHHHHHhHhhcccccccccCCCCCCCCCccccccch
Q 001971 640 FPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAM-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKW 718 (988)
Q Consensus 640 fP~LVad~~iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~ 718 (988)
.|+|.|... +.++.++.+++.|++....+.+|.+++|.++. +.+..+.+|+.+........ ....+
T Consensus 42 t~l~~A~~~--G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~-----------~~~~~ 108 (291)
T d1s70b_ 42 AVFLAACSS--GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-----------NEGWI 108 (291)
T ss_dssp HHHHHHHHH--TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------TTSCC
T ss_pred hHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccc-----------ccccc
Confidence 466666544 88999999999998766556789999999994 77888889988764211111 12367
Q ss_pred HHHHHHHcCchHHHHHHhhhhc
Q 001971 719 LIEFSMDHEWCAVVKKLLHILL 740 (988)
Q Consensus 719 lL~~Ave~g~~aVVk~LL~~l~ 740 (988)
+|++|+..++.++++.|++...
T Consensus 109 ~L~~a~~~~~~~~~~~l~~~~~ 130 (291)
T d1s70b_ 109 PLHAAASCGYLDIAEYLISQGA 130 (291)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred cccccccccccchhhcccccCc
Confidence 9999999999999999998643
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-17 Score=168.49 Aligned_cols=226 Identities=14% Similarity=-0.022 Sum_probs=153.0
Q ss_pred hhhhhHHHHHHHHhhhcCcchhh-hhcCCcccHHHHH-HHHHHHhHhhcccccccccCCCC-------------------
Q 001971 647 EDVCSEIRMLESALEFNRTDADV-ERFGKIDTKNQAM-DFIHEIGWLFHRSQSKSRLGHLD------------------- 705 (988)
Q Consensus 647 ~~iCsEI~~LE~~le~~a~~~~~-~~~g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~~~d------------------- 705 (988)
+...+.++.++.+++.|++.... +..|.+++|.+|. +....+.+|+.............
T Consensus 12 Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (285)
T d1wdya_ 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchh
Confidence 44558888999999988765433 3468889998773 55555555555543211110000
Q ss_pred --CCC-CCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCC-CchhhccCCCcHHHHHHHcCCHHHHHHHhccC
Q 001971 706 --PNT-DLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEH-PSLDLALTELGLLHRAVRKNSRPLVDLLLRFV 781 (988)
Q Consensus 706 --~~~-~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~-~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~ 781 (988)
... .........+.|++|+..++..+++.++....+........ ........|.||||+|+++|+.+++++||+..
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 171 (285)
T d1wdya_ 92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171 (285)
T ss_dssp HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred hhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence 000 00111224568999999999999988887654333221111 11112445889999999999999999999752
Q ss_pred CCccccccCcccc----------ccccccccc----------cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCC
Q 001971 782 PLEVSDRLGSENK----------ALVDGVHKG----------FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGM 841 (988)
Q Consensus 782 p~~~~~Ga~~~~~----------~l~~~s~~~----------y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~ 841 (988)
|++.+.+ ....+.... ...++|.++..|.||||+|+. .|+.++|++|++..
T Consensus 172 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~-~~~~~~v~~lL~~~-- 242 (285)
T d1wdya_ 172 ------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE-KKHLGLVQRLLEQE-- 242 (285)
T ss_dssp ------CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH-TTCHHHHHHHHHSS--
T ss_pred ------CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh-cCcHHHHHHHHHcC--
Confidence 2211110 111111111 113678899999999999999 99999999999753
Q ss_pred CccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCCCC
Q 001971 842 VGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNG 884 (988)
Q Consensus 842 vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~~~ 884 (988)
++++|.+|.+|.||||+|++.||.+++++|.++||+...+
T Consensus 243 ---g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~ 282 (285)
T d1wdya_ 243 ---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp ---SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred ---CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence 8999999999999999999999999999999999997644
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.1e-18 Score=161.23 Aligned_cols=150 Identities=23% Similarity=0.248 Sum_probs=121.3
Q ss_pred ccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhh
Q 001971 676 DTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDL 754 (988)
Q Consensus 676 ~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~ 754 (988)
.++.+| -+.+..+.++|+.... ++. ..-....+|||+|+. ++.++++.||+...+.+ . .
T Consensus 5 ~L~~Aa~~g~~~~vk~lL~~~~~-------~~n---~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~----~-----~ 64 (156)
T d1bd8a_ 5 RLSGAAARGDVQEVRRLLHRELV-------HPD---ALNRFGKTALQVMMF-GSTAIALELLKQGASPN----V-----Q 64 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-------CTT---CCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTT----C-----C
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC-------CCC---ccCCCCCcccccccc-ccccccccccccccccc----c-----c
Confidence 366777 4788888888876421 100 111235789999875 77899999998644321 1 2
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDA 834 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~l 834 (988)
...|.+||+.|+..++.++++++++. |+ ++|.+|..|.||||+|+. .|+.+++++
T Consensus 65 ~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~-----------------~~n~~~~~~~t~L~~A~~-~~~~~i~~~ 119 (156)
T d1bd8a_ 65 DTSGTSPVHDAARTGFLDTLKVLVEH-------GA-----------------DVNVPDGTGALPIHLAVQ-EGHTAVVSF 119 (156)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHT-------TC-----------------CSCCCCTTSCCHHHHHHH-HTCHHHHHH
T ss_pred cccccccccccccccccccccccccc-------cc-----------------ccccccCCCCeeeccccc-ccccccccc
Confidence 34578999999999999999999999 66 789999999999999999 999999998
Q ss_pred hhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 835 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 835 LL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
|+ . +++++.+|.+|+||||+|+.+||.+++++|+++
T Consensus 120 L~-~------~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h 155 (156)
T d1bd8a_ 120 LA-A------ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HH-T------TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cc-c------cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence 88 6 789999999999999999999999999999864
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.74 E-value=2.7e-18 Score=174.28 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=148.6
Q ss_pred CCcceeecch----hhhhHHH--HHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCC
Q 001971 638 TFFPFIVAEE----DVCSEIR--MLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDL 710 (988)
Q Consensus 638 ~ffP~LVad~----~iCsEI~--~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l 710 (988)
+.+|+++|.. +++..+- ..+..++.|++....+..|.+++|.+| .+.+.-+.|||.++......+
T Consensus 33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~-------- 104 (277)
T d2fo1e1 33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-------- 104 (277)
T ss_dssp CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC--------
T ss_pred CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccc--------
Confidence 3678888763 4444431 224456677766656678999999999 588888899998874322222
Q ss_pred ccccccchHHHHHHHcCchHHHHHHhhhhccc-ccc---CCCC----------------------------------Cch
Q 001971 711 FPLRRFKWLIEFSMDHEWCAVVKKLLHILLDG-TVS---LGEH----------------------------------PSL 752 (988)
Q Consensus 711 ~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg-~vd---~g~~----------------------------------~~l 752 (988)
...+++|++|+..++..+++.++...... .++ .... ...
T Consensus 105 ---~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (277)
T d2fo1e1 105 ---KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 181 (277)
T ss_dssp ---TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred ---ccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence 23578999999999999998887643110 000 0000 000
Q ss_pred hhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHH
Q 001971 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVL 832 (988)
Q Consensus 753 ~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV 832 (988)
..+..|+|+||+|+..++.+++++++... |. +.+.+|..|+||||+|+. .|+.++|
T Consensus 182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~------~~-----------------~~~~~d~~g~tpL~~A~~-~g~~~iv 237 (277)
T d2fo1e1 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEK------GS-----------------NKDKQDEDGKTPIMLAAQ-EGRIEVV 237 (277)
T ss_dssp SSSCCCCCTHHHHHSSCCHHHHHHHHHHS------CC-----------------CTTCCCTTCCCHHHHHHH-HTCHHHH
T ss_pred ccccCCCCccccccccccccccccccccc------cc-----------------cccccCCCCCCHHHHHHH-cCCHHHH
Confidence 11235789999999999999999877652 33 678889999999999999 9999999
Q ss_pred HHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 833 DALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 833 ~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|+++ ||++|++|.+|.||||+|+++||.+++++|.+
T Consensus 238 ~~Ll~~------gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~ 275 (277)
T d2fo1e1 238 MYLIQQ------GASVEAVDATDHTARQLAQANNHHNIVDIFDR 275 (277)
T ss_dssp HHHHHT------TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHC------cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999 99999999999999999999999999999985
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1e-17 Score=157.31 Aligned_cols=140 Identities=14% Similarity=-0.006 Sum_probs=91.3
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
++|+.|+..|+.++|+.||+..++.. .+..|.||||+|+..++.++++.++........... ....+++
T Consensus 4 t~L~~Aa~~g~~~~v~~LL~~ga~~~----------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 72 (153)
T d1awcb_ 4 KKLLEAARAGQDDEVRILMANGAPFT----------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLH 72 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC----------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCcc----------cccCCCcccccccccccccccccccccccccccccc-ccccccc
Confidence 55666666666666666665432110 123355666666666666666665555222100000 0000000
Q ss_pred ccc----------ccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCC
Q 001971 798 DGV----------HKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867 (988)
Q Consensus 798 ~~s----------~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh 867 (988)
... -..+..+++.+|..|.||||+|+. .|+.++|++|+++ |++++.+|..|.||||+|+..||
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~-~g~~~iv~~ll~~------gad~~~~d~~g~Tpl~~A~~~g~ 145 (153)
T d1awcb_ 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKY------GADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cccccccceeeecccccCCccccccccCchHHHhhhh-cchhheeeecccc------ccCCcccCCCCCCHHHHHHHcCC
Confidence 000 000113678899999999999999 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHH
Q 001971 868 YSYIHLVQ 875 (988)
Q Consensus 868 ~evveLL~ 875 (988)
.+++++|+
T Consensus 146 ~eiv~lL~ 153 (153)
T d1awcb_ 146 EDLAEILQ 153 (153)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCc
Confidence 99999884
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=2.4e-17 Score=161.39 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=122.9
Q ss_pred HHHHhhhcCcchh-hhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCC----------------------CC-CC
Q 001971 656 LESALEFNRTDAD-VERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDP----------------------NT-DL 710 (988)
Q Consensus 656 LE~~le~~a~~~~-~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~----------------------~~-~l 710 (988)
+..+++.|++... .+..|.+++|.+| .+.+..+.||+..+......+.... .. ..
T Consensus 5 v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (209)
T d1ot8a_ 5 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 84 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTT
T ss_pred HHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 3445666665433 3567888888888 4777777777776532221111100 00 00
Q ss_pred ccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccC
Q 001971 711 FPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLG 790 (988)
Q Consensus 711 ~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~ 790 (988)
..........+.+.......+.+.|+....+ . ...+..|.|+||+|+..+...+++.|+.. +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~-----~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-------~~- 147 (209)
T d1ot8a_ 85 ARMHDGTTPLILAARLAIEGMVEDLITADAD----I-----NAADNSGKTALHWAAAVNNTEAVNILLMH-------HA- 147 (209)
T ss_dssp CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC----T-----TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-------TC-
T ss_pred cccccccccccccccccchhhhhhhhhhccc----c-----cccCCCCCCcchhhcccCcceeeeeeccc-------cc-
Confidence 0000112233444444444444444442111 0 01244578999999999999999999999 55
Q ss_pred ccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHH
Q 001971 791 SENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSY 870 (988)
Q Consensus 791 ~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~ev 870 (988)
++|..|..|.||||+||. .|+.++|++|+++ ||+++.+|..|+||||+|+++||.++
T Consensus 148 ----------------~~~~~d~~g~TpL~~A~~-~g~~~~v~~Ll~~------gad~n~~d~~g~Tpl~~A~~~~~~~i 204 (209)
T d1ot8a_ 148 ----------------NRDAQDDKDETPLFLAAR-EGSYEASKALLDN------FANREITDHMDRLPRDVASERLHHDI 204 (209)
T ss_dssp ----------------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------cccccccccccccchhcc-ccHHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 788999999999999999 9999999999999 99999999999999999999999999
Q ss_pred HHHH
Q 001971 871 IHLV 874 (988)
Q Consensus 871 veLL 874 (988)
|++|
T Consensus 205 v~lL 208 (209)
T d1ot8a_ 205 VRLL 208 (209)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9987
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.8e-18 Score=173.00 Aligned_cols=174 Identities=13% Similarity=-0.030 Sum_probs=135.5
Q ss_pred hcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhc
Q 001971 662 FNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILL 740 (988)
Q Consensus 662 ~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~ 740 (988)
.++.....+..|++++|.+| -+....+.||+.++......+ ....++|++|+.++...+++.|+....
T Consensus 28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d-----------~~g~t~l~~~~~~~~~~~~~~l~~~~~ 96 (221)
T d1iknd_ 28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-----------FRGNTPLHLACEQGCLASVGVLTQSCT 96 (221)
T ss_dssp -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-----------TTCCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred CCCCcccCCCCCCccccccccccccccccccccccccccccc-----------cccccccccccccccccccchhhhhcc
Confidence 34443333567999999999 578888888888764222221 234689999999999999999998654
Q ss_pred cccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCcc-CCCCCChHH
Q 001971 741 DGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDV-IGPAGLTPI 819 (988)
Q Consensus 741 dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~-~d~~G~TPL 819 (988)
..... .........|.||||.|+..++.+++++|+.. |+ ..+. .+..|.|||
T Consensus 97 ~~~~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~-----------------~~~~~~~~~G~T~L 149 (221)
T d1iknd_ 97 TPHLH---SILKATNYNGHTCLHLASIHGYLGIVELLVSL-------GA-----------------DVNAQEPCNGRTAL 149 (221)
T ss_dssp TTSSS---CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-------TC-----------------CTTCCCTTTCCCHH
T ss_pred ccccc---ccccccccccchhhhHHhhcCChhheeeeccc-------Cc-----------------ccccccccCCCCcc
Confidence 32211 11111234578999999999999999999988 55 3444 346799999
Q ss_pred HHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 820 HIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 820 HiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
|+|+. .|+.++|++|+++ |||++++|..|+||||+|+.+++.+++++|.+...+
T Consensus 150 ~~A~~-~g~~~~v~~Ll~~------gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~ 203 (221)
T d1iknd_ 150 HLAVD-LQNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203 (221)
T ss_dssp HHHHH-TTCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred ccccc-cccHHHHHHHHhc------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence 99999 9999999999999 999999999999999999999999999999888654
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.2e-17 Score=155.46 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=122.4
Q ss_pred cccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchh
Q 001971 675 IDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLD 753 (988)
Q Consensus 675 ~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~ 753 (988)
.++|.+| -+.+..+-+|++++......+ ....+|||+|+ .++.+++++||+..++.. .
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d-----------~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~---------~ 61 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQNNVNVNAQN-----------GFGRTALQVMK-LGNPEIARRLLLRGANPD---------L 61 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTTCCC-----------TTSCCHHHHCC-SSCHHHHHHHHHTTCCTT---------C
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCcCccC-----------Ccccccccccc-cccccccccccccccccc---------c
Confidence 3578888 488888888888764322221 23578998876 688899999888543211 1
Q ss_pred hccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHH
Q 001971 754 LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLD 833 (988)
Q Consensus 754 ~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~ 833 (988)
.+..+.++|+.++..++.++++.|+++ +. +++..+..|.||||+|+. .|+.++++
T Consensus 62 ~~~~~~~~l~~~~~~~~~~~~~~l~~~-------~~-----------------~~~~~~~~~~~~l~~a~~-~~~~~~~~ 116 (156)
T d1ihba_ 62 KDRTGFAVIHDAARAGFLDTLQTLLEF-------QA-----------------DVNIEDNEGNLPLHLAAK-EGHLRVVE 116 (156)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT-------TC-----------------CTTCCCTTSCCHHHHHHH-TTCHHHHH
T ss_pred ccccCcccccccccccccccccccccc-------cc-----------------cccccccccccccccccc-cccccccc
Confidence 234577899999999999999999888 44 678889999999999999 99999999
Q ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 834 ALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 834 lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
+|+++. +.+.+.+|..|+||||+|++.||.+++++|+++|
T Consensus 117 ~Ll~~~-----~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G 156 (156)
T d1ihba_ 117 FLVKHT-----ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156 (156)
T ss_dssp HHHHHS-----CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred cccccc-----cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999982 3489999999999999999999999999999875
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.8e-17 Score=154.28 Aligned_cols=93 Identities=22% Similarity=0.183 Sum_probs=88.6
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 759 LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 759 ~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
+++||.|++.|+.++|++||+. |+ +||.+|.+|+||||+|+. .|+.+++++|+++
T Consensus 2 l~lL~~A~~~G~~~~v~~Ll~~-------g~-----------------d~n~~d~~g~t~Lh~A~~-~~~~~~~~~ll~~ 56 (130)
T d1ycsb1 2 LALLLDSSLEGEFDLVQRIIYE-------VD-----------------DPSLPNDEGITALHNAVC-AGHTEIVKFLVQF 56 (130)
T ss_dssp HHHHHHHHHHTCHHHHHHHTST-------TS-----------------SCCCCCTTSCCHHHHHHH-HTCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHHc-------CC-----------------Cccccccccccccccccc-ccccccccccccc
Confidence 3789999999999999999999 87 899999999999999999 9999999999999
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 839 PGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 839 p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
|++++.+|.+|+||||+|+..||.+++++|.+++++..
T Consensus 57 ------g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~ 94 (130)
T d1ycsb1 57 ------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 94 (130)
T ss_dssp ------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ------ccccccccccCcccccccchhhHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999987654
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=6.3e-17 Score=154.91 Aligned_cols=191 Identities=18% Similarity=0.145 Sum_probs=129.0
Q ss_pred CCcceeecchhhhhHHHHHHH----HhhhcCcchhhhhcCCcccHHHHH-HHHHHHhHhhcccccccccCCCCCCCCCcc
Q 001971 638 TFFPFIVAEEDVCSEIRMLES----ALEFNRTDADVERFGKIDTKNQAM-DFIHEIGWLFHRSQSKSRLGHLDPNTDLFP 712 (988)
Q Consensus 638 ~ffP~LVad~~iCsEI~~LE~----~le~~a~~~~~~~~g~~~lh~~am-~fL~EIGWLLqr~~~~~~~~~~d~~~~l~q 712 (988)
+.+|+++|.+. +.+..++. ..+.++.....+..|.+++|.+|. +....+.+|+.++.......
T Consensus 3 G~TpLh~A~~~--g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~---------- 70 (228)
T d1k1aa_ 3 GDTPLHIAVVQ--GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---------- 70 (228)
T ss_dssp TCCHHHHHHHT--TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------
T ss_pred CccHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccc----------
Confidence 36788887754 33333333 334555544445678889999884 66666777777664222111
Q ss_pred ccccchHHHHHHHcCchHHHHHHhhhhccccccCCC-----------------------------CCchhhccCCCcHHH
Q 001971 713 LRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE-----------------------------HPSLDLALTELGLLH 763 (988)
Q Consensus 713 i~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~-----------------------------~~~l~~~l~G~TpLH 763 (988)
....+++++|...+...+++.+............. .........+.++||
T Consensus 71 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 149 (228)
T d1k1aa_ 71 -RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 149 (228)
T ss_dssp -TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred -cccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence 11234666666666666665554432211100000 000011234678999
Q ss_pred HHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCc
Q 001971 764 RAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVG 843 (988)
Q Consensus 764 ~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg 843 (988)
.|++.+...+++.+++. |. .++.+|..|.||||+|+. .|+.++|++|+++
T Consensus 150 ~a~~~~~~~~~~~~~~~-------~~-----------------~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~----- 199 (228)
T d1k1aa_ 150 HAVENNSLSMVQLLLQH-------GA-----------------NVNAQMYSGSSALHSASG-RGLLPLVRTLVRS----- 199 (228)
T ss_dssp HHHHTTCHHHHHHHHHT-------TC-----------------CTTCBCTTSCBHHHHHHH-HTCHHHHHHHHHT-----
T ss_pred HHHHhhhhhhhhhhhhh-------cc-----------------ccccccccCcchHHHHHH-cCCHHHHHHHHHC-----
Confidence 99999999999999888 55 678888999999999999 8999999999999
Q ss_pred cccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 844 IEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 844 ~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
|||+|++|.+|.||||+|+++||.++|+
T Consensus 200 -Gad~n~~d~~G~TpL~~A~~~~~~divk 227 (228)
T d1k1aa_ 200 -GADSSLKNCHNDTPLMVARSRRVIDILR 227 (228)
T ss_dssp -TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred -CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence 9999999999999999999999988874
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=6.2e-16 Score=153.34 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=127.0
Q ss_pred cccHHHHH-HHHHHHhHhhcccc-cccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCch
Q 001971 675 IDTKNQAM-DFIHEIGWLFHRSQ-SKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752 (988)
Q Consensus 675 ~~lh~~am-~fL~EIGWLLqr~~-~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l 752 (988)
+++|.+|+ +.+..+.+||.... .....+ ..+++|||+|+..|..++|+.||+.+++.+.. .
T Consensus 2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-----------~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~------~ 64 (229)
T d1ixva_ 2 YPLHQACMENEFFKVQELLHSKPSLLLQKD-----------QDGRIPLHWSVSFQAHEITSFLLSKMENVNLD------D 64 (229)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-----------TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG------G
T ss_pred HhHHHHHHcCCHHHHHHHHHcCCCcccccC-----------CCCCCHHHHHHHcCCccccchhhhhhcccccc------c
Confidence 57899994 77888888887542 111111 23688999999999999999999965532211 1
Q ss_pred hhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHH
Q 001971 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVL 832 (988)
Q Consensus 753 ~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV 832 (988)
..+..|.+++|+|+..+..++++.++.. +. .......+..+.|||+.++. .++.+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 121 (229)
T d1ixva_ 65 YPDDSGWTPFHIACSVGNLEVVKSLYDR-------PL---------------KPDLNKITNQGVTCLHLAVG-KKWFEVS 121 (229)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHSS-------SS---------------CCCTTCCCTTSCCHHHHHHH-TTCHHHH
T ss_pred cccccccccccccccccccccccccccc-------cc---------------cccccccccccccccccccc-cchhhhh
Confidence 1244588999999999999999999888 33 11345567789999999999 9999999
Q ss_pred HHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001971 833 DALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 878 (988)
Q Consensus 833 ~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ 878 (988)
.+|++. +.+.+.+|..|.||||+|+.+|+.+++++|.+.+
T Consensus 122 ~~l~~~------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 161 (229)
T d1ixva_ 122 QFLIEN------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 161 (229)
T ss_dssp HHHHHT------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred hhhhhh------cccccccCCCCCCccchhhhcccccccccccccc
Confidence 999999 8999999999999999999999999999998875
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.8e-17 Score=150.94 Aligned_cols=91 Identities=24% Similarity=0.172 Sum_probs=87.3
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
|||++|+++|+.++|++||+. |+ ++|.++..|+||||+|+. .|+.+++++|+++
T Consensus 4 tpL~~A~~~g~~~~v~~Ll~~-------g~-----------------d~n~~~~~g~t~lh~A~~-~~~~~~~~~ll~~- 57 (118)
T d1myoa_ 4 KEFMWALKNGDLDEVKDYVAK-------GE-----------------DVNRTLEGGRKPLHYAAD-CGQLEILEFLLLK- 57 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT-------TC-----------------CCCCCSSSSCCTTHHHHH-HSTTTHHHHHHHS-
T ss_pred hHHHHHHHCCCHHHHHHHHHh-------hh-----------------cccccccccccccccccc-ccccccccccccc-
Confidence 899999999999999999999 77 899999999999999999 8999999999999
Q ss_pred CCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 840 GMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 840 ~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
|+++|.+|..|+||||+|+.+|+.+++++|.+++++.
T Consensus 58 -----g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~ 94 (118)
T d1myoa_ 58 -----GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94 (118)
T ss_dssp -----SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCS
T ss_pred -----cceeeecccccccchhhhhhcCchhhhhhhhcccccc
Confidence 9999999999999999999999999999999988754
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.66 E-value=5.8e-16 Score=159.02 Aligned_cols=178 Identities=16% Similarity=0.012 Sum_probs=133.3
Q ss_pred CcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCch
Q 001971 674 KIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752 (988)
Q Consensus 674 ~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l 752 (988)
.++++.+| -+.+..+-+||.++......+ .-..+|||+|+.+|+.++|++|++...+...
T Consensus 41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d-----------~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~-------- 101 (291)
T d1s70b_ 41 GAVFLAACSSGDTEEVLRLLERGADINYAN-----------VDGLTALHQACIDDNVDMVKFLVENGANINQ-------- 101 (291)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-----------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCccC-----------CCCCcHHHHHHhcCCceeeeeeccccccccc--------
Confidence 45678888 589999999998874322222 2257899999999999999999996543211
Q ss_pred hhccCCCcHHHHHHHcCCHHHHHHHhccCCCcc---ccccCccccccccccccc--------------------------
Q 001971 753 DLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV---SDRLGSENKALVDGVHKG-------------------------- 803 (988)
Q Consensus 753 ~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~---~~Ga~~~~~~l~~~s~~~-------------------------- 803 (988)
....+.+|||.|+..++.++++.|+++..... .+|. .++..+...+
T Consensus 102 -~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 176 (291)
T d1s70b_ 102 -PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD----TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176 (291)
T ss_dssp -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC----CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -ccccccccccccccccccchhhcccccCcccccccccCc----cccccccccccchhcccccccccccccccccccccc
Confidence 13346799999999999999999998742211 0111 1111000000
Q ss_pred -----------cccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHH
Q 001971 804 -----------FLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 804 -----------y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evve 872 (988)
........+..|.||||+|+. .|+.++++.|++. |+++|.+|..|+||||+|+..||.++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~-~~~~~~~~~Ll~~------g~din~~~~~g~TpL~~A~~~g~~~iv~ 249 (291)
T d1s70b_ 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACR 249 (291)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH-HTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred ccccchhhhcccccccccccCCCCChhhHHHH-cCChhhhcccccc------eecccccccCCCCHHHHHHHcCCHHHHH
Confidence 012345567889999999999 8999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhcCC
Q 001971 873 LVQKKINKRP 882 (988)
Q Consensus 873 LL~~k~ak~~ 882 (988)
+|.+++++..
T Consensus 250 lLl~~Gadv~ 259 (291)
T d1s70b_ 250 ILVENLCDME 259 (291)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 9999988654
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-15 Score=160.86 Aligned_cols=194 Identities=19% Similarity=0.188 Sum_probs=139.9
Q ss_pred hhhHHHHHHHHhhhcCcchhhhhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCC----------------------
Q 001971 649 VCSEIRMLESALEFNRTDADVERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLD---------------------- 705 (988)
Q Consensus 649 iCsEI~~LE~~le~~a~~~~~~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d---------------------- 705 (988)
.+...+.++.+++.+......+..+.+++|.++ -+.+..+.+|++++......+...
T Consensus 141 ~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~ 220 (408)
T d1n11a_ 141 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220 (408)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhc
Confidence 345566666666666555444445566666666 344555556555543211111000
Q ss_pred CCCCCccccccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcc
Q 001971 706 PNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV 785 (988)
Q Consensus 706 ~~~~l~qi~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~ 785 (988)
............++|++|+..++.++++.++......+ ..+..|.||||.|++.++.+++++|+++
T Consensus 221 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~l~~a~~~~~~~i~~~Ll~~----- 286 (408)
T d1n11a_ 221 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---------LGNKSGLTPLHLVAQEGHVPVADVLIKH----- 286 (408)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT---------CCCTTCCCHHHHHHHHTCHHHHHHHHHH-----
T ss_pred cccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc---------cccCCCCChhhhhhhcCcHHHHHHHHHC-----
Confidence 00001112234678888888888888888877432211 1234578999999999999999999998
Q ss_pred ccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHc
Q 001971 786 SDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 865 (988)
Q Consensus 786 ~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~r 865 (988)
|+ +++..+..+.||||+|+. .++.++++.|++. |+++|.+|.+|.||||+|++.
T Consensus 287 --g~-----------------~~~~~~~~~~t~L~~~~~-~~~~~~~~~ll~~------g~~in~~d~~G~T~Lh~A~~~ 340 (408)
T d1n11a_ 287 --GV-----------------MVDATTRMGYTPLHVASH-YGNIKLVKFLLQH------QADVNAKTKLGYSPLHQAAQQ 340 (408)
T ss_dssp --TC-----------------CTTCCCSSCCCHHHHHHH-SSCSHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred --CC-----------------ccccccccccccchhhcc-cCcceeeeeeccc------cccccccCCCCCCHHHHHHHc
Confidence 77 788899999999999999 9999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCC
Q 001971 866 GHYSYIHLVQKKINKRP 882 (988)
Q Consensus 866 Gh~evveLL~~k~ak~~ 882 (988)
|+.+++++|.+++++..
T Consensus 341 g~~~iv~~Ll~~GAd~n 357 (408)
T d1n11a_ 341 GHTDIVTLLLKNGASPN 357 (408)
T ss_dssp TCHHHHHHHHHTTCCSC
T ss_pred CCHHHHHHHHHCCCCCC
Confidence 99999999999998754
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.6e-15 Score=145.05 Aligned_cols=155 Identities=17% Similarity=0.107 Sum_probs=114.6
Q ss_pred cchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcc---ccccCcc
Q 001971 716 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV---SDRLGSE 792 (988)
Q Consensus 716 ~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~---~~Ga~~~ 792 (988)
+.||||+|+..|+.++|+.|++.+.+.+++.+. .+..|+||||+|+..|+.++|++||++..... .+|..+.
T Consensus 3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~-----~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~ 77 (228)
T d1k1aa_ 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-----YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 77 (228)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc-----cCCCCCccceehhccccccccccccccccccccccccccccc
Confidence 478999999999999999999877654444322 34568999999999999999999999842211 1111000
Q ss_pred cccccc------------c-------ccccc-------------------------ccCCccCCCCCChHHHHHHhhCCC
Q 001971 793 NKALVD------------G-------VHKGF-------------------------LFRPDVIGPAGLTPIHIAAGKDGS 828 (988)
Q Consensus 793 ~~~l~~------------~-------s~~~y-------------------------~fdpN~~d~~G~TPLHiAA~~~G~ 828 (988)
..+... . ..... ..........|.||||.|+. .+.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~-~~~ 156 (228)
T d1k1aa_ 78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNS 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH-TTC
T ss_pred ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHH-hhh
Confidence 000000 0 00000 01123455689999999999 999
Q ss_pred HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 829 EDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 829 ~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
..+++.+++. +.+.+.+|..|.||||+|+.+|+.+++++|.+++++..
T Consensus 157 ~~~~~~~~~~------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n 204 (228)
T d1k1aa_ 157 LSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204 (228)
T ss_dssp HHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred hhhhhhhhhh------ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9999999999 89999999999999999999999999999999987643
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.60 E-value=9.1e-16 Score=155.42 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=111.7
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCcc---ccccCc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEV---SDRLGS 791 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~---~~Ga~~ 791 (988)
..+||||+|+..|+.++|+.||......-+..|.... ..+..|.||||+|++.|+.++|++||+++.+.. .+|.
T Consensus 32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~-- 108 (277)
T d2fo1e1 32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER-- 108 (277)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC--
T ss_pred CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCCeeecccccccccccccccccccccccccccccc--
Confidence 4689999999999999999998653211111121111 135569999999999999999999999843211 1111
Q ss_pred cccccccccc---------------------------------------------------------cccccCCccCCCC
Q 001971 792 ENKALVDGVH---------------------------------------------------------KGFLFRPDVIGPA 814 (988)
Q Consensus 792 ~~~~l~~~s~---------------------------------------------------------~~y~fdpN~~d~~ 814 (988)
++++.... ..+....+..+..
T Consensus 109 --t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
T d2fo1e1 109 --SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186 (277)
T ss_dssp --CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCC
T ss_pred --ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccC
Confidence 11100000 0001224567788
Q ss_pred CChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 815 G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
|.||||+|+. .++.+++++++... +.+.+.+|..|+||||+|+..|+.+++++|.+++++.
T Consensus 187 g~t~L~~~~~-~~~~~~~~~~l~~~-----~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi 247 (277)
T d2fo1e1 187 GRTALHYAAQ-VSNMPIVKYLVGEK-----GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247 (277)
T ss_dssp CCCTHHHHHS-SCCHHHHHHHHHHS-----CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCCccccccc-cccccccccccccc-----cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 9999999999 99999998755431 7889999999999999999999999999999988764
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.7e-15 Score=142.70 Aligned_cols=121 Identities=24% Similarity=0.236 Sum_probs=104.8
Q ss_pred chHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccccc
Q 001971 717 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 796 (988)
Q Consensus 717 k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l 796 (988)
...|+.|+.+|+.++|+.||+.. ..+.. ..+..|+||||+|+. |+.++|+.||+. +.
T Consensus 3 g~~L~~Aa~~g~~~~vk~lL~~~---~~~~n-----~~d~~g~t~L~~A~~-~~~~~v~~Ll~~-------~~------- 59 (156)
T d1bd8a_ 3 GDRLSGAAARGDVQEVRRLLHRE---LVHPD-----ALNRFGKTALQVMMF-GSTAIALELLKQ-------GA------- 59 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTT---CCCTT-----CCCTTSCCHHHHSCT-TCHHHHHHHHHT-------TC-------
T ss_pred cHHHHHHHHcCCHHHHHHHHHhC---CCCCC-----ccCCCCCcccccccc-cccccccccccc-------cc-------
Confidence 34699999999999999999841 11111 235568999999975 889999999998 55
Q ss_pred ccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001971 797 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 876 (988)
Q Consensus 797 ~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~ 876 (988)
++|..+..|.+|||+|+. .++.+++++++++ ++++|.+|..|.||||+|+..|+.+++++|.+
T Consensus 60 ----------~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~------~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~ 122 (156)
T d1bd8a_ 60 ----------SPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122 (156)
T ss_dssp ----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ----------cccccccccccccccccc-ccccccccccccc------ccccccccCCCCeeeccccccccccccccccc
Confidence 788889999999999999 9999999999999 99999999999999999999999999999875
Q ss_pred h
Q 001971 877 K 877 (988)
Q Consensus 877 k 877 (988)
.
T Consensus 123 ~ 123 (156)
T d1bd8a_ 123 E 123 (156)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=7.6e-15 Score=137.40 Aligned_cols=97 Identities=22% Similarity=0.112 Sum_probs=76.4
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCC
Q 001971 760 GLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDP 839 (988)
Q Consensus 760 TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p 839 (988)
||||.||+.|+.++|++||++ |+ +++ .|..|+||||+|+. .++.++++.++..+
T Consensus 4 t~L~~Aa~~g~~~~v~~LL~~-------ga-----------------~~~-~~~~g~t~L~~a~~-~~~~~~~~~~~~~~ 57 (153)
T d1awcb_ 4 KKLLEAARAGQDDEVRILMAN-------GA-----------------PFT-TDWLGTSPLHLAAQ-YGHFSTTEVLLRAG 57 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH-------TC-----------------CCC-CCTTCCCHHHHHHH-HTCHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHc-------CC-----------------Ccc-cccCCCcccccccc-cccccccccccccc
Confidence 999999999999999999999 65 334 46677777777776 66666665554432
Q ss_pred CCC---------------------------ccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 840 GMV---------------------------GIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 840 ~~v---------------------------g~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
... -.+++.+.+|.+|+||||+|+..|+.+++++|.+++++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~ 127 (153)
T d1awcb_ 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127 (153)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc
Confidence 211 1277888999999999999999999999999999987643
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4e-15 Score=139.80 Aligned_cols=121 Identities=21% Similarity=0.157 Sum_probs=108.6
Q ss_pred hHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccc
Q 001971 718 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALV 797 (988)
Q Consensus 718 ~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~ 797 (988)
.+||+|+..|+.++|+.||+..++.+ ..+..|+||||+|+ .|+.+++++||+. |+
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n---------~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-------~a-------- 57 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQNNVNVN---------AQNGFGRTALQVMK-LGNPEIARRLLLR-------GA-------- 57 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTT---------CCCTTSCCHHHHCC-SSCHHHHHHHHHT-------TC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCcC---------ccCCcccccccccc-ccccccccccccc-------cc--------
Confidence 68999999999999999999644321 13556899999886 7899999999999 77
Q ss_pred cccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001971 798 DGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877 (988)
Q Consensus 798 ~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k 877 (988)
+++..+..|.||||.|+. .+..+++..|+.+ +.+++..|..|.||+|+|+..|+.+++++|.++
T Consensus 58 ---------~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 121 (156)
T d1ihba_ 58 ---------NPDLKDRTGFAVIHDAAR-AGFLDTLQTLLEF------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121 (156)
T ss_dssp ---------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------ccccccccCccccccccc-ccccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence 789999999999999999 9999999999999 899999999999999999999999999999888
Q ss_pred hh
Q 001971 878 IN 879 (988)
Q Consensus 878 ~a 879 (988)
++
T Consensus 122 ~~ 123 (156)
T d1ihba_ 122 TA 123 (156)
T ss_dssp SC
T ss_pred cc
Confidence 65
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.3e-15 Score=149.05 Aligned_cols=135 Identities=16% Similarity=0.056 Sum_probs=110.0
Q ss_pred cccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccc
Q 001971 714 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 793 (988)
Q Consensus 714 ~R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~ 793 (988)
...+||||+|+..++.+++++|++..++.+. .+..|.||||+|+..++.++++.|+.....
T Consensus 37 ~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~---------~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~---------- 97 (221)
T d1iknd_ 37 NLQQTPLHLAVITNQPEIAEALLGAGCDPEL---------RDFRGNTPLHLACEQGCLASVGVLTQSCTT---------- 97 (221)
T ss_dssp TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC---------CCTTCCCHHHHHHHHTCHHHHHHHHHSTTT----------
T ss_pred CCCCccccccccccccccccccccccccccc---------cccccccccccccccccccccchhhhhccc----------
Confidence 3468999999999999999999986443211 345688999999999999999999987211
Q ss_pred cccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCC-CCCCCHHHHHHHcCCHHHHH
Q 001971 794 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARD-SSGSTPEDYARLRGHYSYIH 872 (988)
Q Consensus 794 ~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD-~~G~TPLh~A~~rGh~evve 872 (988)
.......+.....|.||||.|+. .|+.+++.+|+.. +++++..+ .+|.||||+|+..|+.++++
T Consensus 98 --------~~~~~~~~~~~~~~~t~l~~a~~-~~~~~~~~~l~~~------~~~~~~~~~~~G~T~L~~A~~~g~~~~v~ 162 (221)
T d1iknd_ 98 --------PHLHSILKATNYNGHTCLHLASI-HGYLGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVS 162 (221)
T ss_dssp --------TSSSCGGGCCCTTCCCHHHHHHH-TTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred --------ccccccccccccccchhhhHHhh-cCChhheeeeccc------CcccccccccCCCCccccccccccHHHHH
Confidence 01111334556679999999999 9999999999998 88888876 57999999999999999999
Q ss_pred HHHHhhhcCC
Q 001971 873 LVQKKINKRP 882 (988)
Q Consensus 873 LL~~k~ak~~ 882 (988)
+|.+++++..
T Consensus 163 ~Ll~~gad~~ 172 (221)
T d1iknd_ 163 LLLKCGADVN 172 (221)
T ss_dssp HHHTTTCCSC
T ss_pred HHHhcCCccc
Confidence 9999887643
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.56 E-value=1.2e-16 Score=172.85 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=102.1
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
..+++|++|+++|+.++++.+.. +...+.+.+. .+..|+||||+||+.|+.++|++|++. |+
T Consensus 89 ~~~t~L~~Aa~~g~~~~~~~~~~-L~~~~~~in~-----~~~~g~taL~~Aa~~G~~~~v~~Ll~~-------g~----- 150 (346)
T d2ajaa1 89 KSEVICFVAAITGCSSALDTLCL-LLTSDEIVKV-----IQAENYQAFRLAAENGHLHVLNRLCEL-------AP----- 150 (346)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC-------CHHHHHHHHHHHHTTCHHHHHHHHHS-------CT-----
T ss_pred CCCcHHHHHHHhCCHHHHHHHHH-HHhCCCcccc-----cCCCCCCHHHHHHHCCCHHHHHHHHHc-------CC-----
Confidence 35789999999999988876422 1122222221 244588999999999999999999999 66
Q ss_pred ccccccccccccCCccCC--CCCChHHHHHHhhCCCHHHHHHhhcCCCCCcccccc---ccCCCCCCCHHHHHHHcCCHH
Q 001971 795 ALVDGVHKGFLFRPDVIG--PAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWK---NARDSSGSTPEDYARLRGHYS 869 (988)
Q Consensus 795 ~l~~~s~~~y~fdpN~~d--~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdv---narD~~G~TPLh~A~~rGh~e 869 (988)
+++..+ .+|.||||+||. .|+.+||++|++. +++. +..+.+|.||+++|+.+||.+
T Consensus 151 ------------~~~~~~~~~~g~t~L~~Aa~-~g~~~iv~~Ll~~------~~~~~~~~~~~~~~~t~l~~A~~~g~~~ 211 (346)
T d2ajaa1 151 ------------TEIMAMIQAENYHAFRLAAE-NGHLHVLNRLCEL------APTEATAMIQAENYYAFRWAAVGRGHHN 211 (346)
T ss_dssp ------------TTHHHHHSHHHHHHHHHHHH-TTCHHHHHHHHHS------CGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred ------------CccccccccCCCChhHHHHH-HhhHHHHHHHHHc------CCcccccccccCCCcchhhHHhhcCHHH
Confidence 666655 469999999999 9999999999998 7654 445677889999999999999
Q ss_pred HHHHHHHhhhc
Q 001971 870 YIHLVQKKINK 880 (988)
Q Consensus 870 vveLL~~k~ak 880 (988)
++++|.+++++
T Consensus 212 iv~~Ll~~ga~ 222 (346)
T d2ajaa1 212 VINFLLDCPVM 222 (346)
T ss_dssp HHHHHTTSHHH
T ss_pred HHHHHHhCCCC
Confidence 99999988764
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1e-14 Score=153.69 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=105.5
Q ss_pred hhcCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHHHHHcCch---HHHHHHhhhhcccccc
Q 001971 670 ERFGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWC---AVVKKLLHILLDGTVS 745 (988)
Q Consensus 670 ~~~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~Ave~g~~---aVVk~LL~~l~dg~vd 745 (988)
++.|.+++|.+| .+.+..+..|++++......+ ...++|||+|+..++. ..+..|++.+.+. +
T Consensus 104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d-----------~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~-~- 170 (301)
T d1sw6a_ 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-----------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-L- 170 (301)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-----------TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-G-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCC-----------cccccHHHHhhhcccchhhhhHHHHHHHHhhh-h-
Confidence 467889999988 688888888888875333322 2357899999987753 2333444433221 1
Q ss_pred CCCCCchhhccCCCcHHHHHHHcCCH------------HHHHHHhccCCCccccccCcccccc-------ccc--ccc--
Q 001971 746 LGEHPSLDLALTELGLLHRAVRKNSR------------PLVDLLLRFVPLEVSDRLGSENKAL-------VDG--VHK-- 802 (988)
Q Consensus 746 ~g~~~~l~~~l~G~TpLH~AVr~g~~------------eiVelLL~~~p~~~~~Ga~~~~~~l-------~~~--s~~-- 802 (988)
...+..|.||||.|+..+.. .++.+|++.. ........ ... ...
T Consensus 171 ------~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (301)
T d1sw6a_ 171 ------ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ-------NRPIQSGTNEKESKPNDKNGERKDS 237 (301)
T ss_dssp ------GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG-------GCCEEEC----------------CH
T ss_pred ------hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcC-------CcchhcccccccchhHHHHhcchHH
Confidence 11244578999988875542 2344454441 11100000 000 000
Q ss_pred ---------ccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHH
Q 001971 803 ---------GFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYAR 863 (988)
Q Consensus 803 ---------~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~ 863 (988)
.+.-.+|.+|..|+||||+||. .|+.+||++|+++ ||+++.+|..|+||||||+
T Consensus 238 ~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~-~g~~~iv~~Ll~~------GAd~~~~n~~G~Tpl~~A~ 300 (301)
T d1sw6a_ 238 ILENLDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDY------GADPFIANKSGLRPVDFGA 300 (301)
T ss_dssp HHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH-HCCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred HHHHHhhHHHHhcCccCCCCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHcC
Confidence 0011279999999999999999 9999999999999 9999999999999999985
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.1e-14 Score=135.26 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=84.2
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 759 LGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 759 ~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
.++||+|+++|+.++|++||++ |+ +||.++..|.||||+| . .|+.++|++|+++
T Consensus 4 ~~~L~~Aa~~G~~~~v~~Ll~~-------ga-----------------d~n~~~~~g~t~l~~a-~-~g~~~~v~~Ll~~ 57 (125)
T d1bi7b_ 4 ADWLATAAARGRVEEVRALLEA-------GA-----------------NPNAPNSYGRRPIQVM-M-MGSARVAELLLLH 57 (125)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTT-------TC-----------------CTTCCCSSSCCTTTSS-C-TTCHHHHHHHHTT
T ss_pred hhHHHHHHHCCCHHHHHHHHHc-------CC-----------------cccccccccccccccc-c-ccccccccccccc
Confidence 4899999999999999999999 87 8999999999999966 4 6999999999999
Q ss_pred CCCCccccccccCCCCCC-CHHHHHHHcCCHHHHHHHHHhhhcC
Q 001971 839 PGMVGIEAWKNARDSSGS-TPEDYARLRGHYSYIHLVQKKINKR 881 (988)
Q Consensus 839 p~~vg~gAdvnarD~~G~-TPLh~A~~rGh~evveLL~~k~ak~ 881 (988)
|++++.+|..|. ||||+|+.+|+.+++++|.+++++.
T Consensus 58 ------ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~ 95 (125)
T d1bi7b_ 58 ------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 95 (125)
T ss_dssp ------TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred ------cccccccccccccccccccccccccccccccccccccc
Confidence 999999998876 6999999999999999999998764
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=5e-14 Score=148.30 Aligned_cols=132 Identities=17% Similarity=0.046 Sum_probs=93.5
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCH-------HHHHHHhccCCCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSR-------PLVDLLLRFVPLEVSD 787 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~-------eiVelLL~~~p~~~~~ 787 (988)
..++|||+|+..|+.++|++||+..++.+ ..+..|+||||+||..++. +++++|..
T Consensus 106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~---------~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-------- 168 (301)
T d1sw6a_ 106 HGNTPLHWLTSIANLELVKHLVKHGSNRL---------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-------- 168 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------cCCcccccHHHHhhhcccchhhhhHHHHHHHHhh--------
Confidence 46799999999999999999999654322 1345689999999987642 34444432
Q ss_pred ccCccccccccccccccccCCccCCCCCChHHHHHHhhC---CCHH--------HHHHhhcCCCCC--------------
Q 001971 788 RLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKD---GSED--------VLDALTDDPGMV-------------- 842 (988)
Q Consensus 788 Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~---G~~e--------VV~lLL~~p~~v-------------- 842 (988)
..+..|..|+||||.|+... +... ++..|+......
T Consensus 169 -------------------~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 229 (301)
T d1sw6a_ 169 -------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229 (301)
T ss_dssp -------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred -------------------hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHH
Confidence 34567788999999888622 2222 233333321100
Q ss_pred -----------------ccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcCC
Q 001971 843 -----------------GIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRP 882 (988)
Q Consensus 843 -----------------g~gAdvnarD~~G~TPLh~A~~rGh~evveLL~~k~ak~~ 882 (988)
.++..+|++|..|+||||+|++.||.+++++|.+++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~ 286 (301)
T d1sw6a_ 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286 (301)
T ss_dssp ------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred HHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 0112278999999999999999999999999999998754
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.47 E-value=2.2e-13 Score=132.89 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred ccchHHHHHHHcCchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCcccc
Q 001971 715 RFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENK 794 (988)
Q Consensus 715 R~k~lL~~Ave~g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~ 794 (988)
.+.+|||+||..|+.++++.||+..++.+. .+..+.+++|.++..++.......+................
T Consensus 22 ~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (209)
T d1ot8a_ 22 TGETSLHLAARFARADAAKRLLDAGADANS---------QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 92 (209)
T ss_dssp HCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhhcccccc---------ccccccccccccccccccccccccccccccccccccccccc
Confidence 357899999999999999999996543221 23346688999999888887766655422110000000000
Q ss_pred ccccccc----------cccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH
Q 001971 795 ALVDGVH----------KGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARL 864 (988)
Q Consensus 795 ~l~~~s~----------~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~p~~vg~gAdvnarD~~G~TPLh~A~~ 864 (988)
....... ..+..+++..+..|.||||.|+. .|..++++.|++. +++++.+|..|.||||+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~-~~~~~~~~~l~~~------~~~~~~~d~~g~TpL~~A~~ 165 (209)
T d1ot8a_ 93 PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA-VNNTEAVNILLMH------HANRDAQDDKDETPLFLAAR 165 (209)
T ss_dssp HHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHH
T ss_pred cccccccccchhhhhhhhhhcccccccCCCCCCcchhhcc-cCcceeeeeeccc------cccccccccccccccchhcc
Confidence 0000000 00123578899999999999999 9999999999999 89999999999999999999
Q ss_pred cCCHHHHHHHHHhhhcC
Q 001971 865 RGHYSYIHLVQKKINKR 881 (988)
Q Consensus 865 rGh~evveLL~~k~ak~ 881 (988)
.||.+++++|++++++.
T Consensus 166 ~g~~~~v~~Ll~~gad~ 182 (209)
T d1ot8a_ 166 EGSYEASKALLDNFANR 182 (209)
T ss_dssp TTCHHHHHHHHHTTCCT
T ss_pred ccHHHHHHHHHHCCCCC
Confidence 99999999999988764
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.40 E-value=2.1e-14 Score=155.08 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=81.6
Q ss_pred ccCCCcHHHHHHHcCCHHHHHH---HhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhCCCHHH
Q 001971 755 ALTELGLLHRAVRKNSRPLVDL---LLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDV 831 (988)
Q Consensus 755 ~l~G~TpLH~AVr~g~~eiVel---LL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eV 831 (988)
+..|.||||+|+++|+.++|++ |+++ |+ ++|.+|..|.||||+||. .|+.+|
T Consensus 87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-------~~-----------------~in~~~~~g~taL~~Aa~-~G~~~~ 141 (346)
T d2ajaa1 87 GIKSEVICFVAAITGCSSALDTLCLLLTS-------DE-----------------IVKVIQAENYQAFRLAAE-NGHLHV 141 (346)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--C-------CS-----------------SCC--CHHHHHHHHHHHH-TTCHHH
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHhC-------CC-----------------cccccCCCCCCHHHHHHH-CCCHHH
Confidence 4457899999999999988775 6677 77 899999999999999999 999999
Q ss_pred HHHhhcCCCCCccccccccCC--CCCCCHHHHHHHcCCHHHHHHHHHhhhc
Q 001971 832 LDALTDDPGMVGIEAWKNARD--SSGSTPEDYARLRGHYSYIHLVQKKINK 880 (988)
Q Consensus 832 V~lLL~~p~~vg~gAdvnarD--~~G~TPLh~A~~rGh~evveLL~~k~ak 880 (988)
|++|+++ |++++..| .+|.||||+|+..||.+++++|.+++++
T Consensus 142 v~~Ll~~------g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~ 186 (346)
T d2ajaa1 142 LNRLCEL------APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186 (346)
T ss_dssp HHHHHHS------CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred HHHHHHc------CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc
Confidence 9999999 99999876 4699999999999999999999987643
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=4.3e-13 Score=130.12 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=78.3
Q ss_pred ccchHHHHHHHc---CchHHHHHHhhhhccccccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCc
Q 001971 715 RFKWLIEFSMDH---EWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGS 791 (988)
Q Consensus 715 R~k~lL~~Ave~---g~~aVVk~LL~~l~dg~vd~g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~ 791 (988)
..+++||+|+.. ++.++|++||+..++.+ ..+..|+||||+||+.|+.++|++||++ |+
T Consensus 44 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin---------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-------ga-- 105 (154)
T d1dcqa1 44 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---------KQTGKGSTALHYCCLTDNAECLKLLLRG-------KA-- 105 (154)
T ss_dssp TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT---------CCCTTCCCHHHHHHHTTCHHHHHHHHHT-------TC--
T ss_pred CCCchHHHHHHhcCCCCHHHHHHHHHcCCChh---------hhhhhhcccccccccccccccccccccc-------Cc--
Confidence 357899999964 68899999999654321 1355689999999999999999999999 88
Q ss_pred cccccccccccccccCCccCCCCCChHHHHHHhhCCCHHHHHHhhcC
Q 001971 792 ENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDD 838 (988)
Q Consensus 792 ~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~G~~eVV~lLL~~ 838 (988)
++|.+|..|+||||+|+. .|+.+|+++|++.
T Consensus 106 ---------------d~~~~d~~g~tpL~~A~~-~~~~~i~~~L~~~ 136 (154)
T d1dcqa1 106 ---------------SIEIANESGETPLDIAKR-LKHEHCEELLTQA 136 (154)
T ss_dssp ---------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHH
T ss_pred ---------------cccccCCCCCCHHHHHHH-cCCHHHHHHHHHh
Confidence 899999999999999999 9999999999986
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=9.6e-13 Score=133.39 Aligned_cols=133 Identities=18% Similarity=0.076 Sum_probs=97.3
Q ss_pred cCCcccHHHH-HHHHHHHhHhhcccccccccCCCCCCCCCccccccchHHHH----HHHcCchHHHHHHhhhhccccccC
Q 001971 672 FGKIDTKNQA-MDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEF----SMDHEWCAVVKKLLHILLDGTVSL 746 (988)
Q Consensus 672 ~g~~~lh~~a-m~fL~EIGWLLqr~~~~~~~~~~d~~~~l~qi~R~k~lL~~----Ave~g~~aVVk~LL~~l~dg~vd~ 746 (988)
.|.+++|.++ .+.+.-+.+|+.+... .....+ ...++++.. +...+...+++.|++..++.+
T Consensus 147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~i~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n--- 213 (285)
T d1wdya_ 147 GGATALMDAAEKGHVEVLKILLDEMGA--DVNACD--------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--- 213 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHTSCC--CTTCCC--------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS---
T ss_pred cCchHHHHHHHcCCHHHHHHHHhccCC--Cccccc--------CCCCcccccccccccchHHHHHHHHHHHCCCCCC---
Confidence 4678888888 5777788888865321 001000 011223332 334445678888888544321
Q ss_pred CCCCchhhccCCCcHHHHHHHcCCHHHHHHHhccCCCccccccCccccccccccccccccCCccCCCCCChHHHHHHhhC
Q 001971 747 GEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKD 826 (988)
Q Consensus 747 g~~~~l~~~l~G~TpLH~AVr~g~~eiVelLL~~~p~~~~~Ga~~~~~~l~~~s~~~y~fdpN~~d~~G~TPLHiAA~~~ 826 (988)
..+..|.||||+|++.|+.++|++||+.. |+ ++|.+|.+|+||||+|+. .
T Consensus 214 ------~~~~~g~t~L~~a~~~~~~~~v~~lL~~~------g~-----------------din~~d~~G~TpL~~A~~-~ 263 (285)
T d1wdya_ 214 ------VRGERGKTPLILAVEKKHLGLVQRLLEQE------HI-----------------EINDTDSDGKTALLLAVE-L 263 (285)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHSS------SC-----------------CTTCCCTTSCCHHHHHHH-T
T ss_pred ------ccCCCCCCccchhhhcCcHHHHHHHHHcC------CC-----------------CCcCCCCCCCCHHHHHHH-c
Confidence 12455889999999999999999999852 55 899999999999999999 9
Q ss_pred CCHHHHHHhhcCCCCCccccccccCCC
Q 001971 827 GSEDVLDALTDDPGMVGIEAWKNARDS 853 (988)
Q Consensus 827 G~~eVV~lLL~~p~~vg~gAdvnarD~ 853 (988)
|+.++|++|+++ ||++|++|.
T Consensus 264 ~~~eiv~~Ll~~------GAd~n~~d~ 284 (285)
T d1wdya_ 264 KLKKIAELLCKR------GASTDCGDL 284 (285)
T ss_dssp TCHHHHHHHHHH------SSCSCCSSC
T ss_pred CCHHHHHHHHHC------CCCCCcccC
Confidence 999999999999 999999984
|